https://launchpad.net/ubuntu/+source/ball/1.5.0+git20180813.37fc53c-11/+build/25415993 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-042 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_225~602~ubuntu20.04.1 python3-lpbuildd_225~602~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 21 Dec 23:20:39 ntpdate[1838]: adjust time server 10.211.37.1 offset 0.021669 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-25415993 --image-type chroot /home/buildd/filecache-default/33b5cc1d95848e4895e3aa3c2962c834df4e2086 Creating target for build PACKAGEBUILD-25415993 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-25415993 Starting target for build PACKAGEBUILD-25415993 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-25415993 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-25415993 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-25415993 Updating target for build PACKAGEBUILD-25415993 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main armhf Packages [1326 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe armhf Packages [13.7 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5866 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf Packages [197 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [91.0 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf Packages [1800 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [643 kB] Fetched 24.7 MB in 9s (2618 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: lsb-base* The following NEW packages will be installed: libjansson4 libperl5.36 perl-modules-5.36 The following packages will be upgraded: adduser binutils binutils-arm-linux-gnueabihf binutils-common ca-certificates coreutils cpp-12 dash debconf diffutils dpkg dpkg-dev g++-12 gcc-12 gcc-12-base gpg gpg-agent gpgconf gpgv libapparmor1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libcap2 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libsqlite3-0 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libubsan1 libudev1 linux-libc-dev openssl perl perl-base systemd systemd-sysv sysvinit-utils xz-utils zlib1g 58 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 69.7 MB of archives. After this operation, 46.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf coreutils armhf 9.1-1ubuntu1 [1290 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf dpkg armhf 1.21.12ubuntu2 [1302 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main armhf dash armhf 0.5.11+git20210903+057cd650a4ed-9ubuntu1 [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf diffutils armhf 1:3.8-3 [167 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl-modules-5.36 all 5.36.0-6 [2985 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libperl5.36 armhf 5.36.0-6 [4043 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl armhf 5.36.0-6 [235 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf perl-base armhf 5.36.0-6 [1621 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf zlib1g armhf 1:1.2.13.dfsg-1ubuntu3 [48.9 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf sysvinit-utils armhf 3.05-7ubuntu1 [25.9 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf systemd-sysv armhf 252.1-1ubuntu1 [11.4 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libaudit-common all 1:3.0.7-1ubuntu3 [4864 B] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libaudit1 armhf 1:3.0.7-1ubuntu3 [42.6 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf liblzma5 armhf 5.4.0-0.1 [108 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf debconf all 1.5.80 [125 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main armhf libssl3 armhf 3.0.5-2ubuntu2 [1560 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libkmod2 armhf 30+20220905-1ubuntu1 [41.9 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libapparmor1 armhf 3.0.8-1ubuntu1 [32.4 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcap2 armhf 1:2.66-2 [23.6 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main armhf liblz4-1 armhf 1.9.4-1 [57.6 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf systemd armhf 252.1-1ubuntu1 [2983 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsystemd-shared armhf 252.1-1ubuntu1 [1668 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsystemd0 armhf 252.1-1ubuntu1 [308 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcc1-0 armhf 12.2.0-10ubuntu1 [38.9 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libctf-nobfd0 armhf 2.39.50.20221211-0ubuntu1 [85.1 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libctf0 armhf 2.39.50.20221211-0ubuntu1 [86.0 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main armhf libjansson4 armhf 2.14-2 [28.9 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.39.50.20221211-0ubuntu1 [2778 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libbinutils armhf 2.39.50.20221211-0ubuntu1 [482 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils-common armhf 2.39.50.20221211-0ubuntu1 [225 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf binutils armhf 2.39.50.20221211-0ubuntu1 [3114 B] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgomp1 armhf 12.2.0-10ubuntu1 [109 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libatomic1 armhf 12.2.0-10ubuntu1 [7660 B] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libasan8 armhf 12.2.0-10ubuntu1 [2382 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libubsan1 armhf 12.2.0-10ubuntu1 [950 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gcc-12-base armhf 12.2.0-10ubuntu1 [19.6 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libstdc++6 armhf 12.2.0-10ubuntu1 [603 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf g++-12 armhf 12.2.0-10ubuntu1 [9309 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libstdc++-12-dev armhf 12.2.0-10ubuntu1 [2238 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgcc-12-dev armhf 12.2.0-10ubuntu1 [857 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gcc-12 armhf 12.2.0-10ubuntu1 [16.2 MB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf cpp-12 armhf 12.2.0-10ubuntu1 [8151 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgcc-s1 armhf 12.2.0-10ubuntu1 [41.4 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libudev1 armhf 252.1-1ubuntu1 [81.1 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf adduser all 3.129ubuntu1 [59.0 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gpgv armhf 2.2.40-1ubuntu2 [193 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main armhf openssl armhf 3.0.5-2ubuntu2 [1148 kB] Get:48 http://ftpmaster.internal/ubuntu lunar/main armhf ca-certificates all 20211016ubuntu1 [141 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libkeyutils1 armhf 1.6.3-2 [8062 B] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libkrb5support0 armhf 1.20.1-1build1 [29.7 kB] Get:51 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libk5crypto3 armhf 1.20.1-1build1 [78.4 kB] Get:52 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libgssapi-krb5-2 armhf 1.20.1-1build1 [118 kB] Get:53 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libkrb5-3 armhf 1.20.1-1build1 [321 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsqlite3-0 armhf 3.40.0-2 [554 kB] Get:55 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf xz-utils armhf 5.4.0-0.1 [175 kB] Get:56 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf dpkg-dev all 1.21.12ubuntu2 [1071 kB] Get:57 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libdpkg-perl all 1.21.12ubuntu2 [242 kB] Get:58 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gpg armhf 2.2.40-1ubuntu2 [482 kB] Get:59 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gpgconf armhf 2.2.40-1ubuntu2 [117 kB] Get:60 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf gpg-agent armhf 2.2.40-1ubuntu2 [236 kB] Get:61 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf linux-libc-dev armhf 5.19.0-23.24 [1306 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 69.7 MB in 4s (18.6 MB/s) (Reading database ... 13371 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu1_armhf.deb ... Unpacking coreutils (9.1-1ubuntu1) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu1) ... (Reading database ... 13371 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.12ubuntu2_armhf.deb ... Unpacking dpkg (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.12ubuntu2) ... (Reading database ... 13371 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1_armhf.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) over (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... (Reading database ... 13371 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.8-3_armhf.deb ... Unpacking diffutils (1:3.8-3) over (1:3.8-1) ... Setting up diffutils (1:3.8-3) ... 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Setting up zlib1g:armhf (1:1.2.13.dfsg-1ubuntu3) ... dpkg: lsb-base: dependency problems, but removing anyway as you requested: sysvinit-utils depends on lsb-base (>= 11.0.0~). procps depends on lsb-base (>= 3.0-10). (Reading database ... 15293 files and directories currently installed.) Removing lsb-base (11.2ubuntu1) ... (Reading database ... 15285 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.05-7ubuntu1_armhf.deb ... Unpacking sysvinit-utils (3.05-7ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.05-7ubuntu1) ... (Reading database ... 15288 files and directories currently installed.) Preparing to unpack .../systemd-sysv_252.1-1ubuntu1_armhf.deb ... Unpacking systemd-sysv (252.1-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libaudit-common_1%3a3.0.7-1ubuntu3_all.deb ... Unpacking libaudit-common (1:3.0.7-1ubuntu3) over (1:3.0.7-1ubuntu2) ... Setting up libaudit-common (1:3.0.7-1ubuntu3) ... 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Preparing to unpack .../adduser_3.129ubuntu1_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.129ubuntu1) over (3.121ubuntu1) ... Setting up adduser (3.129ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 15295 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-1ubuntu2_armhf.deb ... Unpacking gpgv (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Setting up gpgv (2.2.40-1ubuntu2) ... (Reading database ... 15295 files and directories currently installed.) Preparing to unpack .../00-openssl_3.0.5-2ubuntu2_armhf.deb ... Unpacking openssl (3.0.5-2ubuntu2) over (3.0.5-2ubuntu1) ... Preparing to unpack .../01-ca-certificates_20211016ubuntu1_all.deb ... Unpacking ca-certificates (20211016ubuntu1) over (20211016) ... Preparing to unpack .../02-libkeyutils1_1.6.3-2_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-2) over (1.6.3-1) ... 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Unpacking libdpkg-perl (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Preparing to unpack .../11-gpg_2.2.40-1ubuntu2_armhf.deb ... Unpacking gpg (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../12-gpgconf_2.2.40-1ubuntu2_armhf.deb ... Unpacking gpgconf (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../13-gpg-agent_2.2.40-1ubuntu2_armhf.deb ... Unpacking gpg-agent (2.2.40-1ubuntu2) over (2.2.40-1ubuntu1) ... Preparing to unpack .../14-linux-libc-dev_5.19.0-23.24_armhf.deb ... Unpacking linux-libc-dev:armhf (5.19.0-23.24) over (5.19.0-21.21) ... Setting up libkeyutils1:armhf (1.6.3-2) ... Setting up libapparmor1:armhf (3.0.8-1ubuntu1) ... Setting up cpp-12 (12.2.0-10ubuntu1) ... Setting up libsqlite3-0:armhf (3.40.0-2) ... Setting up binutils-common:armhf (2.39.50.20221211-0ubuntu1) ... Setting up linux-libc-dev:armhf (5.19.0-23.24) ... Setting up libctf-nobfd0:armhf (2.39.50.20221211-0ubuntu1) ... Setting up libgomp1:armhf (12.2.0-10ubuntu1) ... Setting up libjansson4:armhf (2.14-2) ... Setting up libkrb5support0:armhf (1.20.1-1build1) ... Setting up perl-modules-5.36 (5.36.0-6) ... Setting up xz-utils (5.4.0-0.1) ... Setting up libatomic1:armhf (12.2.0-10ubuntu1) ... Setting up libk5crypto3:armhf (1.20.1-1build1) ... Setting up libubsan1:armhf (12.2.0-10ubuntu1) ... Setting up libasan8:armhf (12.2.0-10ubuntu1) ... Setting up gpgconf (2.2.40-1ubuntu2) ... Setting up libkrb5-3:armhf (1.20.1-1build1) ... Setting up libbinutils:armhf (2.39.50.20221211-0ubuntu1) ... Setting up openssl (3.0.5-2ubuntu2) ... Setting up libcc1-0:armhf (12.2.0-10ubuntu1) ... Setting up libperl5.36:armhf (5.36.0-6) ... Setting up gpg (2.2.40-1ubuntu2) ... Setting up libkmod2:armhf (30+20220905-1ubuntu1) ... Setting up libctf0:armhf (2.39.50.20221211-0ubuntu1) ... Setting up gpg-agent (2.2.40-1ubuntu2) ... Setting up ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 0 added, 3 removed; done. Setting up perl (5.36.0-6) ... Setting up libgcc-12-dev:armhf (12.2.0-10ubuntu1) ... Setting up libgssapi-krb5-2:armhf (1.20.1-1build1) ... Setting up libsystemd-shared:armhf (252.1-1ubuntu1) ... Setting up libdpkg-perl (1.21.12ubuntu2) ... Setting up binutils-arm-linux-gnueabihf (2.39.50.20221211-0ubuntu1) ... Setting up libstdc++-12-dev:armhf (12.2.0-10ubuntu1) ... Setting up systemd (252.1-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up binutils (2.39.50.20221211-0ubuntu1) ... Setting up dpkg-dev (1.21.12ubuntu2) ... Setting up gcc-12 (12.2.0-10ubuntu1) ... Setting up g++-12 (12.2.0-10ubuntu1) ... Setting up systemd-sysv (252.1-1ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... (Reading database ... 15315 files and directories currently installed.) Purging configuration files for lsb-base (11.2ubuntu1) ... Processing triggers for ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-25415993 armhf lunar-proposed -c chroot:build-PACKAGEBUILD-25415993 --arch=armhf --dist=lunar-proposed --nolog ball_1.5.0+git20180813.37fc53c-11.dsc Initiating build PACKAGEBUILD-25415993 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 armv7l sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-arm64-042.buildd +==============================================================================+ | ball 1.5.0+git20180813.37fc53c-11 (armhf) Wed, 21 Dec 2022 23:21:38 +0000 | +==============================================================================+ Package: ball Version: 1.5.0+git20180813.37fc53c-11 Source Version: 1.5.0+git20180813.37fc53c-11 Distribution: lunar-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-25415993/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/ball-67KEHm/resolver-FRZqnL' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ball_1.5.0+git20180813.37fc53c-11.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/ball-67KEHm/ball-1.5.0+git20180813.37fc53c' with '<>' I: NOTICE: Log filtering will replace 'build/ball-67KEHm' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, qtbase5-dev, libqt5opengl5-dev, python3-sip-dev, flex, bison, cmake, qtwebengine5-dev, qttools5-dev, libeigen3-dev, python3-dev, libboost-dev, libboost-iostreams-dev, libboost-thread-dev, libglew-dev, libx11-dev, tidy, chrpath, libtirpc-dev, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-python, qtbase5-dev, libqt5opengl5-dev, python3-sip-dev, flex, bison, cmake, qtwebengine5-dev, qttools5-dev, libeigen3-dev, python3-dev, libboost-dev, libboost-iostreams-dev, libboost-thread-dev, libglew-dev, libx11-dev, tidy, chrpath, libtirpc-dev, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [510 B] Get:5 copy:/<>/apt_archive ./ Packages [566 B] Fetched 2033 B in 0s (56.9 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bison bsdextrautils chrpath cmake cmake-data debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian iso-codes libarchive-zip-perl libarchive13 libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system1.74-dev libboost-system1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libcap2-bin libclang1-15 libcups2 libcurl4 libdbus-1-3 libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libevent-2.1-7a libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglew-dev libglew2.2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhyphen0 libice6 libicu-dev libicu71 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp25 liblcms2-2 libldap2 libllvm15 libmagic-mgc libmagic1 libmd4c0 libminizip1 libmpdec3 libmtdev1 libnghttp2-14 libnspr4 libnss3 libopengl-dev libopengl0 libopus0 liborc-0.4-0 libpcre2-16-0 libpipeline1 libpkgconf3 libpsl5 libpthread-stubs0-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5positioning5 libqt5positioning5-plugins libqt5positioningquick5 libqt5printsupport5 libqt5qml5 libqt5qmlmodels5 libqt5qmlworkerscript5 libqt5quick5 libqt5quickparticles5 libqt5quickshapes5 libqt5quicktest5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5-sqlite libqt5test5 libqt5webchannel5 libqt5webchannel5-dev libqt5webengine-data libqt5webengine5 libqt5webenginecore5 libqt5webenginewidgets5 libqt5webkit5 libqt5widgets5 libqt5xml5 libre2-9 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsm6 libsnappy1v5 libssh-4 libsub-override-perl libtidy5deb1 libtool libuchardet0 libunwind8 libuv1 libvpx7 libvulkan-dev libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxtst6 libxxf86vm1 m4 man-db media-types pkg-config pkgconf pkgconf-bin po-debconf python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-sip python3-sip-dev python3.10 python3.10-dev python3.10-minimal qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake qt5-qmake-bin qt5-qmltooling-plugins qtattributionsscanner-qt5 qtbase5-dev qtbase5-dev-tools qtchooser qtdeclarative5-dev qtdeclarative5-dev-tools qtpositioning5-dev qttools5-dev qttools5-dev-tools qtwebengine5-dev shared-mime-info sip-dev tidy ucf x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc bison-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make flit python3-build python3-tomli python3-installer flex-doc gettext-doc libasprintf-dev libgettextpo-dev groff isoquery lrzip libasound2-plugins alsa-utils libboost-doc libboost1.74-doc libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev cups-common libeigen3-doc glew-utils low-memory-monitor libvisual-0.4-plugins gstreamer1.0-tools icu-doc liblcms2-utils opus-tools libthai0 qgnomeplatform-qt5 qt5-image-formats-plugins lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk libwacom-bin libx11-doc libxcb-doc libxext-doc m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-sip-doc python3.10-venv python3.10-doc binfmt-support qt5-doc default-libmysqlclient-dev firebird-dev libpq-dev libsqlite3-dev unixodbc-dev Recommended packages: libfl-dev curl | wget | lynx alsa-ucm-conf alsa-topology-conf libpam-cap dbus libarchive-cpio-perl libgl1-amber-dri libglib2.0-data xdg-user-dirs gstreamer1.0-plugins-base javascript-common libldap-common publicsuffix qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme qtwayland5 geoclue-2.0 libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl qtwebengine5-doc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bison bsdextrautils chrpath cmake cmake-data debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file flex fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base icu-devtools intltool-debian iso-codes libarchive-zip-perl libarchive13 libasound2 libasound2-data libavahi-client3 libavahi-common-data libavahi-common3 libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-iostreams-dev libboost-iostreams1.74-dev libboost-iostreams1.74.0 libboost-regex1.74-dev libboost-regex1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system1.74-dev libboost-system1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libcap2-bin libclang1-15 libcups2 libcurl4 libdbus-1-3 libdebhelper-perl libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-nouveau2 libdrm-radeon1 libdrm2 libdw1 libedit2 libegl-dev libegl-mesa0 libegl1 libeigen3-dev libelf1 libevdev2 libevent-2.1-7a libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgl-dev libgl1 libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglew-dev libglew2.2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd0 libglx-dev libglx-mesa0 libglx0 libgraphite2-3 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhyphen0 libice6 libicu-dev libicu71 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp25 liblcms2-2 libldap2 libllvm15 libmagic-mgc libmagic1 libmd4c0 libminizip1 libmpdec3 libmtdev1 libnghttp2-14 libnspr4 libnss3 libopengl-dev libopengl0 libopus0 liborc-0.4-0 libpcre2-16-0 libpipeline1 libpkgconf3 libpsl5 libpthread-stubs0-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5help5 libqt5network5 libqt5opengl5 libqt5opengl5-dev libqt5positioning5 libqt5positioning5-plugins libqt5positioningquick5 libqt5printsupport5 libqt5qml5 libqt5qmlmodels5 libqt5qmlworkerscript5 libqt5quick5 libqt5quickparticles5 libqt5quickshapes5 libqt5quicktest5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5-sqlite libqt5test5 libqt5webchannel5 libqt5webchannel5-dev libqt5webengine-data libqt5webengine5 libqt5webenginecore5 libqt5webenginewidgets5 libqt5webkit5 libqt5widgets5 libqt5xml5 libre2-9 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libsm6 libsnappy1v5 libssh-4 libsub-override-perl libtidy5deb1 libtool libuchardet0 libunwind8 libuv1 libvpx7 libvulkan-dev libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxcomposite1 libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrandr2 libxrender1 libxshmfence1 libxslt1.1 libxtst6 libxxf86vm1 m4 man-db media-types pkg-config pkgconf pkgconf-bin po-debconf python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3-sip python3-sip-dev python3.10 python3.10-dev python3.10-minimal qdoc-qt5 qhelpgenerator-qt5 qt5-assistant qt5-qmake qt5-qmake-bin qt5-qmltooling-plugins qtattributionsscanner-qt5 qtbase5-dev qtbase5-dev-tools qtchooser qtdeclarative5-dev qtdeclarative5-dev-tools qtpositioning5-dev qttools5-dev qttools5-dev-tools qtwebengine5-dev sbuild-build-depends-main-dummy shared-mime-info sip-dev tidy ucf x11-common x11proto-dev xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 290 newly installed, 0 to remove and 0 not upgraded. Need to get 207 MB of archives. After this operation, 877 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [786 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main armhf libpython3.10-minimal armhf 3.10.9-1 [788 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main armhf libexpat1 armhf 2.5.0-1 [63.4 kB] Get:4 http://ftpmaster.internal/ubuntu lunar/main armhf python3.10-minimal armhf 3.10.9-1 [1817 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main armhf python3-minimal armhf 3.10.6-1ubuntu1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main armhf media-types all 8.0.0 [24.9 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main armhf libmpdec3 armhf 2.5.1-2build2 [76.5 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main armhf libpython3.10-stdlib armhf 3.10.9-1 [1708 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main armhf python3.10 armhf 3.10.9-1 [503 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main armhf libpython3-stdlib armhf 3.10.6-1ubuntu1 [6880 B] Get:11 http://ftpmaster.internal/ubuntu lunar/main armhf python3 armhf 3.10.6-1ubuntu1 [22.3 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main armhf m4 armhf 1.4.19-1 [236 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main armhf flex armhf 2.6.4-8.1 [291 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main armhf libglvnd0 armhf 1.5.0-1 [82.3 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm-common all 2.4.114-1 [5940 B] Get:16 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm2 armhf 2.4.114-1 [34.3 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main armhf libwayland-server0 armhf 1.21.0-1 [28.1 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main armhf libgbm1 armhf 22.2.5-0ubuntu1 [28.3 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main armhf libglapi-mesa armhf 22.2.5-0ubuntu1 [42.7 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main armhf libwayland-client0 armhf 1.21.0-1 [21.8 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main armhf libxau6 armhf 1:1.0.9-1build5 [6622 B] Get:22 http://ftpmaster.internal/ubuntu lunar/main armhf libbsd0 armhf 0.11.7-1 [39.1 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main armhf libxdmcp6 armhf 1:1.1.3-0ubuntu5 [9452 B] Get:24 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb1 armhf 1.15-1 [45.4 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libx11-data all 2:1.8.3-2 [118 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libx11-6 armhf 2:1.8.3-2 [582 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libx11-xcb1 armhf 2:1.8.3-2 [7712 B] Get:28 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-dri2-0 armhf 1.15-1 [6872 B] Get:29 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-dri3-0 armhf 1.15-1 [6778 B] Get:30 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-present0 armhf 1.15-1 [5526 B] Get:31 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-sync1 armhf 1.15-1 [8794 B] Get:32 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-xfixes0 armhf 1.15-1 [10.0 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main armhf libxshmfence1 armhf 1.3-1build4 [5080 B] Get:34 http://ftpmaster.internal/ubuntu lunar/main armhf libegl-mesa0 armhf 22.2.5-0ubuntu1 [88.0 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/main armhf libegl1 armhf 1.5.0-1 [29.6 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/main armhf libgles2 armhf 1.5.0-1 [18.1 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libglib2.0-0 armhf 2.74.3-1 [1325 kB] Get:38 http://ftpmaster.internal/ubuntu lunar/main armhf libelf1 armhf 0.188-1 [43.9 kB] Get:39 http://ftpmaster.internal/ubuntu lunar/main armhf libdw1 armhf 0.188-1 [224 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libunwind8 armhf 1.6.2-3 [49.2 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcap2-bin armhf 1:2.66-2 [32.2 kB] Get:42 http://ftpmaster.internal/ubuntu lunar/main armhf libgstreamer1.0-0 armhf 1.20.4-1 [922 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf liborc-0.4-0 armhf 1:0.4.33-1 [160 kB] Get:44 http://ftpmaster.internal/ubuntu lunar/main armhf iso-codes all 4.12.0-1 [3440 kB] Get:45 http://ftpmaster.internal/ubuntu lunar/main armhf libgstreamer-plugins-base1.0-0 armhf 1.20.4-1 [766 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main armhf libhyphen0 armhf 2.8.8-7build2 [25.9 kB] Get:47 http://ftpmaster.internal/ubuntu lunar/main armhf libicu71 armhf 71.1-3ubuntu1 [10.3 MB] Get:48 http://ftpmaster.internal/ubuntu lunar/main armhf libjpeg-turbo8 armhf 2.1.2-0ubuntu1 [116 kB] Get:49 http://ftpmaster.internal/ubuntu lunar/main armhf libjpeg8 armhf 8c-2ubuntu10 [2266 B] Get:50 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [588 kB] Get:51 http://ftpmaster.internal/ubuntu lunar/main armhf shared-mime-info armhf 2.2-1 [457 kB] Get:52 http://ftpmaster.internal/ubuntu lunar/universe armhf libdouble-conversion3 armhf 3.2.1-1 [37.7 kB] Get:53 http://ftpmaster.internal/ubuntu lunar/main armhf libpcre2-16-0 armhf 10.40-1ubuntu1 [179 kB] Get:54 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5core5a armhf 5.15.7+dfsg-2 [1703 kB] Get:55 http://ftpmaster.internal/ubuntu lunar/main armhf libbrotli1 armhf 1.0.9-2build7 [295 kB] Get:56 http://ftpmaster.internal/ubuntu lunar/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [324 kB] Get:57 http://ftpmaster.internal/ubuntu lunar/main armhf ucf all 3.0043 [56.1 kB] Get:58 http://ftpmaster.internal/ubuntu lunar/main armhf fonts-dejavu-core all 2.37-2build2 [1137 kB] Get:59 http://ftpmaster.internal/ubuntu lunar/main armhf fontconfig-config all 2.13.1-4.4ubuntu1 [28.2 kB] Get:60 http://ftpmaster.internal/ubuntu lunar/main armhf libfontconfig1 armhf 2.13.1-4.4ubuntu1 [107 kB] Get:61 http://ftpmaster.internal/ubuntu lunar/main armhf fontconfig armhf 2.13.1-4.4ubuntu1 [181 kB] Get:62 http://ftpmaster.internal/ubuntu lunar/main armhf libgraphite2-3 armhf 1.3.14-1build2 [65.2 kB] Get:63 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libharfbuzz0b armhf 5.3.1-2 [383 kB] Get:64 http://ftpmaster.internal/ubuntu lunar/main armhf x11-common all 1:7.7+23ubuntu2 [23.4 kB] Get:65 http://ftpmaster.internal/ubuntu lunar/main armhf libice6 armhf 2:1.0.10-1build2 [36.4 kB] Get:66 http://ftpmaster.internal/ubuntu lunar/main armhf libevdev2 armhf 1.13.0+dfsg-1 [28.4 kB] Get:67 http://ftpmaster.internal/ubuntu lunar/main armhf libmtdev1 armhf 1.1.6-1build4 [13.3 kB] Get:68 http://ftpmaster.internal/ubuntu lunar/main armhf libgudev-1.0-0 armhf 1:237-2build1 [13.9 kB] Get:69 http://ftpmaster.internal/ubuntu lunar/main armhf libwacom-common all 2.5.0-1 [57.5 kB] Get:70 http://ftpmaster.internal/ubuntu lunar/main armhf libwacom9 armhf 2.5.0-1 [19.1 kB] Get:71 http://ftpmaster.internal/ubuntu lunar/main armhf libinput-bin armhf 1.22.0-1 [21.4 kB] Get:72 http://ftpmaster.internal/ubuntu lunar/main armhf libinput10 armhf 1.22.0-1 [115 kB] Get:73 http://ftpmaster.internal/ubuntu lunar/universe armhf libmd4c0 armhf 0.4.8-1 [37.9 kB] Get:74 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libdbus-1-3 armhf 1.14.4-1ubuntu1 [183 kB] Get:75 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5dbus5 armhf 5.15.7+dfsg-2 [197 kB] Get:76 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5network5 armhf 5.15.7+dfsg-2 [651 kB] Get:77 http://ftpmaster.internal/ubuntu lunar/main armhf libsm6 armhf 2:1.2.3-1build2 [15.1 kB] Get:78 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-icccm4 armhf 0.4.1-1.1build2 [10.1 kB] Get:79 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-shm0 armhf 1.15-1 [5852 B] Get:80 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-util1 armhf 0.4.0-1build2 [9986 B] Get:81 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-image0 armhf 0.4.0-2 [10.1 kB] Get:82 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-keysyms1 armhf 0.4.0-1build3 [7958 B] Get:83 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-randr0 armhf 1.15-1 [16.8 kB] Get:84 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-render0 armhf 1.15-1 [15.2 kB] Get:85 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-render-util0 armhf 0.3.9-1build3 [9258 B] Get:86 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-shape0 armhf 1.15-1 [6024 B] Get:87 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-xinerama0 armhf 1.15-1 [5200 B] Get:88 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-xinput0 armhf 1.15-1 [29.6 kB] Get:89 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-xkb1 armhf 1.15-1 [28.8 kB] Get:90 http://ftpmaster.internal/ubuntu lunar/main armhf xkb-data all 2.35.1-1 [393 kB] Get:91 http://ftpmaster.internal/ubuntu lunar/main armhf libxkbcommon0 armhf 1.4.1-1 [105 kB] Get:92 http://ftpmaster.internal/ubuntu lunar/main armhf libxkbcommon-x11-0 armhf 1.4.1-1 [13.5 kB] Get:93 http://ftpmaster.internal/ubuntu lunar/main armhf libxrender1 armhf 1:0.9.10-1.1 [16.5 kB] Get:94 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5gui5 armhf 5.15.7+dfsg-2 [2904 kB] Get:95 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5positioning5 armhf 5.15.7+dfsg-2 [196 kB] Get:96 http://ftpmaster.internal/ubuntu lunar/main armhf libavahi-common-data armhf 0.8-6ubuntu1 [24.0 kB] Get:97 http://ftpmaster.internal/ubuntu lunar/main armhf libavahi-common3 armhf 0.8-6ubuntu1 [20.0 kB] Get:98 http://ftpmaster.internal/ubuntu lunar/main armhf libavahi-client3 armhf 0.8-6ubuntu1 [24.2 kB] Get:99 http://ftpmaster.internal/ubuntu lunar/main armhf libcups2 armhf 2.4.2-1ubuntu2 [229 kB] Get:100 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5widgets5 armhf 5.15.7+dfsg-2 [2251 kB] Get:101 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5printsupport5 armhf 5.15.7+dfsg-2 [191 kB] Get:102 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5qml5 armhf 5.15.7+dfsg-2 [1318 kB] Get:103 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5qmlmodels5 armhf 5.15.7+dfsg-2 [175 kB] Get:104 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5quick5 armhf 5.15.7+dfsg-2 [1500 kB] Get:105 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5sensors5 armhf 5.15.7-2 [104 kB] Get:106 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5webchannel5 armhf 5.15.7-2 [53.8 kB] Get:107 http://ftpmaster.internal/ubuntu lunar/main armhf libwebp7 armhf 1.2.2-2build1 [165 kB] Get:108 http://ftpmaster.internal/ubuntu lunar/main armhf libwoff1 armhf 1.0.2-2 [38.2 kB] Get:109 http://ftpmaster.internal/ubuntu lunar/main armhf libxslt1.1 armhf 1.1.35-1 [147 kB] Get:110 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5webkit5 armhf 5.212.0~alpha4-28 [10.5 MB] Get:111 http://ftpmaster.internal/ubuntu lunar/main armhf bsdextrautils armhf 2.38.1-4ubuntu1 [76.4 kB] Get:112 http://ftpmaster.internal/ubuntu lunar/main armhf libmagic-mgc armhf 1:5.41-4 [257 kB] Get:113 http://ftpmaster.internal/ubuntu lunar/main armhf libmagic1 armhf 1:5.41-4 [80.1 kB] Get:114 http://ftpmaster.internal/ubuntu lunar/main armhf file armhf 1:5.41-4 [20.6 kB] Get:115 http://ftpmaster.internal/ubuntu lunar/main armhf gettext-base armhf 0.21-10 [37.3 kB] Get:116 http://ftpmaster.internal/ubuntu lunar/main armhf libuchardet0 armhf 0.0.7-1build2 [75.7 kB] Get:117 http://ftpmaster.internal/ubuntu lunar/main armhf groff-base armhf 1.22.4-9 [849 kB] Get:118 http://ftpmaster.internal/ubuntu lunar/main armhf libedit2 armhf 3.1-20221030-2 [78.3 kB] Get:119 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libnghttp2-14 armhf 1.51.0-1 [66.6 kB] Get:120 http://ftpmaster.internal/ubuntu lunar/main armhf libpipeline1 armhf 1.5.7-1 [26.2 kB] Get:121 http://ftpmaster.internal/ubuntu lunar/main armhf libpsl5 armhf 0.21.0-1.2build2 [56.9 kB] Get:122 http://ftpmaster.internal/ubuntu lunar/main armhf libuv1 armhf 1.44.2-1 [76.2 kB] Get:123 http://ftpmaster.internal/ubuntu lunar/main armhf libxext6 armhf 2:1.3.4-1build1 [26.4 kB] Get:124 http://ftpmaster.internal/ubuntu lunar/main armhf man-db armhf 2.11.1-1 [1183 kB] Get:125 http://ftpmaster.internal/ubuntu lunar/main armhf autoconf all 2.71-2 [338 kB] Get:126 http://ftpmaster.internal/ubuntu lunar/main armhf autotools-dev all 20220109.1 [44.9 kB] Get:127 http://ftpmaster.internal/ubuntu lunar/main armhf automake all 1:1.16.5-1.3 [558 kB] Get:128 http://ftpmaster.internal/ubuntu lunar/main armhf autopoint all 0.21-10 [421 kB] Get:129 http://ftpmaster.internal/ubuntu lunar/main armhf bison armhf 2:3.8.2+dfsg-1build1 [731 kB] Get:130 http://ftpmaster.internal/ubuntu lunar/universe armhf chrpath armhf 0.16-2 [11.9 kB] Get:131 http://ftpmaster.internal/ubuntu lunar/main armhf libarchive13 armhf 3.6.0-1ubuntu1 [338 kB] Get:132 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-6ubuntu3 [18.6 kB] Get:133 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libsasl2-2 armhf 2.1.28+dfsg-6ubuntu3 [52.4 kB] Get:134 http://ftpmaster.internal/ubuntu lunar/main armhf libldap2 armhf 2.6.3+dfsg-1~exp1ubuntu1 [161 kB] Get:135 http://ftpmaster.internal/ubuntu lunar/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2build4 [52.8 kB] Get:136 http://ftpmaster.internal/ubuntu lunar/main armhf libssh-4 armhf 0.10.4-2 [163 kB] Get:137 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libcurl4 armhf 7.86.0-2build1 [252 kB] Get:138 http://ftpmaster.internal/ubuntu lunar/main armhf libjsoncpp25 armhf 1.9.5-4 [72.3 kB] Get:139 http://ftpmaster.internal/ubuntu lunar/main armhf librhash0 armhf 1.4.3-3 [142 kB] Get:140 http://ftpmaster.internal/ubuntu lunar/main armhf cmake-data all 3.25.1-1 [2049 kB] Get:141 http://ftpmaster.internal/ubuntu lunar/main armhf cmake armhf 3.25.1-1 [4975 kB] Get:142 http://ftpmaster.internal/ubuntu lunar/main armhf libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:143 http://ftpmaster.internal/ubuntu lunar/main armhf libtool all 2.4.7-5 [166 kB] Get:144 http://ftpmaster.internal/ubuntu lunar/main armhf dh-autoreconf all 20 [16.1 kB] Get:145 http://ftpmaster.internal/ubuntu lunar/main armhf libarchive-zip-perl all 1.68-1 [90.2 kB] Get:146 http://ftpmaster.internal/ubuntu lunar/main armhf libsub-override-perl all 0.09-4 [8706 B] Get:147 http://ftpmaster.internal/ubuntu lunar/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:148 http://ftpmaster.internal/ubuntu lunar/main armhf dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:149 http://ftpmaster.internal/ubuntu lunar/main armhf debugedit armhf 1:5.0-5 [42.8 kB] Get:150 http://ftpmaster.internal/ubuntu lunar/main armhf dwz armhf 0.14+20220924-2 [109 kB] Get:151 http://ftpmaster.internal/ubuntu lunar/main armhf gettext armhf 0.21-10 [802 kB] Get:152 http://ftpmaster.internal/ubuntu lunar/main armhf intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:153 http://ftpmaster.internal/ubuntu lunar/main armhf po-debconf all 1.0.21+nmu1 [233 kB] Get:154 http://ftpmaster.internal/ubuntu lunar/main armhf debhelper all 13.10.1ubuntu1 [924 kB] Get:155 http://ftpmaster.internal/ubuntu lunar/main armhf python3-lib2to3 all 3.10.8-1 [77.5 kB] Get:156 http://ftpmaster.internal/ubuntu lunar/main armhf python3-distutils all 3.10.8-1 [139 kB] Get:157 http://ftpmaster.internal/ubuntu lunar/universe armhf dh-python all 5.20221205 [101 kB] Get:158 http://ftpmaster.internal/ubuntu lunar/main armhf icu-devtools armhf 71.1-3ubuntu1 [189 kB] Get:159 http://ftpmaster.internal/ubuntu lunar/main armhf libasound2-data all 1.2.8-1 [19.4 kB] Get:160 http://ftpmaster.internal/ubuntu lunar/main armhf libasound2 armhf 1.2.8-1 [342 kB] Get:161 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost1.74-dev armhf 1.74.0-18ubuntu1 [9589 kB] Get:162 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-atomic1.74.0 armhf 1.74.0-18ubuntu1 [222 kB] Get:163 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-atomic1.74-dev armhf 1.74.0-18ubuntu1 [221 kB] Get:164 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-chrono1.74.0 armhf 1.74.0-18ubuntu1 [227 kB] Get:165 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-chrono1.74-dev armhf 1.74.0-18ubuntu1 [232 kB] Get:166 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-date-time1.74.0 armhf 1.74.0-18ubuntu1 [220 kB] Get:167 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-serialization1.74.0 armhf 1.74.0-18ubuntu1 [311 kB] Get:168 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-serialization1.74-dev armhf 1.74.0-18ubuntu1 [386 kB] Get:169 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-date-time1.74-dev armhf 1.74.0-18ubuntu1 [226 kB] Get:170 http://ftpmaster.internal/ubuntu lunar/main armhf libboost-dev armhf 1.74.0.3ubuntu7 [3490 B] Get:171 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-regex1.74.0 armhf 1.74.0-18ubuntu1 [461 kB] Get:172 http://ftpmaster.internal/ubuntu lunar/main armhf libicu-dev armhf 71.1-3ubuntu1 [11.3 MB] Get:173 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-regex1.74-dev armhf 1.74.0-18ubuntu1 [585 kB] Get:174 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-iostreams1.74.0 armhf 1.74.0-18ubuntu1 [240 kB] Get:175 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libboost-iostreams1.74-dev armhf 1.74.0-18ubuntu1 [250 kB] Get:176 http://ftpmaster.internal/ubuntu lunar/universe armhf libboost-iostreams-dev armhf 1.74.0.3ubuntu7 [3238 B] Get:177 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-system1.74.0 armhf 1.74.0-18ubuntu1 [220 kB] Get:178 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-system1.74-dev armhf 1.74.0-18ubuntu1 [218 kB] Get:179 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-thread1.74.0 armhf 1.74.0-18ubuntu1 [254 kB] Get:180 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libboost-thread1.74-dev armhf 1.74.0-18ubuntu1 [268 kB] Get:181 http://ftpmaster.internal/ubuntu lunar/main armhf libboost-thread-dev armhf 1.74.0.3ubuntu7 [3266 B] Get:182 http://ftpmaster.internal/ubuntu lunar/main armhf libllvm15 armhf 1:15.0.6-3 [24.1 MB] Get:183 http://ftpmaster.internal/ubuntu lunar/universe armhf libclang1-15 armhf 1:15.0.6-3 [6378 kB] Get:184 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm-amdgpu1 armhf 2.4.114-1 [18.3 kB] Get:185 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm-nouveau2 armhf 2.4.114-1 [15.2 kB] Get:186 http://ftpmaster.internal/ubuntu lunar/main armhf libdrm-radeon1 armhf 2.4.114-1 [18.1 kB] Get:187 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb-glx0 armhf 1.15-1 [22.6 kB] Get:188 http://ftpmaster.internal/ubuntu lunar/main armhf libxfixes3 armhf 1:6.0.0-2 [8966 B] Get:189 http://ftpmaster.internal/ubuntu lunar/main armhf libxxf86vm1 armhf 1:1.1.4-1build3 [9068 B] Get:190 http://ftpmaster.internal/ubuntu lunar/main armhf libsensors-config all 1:3.6.0-7ubuntu1 [5274 B] Get:191 http://ftpmaster.internal/ubuntu lunar/main armhf libsensors5 armhf 1:3.6.0-7ubuntu1 [24.3 kB] Get:192 http://ftpmaster.internal/ubuntu lunar/main armhf libgl1-mesa-dri armhf 22.2.5-0ubuntu1 [6385 kB] Get:193 http://ftpmaster.internal/ubuntu lunar/main armhf libglx-mesa0 armhf 22.2.5-0ubuntu1 [132 kB] Get:194 http://ftpmaster.internal/ubuntu lunar/main armhf libglx0 armhf 1.5.0-1 [36.9 kB] Get:195 http://ftpmaster.internal/ubuntu lunar/main armhf libgl1 armhf 1.5.0-1 [103 kB] Get:196 http://ftpmaster.internal/ubuntu lunar/main armhf xorg-sgml-doctools all 1:1.11-1.1 [10.9 kB] Get:197 http://ftpmaster.internal/ubuntu lunar/main armhf x11proto-dev all 2022.1-1 [605 kB] Get:198 http://ftpmaster.internal/ubuntu lunar/main armhf libxau-dev armhf 1:1.0.9-1build5 [8928 B] Get:199 http://ftpmaster.internal/ubuntu lunar/main armhf libxdmcp-dev armhf 1:1.1.3-0ubuntu5 [25.0 kB] Get:200 http://ftpmaster.internal/ubuntu lunar/main armhf xtrans-dev all 1.4.0-1 [68.9 kB] Get:201 http://ftpmaster.internal/ubuntu lunar/main armhf libpthread-stubs0-dev armhf 0.4-1build2 [5504 B] Get:202 http://ftpmaster.internal/ubuntu lunar/main armhf libxcb1-dev armhf 1.15-1 [84.6 kB] Get:203 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf libx11-dev armhf 2:1.8.3-2 [669 kB] Get:204 http://ftpmaster.internal/ubuntu lunar/main armhf libglx-dev armhf 1.5.0-1 [14.1 kB] Get:205 http://ftpmaster.internal/ubuntu lunar/main armhf libgl-dev armhf 1.5.0-1 [102 kB] Get:206 http://ftpmaster.internal/ubuntu lunar/main armhf libegl-dev armhf 1.5.0-1 [18.1 kB] Get:207 http://ftpmaster.internal/ubuntu lunar/main armhf libevent-2.1-7a armhf 2.1.12-stable-5ubuntu1 [125 kB] Get:208 http://ftpmaster.internal/ubuntu lunar/main armhf libexpat1-dev armhf 2.5.0-1 [120 kB] Get:209 http://ftpmaster.internal/ubuntu lunar/main armhf libgles1 armhf 1.5.0-1 [11.4 kB] Get:210 http://ftpmaster.internal/ubuntu lunar/main armhf libgles-dev armhf 1.5.0-1 [49.4 kB] Get:211 http://ftpmaster.internal/ubuntu lunar/universe armhf libglew2.2 armhf 2.2.0-4 [214 kB] Get:212 http://ftpmaster.internal/ubuntu lunar/main armhf libopengl0 armhf 1.5.0-1 [36.6 kB] Get:213 http://ftpmaster.internal/ubuntu lunar/main armhf libglu1-mesa armhf 9.0.2-1.1 [152 kB] Get:214 http://ftpmaster.internal/ubuntu lunar/main armhf libopengl-dev armhf 1.5.0-1 [3402 B] Get:215 http://ftpmaster.internal/ubuntu lunar/main armhf libglu1-mesa-dev armhf 9.0.2-1.1 [196 kB] Get:216 http://ftpmaster.internal/ubuntu lunar/universe armhf libglew-dev armhf 2.2.0-4 [327 kB] Get:217 http://ftpmaster.internal/ubuntu lunar/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] Get:218 http://ftpmaster.internal/ubuntu lunar/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-2 [118 kB] Get:219 http://ftpmaster.internal/ubuntu lunar/main armhf libjs-sphinxdoc all 5.3.0-2 [129 kB] Get:220 http://ftpmaster.internal/ubuntu lunar/main armhf liblcms2-2 armhf 2.13.1-1 [131 kB] Get:221 http://ftpmaster.internal/ubuntu lunar/universe armhf libminizip1 armhf 1.1-8build1 [18.5 kB] Get:222 http://ftpmaster.internal/ubuntu lunar/main armhf libnspr4 armhf 2:4.35-1 [92.8 kB] Get:223 http://ftpmaster.internal/ubuntu lunar/main armhf libnss3 armhf 2:3.85-1 [1226 kB] Get:224 http://ftpmaster.internal/ubuntu lunar/main armhf libopus0 armhf 1.3.1-2 [189 kB] Get:225 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libpkgconf3 armhf 1.8.0-12 [24.2 kB] Get:226 http://ftpmaster.internal/ubuntu lunar/main armhf libpython3.10 armhf 3.10.9-1 [1704 kB] Get:227 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1ubuntu3 [880 kB] Get:228 http://ftpmaster.internal/ubuntu lunar/main armhf libpython3.10-dev armhf 3.10.9-1 [3532 kB] Get:229 http://ftpmaster.internal/ubuntu lunar/main armhf libpython3-dev armhf 3.10.6-1ubuntu1 [7128 B] Get:230 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5concurrent5 armhf 5.15.7+dfsg-2 [34.2 kB] Get:231 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5xml5 armhf 5.15.7+dfsg-2 [108 kB] Get:232 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5designer5 armhf 5.15.7-2 [2721 kB] Get:233 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5designercomponents5 armhf 5.15.7-2 [704 kB] Get:234 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5sql5 armhf 5.15.7+dfsg-2 [107 kB] Get:235 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5help5 armhf 5.15.7-2 [141 kB] Get:236 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5opengl5 armhf 5.15.7+dfsg-2 [126 kB] Get:237 http://ftpmaster.internal/ubuntu 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libqt5opengl5-dev armhf 5.15.7+dfsg-2 [42.2 kB] Get:247 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5positioning5-plugins armhf 5.15.7+dfsg-2 [63.1 kB] Get:248 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5positioningquick5 armhf 5.15.7+dfsg-2 [39.3 kB] Get:249 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5qmlworkerscript5 armhf 5.15.7+dfsg-2 [30.8 kB] Get:250 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5quickparticles5 armhf 5.15.7+dfsg-2 [195 kB] Get:251 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5quickshapes5 armhf 5.15.7+dfsg-2 [86.8 kB] Get:252 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5quicktest5 armhf 5.15.7+dfsg-2 [51.7 kB] Get:253 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5quickwidgets5 armhf 5.15.7+dfsg-2 [35.0 kB] Get:254 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5sql5-sqlite armhf 5.15.7+dfsg-2 [47.2 kB] Get:255 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qt5-qmltooling-plugins armhf 5.15.7+dfsg-2 [168 kB] Get:256 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qtdeclarative5-dev-tools armhf 5.15.7+dfsg-2 [593 kB] Get:257 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qtdeclarative5-dev armhf 5.15.7+dfsg-2 [462 kB] Get:258 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5webchannel5-dev armhf 5.15.7-2 [9136 B] Get:259 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5webengine-data all 5.15.11+dfsg-5 [7619 kB] Get:260 http://ftpmaster.internal/ubuntu lunar/main armhf libre2-9 armhf 20220601+dfsg-1 [161 kB] Get:261 http://ftpmaster.internal/ubuntu lunar/main armhf libsnappy1v5 armhf 1.1.9-2 [25.1 kB] Get:262 http://ftpmaster.internal/ubuntu lunar/main armhf libvpx7 armhf 1.12.0-1ubuntu1 [1409 kB] Get:263 http://ftpmaster.internal/ubuntu lunar/main armhf libwebpdemux2 armhf 1.2.2-2build1 [8822 B] Get:264 http://ftpmaster.internal/ubuntu lunar/main armhf libwebpmux3 armhf 1.2.2-2build1 [16.6 kB] Get:265 http://ftpmaster.internal/ubuntu lunar/main armhf libxcomposite1 armhf 1:0.4.5-1build2 [6520 B] Get:266 http://ftpmaster.internal/ubuntu lunar/main armhf libxdamage1 armhf 1:1.1.5-2build2 [6320 B] Get:267 http://ftpmaster.internal/ubuntu lunar/main armhf libxrandr2 armhf 2:1.5.2-2 [16.4 kB] Get:268 http://ftpmaster.internal/ubuntu lunar/main armhf libxtst6 armhf 2:1.2.3-1.1 [11.8 kB] Get:269 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5webenginecore5 armhf 5.15.11+dfsg-5 [41.1 MB] Get:270 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5webengine5 armhf 5.15.11+dfsg-5 [155 kB] Get:271 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf libqt5webenginewidgets5 armhf 5.15.11+dfsg-5 [108 kB] Get:272 http://ftpmaster.internal/ubuntu lunar/main armhf libtidy5deb1 armhf 2:5.6.0-11build2 [201 kB] Get:273 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf pkgconf-bin armhf 1.8.0-12 [20.5 kB] Get:274 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf pkgconf armhf 1.8.0-12 [16.4 kB] Get:275 http://ftpmaster.internal/ubuntu lunar-proposed/main armhf pkg-config armhf 1.8.0-12 [5194 B] Get:276 http://ftpmaster.internal/ubuntu lunar/main armhf python3.10-dev armhf 3.10.9-1 [507 kB] Get:277 http://ftpmaster.internal/ubuntu lunar/main armhf python3-dev armhf 3.10.6-1ubuntu1 [26.0 kB] Get:278 http://ftpmaster.internal/ubuntu lunar/universe armhf python3-sip armhf 4.19.25+dfsg-5 [93.1 kB] Get:279 http://ftpmaster.internal/ubuntu lunar/universe armhf sip-dev armhf 4.19.25+dfsg-5 [171 kB] Get:280 http://ftpmaster.internal/ubuntu lunar/universe armhf python3-sip-dev armhf 4.19.25+dfsg-5 [22.8 kB] Get:281 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qdoc-qt5 armhf 5.15.7-2 [573 kB] Get:282 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qhelpgenerator-qt5 armhf 5.15.7-2 [53.7 kB] Get:283 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qt5-assistant armhf 5.15.7-2 [347 kB] Get:284 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qtattributionsscanner-qt5 armhf 5.15.7-2 [29.8 kB] Get:285 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qtpositioning5-dev armhf 5.15.7+dfsg-2 [19.1 kB] Get:286 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qttools5-dev-tools armhf 5.15.7-2 [1026 kB] Get:287 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qttools5-dev armhf 5.15.7-2 [195 kB] Get:288 http://ftpmaster.internal/ubuntu lunar-proposed/universe armhf qtwebengine5-dev armhf 5.15.11+dfsg-5 [63.9 kB] Get:289 http://ftpmaster.internal/ubuntu lunar/universe armhf tidy armhf 2:5.6.0-11build2 [28.1 kB] Get:290 http://ftpmaster.internal/ubuntu lunar/universe armhf libeigen3-dev all 3.4.0-2ubuntu2 [1056 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 207 MB in 1min 32s (2251 kB/s) Selecting previously unselected package libpython3.10-minimal:armhf. (Reading database ... 15315 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.9-1_armhf.deb ... Unpacking libpython3.10-minimal:armhf (3.10.9-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.9-1_armhf.deb ... Unpacking python3.10-minimal (3.10.9-1) ... Setting up libpython3.10-minimal:armhf (3.10.9-1) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.10-minimal (3.10.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15618 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.6-1ubuntu1_armhf.deb ... Unpacking python3-minimal (3.10.6-1ubuntu1) ... Selecting previously unselected package media-types. 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Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.114-1) ... Setting up libxdamage1:armhf (1:1.1.5-2build2) ... Setting up libxcb1-dev:armhf (1.15-1) ... Setting up python3.10 (3.10.9-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up libgbm1:armhf (22.2.5-0ubuntu1) ... Setting up libdrm-radeon1:armhf (2.4.114-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libqt5positioning5:armhf (5.15.7+dfsg-2) ... Setting up libgl1-mesa-dri:armhf (22.2.5-0ubuntu1) ... Setting up libx11-dev:armhf (2:1.8.3-2) ... Setting up libxext6:armhf (2:1.3.4-1build1) ... Setting up libgstreamer-plugins-base1.0-0:armhf (1.20.4-1) ... Setting up python3 (3.10.6-1ubuntu1) ... Setting up libclang1-15 (1:15.0.6-3) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libqt5network5:armhf (5.15.7+dfsg-2) ... 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Setting up libqt5positioning5-plugins:armhf (5.15.7+dfsg-2) ... Setting up python3-lib2to3 (3.10.8-1) ... Setting up libboost-thread-dev:armhf (1.74.0.3ubuntu7) ... Setting up python3-sip (4.19.25+dfsg-5) ... Setting up python3-distutils (3.10.8-1) ... Setting up dh-python (5.20221205) ... Setting up libvulkan-dev:armhf (1.3.231.1-1) ... Setting up libqt5qmlmodels5:armhf (5.15.7+dfsg-2) ... Setting up libglx-mesa0:armhf (22.2.5-0ubuntu1) ... Setting up libpython3-dev:armhf (3.10.6-1ubuntu1) ... Setting up libqt5sql5-sqlite:armhf (5.15.7+dfsg-2) ... Setting up libglx0:armhf (1.5.0-1) ... Setting up qdoc-qt5 (5.15.7-2) ... Setting up libxtst6:armhf (2:1.2.3-1.1) ... Setting up libqt5gui5:armhf (5.15.7+dfsg-2) ... Setting up debhelper (13.10.1ubuntu1) ... Setting up libqt5widgets5:armhf (5.15.7+dfsg-2) ... Setting up libboost-iostreams-dev:armhf (1.74.0.3ubuntu7) ... Setting up libqt5help5:armhf (5.15.7-2) ... Setting up libqt5qmlworkerscript5:armhf (5.15.7+dfsg-2) ... Setting up libqt5printsupport5:armhf (5.15.7+dfsg-2) ... Setting up libgl1:armhf (1.5.0-1) ... Setting up python3-dev (3.10.6-1ubuntu1) ... Setting up libglew2.2:armhf (2.2.0-4) ... Setting up libqt5opengl5:armhf (5.15.7+dfsg-2) ... Setting up libglx-dev:armhf (1.5.0-1) ... Setting up libqt5quick5:armhf (5.15.7+dfsg-2) ... Setting up libgl-dev:armhf (1.5.0-1) ... Setting up libqt5quickshapes5:armhf (5.15.7+dfsg-2) ... Setting up libqt5quicktest5:armhf (5.15.7+dfsg-2) ... Setting up libqt5positioningquick5:armhf (5.15.7+dfsg-2) ... Setting up libqt5designer5:armhf (5.15.7-2) ... Setting up libegl-dev:armhf (1.5.0-1) ... Setting up qtdeclarative5-dev-tools (5.15.7+dfsg-2) ... Setting up python3-sip-dev (4.19.25+dfsg-5) ... Setting up qhelpgenerator-qt5 (5.15.7-2) ... Setting up libqt5webkit5:armhf (5.212.0~alpha4-28) ... Setting up libqt5designercomponents5:armhf (5.15.7-2) ... Setting up qt5-qmltooling-plugins:armhf (5.15.7+dfsg-2) ... Setting up libqt5quickwidgets5:armhf (5.15.7+dfsg-2) ... Setting up libglu1-mesa-dev:armhf (9.0.2-1.1) ... Setting up qt5-assistant (5.15.7-2) ... Setting up qttools5-dev-tools (5.15.7-2) ... Setting up libqt5webenginecore5:armhf (5.15.11+dfsg-5) ... Setting up libqt5quickparticles5:armhf (5.15.7+dfsg-2) ... Setting up libgles-dev:armhf (1.5.0-1) ... Setting up libglew-dev:armhf (2.2.0-4) ... Setting up libqt5webengine5:armhf (5.15.11+dfsg-5) ... Setting up libqt5webenginewidgets5:armhf (5.15.11+dfsg-5) ... Setting up qtbase5-dev:armhf (5.15.7+dfsg-2) ... Setting up qtdeclarative5-dev:armhf (5.15.7+dfsg-2) ... Setting up libqt5opengl5-dev:armhf (5.15.7+dfsg-2) ... Setting up qtpositioning5-dev:armhf (5.15.7+dfsg-2) ... Setting up qttools5-dev:armhf (5.15.7-2) ... Setting up libqt5webchannel5-dev:armhf (5.15.7-2) ... Setting up qtwebengine5-dev:armhf (5.15.11+dfsg-5) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (252.1-1ubuntu1) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:19:17 UTC 2022 arm64 (armv7l) Toolchain package versions: binutils_2.39.50.20221211-0ubuntu1 dpkg-dev_1.21.12ubuntu2 g++-12_12.2.0-10ubuntu1 gcc-12_12.2.0-10ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 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python3.10-minimal_3.10.9-1 qdoc-qt5_5.15.7-2 qhelpgenerator-qt5_5.15.7-2 qt5-assistant_5.15.7-2 qt5-qmake_5.15.7+dfsg-2 qt5-qmake-bin_5.15.7+dfsg-2 qt5-qmltooling-plugins_5.15.7+dfsg-2 qtattributionsscanner-qt5_5.15.7-2 qtbase5-dev_5.15.7+dfsg-2 qtbase5-dev-tools_5.15.7+dfsg-2 qtchooser_66-2build1 qtdeclarative5-dev_5.15.7+dfsg-2 qtdeclarative5-dev-tools_5.15.7+dfsg-2 qtpositioning5-dev_5.15.7+dfsg-2 qttools5-dev_5.15.7-2 qttools5-dev-tools_5.15.7-2 qtwebengine5-dev_5.15.11+dfsg-5 readline-common_8.2-1.2 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 shared-mime-info_2.2-1 sip-dev_4.19.25+dfsg-5 systemd_252.1-1ubuntu1 systemd-sysv_252.1-1ubuntu1 sysvinit-utils_3.05-7ubuntu1 tar_1.34+dfsg-1.1 tidy_2:5.6.0-11build2 tzdata_2022g-0ubuntu2 ubuntu-keyring_2021.03.26 ucf_3.0043 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 x11-common_1:7.7+23ubuntu2 x11proto-dev_2022.1-1 xkb-data_2.35.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.4.0-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu3 zlib1g-dev_1:1.2.13.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ball Binary: libball1.5-data, libball1.5, libball1.5-dev, libballview1.5, libballview1.5-dev, ballview, libball1.5-doc Architecture: any all Version: 1.5.0+git20180813.37fc53c-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: http://www.ball-project.org/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/ball Vcs-Git: https://salsa.debian.org/med-team/ball.git Build-Depends: debhelper-compat (= 13), dh-python, qtbase5-dev, libqt5opengl5-dev, python3-sip-dev, flex, bison, cmake, qtwebengine5-dev [amd64 arm64 armhf i386 mipsel mips64el], qttools5-dev, libeigen3-dev, python3-dev, libboost-dev, libboost-iostreams-dev, libboost-thread-dev, libglew-dev, libx11-dev, tidy, chrpath, libtirpc-dev Build-Depends-Indep: doxygen, graphviz, ghostscript, texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra Package-List: ballview deb science optional arch=any libball1.5 deb libs optional arch=any libball1.5-data deb science optional arch=all libball1.5-dev deb libdevel optional arch=any libball1.5-doc deb doc optional arch=all libballview1.5 deb libs optional arch=any libballview1.5-dev deb libdevel optional arch=any Checksums-Sha1: 696a5708b583fdd96051e4496c3a4d8e188f349d 21325220 ball_1.5.0+git20180813.37fc53c.orig.tar.xz 4a7ec0b9d29b441b0d8b2ec53de2355c18c2032d 18144 ball_1.5.0+git20180813.37fc53c-11.debian.tar.xz Checksums-Sha256: 88e95068ced3bb8f50440dd22d3dd9aa56c6d7653a5a978ec163daafd1d90720 21325220 ball_1.5.0+git20180813.37fc53c.orig.tar.xz 458ac144d081a7219aed35a0fdfbdc30689b41ad18f41b6269ca3240e47555b0 18144 ball_1.5.0+git20180813.37fc53c-11.debian.tar.xz Files: 1a3777fbe23ce81cc89c2fa53de4af9c 21325220 ball_1.5.0+git20180813.37fc53c.orig.tar.xz 53f2bdf1a1ffe886dc191a80f3b1a5ad 18144 ball_1.5.0+git20180813.37fc53c-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY6MstAAKCRAqJ5BL1yQ+ 2oLbAP9LMFFfyG5EEK7em8k0n5/TVOa2hlHR47jjn8weotGvrQEAzIFn58VnyG6L F32jlQOweU8WeHNguo+41Dln25Y6Rw8= =4e1Y -----END PGP SIGNATURE----- gpgv: Signature made Wed Dec 21 15:56:36 2022 UTC gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ball_1.5.0+git20180813.37fc53c-11.dsc: no acceptable signature found dpkg-source: info: extracting ball in /<> dpkg-source: info: unpacking ball_1.5.0+git20180813.37fc53c.orig.tar.xz dpkg-source: info: unpacking ball_1.5.0+git20180813.37fc53c-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying fix-ftbfs-char.patch dpkg-source: info: applying missing_GLEW dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-25415993 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-25415993 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-25415993 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package ball dpkg-buildpackage: info: source version 1.5.0+git20180813.37fc53c-11 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=cmake --builddirectory=build # --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' [ -d source ] && cd source ; \ if [ -f Makefile ] ; \ then \ make clean ; \ cd PYTHON/EXTENSIONS; \ make clean; \ rm -rf ../lib/Linux*; \ rm -rf ../doc/doxygen/latex/*; \ rm -f /<>/source/config.status 2>/dev/null; \ fi rm -f data/BALLView/translations/BALLView.de_DE.qm rm -f data/BALLView/translations/BALLView.zh_TW.qm rm -f doc/TUTORIAL/*.aux rm -rf build find . -name "*.o" | xargs -r rm find . -type l | xargs -r rm find doc/TUTORIAL/ -name "tutorial.*" | egrep -v ".(tex|bib)$" |xargs -r rm rm -f include/BALL/BALL.doc # find . -name "*.doc" -delete # Remove self-create UI header file rm -f include/BALL/VIEW/UIC/ui_assignBondOrderConfigurationDialog.h \ include/BALL/VIEW/UIC/ui_assignBondOrderResultsDialog.h \ include/BALL/VIEW/UIC/ui_atomOverview.h make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=cmake -O--builddirectory=build dh_clean -O--buildsystem=cmake -O--builddirectory=build rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libball1.5-data.substvars debian/libball1.5.substvars debian/libball1.5-dev.substvars debian/libballview1.5.substvars debian/libballview1.5-dev.substvars debian/ballview.substvars debian/libball1.5-doc.substvars debian/files rm -fr -- debian/libball1.5-data/ debian/tmp/ debian/libball1.5/ debian/libball1.5-dev/ debian/libballview1.5/ debian/libballview1.5-dev/ debian/ballview/ debian/libball1.5-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem=cmake --builddirectory=build # --with python3 dh_update_autotools_config -a -O--buildsystem=cmake -O--builddirectory=build dh_autoreconf -a -O--buildsystem=cmake -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' mkdir -p build cd build && LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -ltirpc" CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc" CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" \ cmake .. -DCMAKE_SOURCE_DIR=/<> -DCMAKE_INSTALL_PREFIX=./usr \ -DBALL_PATH=/usr -DBALL_DATA_PATH=/usr/share/BALL-1.5/data \ -DCMAKE_VERBOSE_MAKEFILE=ON CMake Deprecation Warning at CMakeLists.txt:10 (CMAKE_POLICY): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Compiler checks for conversion: OFF -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of size_t -- Check size of size_t - done -- Check size of void* -- Check size of void* - done -- Check size of unsigned short -- Check size of unsigned short - done -- Check size of unsigned int -- Check size of unsigned int - done -- Check size of unsigned long -- Check size of unsigned long - done -- Check size of unsigned long long -- Check size of unsigned long long - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Check size of uint64_t -- Check size of uint64_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Looking for C++ include unistd.h -- Looking for C++ include unistd.h - found -- Looking for C++ include process.h -- Looking for C++ include process.h - not found -- Looking for C++ include time.h -- Looking for C++ include time.h - found -- Looking for C++ include dirent.h -- Looking for C++ include dirent.h - found -- Looking for C++ include direct.h -- Looking for C++ include direct.h - not found -- Looking for C++ include pwd.h -- Looking for C++ include pwd.h - found -- Looking for C++ include stdint.h -- Looking for C++ include stdint.h - found -- Looking for C++ include sys/time.h -- Looking for C++ include sys/time.h - found -- Looking for C++ include sys/stat.h -- Looking for C++ include sys/stat.h - found -- Looking for C++ include sys/times.h -- Looking for C++ include sys/times.h - found -- Looking for C++ include sys/types.h -- Looking for C++ include sys/types.h - found -- Looking for C++ include sys/param.h -- Looking for C++ include sys/param.h - found -- Looking for C++ include sys/sysinfo.h -- Looking for C++ include sys/sysinfo.h - found -- Performing Test BALL_HAS_MODE_T -- Performing Test BALL_HAS_MODE_T - Success -- Looking for C++ include ieeefp.h -- Looking for C++ include ieeefp.h - not found -- Looking for kill -- Looking for kill - found -- Looking for sysconf -- Looking for sysconf - found -- Performing Test BALL_ALLOW_LONG64_TYPE_OVERLOADS -- Performing Test BALL_ALLOW_LONG64_TYPE_OVERLOADS - Success -- Performing Test BALL_HAS_THREAD_LOCAL -- Performing Test BALL_HAS_THREAD_LOCAL - Success -- Performing Test BALL_HAS_NOEXCEPT -- Performing Test BALL_HAS_NOEXCEPT - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_FUNCTIONS -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_FUNCTIONS - Success -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_INITLIST_INSERT -- Performing Test BALL_HAS_STD_STRING_CONST_ITERATOR_INITLIST_INSERT - Success -- Looking for vsnprintf -- Looking for vsnprintf - found -- [GCC only] STL debug mode: OFF -- Found BISON: /usr/bin/bison -- Found FLEX: /usr/bin/flex -- Checking for yylex_destroy support in flex -- Checking for yylex_destroy support in flex - Not found -- Looking for C++ include rpc/types.h -- Looking for C++ include rpc/types.h - found -- Performing Test XDR_HAS_RPC_XDR_H -- Performing Test XDR_HAS_RPC_XDR_H - Success -- Looking for xdr_int -- Looking for xdr_int - not found -- Looking for xdr_int in /usr/lib/arm-linux-gnueabihf/libnsl.so -- Looking for xdr_int in /usr/lib/arm-linux-gnueabihf/libnsl.so - not found CMake Warning at cmake/FindXDR.cmake:67 (MESSAGE): Could not locate xdr symbols in libc or libnsl. Persistence will be disabled! Call Stack (most recent call first): cmake/BALLConfigXDR.cmake:1 (FIND_PACKAGE) CMakeLists.txt:135 (INCLUDE) -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.55") found components: chrono date_time iostreams regex serialization system thread -- Could NOT find LPSolve (missing: LPSOLVE_LIBRARIES LPSOLVE_INCLUDE_PATH LPSOLVE_LINKS) -- Looking for math.h -- Looking for math.h - found CMake Warning (dev) at /usr/share/cmake-3.25/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (LibSVM) does not match the name of the calling package (libSVM). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindlibSVM.cmake:165 (find_package_handle_standard_args) CMakeLists.txt:196 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find LibSVM (missing: LIBSVM_LIBRARY LIBSVM_INCLUDE_DIR LIBSVM_INCLUDE_DIRS LIBSVM_ROOT_DIR) -- [Warning] FindTBB.cmake: The use of TBB_ARCHITECTURE and TBB_COMPILER is deprecated and may not be supported in future versions. Please set (using tbbvars.[bat|csh|sh]). -- Looked for Threading Building Blocks in /opt/intel/tbb;/usr/local/include;/usr/include;/usr -- Intel Threading Building Blocks not found! -- Checking for module 'mpi-c' -- Package 'mpi-c', required by 'virtual:world', not found -- Could NOT find MPI_C (missing: MPI_C_LIB_NAMES MPI_C_HEADER_DIR MPI_C_WORKS) -- Checking for module 'mpi-cxx' -- Package 'mpi-cxx', required by 'virtual:world', not found -- Could NOT find MPI_CXX (missing: MPI_CXX_LIB_NAMES MPI_CXX_HEADER_DIR MPI_CXX_WORKS) -- Could NOT find MPI (missing: MPI_C_FOUND MPI_CXX_FOUND) -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") CMake Warning (dev) at /usr/share/cmake-3.25/Modules/FindOpenGL.cmake:315 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/lib/arm-linux-gnueabihf/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/lib/arm-linux-gnueabihf/libOpenGL.so OPENGL_glx_LIBRARY: /usr/lib/arm-linux-gnueabihf/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): CMakeLists.txt:355 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenGL: /usr/lib/arm-linux-gnueabihf/libOpenGL.so -- Found GLEW: /usr/include (found version "2.2.0") -- Could not find RTfact header file (RTpie/IRayTracer.hpp)! Real time ray tracing will be disabled! -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.10.9", minimum required is "3") -- Found PythonLibs: /usr/lib/arm-linux-gnueabihf/libpython3.10.so (found suitable version "3.10.9", minimum required is "3") :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -- Found SIP version: 4.19.25 :1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives :1: DeprecationWarning: The distutils.sysconfig module is deprecated, use sysconfig instead -- Could NOT find SIP (missing: SIP_LIBRARIES) (Required is at least version "4.8") -- Disabling python support. -- Setting CTDSchema version to its default value (v1.7) -- Setting CTDConverter version to its default value (v2.0) -- Could not find SpaceNavigator libraries. Disabling the SpaceNavigator plugin -- Could not find VRPN libraries. Disabling the VRPN plugin -- Could not find VRPN libraries. Disabling the VRPNHD plugin -- Python support has not been enabled. Disabling the Jupyter plugin. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Doxygen not found. Disabling all documentation targets! -- Doxygen or Latex missing. Disabling 'tutorial' target! -- -- ----------------------------------------------------------------- -- -- You have successfully configured BALL. -- -- For a full list of make targets execute: -- 'make targets' -- -- ----------------------------------------------------------------- -- -- Configuring done -- Generating done -- Build files have been written to: /<>/build make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' ## Fix upstream issue of missing UI files ## ... ## Uhmmm, seems we need to do this for all UI files mentioned in ## source/VIEW/DIALOGS/sources.cmake ## but I really hope some cmake expert might be able to find a clue ## how to trigger cmake to do it as intended by upstream. ## Somehow the code ## ADD_BALL_UIFILES("VIEW/DIALOGS" "") ## needs to be called before the build code below can be started make -C build BALL VIEW BALLView build_tests install make[2]: Entering directory '/<>/build' /usr/bin/cmake -S/<> -B/<>/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 BALL make[3]: Entering directory '/<>/build' /usr/bin/cmake -S/<> -B/<>/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/CMakeFiles 21 make -f CMakeFiles/Makefile2 CMakeFiles/BALL.dir/all make[4]: Entering directory '/<>/build' make -f CMakeFiles/BALL_autogen.dir/build.make CMakeFiles/BALL_autogen.dir/depend make[5]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build /<>/build /<>/build/CMakeFiles/BALL_autogen.dir/DependInfo.cmake --color= make[5]: Leaving directory '/<>/build' make -f CMakeFiles/BALL_autogen.dir/build.make CMakeFiles/BALL_autogen.dir/build make[5]: Entering directory '/<>/build' [ 0%] [BISON][smilesParserParser] Building parser with bison 3.8.2 cd /<> && /usr/bin/bison --defines=/<>/build/source/STRUCTURE/smilesParserParser.h -pSmilesParser -d -o /<>/build/source/STRUCTURE/smilesParserParser.C source/STRUCTURE/smilesParserParser.y [ 0%] [FLEX][CIFParserLexer] Building scanner with flex 2.6.4 cd /<> && /usr/bin/flex -PCIFParser -o/<>/build/source/FORMAT/CIFParserLexer.C source/FORMAT/CIFParserLexer.l [ 0%] [BISON][CIFParserParser] Building parser with bison 3.8.2 cd /<> && /usr/bin/bison --defines=/<>/build/source/FORMAT/CIFParserParser.h -pCIFParser -d -o /<>/build/source/FORMAT/CIFParserParser.C source/FORMAT/CIFParserParser.y source/FORMAT/CIFParserParser.y: warning: 5 shift/reduce conflicts [-Wconflicts-sr] source/FORMAT/CIFParserParser.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 0%] [FLEX][GAMESSDatParserLexer] Building scanner with flex 2.6.4 cd /<> && /usr/bin/flex -PGAMESSDatParser -o/<>/build/source/FORMAT/GAMESSDatParserLexer.C source/FORMAT/GAMESSDatParserLexer.l [ 0%] [BISON][GAMESSDatParserParser] Building parser with bison 3.8.2 cd /<> && /usr/bin/bison --defines=/<>/build/source/FORMAT/GAMESSDatParserParser.h -pGAMESSDatParser -d -o /<>/build/source/FORMAT/GAMESSDatParserParser.C source/FORMAT/GAMESSDatParserParser.y source/FORMAT/GAMESSDatParserParser.y: warning: 3 shift/reduce conflicts [-Wconflicts-sr] source/FORMAT/GAMESSDatParserParser.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 0%] [FLEX][expressionParserLexer] Building scanner with flex 2.6.4 cd /<> && /usr/bin/flex -PExpressionParser -o/<>/build/source/KERNEL/expressionParserLexer.C source/KERNEL/expressionParserLexer.l [ 0%] [BISON][expressionParserParser] Building parser with bison 3.8.2 cd /<> && /usr/bin/bison --defines=/<>/build/source/KERNEL/expressionParserParser.h -pExpressionParser -d -o /<>/build/source/KERNEL/expressionParserParser.C source/KERNEL/expressionParserParser.y [ 0%] [FLEX][parsedFunctionLexer] Building scanner with flex 2.6.4 cd /<> && /usr/bin/flex -PParsedFunction -o/<>/build/source/MATHS/parsedFunctionLexer.C source/MATHS/parsedFunctionLexer.l [ 0%] [BISON][parsedFunctionParser] Building parser with bison 3.8.2 cd /<> && /usr/bin/bison --defines=/<>/build/source/MATHS/parsedFunctionParser.h -pParsedFunction -d -o /<>/build/source/MATHS/parsedFunctionParser.C source/MATHS/parsedFunctionParser.y [ 0%] [FLEX][GAFFCESParserLexer] Building scanner with flex 2.6.4 cd /<> && /usr/bin/flex -PGAFFCESParser -o/<>/build/source/MOLMEC/AMBER/GAFFCESParserLexer.C source/MOLMEC/AMBER/GAFFCESParserLexer.l [ 4%] [BISON][GAFFCESParserParser] Building parser with bison 3.8.2 cd /<> && /usr/bin/bison --defines=/<>/build/source/MOLMEC/AMBER/GAFFCESParserParser.h -pGAFFCESParser -d -o /<>/build/source/MOLMEC/AMBER/GAFFCESParserParser.C source/MOLMEC/AMBER/GAFFCESParserParser.y [ 4%] [FLEX][smartsParserLexer] Building scanner with flex 2.6.4 cd /<> && /usr/bin/flex -PSmartsParser -o/<>/build/source/STRUCTURE/smartsParserLexer.C source/STRUCTURE/smartsParserLexer.l [ 4%] [BISON][smartsParserParser] Building parser with bison 3.8.2 cd /<> && /usr/bin/bison --defines=/<>/build/source/STRUCTURE/smartsParserParser.h -pSmartsParser -d -o /<>/build/source/STRUCTURE/smartsParserParser.C source/STRUCTURE/smartsParserParser.y source/STRUCTURE/smartsParserParser.y: warning: 26 shift/reduce conflicts [-Wconflicts-sr] source/STRUCTURE/smartsParserParser.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples [ 4%] [FLEX][smilesParserLexer] Building scanner with flex 2.6.4 cd /<> && /usr/bin/flex -PSmilesParser -o/<>/build/source/STRUCTURE/smilesParserLexer.C source/STRUCTURE/smilesParserLexer.l [ 4%] Automatic MOC for target BALL /usr/bin/cmake -E cmake_autogen /<>/build/CMakeFiles/BALL_autogen.dir/AutogenInfo.json Release make[5]: Leaving directory '/<>/build' [ 4%] Built target BALL_autogen make -f CMakeFiles/BALL.dir/build.make CMakeFiles/BALL.dir/depend make[5]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build /<>/build /<>/build/CMakeFiles/BALL.dir/DependInfo.cmake --color= make[5]: Leaving directory '/<>/build' make -f CMakeFiles/BALL.dir/build.make CMakeFiles/BALL.dir/build make[5]: Entering directory '/<>/build' [ 4%] Building CXX object CMakeFiles/BALL.dir/BALL_autogen/mocs_compilation.cpp.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/BALL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BALL.dir/BALL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BALL.dir/BALL_autogen/mocs_compilation.cpp.o -c /<>/build/BALL_autogen/mocs_compilation.cpp [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/autoDeletable.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/autoDeletable.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/autoDeletable.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/autoDeletable.C.o -c /<>/source/CONCEPT/autoDeletable.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/client.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/client.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/client.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/client.C.o -c /<>/source/CONCEPT/client.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/composite.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/composite.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/composite.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/composite.C.o -c /<>/source/CONCEPT/composite.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/embeddable.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/embeddable.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/embeddable.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/embeddable.C.o -c /<>/source/CONCEPT/embeddable.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/enumerator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/enumerator.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/enumerator.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/enumerator.C.o -c /<>/source/CONCEPT/enumerator.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/factory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/factory.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/factory.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/factory.C.o -c /<>/source/CONCEPT/factory.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/object.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/object.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/object.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/object.C.o -c /<>/source/CONCEPT/object.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/objectCreator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/objectCreator.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/objectCreator.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/objectCreator.C.o -c /<>/source/CONCEPT/objectCreator.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/moleculeObjectCreator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/moleculeObjectCreator.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/moleculeObjectCreator.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/moleculeObjectCreator.C.o -c /<>/source/CONCEPT/moleculeObjectCreator.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/CONCEPT/moleculeObjectCreator.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/CONCEPT/objectCreator.h:9, from /<>/include/BALL/CONCEPT/moleculeObjectCreator.h:9, from /<>/source/CONCEPT/moleculeObjectCreator.C:6: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/CONCEPT/moleculeObjectCreator.C:10: /<>/source/CONCEPT/moleculeObjectCreator.C: In member function ‘virtual BALL::Composite* BALL::MoleculeObjectCreator::convertObject(BALL::PersistentObject&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/CONCEPT/moleculeObjectCreator.C:89:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 89 | BALL_FOREACH_BOND(*p, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/CONCEPT/moleculeObjectCreator.C: In member function ‘virtual BALL::Composite* BALL::MoleculeObjectCreator::convertObject(BALL::PersistentObject&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/CONCEPT/moleculeObjectCreator.C:89:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 89 | BALL_FOREACH_BOND(*p, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/CONCEPT/moleculeObjectCreator.C:89:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 89 | BALL_FOREACH_BOND(*p, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/source/CONCEPT/moleculeObjectCreator.C:8: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/CONCEPT/moleculeObjectCreator.C: In member function ‘virtual BALL::Composite* BALL::MoleculeObjectCreator::convertObject(BALL::PersistentObject&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/CONCEPT/moleculeObjectCreator.C:89:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 89 | BALL_FOREACH_BOND(*p, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/CONCEPT/moleculeObjectCreator.C:108:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 108 | BALL_FOREACH_BOND(*s, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/CONCEPT/moleculeObjectCreator.C:108:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 108 | BALL_FOREACH_BOND(*s, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/persistenceManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/persistenceManager.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/persistenceManager.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/persistenceManager.C.o -c /<>/source/CONCEPT/persistenceManager.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/CONCEPT/persistenceManager.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/source/CONCEPT/persistenceManager.C:7: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/preferencesObject.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/preferencesObject.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/preferencesObject.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/preferencesObject.C.o -c /<>/source/CONCEPT/preferencesObject.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/processor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/processor.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/processor.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/processor.C.o -c /<>/source/CONCEPT/processor.C [ 4%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/property.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/property.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/property.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/property.C.o -c /<>/source/CONCEPT/property.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/selectable.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/selectable.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/selectable.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/selectable.C.o -c /<>/source/CONCEPT/selectable.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/textPersistenceManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/textPersistenceManager.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/textPersistenceManager.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/textPersistenceManager.C.o -c /<>/source/CONCEPT/textPersistenceManager.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/timeStamp.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/timeStamp.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/timeStamp.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/timeStamp.C.o -c /<>/source/CONCEPT/timeStamp.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/visitor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/visitor.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/visitor.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/visitor.C.o -c /<>/source/CONCEPT/visitor.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/CONCEPT/molecularInformation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/CONCEPT/molecularInformation.C.o -MF CMakeFiles/BALL.dir/source/CONCEPT/molecularInformation.C.o.d -o CMakeFiles/BALL.dir/source/CONCEPT/molecularInformation.C.o -c /<>/source/CONCEPT/molecularInformation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/CONCEPT/molecularInformation.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/CONCEPT/molecularInformation.h:9, from /<>/source/CONCEPT/molecularInformation.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/constants.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/COMMON/constants.C.o -MF CMakeFiles/BALL.dir/source/COMMON/constants.C.o.d -o CMakeFiles/BALL.dir/source/COMMON/constants.C.o -c /<>/source/COMMON/constants.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/exception.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/COMMON/exception.C.o -MF CMakeFiles/BALL.dir/source/COMMON/exception.C.o.d -o CMakeFiles/BALL.dir/source/COMMON/exception.C.o -c /<>/source/COMMON/exception.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/hash.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/COMMON/hash.C.o -MF CMakeFiles/BALL.dir/source/COMMON/hash.C.o.d -o CMakeFiles/BALL.dir/source/COMMON/hash.C.o -c /<>/source/COMMON/hash.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/init.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/COMMON/init.C.o -MF CMakeFiles/BALL.dir/source/COMMON/init.C.o.d -o CMakeFiles/BALL.dir/source/COMMON/init.C.o -c /<>/source/COMMON/init.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/logStream.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/COMMON/logStream.C.o -MF CMakeFiles/BALL.dir/source/COMMON/logStream.C.o.d -o CMakeFiles/BALL.dir/source/COMMON/logStream.C.o -c /<>/source/COMMON/logStream.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/rtti.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/COMMON/rtti.C.o -MF CMakeFiles/BALL.dir/source/COMMON/rtti.C.o.d -o CMakeFiles/BALL.dir/source/COMMON/rtti.C.o -c /<>/source/COMMON/rtti.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/COMMON/version.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/COMMON/version.C.o -MF CMakeFiles/BALL.dir/source/COMMON/version.C.o.d -o CMakeFiles/BALL.dir/source/COMMON/version.C.o -c /<>/source/COMMON/version.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/graphAlgorithms.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/graphAlgorithms.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/graphAlgorithms.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/graphAlgorithms.C.o -c /<>/source/DATATYPE/GRAPH/graphAlgorithms.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/molecularGraph.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/molecularGraph.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/molecularGraph.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/molecularGraph.C.o -c /<>/source/DATATYPE/GRAPH/molecularGraph.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/DATATYPE/GRAPH/molecularGraph.C:4: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/DATATYPE/GRAPH/molecularGraph.C:3: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/treeWidth.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/treeWidth.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/treeWidth.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/GRAPH/treeWidth.C.o -c /<>/source/DATATYPE/GRAPH/treeWidth.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/bitVector.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/bitVector.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/bitVector.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/bitVector.C.o -c /<>/source/DATATYPE/bitVector.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/contourSurface.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/contourSurface.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/contourSurface.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/contourSurface.C.o -c /<>/source/DATATYPE/contourSurface.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/hashGrid.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/hashGrid.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/hashGrid.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/hashGrid.C.o -c /<>/source/DATATYPE/hashGrid.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/options.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/options.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/options.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/options.C.o -c /<>/source/DATATYPE/options.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularExpression.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/regularExpression.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/regularExpression.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/regularExpression.C.o -c /<>/source/DATATYPE/regularExpression.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData1D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/regularData1D.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/regularData1D.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/regularData1D.C.o -c /<>/source/DATATYPE/regularData1D.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData2D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/regularData2D.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/regularData2D.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/regularData2D.C.o -c /<>/source/DATATYPE/regularData2D.C [ 9%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/regularData3D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/regularData3D.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/regularData3D.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/regularData3D.C.o -c /<>/source/DATATYPE/regularData3D.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/DATATYPE/string.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DATATYPE/string.C.o -MF CMakeFiles/BALL.dir/source/DATATYPE/string.C.o.d -o CMakeFiles/BALL.dir/source/DATATYPE/string.C.o -c /<>/source/DATATYPE/string.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/atomicContactEnergy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/ENERGY/atomicContactEnergy.C.o -MF CMakeFiles/BALL.dir/source/ENERGY/atomicContactEnergy.C.o.d -o CMakeFiles/BALL.dir/source/ENERGY/atomicContactEnergy.C.o -c /<>/source/ENERGY/atomicContactEnergy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/STRUCTURE/geometricProperties.h:25, from /<>/source/ENERGY/atomicContactEnergy.C:16: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/hashGrid.h:25, from /<>/source/ENERGY/atomicContactEnergy.C:12: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/forwardIterator.h:9, from /<>/include/BALL/DATATYPE/hashSet.h:17, from /<>/include/BALL/SYSTEM/file.h:16, from /<>/source/ENERGY/atomicContactEnergy.C:10: /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:237:76: required from ‘BALL::ForwardIterator& BALL::ForwardIterator::operator=(const BALL::ForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/source/ENERGY/atomicContactEnergy.C:250:37: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = BALL::ACEFastAtomType*]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::ACEFastAtomType*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::ACEFastAtomType*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::ACEFastAtomType*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::ACEFastAtomType*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::ACEFastAtomType*; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/ENERGY/atomicContactEnergy.C:250:36: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/composedEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/ENERGY/composedEnergyProcessor.C.o -MF CMakeFiles/BALL.dir/source/ENERGY/composedEnergyProcessor.C.o.d -o CMakeFiles/BALL.dir/source/ENERGY/composedEnergyProcessor.C.o -c /<>/source/ENERGY/composedEnergyProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/ENERGY/energyProcessor.h:15, from /<>/include/BALL/ENERGY/composedEnergyProcessor.h:15, from /<>/source/ENERGY/composedEnergyProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/coulomb.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/ENERGY/coulomb.C.o -MF CMakeFiles/BALL.dir/source/ENERGY/coulomb.C.o.d -o CMakeFiles/BALL.dir/source/ENERGY/coulomb.C.o -c /<>/source/ENERGY/coulomb.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/source/ENERGY/coulomb.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/ENERGY/coulomb.C:7: /<>/source/ENERGY/coulomb.C: In function ‘double BALL::calculateCoulomb(const AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:90:55: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 90 | for (first_atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/ENERGY/coulomb.C:23:17: note: in expansion of macro ‘BALL_FOREACH_ATOM_PAIR’ 23 | BALL_FOREACH_ATOM_PAIR(atoms, atom_it1, atom_it2) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:92:58: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 92 | for (second_atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/ENERGY/coulomb.C:23:17: note: in expansion of macro ‘BALL_FOREACH_ATOM_PAIR’ 23 | BALL_FOREACH_ATOM_PAIR(atoms, atom_it1, atom_it2) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/distanceCoulomb.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/ENERGY/distanceCoulomb.C.o -MF CMakeFiles/BALL.dir/source/ENERGY/distanceCoulomb.C.o.d -o CMakeFiles/BALL.dir/source/ENERGY/distanceCoulomb.C.o -c /<>/source/ENERGY/distanceCoulomb.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/ENERGY/distanceCoulomb.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/ENERGY/distanceCoulomb.C:8: /<>/source/ENERGY/distanceCoulomb.C: In function ‘double BALL::calculateDistanceCoulomb(const AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:90:55: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 90 | for (first_atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/ENERGY/distanceCoulomb.C:30:17: note: in expansion of macro ‘BALL_FOREACH_ATOM_PAIR’ 30 | BALL_FOREACH_ATOM_PAIR(atoms, atom_iterator1, atom_iterator2) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:92:58: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 92 | for (second_atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/ENERGY/distanceCoulomb.C:30:17: note: in expansion of macro ‘BALL_FOREACH_ATOM_PAIR’ 30 | BALL_FOREACH_ATOM_PAIR(atoms, atom_iterator1, atom_iterator2) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/ENERGY/energyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/ENERGY/energyProcessor.C.o -MF CMakeFiles/BALL.dir/source/ENERGY/energyProcessor.C.o.d -o CMakeFiles/BALL.dir/source/ENERGY/energyProcessor.C.o -c /<>/source/ENERGY/energyProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/ENERGY/energyProcessor.h:15, from /<>/source/ENERGY/energyProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/amiraMeshFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/amiraMeshFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/amiraMeshFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/amiraMeshFile.C.o -c /<>/source/FORMAT/amiraMeshFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/antechamberFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/antechamberFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/antechamberFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/antechamberFile.C.o -c /<>/source/FORMAT/antechamberFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/source/FORMAT/antechamberFile.C:3: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/FORMAT/antechamberFile.C:8: /<>/source/FORMAT/antechamberFile.C: In member function ‘virtual bool BALL::AntechamberFile::write(const BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/antechamberFile.C:133:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 133 | BALL_FOREACH_BOND(ac, at_it, bit) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/antechamberFile.C:133:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 133 | BALL_FOREACH_BOND(ac, at_it, bit) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/antechamberFile.C: In member function ‘virtual bool BALL::AntechamberFile::write(const BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/antechamberFile.C:133:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 133 | BALL_FOREACH_BOND(ac, at_it, bit) | ^~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker1DFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/bruker1DFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/bruker1DFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/bruker1DFile.C.o -c /<>/source/FORMAT/bruker1DFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/bruker2DFile.C.o -c /<>/source/FORMAT/bruker2DFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/commandlineParser.C.o -c /<>/source/FORMAT/commandlineParser.C In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/DATATYPE/options.h:11, from /<>/include/BALL/FORMAT/commandlineParser.h:4, from /<>/source/FORMAT/commandlineParser.C:5: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::CommandlineParser::registerAdvancedParameters(BALL::Options&)’ at /<>/source/FORMAT/commandlineParser.C:406:30: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/dockResultFile.C.o -c /<>/source/FORMAT/dockResultFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/include/BALL/FORMAT/PDBFile.h:25, from /<>/include/BALL/FORMAT/dockResultFile.h:9, from /<>/source/FORMAT/dockResultFile.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/FORMAT/PDBFile.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/flexibleMolecule.h:10, from /<>/include/BALL/DOCKING/COMMON/receptor.h:14, from /<>/include/BALL/DOCKING/COMMON/result.h:9, from /<>/include/BALL/FORMAT/dockResultFile.h:11: /<>/source/FORMAT/dockResultFile.C: In member function ‘void BALL::DockResultFile::writeProtein(BALL::Protein*, QXmlStreamWriter&)’: /<>/include/BALL/KERNEL/forEach.h:187:58: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 187 | for (residue_iterator = (residue_container).beginResidue(); \ | ^ /<>/source/FORMAT/dockResultFile.C:806:25: note: in expansion of macro ‘BALL_FOREACH_RESIDUE’ 806 | BALL_FOREACH_RESIDUE(*prot,ri) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C: In member function ‘void BALL::DockResultFile::writeProtein(BALL::Protein*, QXmlStreamWriter&)’: /<>/include/BALL/KERNEL/forEach.h:187:58: note: synthesized method ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ first required here 187 | for (residue_iterator = (residue_container).beginResidue(); \ | ^ /<>/source/FORMAT/dockResultFile.C:806:25: note: in expansion of macro ‘BALL_FOREACH_RESIDUE’ 806 | BALL_FOREACH_RESIDUE(*prot,ri) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C: In member function ‘void BALL::DockResultFile::writeResidue(BALL::Residue*, QXmlStreamWriter&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/dockResultFile.C:820:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 820 | BALL_FOREACH_ATOM(*res, pai) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C: In member function ‘void BALL::DockResultFile::writeResidue(BALL::Residue*, QXmlStreamWriter&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/dockResultFile.C:820:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 820 | BALL_FOREACH_ATOM(*res, pai) | ^~~~~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C: In member function ‘void BALL::DockResultFile::writeMolecule(BALL::Molecule*, QXmlStreamWriter&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/dockResultFile.C:982:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 982 | BALL_FOREACH_ATOM(*molecule, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C:990:52: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 990 | a_it = molecule->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/dockResultFile.C:991:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 991 | BALL_FOREACH_ATOM(*molecule, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/dockResultFile.C:1001:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 1001 | BALL_FOREACH_BOND(*molecule, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/dockResultFile.C:1001:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 1001 | BALL_FOREACH_BOND(*molecule, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/FORMAT/PDBdefs.h:13: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C: In member function ‘void BALL::DockResultFile::writeMolecule(BALL::Molecule*, QXmlStreamWriter&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/dockResultFile.C:1001:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 1001 | BALL_FOREACH_BOND(*molecule, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/source/FORMAT/dockResultFile.C:1007:52: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 1007 | a_it = molecule->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/dockResultFile.C:1008:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 1008 | BALL_FOREACH_ATOM(*molecule, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CCP4File.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/CCP4File.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/CCP4File.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/CCP4File.C.o -c /<>/source/FORMAT/CCP4File.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/CIFFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/CIFFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/CIFFile.C.o -c /<>/source/FORMAT/CIFFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:17, from /<>/source/FORMAT/CIFFile.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/FORMAT/CIFFile.h: In member function ‘BALL::CIFFile::SaveFrame& BALL::CIFFile::SaveFrame::operator=(const BALL::CIFFile::SaveFrame&)’: /<>/include/BALL/FORMAT/CIFFile.h:76:31: warning: implicitly-declared ‘BALL::CIFFile::Item& BALL::CIFFile::Item::operator=(const BALL::CIFFile::Item&)’ is deprecated [-Wdeprecated-copy] 76 | class SaveFrame | ^~~~~~~~~ /<>/source/FORMAT/CIFFile.C:134:9: note: because ‘BALL::CIFFile::Item’ has user-provided ‘BALL::CIFFile::Item::Item(const BALL::CIFFile::Item&)’ 134 | CIFFile::Item::Item(const Item& item) | ^~~~~~~ /<>/source/FORMAT/CIFFile.C: In constructor ‘BALL::CIFFile::Datacontent::Datacontent(BALL::CIFFile::SaveFrame)’: /<>/source/FORMAT/CIFFile.C:379:29: note: synthesized method ‘BALL::CIFFile::SaveFrame& BALL::CIFFile::SaveFrame::operator=(const BALL::CIFFile::SaveFrame&)’ first required here 379 | saveframe = new_saveframe; | ^~~~~~~~~~~~~ /<>/source/FORMAT/CIFFile.C: In constructor ‘BALL::CIFFile::Datacontent::Datacontent(BALL::CIFFile::Item)’: /<>/source/FORMAT/CIFFile.C:385:28: warning: implicitly-declared ‘BALL::CIFFile::Item& BALL::CIFFile::Item::operator=(const BALL::CIFFile::Item&)’ is deprecated [-Wdeprecated-copy] 385 | dataitem = new_item; | ^~~~~~~~ /<>/source/FORMAT/CIFFile.C:134:9: note: because ‘BALL::CIFFile::Item’ has user-provided ‘BALL::CIFFile::Item::Item(const BALL::CIFFile::Item&)’ 134 | CIFFile::Item::Item(const Item& item) | ^~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DCDFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/DCDFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/DCDFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/DCDFile.C.o -c /<>/source/FORMAT/DCDFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/DSN6File.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/DSN6File.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/DSN6File.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/DSN6File.C.o -c /<>/source/FORMAT/DSN6File.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatFile.C.o -c /<>/source/FORMAT/GAMESSDatFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/FORMAT/GAMESSDatFile.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/GAMESSDatFile.C: In member function ‘virtual bool BALL::GAMESSDatFile::write(const BALL::System&)’: /<>/source/FORMAT/GAMESSDatFile.C:88:46: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 88 | for (atIt = system.beginAtom(); +atIt; ++atIt) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/genericMolFile.C.o -c /<>/source/FORMAT/genericMolFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/FORMAT/genericMolFile.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HINFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/HINFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/HINFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/HINFile.C.o -c /<>/source/FORMAT/HINFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/source/FORMAT/HINFile.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/simpleBox3.h:15, from /<>/include/BALL/FORMAT/HINFile.h:13, from /<>/source/FORMAT/HINFile.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/HINFile.C: In member function ‘virtual bool BALL::HINFile::write(const BALL::System&)’: /<>/source/FORMAT/HINFile.C:153:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 153 | for (atom_it = system.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/HINFile.C:377:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 377 | for (atom_it = system.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/HMOFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/HMOFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/HMOFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/HMOFile.C.o -c /<>/source/FORMAT/HMOFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/FORMAT/HMOFile.h:11, from /<>/source/FORMAT/HMOFile.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/INIFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/INIFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/INIFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/INIFile.C.o -c /<>/source/FORMAT/INIFile.C [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/JCAMPFile.C.o -c /<>/source/FORMAT/JCAMPFile.C In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:10, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/lineBasedFile.h:9, from /<>/include/BALL/FORMAT/JCAMPFile.h:9, from /<>/source/FORMAT/JCAMPFile.C:6: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::JCAMPFile::read()’ at /<>/source/FORMAT/JCAMPFile.C:93:39: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::JCAMPFile::read()’ at /<>/source/FORMAT/JCAMPFile.C:115:39: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::JCAMPFile::read()’ at /<>/source/FORMAT/JCAMPFile.C:143:37: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/KCFFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/KCFFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/KCFFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/KCFFile.C.o -c /<>/source/FORMAT/KCFFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/FORMAT/KCFFile.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/FORMAT/KCFFile.h:13, from /<>/source/FORMAT/KCFFile.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/KCFFile.C: In member function ‘virtual bool BALL::KCFFile::write(const BALL::Molecule&)’: /<>/source/FORMAT/KCFFile.C:91:46: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 91 | for (ai = molecule.beginAtom(); +ai; ++ai) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/lineBasedFile.C.o -c /<>/source/FORMAT/lineBasedFile.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOLFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/MOLFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/MOLFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/MOLFile.C.o -c /<>/source/FORMAT/MOLFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/FORMAT/MOLFile.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/FORMAT/MOLFile.h:13, from /<>/source/FORMAT/MOLFile.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/FORMAT/MOLFile.C:11: /<>/source/FORMAT/MOLFile.C: In member function ‘virtual bool BALL::MOLFile::write(const BALL::Molecule&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/MOLFile.C:164:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 164 | BALL_FOREACH_BOND(molecule, it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/MOLFile.C:164:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 164 | BALL_FOREACH_BOND(molecule, it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/source/FORMAT/MOLFile.C:6: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/MOLFile.C: In member function ‘virtual bool BALL::MOLFile::write(const BALL::Molecule&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/MOLFile.C:164:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 164 | BALL_FOREACH_BOND(molecule, it, bond_it) | ^~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/molFileFactory.C.o -c /<>/source/FORMAT/molFileFactory.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/include/BALL/FORMAT/PDBFile.h:25, from /<>/source/FORMAT/molFileFactory.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/FORMAT/PDBFile.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOPACInputFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/MOPACInputFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/MOPACInputFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/MOPACInputFile.C.o -c /<>/source/FORMAT/MOPACInputFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/FORMAT/MOPACInputFile.h:17, from /<>/source/FORMAT/MOPACInputFile.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOPACOutputFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/MOPACOutputFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/MOPACOutputFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/MOPACOutputFile.C.o -c /<>/source/FORMAT/MOPACOutputFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/FORMAT/MOPACOutputFile.h:17, from /<>/source/FORMAT/MOPACOutputFile.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/SDFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/SDFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/SDFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/SDFile.C.o -c /<>/source/FORMAT/SDFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/FORMAT/SDFile.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/FORMAT/MOLFile.h:13, from /<>/include/BALL/FORMAT/SDFile.h:9, from /<>/source/FORMAT/SDFile.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/MOL2File.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/MOL2File.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/MOL2File.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/MOL2File.C.o -c /<>/source/FORMAT/MOL2File.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/FORMAT/MOL2File.h:17, from /<>/source/FORMAT/MOL2File.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/FORMAT/MOL2File.h:13: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/FORMAT/MOL2File.C:15: /<>/source/FORMAT/MOL2File.C: In member function ‘virtual bool BALL::MOL2File::write(const BALL::Molecule&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/MOL2File.C:127:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 127 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/MOL2File.C:127:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 127 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/MOL2File.C: In member function ‘virtual bool BALL::MOL2File::write(const BALL::Molecule&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/MOL2File.C:127:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 127 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/source/FORMAT/MOL2File.C:162:50: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 162 | atom_it = new_molecule.beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/FORMAT/MOL2File.C:212:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 212 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/FORMAT/MOL2File.C:212:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 212 | BALL_FOREACH_BOND(new_molecule, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/MOL2File.C: In member function ‘bool BALL::MOL2File::containsAtomChilds_(BALL::AtomContainerConstIterator&)’: /<>/source/FORMAT/MOL2File.C:993:65: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 993 | for (children_it = frag_it->beginChildComposite(); +children_it; ++children_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::ChildCompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/NMRStarFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/NMRStarFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/NMRStarFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/NMRStarFile.C.o -c /<>/source/FORMAT/NMRStarFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:17, from /<>/include/BALL/FORMAT/NMRStarFile.h:9, from /<>/source/FORMAT/NMRStarFile.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/NMRStarFile.C: In member function ‘bool BALL::NMRStarFile::assignShifts_(BALLToBMRBMapper&)’: /<>/source/FORMAT/NMRStarFile.C:1204:98: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 1204 | r_it = const_cast(ball_to_bmrb_mapping.getChain())->beginResidue(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/NMRStarFile.C: In member function ‘bool BALL::NMRStarFile::assignShifts_(BALLToBMRBMapper&)’: /<>/source/FORMAT/NMRStarFile.C:1204:98: note: synthesized method ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ first required here 1204 | r_it = const_cast(ball_to_bmrb_mapping.getChain())->beginResidue(); | ^ /<>/source/FORMAT/NMRStarFile.C: In member function ‘int BALL::NMRStarFile::valueToInt_(BALL::String)’: /<>/source/FORMAT/NMRStarFile.C:2277:45: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 2277 | } catch (Exception::InvalidFormat) { | ^~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/paramFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/paramFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/paramFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/paramFile.C.o -c /<>/source/FORMAT/paramFile.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/parameters.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/parameters.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/parameters.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/parameters.C.o -c /<>/source/FORMAT/parameters.C /<>/source/FORMAT/parameters.C: In copy constructor ‘BALL::Parameters::Parameters(const BALL::Parameters&)’: /<>/source/FORMAT/parameters.C:19:25: warning: implicitly-declared ‘BALL::INIFile::INIFile(const BALL::INIFile&)’ is deprecated [-Wdeprecated-copy] 19 | INI_file_(parameters.INI_file_) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/FORMAT/parameters.h:12, from /<>/source/FORMAT/parameters.C:7: /<>/include/BALL/FORMAT/INIFile.h:378:32: note: because ‘BALL::INIFile’ has user-provided ‘const BALL::INIFile& BALL::INIFile::operator=(const BALL::INIFile&)’ 378 | const INIFile& operator = (const INIFile& file) | ^~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/parameterSection.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/parameterSection.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/parameterSection.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/parameterSection.C.o -c /<>/source/FORMAT/parameterSection.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBdefs.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/PDBdefs.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/PDBdefs.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/PDBdefs.C.o -c /<>/source/FORMAT/PDBdefs.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/source/FORMAT/PDBdefs.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:13: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileGeneral.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/PDBFileGeneral.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/PDBFileGeneral.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/PDBFileGeneral.C.o -c /<>/source/FORMAT/PDBFileGeneral.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/include/BALL/FORMAT/PDBFile.h:25, from /<>/source/FORMAT/PDBFileGeneral.C:10: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/FORMAT/PDBFile.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/PDBFileGeneral.C: In member function ‘bool BALL::PDBFile::parseLine(const char*, BALL::Size, const char*, ...)’: /<>/source/FORMAT/PDBFileGeneral.C:381:24: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 381 | strncpy(formats, "%.6s", 4); | ^ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/PDBFileDetails.C.o -c /<>/source/FORMAT/PDBFileDetails.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/include/BALL/FORMAT/PDBFile.h:25, from /<>/source/FORMAT/PDBFileDetails.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/FORMAT/PDBFile.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/PDBFileDetails.C: In member function ‘void BALL::PDBFile::postprocessSheetsTurns_(QuadrupleList&, SecStructList&)’: /<>/source/FORMAT/PDBFileDetails.C:195:86: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 195 | for (protein_res_it = current_protein_->beginResidue(); !protein_res_it.isEnd(); ++protein_res_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/PDBFileDetails.C: In member function ‘void BALL::PDBFile::postprocessSheetsTurns_(QuadrupleList&, SecStructList&)’: /<>/source/FORMAT/PDBFileDetails.C:195:86: note: synthesized method ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ first required here 195 | for (protein_res_it = current_protein_->beginResidue(); !protein_res_it.isEnd(); ++protein_res_it) | ^ /<>/source/FORMAT/PDBFileDetails.C: In member function ‘void BALL::PDBFile::postprocessRandomCoils_()’: /<>/source/FORMAT/PDBFileDetails.C:287:70: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 287 | for (protein_res_it = chain_it->beginResidue(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/PDBFileDetails.C: In static member function ‘static void BALL::PDBFile::updateAdditionalAtomInfo_(const BALL::PDB::Structure::AtomEntry&, BALL::PDB::AdditionalAtomInfo&)’: /<>/source/FORMAT/PDBFileDetails.C:1460:40: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 1460 | strncpy(aai.residue_name, atom.residue->getName().c_str(), 4); | ^ /<>/source/FORMAT/PDBFileDetails.C: In member function ‘void BALL::PDBFile::writeCoordinateSection_(const BALL::PDB::Structure&, const BALL::PDBInfo&)’: /<>/source/FORMAT/PDBFileDetails.C:1553:40: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 4 equals destination size [-Wstringop-truncation] 1553 | strncpy(atom_info.residue_name, atom_info.current_residue->getName().c_str(), 4); | ^ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/property.h:11: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BALL::PDB::Structure::NCSMatrix}; _Tp = BALL::PDB::Structure::NCSMatrix; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /<>/source/FORMAT/PDBFileDetails.C: In member function ‘void BALL::PDBFile::writeSEQRESSection_(const std::vector >&)’: /<>/source/FORMAT/PDBFileDetails.C:1785:32: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 3 bytes from a string of length 3 [-Wstringop-truncation] 1785 | strncpy(sr.residue_name[res_counter++], seq, 3); | ^ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BALL::PDB::Structure::NCSMatrix}; _Tp = BALL::PDB::Structure::NCSMatrix; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BALL::PDB::Structure::NCSMatrix; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘static void BALL::PDBFile::extractStructure_(const BALL::AtomContainer&, BALL::PDB::Structure&)’ at /<>/source/FORMAT/PDBFileDetails.C:1309:40: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBInfo.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/PDBInfo.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/PDBInfo.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/PDBInfo.C.o -c /<>/source/FORMAT/PDBInfo.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/include/BALL/FORMAT/PDBInfo.h:16, from /<>/source/FORMAT/PDBInfo.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/FORMAT/PDBRecords.h:16, from /<>/include/BALL/FORMAT/PDBInfo.h:12: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/PDBRecords.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/PDBRecords.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/PDBRecords.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/PDBRecords.C.o -c /<>/source/FORMAT/PDBRecords.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/pubchemDownloader.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/pubchemDownloader.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/pubchemDownloader.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/pubchemDownloader.C.o -c /<>/source/FORMAT/pubchemDownloader.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/resourceFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/resourceFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/resourceFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/resourceFile.C.o -c /<>/source/FORMAT/resourceFile.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/SCWRLRotamerFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/SCWRLRotamerFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/SCWRLRotamerFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/SCWRLRotamerFile.C.o -c /<>/source/FORMAT/SCWRLRotamerFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/STRUCTURE/fragmentDB.h:13, from /<>/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /<>/source/FORMAT/SCWRLRotamerFile.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/trajectoryFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/trajectoryFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/trajectoryFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/trajectoryFile.C.o -c /<>/source/FORMAT/trajectoryFile.C [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/trajectoryFileFactory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/trajectoryFileFactory.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/trajectoryFileFactory.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/trajectoryFileFactory.C.o -c /<>/source/FORMAT/trajectoryFileFactory.C /<>/source/FORMAT/trajectoryFileFactory.C: In static member function ‘static BALL::TrajectoryFile* BALL::TrajectoryFileFactory::detectFormat(const BALL::String&)’: /<>/source/FORMAT/trajectoryFileFactory.C:103:75: warning: unused parameter ‘name’ [-Wunused-parameter] 103 | TrajectoryFile* TrajectoryFileFactory::detectFormat(const String& name) | ~~~~~~~~~~~~~~^~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/TRRFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/TRRFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/TRRFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/TRRFile.C.o -c /<>/source/FORMAT/TRRFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/FORMAT/TRRFile.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /<>/include/BALL/FORMAT/trajectoryFile.h:13, from /<>/include/BALL/FORMAT/TRRFile.h:9, from /<>/source/FORMAT/TRRFile.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/XYZFile.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/XYZFile.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/XYZFile.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/XYZFile.C.o -c /<>/source/FORMAT/XYZFile.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/source/FORMAT/XYZFile.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/CIFParserParser.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/CIFParserParser.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/CIFParserParser.C.o -c /<>/build/source/FORMAT/CIFParserParser.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserParser.y:2: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/build/source/FORMAT/CIFParserParser.C: In function ‘int CIFParserparse()’: /<>/build/source/FORMAT/CIFParserParser.C:1662:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1662 | yyerror (YY_("syntax error")); | ^~~~~~~~~~~~~~ /<>/build/source/FORMAT/CIFParserParser.C:309:22: note: in definition of macro ‘YY_’ 309 | # define YY_(Msgid) Msgid | ^~~~~ /<>/build/source/FORMAT/CIFParserParser.C:1773:16: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 1773 | yyerror (YY_("memory exhausted")); | ^~~~~~~~~~~~~~~~~~ /<>/build/source/FORMAT/CIFParserParser.C:309:22: note: in definition of macro ‘YY_’ 309 | # define YY_(Msgid) Msgid | ^~~~~ source/FORMAT/CIFParserParser.y:239:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In file included from /usr/include/stdio.h:906, from /usr/include/c++/12/cstdio:42, from /usr/include/c++/12/ext/string_conversions.h:43, from /usr/include/c++/12/bits/basic_string.h:3960, from /usr/include/c++/12/string:53, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:10, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:9: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:239:18: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:236:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:236:18: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:233:33: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:233:18: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:230:33: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:230:18: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:227:33: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:227:18: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:219:89: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:219:74: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:218:71: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:218:56: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:217:33: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:217:18: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:214:95: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:214:80: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:213:95: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:213:80: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:209:111: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:209:96: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:205:159: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:205:144: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:204:139: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:204:124: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:203:139: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:203:124: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 7648 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:198:139: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:198:124: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:197:139: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:197:124: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 2551 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:196:159: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 0 and 2549 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:196:144: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 5100 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:195:139: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:195:124: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 5099 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ source/FORMAT/CIFParserParser.y: In function ‘int CIFParserparse()’: source/FORMAT/CIFParserParser.y:194:139: warning: ‘%s’ directive writing up to 2549 bytes into a region of size between 1 and 2550 [-Wformat-overflow=] In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘int CIFParserparse()’ at source/FORMAT/CIFParserParser.y:194:124: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 1 and 7648 bytes into a destination of size 2550 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/CIFParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/CIFParserLexer.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/CIFParserLexer.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/CIFParserLexer.C.o -c /<>/build/source/FORMAT/CIFParserLexer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/FORMAT/CIFFile.h:17, from source/FORMAT/CIFParserLexer.l:2: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/build/source/FORMAT/CIFParserLexer.C: At global scope: /<>/build/source/FORMAT/CIFParserLexer.C:2176:17: warning: ‘void yyunput(int, char*)’ defined but not used [-Wunused-function] 2176 | static void yyunput (int c, char * yy_bp ) | ^~~~~~~ source/FORMAT/CIFParserLexer.l: In function ‘int CIFParserlex()’: source/FORMAT/CIFParserLexer.l:223:10: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:207:10: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:200:10: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:135:10: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:117:10: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] source/FORMAT/CIFParserLexer.l:90:15: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ output may be truncated copying 2550 bytes from a string of length 8191 [-Wstringop-truncation] [ 23%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserParser.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserParser.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserParser.C.o -c /<>/build/source/FORMAT/GAMESSDatParserParser.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserLexer.C.o -MF CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserLexer.C.o.d -o CMakeFiles/BALL.dir/source/FORMAT/GAMESSDatParserLexer.C.o -c /<>/build/source/FORMAT/GAMESSDatParserLexer.C /<>/build/source/FORMAT/GAMESSDatParserLexer.C:2637:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] 2637 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/atom.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/atom.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/atom.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/atom.C.o -c /<>/source/KERNEL/atom.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/KERNEL/atom.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/KERNEL/atom.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/atomContainer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/atomContainer.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/atomContainer.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/atomContainer.C.o -c /<>/source/KERNEL/atomContainer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/source/KERNEL/atomContainer.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/KERNEL/atomContainer.C:6: /<>/source/KERNEL/atomContainer.C: In member function ‘BALL::Size BALL::AtomContainer::countBonds() const’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/KERNEL/atomContainer.C:230:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 230 | BALL_FOREACH_BOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/KERNEL/atomContainer.C:230:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 230 | BALL_FOREACH_BOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/atomContainer.C: In member function ‘BALL::Size BALL::AtomContainer::countBonds() const’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/KERNEL/atomContainer.C:230:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 230 | BALL_FOREACH_BOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/source/KERNEL/atomContainer.C: In member function ‘BALL::Size BALL::AtomContainer::countInterBonds() const’: /<>/include/BALL/KERNEL/forEach.h:124:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 124 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/KERNEL/atomContainer.C:244:17: note: in expansion of macro ‘BALL_FOREACH_INTERBOND’ 244 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:126:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 126 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/KERNEL/atomContainer.C:244:17: note: in expansion of macro ‘BALL_FOREACH_INTERBOND’ 244 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/atomContainer.C: In member function ‘BALL::Size BALL::AtomContainer::countIntraBonds() const’: /<>/include/BALL/KERNEL/forEach.h:141:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 141 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/KERNEL/atomContainer.C:258:17: note: in expansion of macro ‘BALL_FOREACH_INTRABOND’ 258 | BALL_FOREACH_INTRABOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:143:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 143 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/KERNEL/atomContainer.C:258:17: note: in expansion of macro ‘BALL_FOREACH_INTRABOND’ 258 | BALL_FOREACH_INTRABOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/atomContainer.C: In member function ‘bool BALL::AtomContainer::applyInterBond(BALL::UnaryProcessor&)’: /<>/include/BALL/KERNEL/forEach.h:124:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 124 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/KERNEL/atomContainer.C:460:17: note: in expansion of macro ‘BALL_FOREACH_INTERBOND’ 460 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/atomContainer.C: In member function ‘bool BALL::AtomContainer::applyInterBond(BALL::UnaryProcessor&)’: /<>/include/BALL/KERNEL/forEach.h:124:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 124 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/KERNEL/atomContainer.C:460:17: note: in expansion of macro ‘BALL_FOREACH_INTERBOND’ 460 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:126:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 126 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/KERNEL/atomContainer.C:460:17: note: in expansion of macro ‘BALL_FOREACH_INTERBOND’ 460 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/atomContainer.C: In member function ‘bool BALL::AtomContainer::applyInterBond(BALL::UnaryProcessor&)’: /<>/include/BALL/KERNEL/forEach.h:126:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 126 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/KERNEL/atomContainer.C:460:17: note: in expansion of macro ‘BALL_FOREACH_INTERBOND’ 460 | BALL_FOREACH_INTERBOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/atomContainer.C: In member function ‘bool BALL::AtomContainer::applyIntraBond(BALL::UnaryProcessor&)’: /<>/include/BALL/KERNEL/forEach.h:141:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 141 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/KERNEL/atomContainer.C:484:17: note: in expansion of macro ‘BALL_FOREACH_INTRABOND’ 484 | BALL_FOREACH_INTRABOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:143:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 143 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/KERNEL/atomContainer.C:484:17: note: in expansion of macro ‘BALL_FOREACH_INTRABOND’ 484 | BALL_FOREACH_INTRABOND(*this, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/KERNEL/atomContainer.C:7: /<>/include/BALL/KERNEL/global.h: In instantiation of ‘void BALL::cloneBonds(const AtomContainerType&, AtomContainerType&) [with AtomContainerType = AtomContainer]’: /<>/source/KERNEL/atomContainer.C:91:20: required from here /<>/include/BALL/KERNEL/global.h:79:40: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 79 | for (bond_iter = atom_iter_a->beginBond(); bond_iter != atom_iter_a->endBond(); ++bond_iter) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/bond.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/bond.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/bond.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/bond.C.o -c /<>/source/KERNEL/bond.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/KERNEL/bond.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/KERNEL/bond.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/chain.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/chain.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/chain.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/chain.C.o -c /<>/source/KERNEL/chain.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/source/KERNEL/chain.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expression.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/expression.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/expression.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/expression.C.o -c /<>/source/KERNEL/expression.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/KERNEL/standardPredicates.h:19, from /<>/source/KERNEL/expression.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from /<>/include/BALL/KERNEL/expression.h:13, from /<>/source/KERNEL/expression.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionPredicate.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/expressionPredicate.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/expressionPredicate.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/expressionPredicate.C.o -c /<>/source/KERNEL/expressionPredicate.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionTree.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/expressionTree.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/expressionTree.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/expressionTree.C.o -c /<>/source/KERNEL/expressionTree.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/expressionParser.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/expressionParser.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/expressionParser.C.o -c /<>/source/KERNEL/expressionParser.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/extractors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/extractors.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/extractors.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/extractors.C.o -c /<>/source/KERNEL/extractors.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/source/KERNEL/extractors.C:13: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from /<>/include/BALL/KERNEL/expression.h:13, from /<>/source/KERNEL/extractors.C:12: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/fragment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/fragment.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/fragment.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/fragment.C.o -c /<>/source/KERNEL/fragment.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/source/KERNEL/fragment.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/global.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/global.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/global.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/global.C.o -c /<>/source/KERNEL/global.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/KERNEL/global.h:15, from /<>/source/KERNEL/global.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/global.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/molecularInteractions.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/molecularInteractions.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/molecularInteractions.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/molecularInteractions.C.o -c /<>/source/KERNEL/molecularInteractions.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/molecule.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/molecule.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/molecule.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/molecule.C.o -c /<>/source/KERNEL/molecule.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/source/KERNEL/molecule.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/nucleicAcid.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/nucleicAcid.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/nucleicAcid.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/nucleicAcid.C.o -c /<>/source/KERNEL/nucleicAcid.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/KERNEL/nucleicAcid.h:9, from /<>/source/KERNEL/nucleicAcid.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/nucleotide.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/nucleotide.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/nucleotide.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/nucleotide.C.o -c /<>/source/KERNEL/nucleotide.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/nucleotide.h:9, from /<>/source/KERNEL/nucleotide.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/PDBAtom.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/PDBAtom.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/PDBAtom.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/PDBAtom.C.o -c /<>/source/KERNEL/PDBAtom.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/source/KERNEL/PDBAtom.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/PDBAtom.h:9, from /<>/source/KERNEL/PDBAtom.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/predicate.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/predicate.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/predicate.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/predicate.C.o -c /<>/source/KERNEL/predicate.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/protein.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/protein.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/protein.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/protein.C.o -c /<>/source/KERNEL/protein.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/source/KERNEL/protein.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/PTE.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/PTE.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/PTE.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/PTE.C.o -c /<>/source/KERNEL/PTE.C [ 23%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/residue.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/residue.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/residue.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/residue.C.o -c /<>/source/KERNEL/residue.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/source/KERNEL/residue.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/residue.C: In member function ‘BALL::Angle BALL::Residue::getTorsionPsi() const’: /<>/source/KERNEL/residue.C:135:53: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 135 | for (it = beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/residue.C:143:59: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 143 | for (it = next->beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/residue.C: In member function ‘BALL::Angle BALL::Residue::getTorsionPhi() const’: /<>/source/KERNEL/residue.C:199:53: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 199 | for (it = beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/residue.C:207:63: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 207 | for (it = previous->beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/residue.C: In member function ‘BALL::Angle BALL::Residue::getTorsionOmega() const’: /<>/source/KERNEL/residue.C:262:53: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 262 | for (it = beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/KERNEL/residue.C:270:59: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 270 | for (it = next->beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/secondaryStructure.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/secondaryStructure.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/secondaryStructure.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/secondaryStructure.C.o -c /<>/source/KERNEL/secondaryStructure.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/source/KERNEL/secondaryStructure.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/selector.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/selector.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/selector.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/selector.C.o -c /<>/source/KERNEL/selector.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/standardPredicates.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/standardPredicates.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/standardPredicates.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/standardPredicates.C.o -c /<>/source/KERNEL/standardPredicates.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/KERNEL/standardPredicates.h:19, from /<>/source/KERNEL/standardPredicates.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/KERNEL/bond.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/system.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/system.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/system.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/system.C.o -c /<>/source/KERNEL/system.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/KERNEL/system.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/expressionParserParser.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/expressionParserParser.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/expressionParserParser.C.o -c /<>/build/source/KERNEL/expressionParserParser.C source/KERNEL/expressionParserParser.y:11:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] source/KERNEL/expressionParserParser.y:126:2: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] [ 28%] Building CXX object CMakeFiles/BALL.dir/source/KERNEL/expressionParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/KERNEL/expressionParserLexer.C.o -MF CMakeFiles/BALL.dir/source/KERNEL/expressionParserLexer.C.o.d -o CMakeFiles/BALL.dir/source/KERNEL/expressionParserLexer.C.o -c /<>/build/source/KERNEL/expressionParserLexer.C /<>/build/source/KERNEL/expressionParserLexer.C:1845:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] 1845 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/analyticalGeometry.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/analyticalGeometry.C.o -MF CMakeFiles/BALL.dir/source/MATHS/analyticalGeometry.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/analyticalGeometry.C.o -c /<>/source/MATHS/analyticalGeometry.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/angle.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/angle.C.o -MF CMakeFiles/BALL.dir/source/MATHS/angle.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/angle.C.o -c /<>/source/MATHS/angle.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/box3.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/box3.C.o -MF CMakeFiles/BALL.dir/source/MATHS/box3.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/box3.C.o -c /<>/source/MATHS/box3.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/circle3.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/circle3.C.o -MF CMakeFiles/BALL.dir/source/MATHS/circle3.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/circle3.C.o -c /<>/source/MATHS/circle3.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/cubicSpline1D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/cubicSpline1D.C.o -MF CMakeFiles/BALL.dir/source/MATHS/cubicSpline1D.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/cubicSpline1D.C.o -c /<>/source/MATHS/cubicSpline1D.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/cubicSpline2D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/cubicSpline2D.C.o -MF CMakeFiles/BALL.dir/source/MATHS/cubicSpline2D.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/cubicSpline2D.C.o -c /<>/source/MATHS/cubicSpline2D.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/function.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/function.C.o -MF CMakeFiles/BALL.dir/source/MATHS/function.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/function.C.o -c /<>/source/MATHS/function.C [ 28%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/line3.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork 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CMakeFiles/BALL.dir/source/MATHS/vector3.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/vector3.C.o -c /<>/source/MATHS/vector3.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/vector4.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/vector4.C.o -MF CMakeFiles/BALL.dir/source/MATHS/vector4.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/vector4.C.o -c /<>/source/MATHS/vector4.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunctionParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/parsedFunctionParser.C.o -MF CMakeFiles/BALL.dir/source/MATHS/parsedFunctionParser.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/parsedFunctionParser.C.o -c /<>/build/source/MATHS/parsedFunctionParser.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MATHS/parsedFunctionLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MATHS/parsedFunctionLexer.C.o -MF CMakeFiles/BALL.dir/source/MATHS/parsedFunctionLexer.C.o.d -o CMakeFiles/BALL.dir/source/MATHS/parsedFunctionLexer.C.o -c /<>/build/source/MATHS/parsedFunctionLexer.C /<>/build/source/MATHS/parsedFunctionLexer.C:1869:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] 1869 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amber.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amber.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amber.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amber.C.o -c /<>/source/MOLMEC/AMBER/amber.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/include/BALL/MOLMEC/AMBER/amber.h:14, from /<>/source/MOLMEC/AMBER/amber.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /<>/source/MOLMEC/AMBER/amber.C:11: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function ‘void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)’: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:63: warning: implicitly-declared ‘BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)’ is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:25: note: because ‘BALL::CosineTorsion::SingleValues’ has user-provided ‘BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)’ 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberBend.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberBend.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberBend.C.o -c /<>/source/MOLMEC/AMBER/amberBend.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberBend.h:14, from /<>/source/MOLMEC/AMBER/amberBend.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberBend.C: In member function ‘virtual bool BALL::AmberBend::setup()’: /<>/source/MOLMEC/AMBER/amberBend.C:84:58: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 84 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberBend.C: In member function ‘virtual bool BALL::AmberBend::setup()’: /<>/source/MOLMEC/AMBER/amberBend.C:84:58: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 84 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /<>/source/MOLMEC/AMBER/amberBend.C:87:44: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 87 | for (it1 = it2, ++it1; +it1 ; ++it1) | ^~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberNonBonded.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberNonBonded.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberNonBonded.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberNonBonded.C.o -c /<>/source/MOLMEC/AMBER/amberNonBonded.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/source/MOLMEC/AMBER/amberNonBonded.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C: In member function ‘const BALL::AmberNonBonded& BALL::AmberNonBonded::operator=(const BALL::AmberNonBonded&)’: /<>/source/MOLMEC/AMBER/amberNonBonded.C:127:49: warning: implicitly-declared ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’ is deprecated [-Wdeprecated-copy] 127 | ForceFieldComponent::operator = (anb); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:17: note: because ‘BALL::ForceFieldComponent’ has user-provided ‘BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)’ 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h: In member function ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:34:27: warning: implicitly-declared ‘BALL::ScoringComponent& BALL::ScoringComponent::operator=(const BALL::ScoringComponent&)’ is deprecated [-Wdeprecated-copy] 34 | class BALL_EXPORT ForceFieldComponent : public ScoringComponent | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/SCORING/COMMON/scoringComponent.h:26:25: note: because ‘BALL::ScoringComponent’ has user-provided ‘BALL::ScoringComponent::ScoringComponent(const BALL::ScoringComponent&)’ 26 | ScoringComponent(const ScoringComponent& sc); | ^~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberNonBonded.C: In member function ‘const BALL::AmberNonBonded& BALL::AmberNonBonded::operator=(const BALL::AmberNonBonded&)’: /<>/source/MOLMEC/AMBER/amberNonBonded.C:127:49: note: synthesized method ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’ first required here 127 | ForceFieldComponent::operator = (anb); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberStretch.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberStretch.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberStretch.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberStretch.C.o -c /<>/source/MOLMEC/AMBER/amberStretch.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/AMBER/amberStretch.h:14, from /<>/source/MOLMEC/AMBER/amberStretch.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberTorsion.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberTorsion.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/amberTorsion.C.o -c /<>/source/MOLMEC/AMBER/amberTorsion.C In file included from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:15, from /<>/source/MOLMEC/AMBER/amberTorsion.C:5: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function ‘void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)’: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:63: warning: implicitly-declared ‘BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)’ is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:25: note: because ‘BALL::CosineTorsion::SingleValues’ has user-provided ‘BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)’ 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberTorsion.h:19: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C: In member function ‘virtual bool BALL::AmberTorsion::setup()’: /<>/source/MOLMEC/AMBER/amberTorsion.C:115:58: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 115 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C: In member function ‘virtual bool BALL::AmberTorsion::setup()’: /<>/source/MOLMEC/AMBER/amberTorsion.C:115:58: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 115 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ /<>/source/MOLMEC/AMBER/amberTorsion.C:124:74: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 124 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C:139:119: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 139 | for (it3 = const_cast(it1->getSecondAtom())->beginBond(); +it3 ; ++it3) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C:186:125: warning: implicitly-declared ‘BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)’ is deprecated [-Wdeprecated-copy] 186 | tmp.values = values.values[j]; | ^ /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:25: note: because ‘BALL::CosineTorsion::SingleValues’ has user-provided ‘BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)’ 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C:296:74: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 296 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C:301:60: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 301 | for (it2 = it1, ++it2; +it2 ; it2++) | ^~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C:305:68: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 305 | for (it3 = it2, ++it3; +it3 ; it3++) | ^~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/amberTorsion.C:362:117: warning: implicitly-declared ‘BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)’ is deprecated [-Wdeprecated-copy] 362 | tmp.values = values.values[j]; | ^ /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:25: note: because ‘BALL::CosineTorsion::SingleValues’ has user-provided ‘BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)’ 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFTypeProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFTypeProcessor.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFTypeProcessor.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFTypeProcessor.C.o -c /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:29, from /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:6: /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C: In member function ‘void BALL::GAFFTypeProcessor::annotateBondTypes_()’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:289:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 289 | BALL_FOREACH_BOND(*current_molecule_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C: In member function ‘void BALL::GAFFTypeProcessor::annotateBondTypes_()’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:289:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 289 | BALL_FOREACH_BOND(*current_molecule_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:289:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 289 | BALL_FOREACH_BOND(*current_molecule_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /<>/include/BALL/MOLMEC/AMBER/GAFFTypeProcessor.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C: In member function ‘void BALL::GAFFTypeProcessor::annotateBondTypes_()’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/MOLMEC/AMBER/GAFFTypeProcessor.C:289:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 289 | BALL_FOREACH_BOND(*current_molecule_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParser.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParser.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParser.C.o -c /<>/source/MOLMEC/AMBER/GAFFCESParser.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/MOLMEC/AMBER/GAFFCESParser.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/AMBER/GAFFCESParser.h:8, from /<>/source/MOLMEC/AMBER/GAFFCESParser.C:1: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/GAFFCESParser.C: In member function ‘bool BALL::GAFFCESParser::APSMatcher::hasBond_(BALL::Atom*, BALL::Atom*, int, int)’: /<>/source/MOLMEC/AMBER/GAFFCESParser.C:89:48: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 89 | for (bond_it = atom->beginBond(); +bond_it; ++bond_it) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/AMBER/GAFFCESParser.C: In member function ‘bool BALL::GAFFCESParser::APSMatcher::hasBond_(BALL::Atom*, BALL::Atom*, int, int)’: /<>/source/MOLMEC/AMBER/GAFFCESParser.C:89:48: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 89 | for (bond_it = atom->beginBond(); +bond_it; ++bond_it) | ^ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserParser.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserParser.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserParser.C.o -c /<>/build/source/MOLMEC/AMBER/GAFFCESParserParser.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserLexer.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserLexer.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/AMBER/GAFFCESParserLexer.C.o -c /<>/build/source/MOLMEC/AMBER/GAFFCESParserLexer.C /<>/build/source/MOLMEC/AMBER/GAFFCESParserLexer.C:1996:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] 1996 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmm.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmm.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmm.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmm.C.o -c /<>/source/MOLMEC/CHARMM/charmm.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/include/BALL/MOLMEC/CHARMM/charmm.h:15, from /<>/source/MOLMEC/CHARMM/charmm.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /<>/source/MOLMEC/CHARMM/charmm.C:10: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function ‘void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)’: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:63: warning: implicitly-declared ‘BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)’ is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:25: note: because ‘BALL::CosineTorsion::SingleValues’ has user-provided ‘BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)’ 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmBend.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmBend.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmBend.C.o -c /<>/source/MOLMEC/CHARMM/charmmBend.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmBend.h:14, from /<>/source/MOLMEC/CHARMM/charmmBend.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmBend.C: In member function ‘virtual bool BALL::CharmmBend::setup()’: /<>/source/MOLMEC/CHARMM/charmmBend.C:83:58: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 83 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmBend.C: In member function ‘virtual bool BALL::CharmmBend::setup()’: /<>/source/MOLMEC/CHARMM/charmmBend.C:83:58: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 83 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /<>/source/MOLMEC/CHARMM/charmmBend.C:86:44: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 86 | for (it1 = it2, ++it1; +it1 ; ++it1 ) | ^~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmImproperTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmImproperTorsion.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmImproperTorsion.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmImproperTorsion.C.o -c /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:23, from /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/quadraticImproperTorsion.h:12, from /<>/include/BALL/MOLMEC/CHARMM/charmmImproperTorsion.h:15: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C: In member function ‘virtual bool BALL::CharmmImproperTorsion::setup()’: /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:173:75: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 173 | for (atom_it = next_it->beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C: In member function ‘virtual bool BALL::CharmmImproperTorsion::setup()’: /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:173:75: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 173 | for (atom_it = next_it->beginAtom(); +atom_it; ++atom_it) | ^ /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:202:80: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 202 | for (atom_it = last_residue->beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:229:74: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 229 | for (atom_it = res_it->beginAtom(); (cys_res != 0) && +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmImproperTorsion.C:258:88: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | for (atom_it = last_residue->beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmNonBonded.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmNonBonded.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmNonBonded.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmNonBonded.C.o -c /<>/source/MOLMEC/CHARMM/charmmNonBonded.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:29, from /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /<>/include/BALL/MOLMEC/CHARMM/charmmNonBonded.h:17: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmNonBonded.C: In member function ‘const BALL::CharmmNonBonded& BALL::CharmmNonBonded::operator=(const BALL::CharmmNonBonded&)’: /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:137:49: warning: implicitly-declared ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’ is deprecated [-Wdeprecated-copy] 137 | ForceFieldComponent::operator = (charmm_non_bonded); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:17: note: because ‘BALL::ForceFieldComponent’ has user-provided ‘BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)’ 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h: In member function ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:34:27: warning: implicitly-declared ‘BALL::ScoringComponent& BALL::ScoringComponent::operator=(const BALL::ScoringComponent&)’ is deprecated [-Wdeprecated-copy] 34 | class BALL_EXPORT ForceFieldComponent : public ScoringComponent | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/SCORING/COMMON/scoringComponent.h:26:25: note: because ‘BALL::ScoringComponent’ has user-provided ‘BALL::ScoringComponent::ScoringComponent(const BALL::ScoringComponent&)’ 26 | ScoringComponent(const ScoringComponent& sc); | ^~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmNonBonded.C: In member function ‘const BALL::CharmmNonBonded& BALL::CharmmNonBonded::operator=(const BALL::CharmmNonBonded&)’: /<>/source/MOLMEC/CHARMM/charmmNonBonded.C:137:49: note: synthesized method ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’ first required here 137 | ForceFieldComponent::operator = (charmm_non_bonded); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmStretch.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmStretch.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmStretch.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmStretch.C.o -c /<>/source/MOLMEC/CHARMM/charmmStretch.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/include/BALL/MOLMEC/CHARMM/charmmStretch.h:14, from /<>/source/MOLMEC/CHARMM/charmmStretch.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmStretch.C: In member function ‘virtual bool BALL::CharmmStretch::setup()’: /<>/source/MOLMEC/CHARMM/charmmStretch.C:71:68: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 71 | for (bond_iterator = (*atom_it)->beginBond(); +bond_iterator; ++bond_iterator) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmStretch.C: In member function ‘virtual bool BALL::CharmmStretch::setup()’: /<>/source/MOLMEC/CHARMM/charmmStretch.C:71:68: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 71 | for (bond_iterator = (*atom_it)->beginBond(); +bond_iterator; ++bond_iterator) | ^ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmTorsion.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmTorsion.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/CHARMM/charmmTorsion.C.o -c /<>/source/MOLMEC/CHARMM/charmmTorsion.C In file included from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:15, from /<>/source/MOLMEC/CHARMM/charmmTorsion.C:5: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function ‘void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)’: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:63: warning: implicitly-declared ‘BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)’ is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:25: note: because ‘BALL::CosineTorsion::SingleValues’ has user-provided ‘BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)’ 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/CHARMM/charmmTorsion.h:23: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmTorsion.C: In member function ‘virtual bool BALL::CharmmTorsion::setup()’: /<>/source/MOLMEC/CHARMM/charmmTorsion.C:131:58: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 131 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/MOLMEC/PARAMETER/atomTypes.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:13: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmTorsion.C: In member function ‘virtual bool BALL::CharmmTorsion::setup()’: /<>/source/MOLMEC/CHARMM/charmmTorsion.C:131:58: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 131 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ /<>/source/MOLMEC/CHARMM/charmmTorsion.C:140:74: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 140 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmTorsion.C:155:119: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 155 | for (it3 = const_cast(it1->getSecondAtom())->beginBond(); +it3 ; ++it3) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmTorsion.C:198:139: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 198 | for (res_it = chain->beginResidue(); +res_it; last_res = &*res_it, ++res_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/CHARMM/charmmTorsion.C: In member function ‘virtual bool BALL::CharmmTorsion::setup()’: /<>/source/MOLMEC/CHARMM/charmmTorsion.C:198:139: note: synthesized method ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ first required here 198 | for (res_it = chain->beginResidue(); +res_it; last_res = &*res_it, ++res_it) | ^ /<>/source/MOLMEC/CHARMM/charmmTorsion.C:304:125: warning: implicitly-declared ‘BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)’ is deprecated [-Wdeprecated-copy] 304 | tmp.values = values.values[j]; | ^ /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:25: note: because ‘BALL::CosineTorsion::SingleValues’ has user-provided ‘BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)’ 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/assignTypes.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/assignTypes.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/assignTypes.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/assignTypes.C.o -c /<>/source/MOLMEC/COMMON/assignTypes.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/source/MOLMEC/COMMON/assignTypes.C:11: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/atomTypes.h:9, from /<>/include/BALL/MOLMEC/COMMON/assignTypes.h:17, from /<>/source/MOLMEC/COMMON/assignTypes.C:6: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/atomVector.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/atomVector.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/atomVector.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/atomVector.C.o -c /<>/source/MOLMEC/COMMON/atomVector.C [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/bendComponent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/bendComponent.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/bendComponent.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/bendComponent.C.o -c /<>/source/MOLMEC/COMMON/bendComponent.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/bendComponent.h:14, from /<>/source/MOLMEC/COMMON/bendComponent.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/chargeRuleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/chargeRuleProcessor.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/chargeRuleProcessor.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/chargeRuleProcessor.C.o -c /<>/source/MOLMEC/COMMON/chargeRuleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceField.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceField.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceField.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceField.C.o -c /<>/source/MOLMEC/COMMON/forceField.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/COMMON/forceField.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/COMMON/forceField.C: In member function ‘void BALL::ForceField::collectAtoms_(const BALL::System&)’: /<>/source/MOLMEC/COMMON/forceField.C:326:57: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 326 | for (atom_it = system.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceFieldComponent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceFieldComponent.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceFieldComponent.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/forceFieldComponent.C.o -c /<>/source/MOLMEC/COMMON/forceFieldComponent.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/source/MOLMEC/COMMON/forceFieldComponent.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/COMMON/forceFieldComponent.C: In copy constructor ‘BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)’: /<>/source/MOLMEC/COMMON/forceFieldComponent.C:34:9: warning: base class ‘class BALL::ScoringComponent’ should be explicitly initialized in the copy constructor [-Wextra] 34 | ForceFieldComponent::ForceFieldComponent(const ForceFieldComponent& force_field_component) | ^~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/gradient.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/gradient.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/gradient.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/gradient.C.o -c /<>/source/MOLMEC/COMMON/gradient.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/periodicBoundary.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/periodicBoundary.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/periodicBoundary.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/periodicBoundary.C.o -c /<>/source/MOLMEC/COMMON/periodicBoundary.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/COMMON/periodicBoundary.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/COMMON/periodicBoundary.h:15, from /<>/source/MOLMEC/COMMON/periodicBoundary.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:28, from /<>/source/MOLMEC/COMMON/periodicBoundary.C:7: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1667:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = const BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/radiusRuleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/radiusRuleProcessor.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/radiusRuleProcessor.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/radiusRuleProcessor.C.o -c /<>/source/MOLMEC/COMMON/radiusRuleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleEvaluator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleEvaluator.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleEvaluator.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleEvaluator.C.o -c /<>/source/MOLMEC/COMMON/ruleEvaluator.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleProcessor.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleProcessor.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/ruleProcessor.C.o -c /<>/source/MOLMEC/COMMON/ruleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShot.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShot.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShot.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShot.C.o -c /<>/source/MOLMEC/COMMON/snapShot.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/source/MOLMEC/COMMON/snapShot.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /<>/source/MOLMEC/COMMON/snapShot.C:6: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShotManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShotManager.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShotManager.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/snapShotManager.C.o -c /<>/source/MOLMEC/COMMON/snapShotManager.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/COMMON/snapShotManager.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MOLMEC/COMMON/snapShot.h:16, from /<>/include/BALL/MOLMEC/COMMON/snapShotManager.h:11, from /<>/source/MOLMEC/COMMON/snapShotManager.C:8: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:10, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/KERNEL/PTE.h:15, from /<>/source/MOLMEC/COMMON/snapShotManager.C:7: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::SnapShot&}; _Tp = BALL::SnapShot; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BALL::SnapShot}; _Tp = BALL::SnapShot; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::SnapShot; _Alloc = std::allocator]’, inlined from ‘bool BALL::SnapShotManager::readFromFile()’ at /<>/source/MOLMEC/COMMON/snapShotManager.C:613:30: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BALL::SnapShot}; _Tp = BALL::SnapShot; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BALL::SnapShot; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void BALL::SnapShotManager::takeSnapShot()’ at /<>/source/MOLMEC/COMMON/snapShotManager.C:396:29: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/support.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/support.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/support.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/support.C.o -c /<>/source/MOLMEC/COMMON/support.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/source/MOLMEC/COMMON/support.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/simpleBox3.h:15, from /<>/include/BALL/MOLMEC/COMMON/support.h:16: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/COMMON/support.C: In function ‘BALL::Size BALL::MolmecSupport::addNonOverlappingMolecules(BALL::System&, const BALL::HashGrid3&, const BALL::System&, const BALL::SimpleBox3&, double)’: /<>/source/MOLMEC/COMMON/support.C:496:66: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 496 | for (atom_it = mol_it->beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/COMMON/support.C: In function ‘void BALL::MolmecSupport::adaptWaterBox(BALL::System&, const BALL::SimpleBox3&)’: /<>/source/MOLMEC/COMMON/support.C:652:61: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 652 | atom_it = mol_it->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/COMMON/support.C: In function ‘void BALL::MolmecSupport::adaptWaterBox(BALL::System&, const BALL::SimpleBox3&)’: /<>/source/MOLMEC/COMMON/support.C:652:61: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 652 | atom_it = mol_it->beginAtom(); | ^ /<>/source/MOLMEC/COMMON/support.C:701:74: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 701 | for (atom_it = mol_it->beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/COMMON/support.h:28: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/MOLMEC/COMMON/support.C:234:22: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/forwardIterator.h:9, from /<>/include/BALL/DATATYPE/hashSet.h:17, from /<>/include/BALL/CONCEPT/persistenceManager.h:21: /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/source/MOLMEC/COMMON/support.C:450:36: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = const BALL::Atom*]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/MOLMEC/COMMON/support.C:503:29: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/stretchComponent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/stretchComponent.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/stretchComponent.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/stretchComponent.C.o -c /<>/source/MOLMEC/COMMON/stretchComponent.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/COMMON/stretchComponent.h:14, from /<>/source/MOLMEC/COMMON/stretchComponent.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typenameRuleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typenameRuleProcessor.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typenameRuleProcessor.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typenameRuleProcessor.C.o -c /<>/source/MOLMEC/COMMON/typenameRuleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typeRuleProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typeRuleProcessor.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typeRuleProcessor.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/COMMON/typeRuleProcessor.C.o -c /<>/source/MOLMEC/COMMON/typeRuleProcessor.C [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/energyMinimizer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/energyMinimizer.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/energyMinimizer.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/energyMinimizer.C.o -c /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/source/MOLMEC/MINIMIZATION/energyMinimizer.C:7: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/lineSearch.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/lineSearch.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/lineSearch.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/lineSearch.C.o -c /<>/source/MOLMEC/MINIMIZATION/lineSearch.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MINIMIZATION/lineSearch.C:10: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/source/MOLMEC/MINIMIZATION/lineSearch.C:8: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/steepestDescent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/steepestDescent.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/steepestDescent.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/steepestDescent.C.o -c /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/steepestDescent.h:11, from /<>/source/MOLMEC/MINIMIZATION/steepestDescent.C:7: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/strangLBFGS.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/strangLBFGS.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/strangLBFGS.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/strangLBFGS.C.o -c /<>/source/MOLMEC/MINIMIZATION/strangLBFGS.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MINIMIZATION/strangLBFGS.C:10: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/strangLBFGS.h:11, from /<>/source/MOLMEC/MINIMIZATION/strangLBFGS.C:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/shiftedLVMM.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/shiftedLVMM.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/shiftedLVMM.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/shiftedLVMM.C.o -c /<>/source/MOLMEC/MINIMIZATION/shiftedLVMM.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:11: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/shiftedLVMM.h:11, from /<>/source/MOLMEC/MINIMIZATION/shiftedLVMM.C:10: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/conjugateGradient.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/conjugateGradient.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/conjugateGradient.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MINIMIZATION/conjugateGradient.C.o -c /<>/source/MOLMEC/MINIMIZATION/conjugateGradient.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MINIMIZATION/conjugateGradient.C:11: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MINIMIZATION/energyMinimizer.h:13, from /<>/include/BALL/MOLMEC/MINIMIZATION/conjugateGradient.h:11, from /<>/source/MOLMEC/MINIMIZATION/conjugateGradient.C:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/molecularDynamics.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/molecularDynamics.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/molecularDynamics.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/molecularDynamics.C.o -c /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /<>/source/MOLMEC/MDSIMULATION/molecularDynamics.C:7: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/microCanonicalMD.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/microCanonicalMD.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/microCanonicalMD.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/microCanonicalMD.C.o -c /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /<>/include/BALL/MOLMEC/MDSIMULATION/microCanonicalMD.h:11, from /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:7: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:14: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::MicroCanonicalMD::AuxFactors&}; _Tp = BALL::MicroCanonicalMD::AuxFactors; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::MicroCanonicalMD::AuxFactors; _Alloc = std::allocator]’, inlined from ‘void BALL::MicroCanonicalMD::calculateFactors()’ at /<>/source/MOLMEC/MDSIMULATION/microCanonicalMD.C:119:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/canonicalMD.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/canonicalMD.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/canonicalMD.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MDSIMULATION/canonicalMD.C.o -c /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/MOLMEC/MDSIMULATION/molecularDynamics.h:18, from /<>/include/BALL/MOLMEC/MDSIMULATION/canonicalMD.h:11, from /<>/source/MOLMEC/MDSIMULATION/canonicalMD.C:6: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94.C.o -c /<>/source/MOLMEC/MMFF94/MMFF94.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /<>/source/MOLMEC/MMFF94/MMFF94.C:11: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/DATATYPE/string.h:15, from /<>/include/BALL/SYSTEM/path.h:22, from /<>/source/MOLMEC/MMFF94/MMFF94.C:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94StretchBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94StretchBend.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94StretchBend.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94StretchBend.C.o -c /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94StretchBend.h:15: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C: In member function ‘bool BALL::MMFF94StretchBend::setupBends_()’: /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:189:58: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 189 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C: In member function ‘bool BALL::MMFF94StretchBend::setupBends_()’: /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:189:58: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 189 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:193:44: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 193 | for (it1 = it2, ++it1; +it1 ; ++it1) | ^~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::Bend&}; _Tp = BALL::MMFF94StretchBend::Bend; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::Stretch&}; _Tp = BALL::MMFF94StretchBend::Stretch; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::MMFF94StretchBend::StretchBend&}; _Tp = BALL::MMFF94StretchBend::StretchBend; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::MMFF94StretchBend::Bend; _Alloc = std::allocator]’, inlined from ‘bool BALL::MMFF94StretchBend::setupBends_()’ at /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:244:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::MMFF94StretchBend::Bend; _Alloc = std::allocator]’, inlined from ‘bool BALL::MMFF94StretchBend::setupBends_()’ at /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:256:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::MMFF94StretchBend::Stretch; _Alloc = std::allocator]’, inlined from ‘bool BALL::MMFF94StretchBend::setupStretches_()’ at /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:316:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::MMFF94StretchBend::Stretch; _Alloc = std::allocator]’, inlined from ‘bool BALL::MMFF94StretchBend::setupStretches_()’ at /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:331:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::MMFF94StretchBend::StretchBend; _Alloc = std::allocator]’, inlined from ‘bool BALL::MMFF94StretchBend::setupStretchBends_()’ at /<>/source/MOLMEC/MMFF94/MMFF94StretchBend.C:419:28: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Torsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Torsion.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Torsion.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Torsion.C.o -c /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Torsion.h:19: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C: In member function ‘virtual bool BALL::MMFF94Torsion::setup()’: /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:144:58: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 144 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C: In member function ‘virtual bool BALL::MMFF94Torsion::setup()’: /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:144:58: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 144 | for (it1 = (*atom_it)->beginBond(); +it1 ; ++ it1) | ^ /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:153:66: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 153 | for (it2 = (*atom_it)->beginBond(); +it2 ; ++it2) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:163:69: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 163 | for (it3 = atom3->beginBond(); +it3 ; ++it3) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::MMFF94Torsion::Torsion&}; _Tp = BALL::MMFF94Torsion::Torsion; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::MMFF94Torsion::Torsion; _Alloc = std::allocator]’, inlined from ‘virtual bool BALL::MMFF94Torsion::setup()’ at /<>/source/MOLMEC/MMFF94/MMFF94Torsion.C:268:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Parameters.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Parameters.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Parameters.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Parameters.C.o -c /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:17, from /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:10: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual bool BALL::MMFF94TorsionParameters::setup_(const std::vector >&)’ at /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:812:32: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual bool BALL::MMFF94TorsionParameters::setup_(const std::vector >&)’ at /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:813:32: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual bool BALL::MMFF94TorsionParameters::setup_(const std::vector >&)’ at /<>/source/MOLMEC/MMFF94/MMFF94Parameters.C:814:32: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C.o -c /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.h:19: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C: In member function ‘virtual bool BALL::MMFF94OutOfPlaneBend::setup()’: /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:130:62: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 130 | for (bond_it = (*atom_it)->beginBond(); +bond_it; ++bond_it) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C: In member function ‘virtual bool BALL::MMFF94OutOfPlaneBend::setup()’: /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:130:62: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 130 | for (bond_it = (*atom_it)->beginBond(); +bond_it; ++bond_it) | ^ /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:140:63: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 140 | for (bond_it = central_atom.beginBond(); +bond_it; ++bond_it) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::MMFF94OutOfPlaneBend::OutOfPlaneBend&}; _Tp = BALL::MMFF94OutOfPlaneBend::OutOfPlaneBend; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::MMFF94OutOfPlaneBend::OutOfPlaneBend; _Alloc = std::allocator]’, inlined from ‘virtual bool BALL::MMFF94OutOfPlaneBend::setup()’ at /<>/source/MOLMEC/MMFF94/MMFF94OutOfPlaneBend.C:187:48: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Processors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Processors.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Processors.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94Processors.C.o -c /<>/source/MOLMEC/MMFF94/MMFF94Processors.C In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:13, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:7: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94Processors.h:23: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/KERNEL/bond.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Processors.C: In member function ‘virtual void BALL::MMFF94AtomTyper::assignTo(BALL::System&)’: /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:439:27: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 439 | ait = s.beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94Processors.C: In member function ‘virtual void BALL::MMFF94AtomTyper::assignTo(BALL::System&)’: /<>/source/MOLMEC/MMFF94/MMFF94Processors.C:439:27: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 439 | ait = s.beginAtom(); | ^ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94NonBonded.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94NonBonded.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94NonBonded.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/MMFF94/MMFF94NonBonded.C.o -c /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:11, from /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94NonBonded.h:19: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C: In member function ‘const BALL::MMFF94NonBonded& BALL::MMFF94NonBonded::operator=(const BALL::MMFF94NonBonded&)’: /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:103:49: warning: implicitly-declared ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’ is deprecated [-Wdeprecated-copy] 103 | ForceFieldComponent::operator = (anb); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:17: note: because ‘BALL::ForceFieldComponent’ has user-provided ‘BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)’ 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h: In member function ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:34:27: warning: implicitly-declared ‘BALL::ScoringComponent& BALL::ScoringComponent::operator=(const BALL::ScoringComponent&)’ is deprecated [-Wdeprecated-copy] 34 | class BALL_EXPORT ForceFieldComponent : public ScoringComponent | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/SCORING/COMMON/scoringComponent.h:26:25: note: because ‘BALL::ScoringComponent’ has user-provided ‘BALL::ScoringComponent::ScoringComponent(const BALL::ScoringComponent&)’ 26 | ScoringComponent(const ScoringComponent& sc); | ^~~~~~~~~~~~~~~~ /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C: In member function ‘const BALL::MMFF94NonBonded& BALL::MMFF94NonBonded::operator=(const BALL::MMFF94NonBonded&)’: /<>/source/MOLMEC/MMFF94/MMFF94NonBonded.C:103:49: note: synthesized method ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’ first required here 103 | ForceFieldComponent::operator = (anb); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/atomTypes.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/atomTypes.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/atomTypes.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/atomTypes.C.o -c /<>/source/MOLMEC/PARAMETER/atomTypes.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/charmmEEF1.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/charmmEEF1.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/charmmEEF1.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/charmmEEF1.C.o -c /<>/source/MOLMEC/PARAMETER/charmmEEF1.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/cosineTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/cosineTorsion.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/cosineTorsion.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/cosineTorsion.C.o -c /<>/source/MOLMEC/PARAMETER/cosineTorsion.C In file included from /<>/source/MOLMEC/PARAMETER/cosineTorsion.C:5: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h: In member function ‘void BALL::CosineTorsion::Values::set(const BALL::CosineTorsion::Values&)’: /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:105:63: warning: implicitly-declared ‘BALL::CosineTorsion::SingleValues& BALL::CosineTorsion::SingleValues::operator=(const BALL::CosineTorsion::SingleValues&)’ is deprecated [-Wdeprecated-copy] 105 | values[i] = v.values[i]; | ^ /<>/include/BALL/MOLMEC/PARAMETER/cosineTorsion.h:42:25: note: because ‘BALL::CosineTorsion::SingleValues’ has user-provided ‘BALL::CosineTorsion::SingleValues::SingleValues(const BALL::CosineTorsion::SingleValues&)’ 42 | SingleValues(const SingleValues& v) | ^~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/forceFieldParameters.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/forceFieldParameters.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/forceFieldParameters.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/forceFieldParameters.C.o -c /<>/source/MOLMEC/PARAMETER/forceFieldParameters.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/lennardJones.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/lennardJones.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/lennardJones.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/lennardJones.C.o -c /<>/source/MOLMEC/PARAMETER/lennardJones.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/potential1210.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/potential1210.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/potential1210.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/potential1210.C.o -c /<>/source/MOLMEC/PARAMETER/potential1210.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticAngleBend.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticAngleBend.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticAngleBend.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticAngleBend.C.o -c /<>/source/MOLMEC/PARAMETER/quadraticAngleBend.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticBondStretch.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticBondStretch.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticBondStretch.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticBondStretch.C.o -c /<>/source/MOLMEC/PARAMETER/quadraticBondStretch.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C.o -c /<>/source/MOLMEC/PARAMETER/quadraticImproperTorsion.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/residueTorsions.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/residueTorsions.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/residueTorsions.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/residueTorsions.C.o -c /<>/source/MOLMEC/PARAMETER/residueTorsions.C [ 42%] Building CXX object CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/templates.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/templates.C.o -MF CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/templates.C.o.d -o CMakeFiles/BALL.dir/source/MOLMEC/PARAMETER/templates.C.o -c /<>/source/MOLMEC/PARAMETER/templates.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/PARAMETER/templates.h:15, from /<>/source/MOLMEC/PARAMETER/templates.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/templates.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/anisotropyShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/anisotropyShiftProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/anisotropyShiftProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/anisotropyShiftProcessor.C.o -c /<>/source/NMR/anisotropyShiftProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/NMR/anisotropyShiftProcessor.h:11, from /<>/source/NMR/anisotropyShiftProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/KERNEL/bond.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/clearShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/clearShiftProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/clearShiftProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/clearShiftProcessor.C.o -c /<>/source/NMR/clearShiftProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/clearShiftProcessor.h:11, from /<>/source/NMR/clearShiftProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/EFShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/EFShiftProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/EFShiftProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/EFShiftProcessor.C.o -c /<>/source/NMR/EFShiftProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/EFShiftProcessor.h:11, from /<>/source/NMR/EFShiftProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/empiricalHSShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/empiricalHSShiftProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/empiricalHSShiftProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/empiricalHSShiftProcessor.C.o -c /<>/source/NMR/empiricalHSShiftProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/include/BALL/FORMAT/PDBFile.h:25, from /<>/source/NMR/empiricalHSShiftProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/FORMAT/PDBFile.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/NMR/empiricalHSShiftProcessor.C:6: /<>/include/BALL/NMR/empiricalHSShiftProcessor.h: In member function ‘BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_& BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_::operator=(const BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_&)’: /<>/include/BALL/NMR/empiricalHSShiftProcessor.h:282:23: warning: implicitly-declared ‘BALL::CubicSpline2D& BALL::CubicSpline2D::operator=(const BALL::CubicSpline2D&)’ is deprecated [-Wdeprecated-copy] 282 | class ShiftHyperSurface_ | ^~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/NMR/empiricalHSShiftProcessor.h:5: /<>/include/BALL/MATHS/cubicSpline2D.h:163:25: note: because ‘BALL::CubicSpline2D’ has user-provided ‘BALL::CubicSpline2D::CubicSpline2D(const BALL::CubicSpline2D&)’ 163 | CubicSpline2D(const CubicSpline2D& cs2D); | ^~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C: In member function ‘virtual void BALL::EmpiricalHSShiftProcessor::init()’: /<>/source/NMR/empiricalHSShiftProcessor.C:205:75: note: synthesized method ‘BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_& BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_::operator=(const BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_&)’ first required here 205 | hypersurfaces_[atom_type][tuple]= shs; | ^~~ /<>/source/NMR/empiricalHSShiftProcessor.C: In member function ‘float BALL::EmpiricalHSShiftProcessor::PropertiesForShift_::getChiAngle_(BALL::Residue*)’: /<>/source/NMR/empiricalHSShiftProcessor.C:475:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 475 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C: In member function ‘float BALL::EmpiricalHSShiftProcessor::PropertiesForShift_::getChiAngle_(BALL::Residue*)’: /<>/source/NMR/empiricalHSShiftProcessor.C:475:51: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 475 | r_it = residue->beginAtom(); | ^ /<>/source/NMR/empiricalHSShiftProcessor.C:488:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 488 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:506:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 506 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:519:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 519 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:532:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 532 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:545:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 545 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C: In member function ‘float BALL::EmpiricalHSShiftProcessor::PropertiesForShift_::getChi2Angle_(BALL::Residue*)’: /<>/source/NMR/empiricalHSShiftProcessor.C:654:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 654 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:667:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 667 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:681:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 681 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:694:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 694 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:707:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 707 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:721:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 721 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:738:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 738 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:755:51: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 755 | r_it = residue->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C: In constructor ‘BALL::EmpiricalHSShiftProcessor::ShiftHyperSurface_::ShiftHyperSurface_(BALL::String, BALL::String, BALL::String, BALL::String, int)’: /<>/source/NMR/empiricalHSShiftProcessor.C:1641:49: warning: implicitly-declared ‘BALL::CubicSpline1D& BALL::CubicSpline1D::operator=(const BALL::CubicSpline1D&)’ is deprecated [-Wdeprecated-copy] 1641 | s1d_[first_property_] = s; | ^ In file included from /<>/include/BALL/MATHS/cubicSpline2D.h:8: /<>/include/BALL/MATHS/cubicSpline1D.h:124:25: note: because ‘BALL::CubicSpline1D’ has user-provided ‘BALL::CubicSpline1D::CubicSpline1D(const BALL::CubicSpline1D&)’ 124 | CubicSpline1D(const CubicSpline1D& cs1D); | ^~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:1679:84: warning: implicitly-declared ‘BALL::CubicSpline2D& BALL::CubicSpline2D::operator=(const BALL::CubicSpline2D&)’ is deprecated [-Wdeprecated-copy] 1679 | s2d_ = CubicSpline2D(x_axis, y_axis, sample_values_); | ^ /<>/include/BALL/MATHS/cubicSpline2D.h:163:25: note: because ‘BALL::CubicSpline2D’ has user-provided ‘BALL::CubicSpline2D::CubicSpline2D(const BALL::CubicSpline2D&)’ 163 | CubicSpline2D(const CubicSpline2D& cs2D); | ^~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:1732:67: warning: implicitly-declared ‘BALL::CubicSpline1D& BALL::CubicSpline1D::operator=(const BALL::CubicSpline1D&)’ is deprecated [-Wdeprecated-copy] 1732 | s1d_[y_axis_values_[i]] = s; | ^ /<>/include/BALL/MATHS/cubicSpline1D.h:124:25: note: because ‘BALL::CubicSpline1D’ has user-provided ‘BALL::CubicSpline1D::CubicSpline1D(const BALL::CubicSpline1D&)’ 124 | CubicSpline1D(const CubicSpline1D& cs1D); | ^~~~~~~~~~~~~ /<>/source/NMR/empiricalHSShiftProcessor.C:1760:67: warning: implicitly-declared ‘BALL::CubicSpline1D& BALL::CubicSpline1D::operator=(const BALL::CubicSpline1D&)’ is deprecated [-Wdeprecated-copy] 1760 | s1d_[y_axis_values_[i]] = s; | ^ /<>/include/BALL/MATHS/cubicSpline1D.h:124:25: note: because ‘BALL::CubicSpline1D’ has user-provided ‘BALL::CubicSpline1D::CubicSpline1D(const BALL::CubicSpline1D&)’ 124 | CubicSpline1D(const CubicSpline1D& cs1D); | ^~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/experiment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/experiment.C.o -MF CMakeFiles/BALL.dir/source/NMR/experiment.C.o.d -o CMakeFiles/BALL.dir/source/NMR/experiment.C.o -c /<>/source/NMR/experiment.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/experiment.h:15, from /<>/source/NMR/experiment.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/peakList.h:11, from /<>/include/BALL/NMR/experiment.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/HBondShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/HBondShiftProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/HBondShiftProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/HBondShiftProcessor.C.o -c /<>/source/NMR/HBondShiftProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/NMR/HBondShiftProcessor.h:15, from /<>/source/NMR/HBondShiftProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/KERNEL/bond.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/HBondShiftProcessor.C: In member function ‘virtual bool BALL::HBondShiftProcessor::finish()’: /<>/source/NMR/HBondShiftProcessor.C:234:84: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 234 | for (bi = acceptors_[a]->beginBond(); +bi; ++bi) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/NMR/HBondShiftProcessor.C: In member function ‘virtual bool BALL::HBondShiftProcessor::finish()’: /<>/source/NMR/HBondShiftProcessor.C:234:84: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 234 | for (bi = acceptors_[a]->beginBond(); +bi; ++bi) | ^ /<>/source/NMR/HBondShiftProcessor.C:242:81: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 242 | for (bi = donors_[d]->beginBond(); +bi; ++bi) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/BALL.dir/source/NMR/haighMallionShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/haighMallionShiftProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/haighMallionShiftProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/haighMallionShiftProcessor.C.o -c /<>/source/NMR/haighMallionShiftProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/haighMallionShiftProcessor.h:16, from /<>/source/NMR/haighMallionShiftProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/createSpectrumProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/createSpectrumProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/createSpectrumProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/createSpectrumProcessor.C.o -c /<>/source/NMR/createSpectrumProcessor.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/createSpectrumProcessor.h:35, from /<>/source/NMR/createSpectrumProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/NMR/peak.h:11, from /<>/include/BALL/NMR/createSpectrumProcessor.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/peak.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/peak.C.o -MF CMakeFiles/BALL.dir/source/NMR/peak.C.o.d -o CMakeFiles/BALL.dir/source/NMR/peak.C.o -c /<>/source/NMR/peak.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/peakList.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/peakList.C.o -MF CMakeFiles/BALL.dir/source/NMR/peakList.C.o.d -o CMakeFiles/BALL.dir/source/NMR/peakList.C.o -c /<>/source/NMR/peakList.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/shiftModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/shiftModel.C.o -MF CMakeFiles/BALL.dir/source/NMR/shiftModel.C.o.d -o CMakeFiles/BALL.dir/source/NMR/shiftModel.C.o -c /<>/source/NMR/shiftModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/shiftModel.h:11, from /<>/source/NMR/shiftModel.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/shiftModule.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/shiftModule.C.o -MF CMakeFiles/BALL.dir/source/NMR/shiftModule.C.o.d -o CMakeFiles/BALL.dir/source/NMR/shiftModule.C.o -c /<>/source/NMR/shiftModule.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/source/NMR/shiftModule.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/spectrum.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/spectrum.C.o -MF CMakeFiles/BALL.dir/source/NMR/spectrum.C.o.d -o CMakeFiles/BALL.dir/source/NMR/spectrum.C.o -c /<>/source/NMR/spectrum.C In file included from /<>/include/BALL/NMR/spectrum.h:335, from /<>/source/NMR/spectrum.C:5: /<>/include/BALL/NMR/spectrum.iC: In constructor ‘BALL::Spectrum::Spectrum(const std::vector&, const PositionType&, const PositionType&, const PositionType&) [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float; PositionType = float]’: /<>/include/BALL/NMR/spectrum.iC:20:45: warning: catching polymorphic type ‘class BALL::Exception::OutOfGrid’ by value [-Wcatch-value=] 20 | catch (Exception::OutOfGrid e) | ^ /<>/include/BALL/NMR/spectrum.iC: In constructor ‘BALL::Spectrum::Spectrum(const std::vector&, const PositionType&, const PositionType&, const PositionType&) [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2; PositionType = BALL::TVector2]’: /<>/include/BALL/NMR/spectrum.iC:46:45: warning: catching polymorphic type ‘class BALL::Exception::OutOfGrid’ by value [-Wcatch-value=] 46 | catch (Exception::OutOfGrid e) | ^ /<>/include/BALL/NMR/spectrum.iC: In member function ‘double BALL::Spectrum::difference(const BALL::Spectrum&) const [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float]’: /<>/include/BALL/NMR/spectrum.iC:135:53: warning: catching polymorphic type ‘class BALL::Exception::OutOfGrid’ by value [-Wcatch-value=] 135 | catch (Exception::OutOfGrid e) | ^ /<>/include/BALL/NMR/spectrum.iC: In member function ‘double BALL::Spectrum::difference(const BALL::Spectrum&) const [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2]’: /<>/include/BALL/NMR/spectrum.iC:177:53: warning: catching polymorphic type ‘class BALL::Exception::OutOfGrid’ by value [-Wcatch-value=] 177 | catch (Exception::OutOfGrid e) | ^ /<>/include/BALL/NMR/spectrum.iC: In member function ‘double BALL::Spectrum::getFourierDifference(const BALL::Spectrum&, float, float) [with DataT = BALL::TRegularData1D; PeakT = BALL::Peak; PositionT = float]’: /<>/include/BALL/NMR/spectrum.iC:752:101: warning: unused parameter ‘other_spectrum’ [-Wunused-parameter] 752 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/include/BALL/NMR/spectrum.iC:752:123: warning: unused parameter ‘min_freq’ [-Wunused-parameter] 752 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~^~~~~~~~ /<>/include/BALL/NMR/spectrum.iC:752:139: warning: unused parameter ‘max_freq’ [-Wunused-parameter] 752 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~^~~~~~~~ /<>/include/BALL/NMR/spectrum.iC: In member function ‘double BALL::Spectrum::getFourierDifference(const BALL::Spectrum&, float, float) [with DataT = BALL::TRegularData2D; PeakT = BALL::Peak >; PositionT = BALL::TVector2]’: /<>/include/BALL/NMR/spectrum.iC:827:101: warning: unused parameter ‘other_spectrum’ [-Wunused-parameter] 827 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /<>/include/BALL/NMR/spectrum.iC:827:123: warning: unused parameter ‘min_freq’ [-Wunused-parameter] 827 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~^~~~~~~~ /<>/include/BALL/NMR/spectrum.iC:827:139: warning: unused parameter ‘max_freq’ [-Wunused-parameter] 827 | double Spectrum::getFourierDifference(const Spectrum& other_spectrum, float min_freq, float max_freq) | ~~~~~~^~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/johnsonBoveyShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/johnsonBoveyShiftProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/johnsonBoveyShiftProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/johnsonBoveyShiftProcessor.C.o -c /<>/source/NMR/johnsonBoveyShiftProcessor.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/johnsonBoveyShiftProcessor.h:16, from /<>/source/NMR/johnsonBoveyShiftProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from /<>/include/BALL/KERNEL/expression.h:13, from /<>/include/BALL/NMR/johnsonBoveyShiftProcessor.h:12: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/NMR/randomCoilShiftProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/NMR/randomCoilShiftProcessor.C.o -MF CMakeFiles/BALL.dir/source/NMR/randomCoilShiftProcessor.C.o.d -o CMakeFiles/BALL.dir/source/NMR/randomCoilShiftProcessor.C.o -c /<>/source/NMR/randomCoilShiftProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/NMR/shiftModule.h:11, from /<>/include/BALL/NMR/randomCoilShiftProcessor.h:8, from /<>/source/NMR/randomCoilShiftProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/BALLPlugin.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/PLUGIN/BALLPlugin.C.o -MF CMakeFiles/BALL.dir/source/PLUGIN/BALLPlugin.C.o.d -o CMakeFiles/BALL.dir/source/PLUGIN/BALLPlugin.C.o -c /<>/source/PLUGIN/BALLPlugin.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/pluginManager.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/PLUGIN/pluginManager.C.o -MF CMakeFiles/BALL.dir/source/PLUGIN/pluginManager.C.o.d -o CMakeFiles/BALL.dir/source/PLUGIN/pluginManager.C.o -c /<>/source/PLUGIN/pluginManager.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/PLUGIN/pluginHandler.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/PLUGIN/pluginHandler.C.o -MF CMakeFiles/BALL.dir/source/PLUGIN/pluginHandler.C.o.d -o CMakeFiles/BALL.dir/source/PLUGIN/pluginHandler.C.o -c /<>/source/PLUGIN/pluginHandler.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/aromaticityProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/aromaticityProcessor.C.o -MF CMakeFiles/BALL.dir/source/QSAR/aromaticityProcessor.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/aromaticityProcessor.C.o -c /<>/source/QSAR/aromaticityProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/aromaticityProcessor.h:10, from /<>/source/QSAR/aromaticityProcessor.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/QSAR/aromaticityProcessor.C:10: /<>/source/QSAR/aromaticityProcessor.C: In member function ‘void BALL::AromaticityProcessor::aromatize(const std::vector >&, BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/aromaticityProcessor.C:660:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 660 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/aromaticityProcessor.C: In member function ‘void BALL::AromaticityProcessor::aromatize(const std::vector >&, BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/aromaticityProcessor.C:660:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 660 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/aromaticityProcessor.C:660:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 660 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/aromaticityProcessor.C: In member function ‘void BALL::AromaticityProcessor::aromatize(const std::vector >&, BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/aromaticityProcessor.C:660:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 660 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/source/QSAR/aromaticityProcessor.C: In member function ‘bool BALL::AromaticityProcessor::hasConjugatedDoubleBonds_(BALL::HashSet)’: /<>/source/QSAR/aromaticityProcessor.C:956:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 956 | bond_it = it; | ^~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/aromaticityProcessor.C: In member function ‘BALL::Size BALL::AromaticityProcessor::countPiElectrons_(BALL::HashSet&)’: /<>/source/QSAR/aromaticityProcessor.C:1008:64: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 1008 | for (j=(*i)->beginBond();j!=(*i)->endBond();++j) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/aromaticityProcessor.C:1051:64: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 1051 | for (j=(*i)->beginBond();j!=(*i)->endBond();++j) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/automaticModelCreator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/automaticModelCreator.C.o -MF CMakeFiles/BALL.dir/source/QSAR/automaticModelCreator.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/automaticModelCreator.C.o -c /<>/source/QSAR/automaticModelCreator.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/automaticModelCreator.h:2, from /<>/source/QSAR/automaticModelCreator.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/automaticModelCreator.C: In member function ‘void BALL::QSAR::AutomaticModelCreator::optimizeParameters(BALL::QSAR::Model*)’: /<>/source/QSAR/automaticModelCreator.C:35:46: warning: catching polymorphic type ‘class BALL::QSAR::Exception::SingularMatrixError’ by value [-Wcatch-value=] 35 | catch(Exception::SingularMatrixError e) | ^ /<>/source/QSAR/automaticModelCreator.C: In member function ‘BALL::QSAR::Model* BALL::QSAR::AutomaticModelCreator::generateModel()’: /<>/source/QSAR/automaticModelCreator.C:80:57: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] 80 | catch(BALL::Exception::GeneralException e) | ^ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Model* BALL::QSAR::AutomaticModelCreator::generateModel()’ at /<>/source/QSAR/automaticModelCreator.C:134:24: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/bayesModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/bayesModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/bayesModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/bayesModel.C.o -c /<>/source/QSAR/bayesModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/bayesModel.h:10, from /<>/source/QSAR/bayesModel.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/classificationModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/classificationModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/classificationModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/classificationModel.C.o -c /<>/source/QSAR/classificationModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/source/QSAR/classificationModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/classificationValidation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/classificationValidation.C.o -MF CMakeFiles/BALL.dir/source/QSAR/classificationValidation.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/classificationValidation.C.o -c /<>/source/QSAR/classificationValidation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/classificationValidation.h:10, from /<>/source/QSAR/classificationValidation.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/configIO.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/configIO.C.o -MF CMakeFiles/BALL.dir/source/QSAR/configIO.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/configIO.C.o -c /<>/source/QSAR/configIO.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/modelFactory.h:13, from /<>/include/BALL/QSAR/registry.h:5, from /<>/source/QSAR/configIO.C:3: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:10, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/QSAR/configIO.h:9, from /<>/source/QSAR/configIO.C:1: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘static BALL::QSAR::ModelConfiguration BALL::QSAR::ConfigIO::readModelConfiguration(std::istream*)’ at /<>/source/QSAR/configIO.C:337:38: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/connectivityBase.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/connectivityBase.C.o -MF CMakeFiles/BALL.dir/source/QSAR/connectivityBase.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/connectivityBase.C.o -c /<>/source/QSAR/connectivityBase.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/include/BALL/QSAR/connectivityBase.h:14, from /<>/source/QSAR/connectivityBase.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/connectivityBase.C: In member function ‘virtual void BALL::ConnectivityBase::calculate_(BALL::AtomContainer&)’: /<>/source/QSAR/connectivityBase.C:109:45: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 109 | for (atom_it = ac.beginAtom(); atom_it != ac.endAtom(); ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/connectivityBase.C:121:45: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 121 | for (atom_it = ac.beginAtom(); atom_it != ac.endAtom(); ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/connectivityBase.C:135:40: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 135 | atom_it = ac.beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/connectivityBase.C:136:46: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 136 | bond_it = atom_it->beginBond(); | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/connectivityBase.C: In member function ‘virtual void BALL::ConnectivityBase::calculate_(BALL::AtomContainer&)’: /<>/source/QSAR/connectivityBase.C:136:46: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 136 | bond_it = atom_it->beginBond(); | ^ In file included from /<>/source/QSAR/connectivityBase.C:9: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/connectivityBase.C:138:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 138 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/connectivityBase.C:138:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 138 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/connectivityBase.C: In member function ‘void BALL::ConnectivityBase::recursion_(std::vector&, const BALL::Atom*, BALL::HashMap&)’: /<>/source/QSAR/connectivityBase.C:195:60: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 195 | for (bond_it = min_atom->beginBond(); bond_it != min_atom->endBond(); ++bond_it) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/QSAR/descriptor.h:10: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = std::less >]’ at /usr/include/c++/12/bits/stl_queue.h:748:13, inlined from ‘void BALL::ConnectivityBase::recursion_(std::vector&, const BALL::Atom*, BALL::HashMap&)’ at /<>/source/QSAR/connectivityBase.C:180:17: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void std::priority_queue<_Tp, _Sequence, _Compare>::push(value_type&&) [with _Tp = std::pair; _Sequence = std::vector, std::allocator > >; _Compare = std::less >]’ at /usr/include/c++/12/bits/stl_queue.h:748:13, inlined from ‘void BALL::ConnectivityBase::recursion_(std::vector&, const BALL::Atom*, BALL::HashMap&)’ at /<>/source/QSAR/connectivityBase.C:205:19: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/connectivityDescriptors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/connectivityDescriptors.C.o -MF CMakeFiles/BALL.dir/source/QSAR/connectivityDescriptors.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/connectivityDescriptors.C.o -c /<>/source/QSAR/connectivityDescriptors.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/include/BALL/QSAR/connectivityBase.h:14, from /<>/include/BALL/QSAR/connectivityDescriptors.h:10, from /<>/source/QSAR/connectivityDescriptors.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/QSAR/connectivityDescriptors.C:8: /<>/source/QSAR/connectivityDescriptors.C: In member function ‘virtual double BALL::ZagrebIndex::compute(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/connectivityDescriptors.C:50:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 50 | BALL_FOREACH_ATOM (ac, atom_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/connectivityDescriptors.C:56:67: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 56 | for (bond_it = atom_it->beginBond(); bond_it != atom_it->endBond(); bond_it++) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/connectivityDescriptors.C: In member function ‘virtual double BALL::ZagrebIndex::compute(BALL::AtomContainer&)’: /<>/source/QSAR/connectivityDescriptors.C:56:67: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 56 | for (bond_it = atom_it->beginBond(); bond_it != atom_it->endBond(); bond_it++) | ^ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/descriptor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/descriptor.C.o -MF CMakeFiles/BALL.dir/source/QSAR/descriptor.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/descriptor.C.o -c /<>/source/QSAR/descriptor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/source/QSAR/descriptor.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/exception.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/exception.C.o -MF CMakeFiles/BALL.dir/source/QSAR/exception.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/exception.C.o -c /<>/source/QSAR/exception.C [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kernel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/kernel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/kernel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/kernel.C.o -c /<>/source/QSAR/kernel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/kernel.h:10, from /<>/source/QSAR/kernel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kernelModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/kernelModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/kernelModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/kernelModel.C.o -c /<>/source/QSAR/kernelModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/source/QSAR/kernelModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/kernelModel.C: In member function ‘virtual void BALL::QSAR::KernelModel::calculateOffsets()’: /<>/source/QSAR/kernelModel.C:60:29: warning: unused variable ‘no_act’ [-Wunused-variable] 60 | int no_act = training_result_.cols(); | ^~~~~~ /<>/source/QSAR/kernelModel.C: In member function ‘virtual void BALL::QSAR::KernelModel::saveToFile(std::string)’: /<>/source/QSAR/kernelModel.C:99:30: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] 99 | bool sterr = 0; | ^~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/latentVariableModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/latentVariableModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/latentVariableModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/latentVariableModel.C.o -c /<>/source/QSAR/latentVariableModel.C [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/linearModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/linearModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/linearModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/linearModel.C.o -c /<>/source/QSAR/linearModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/source/QSAR/linearModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/logitModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/logitModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/logitModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/logitModel.C.o -c /<>/source/QSAR/logitModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/logitModel.h:10, from /<>/source/QSAR/logitModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/logitModel.C: In member function ‘virtual Eigen::VectorXd BALL::QSAR::LogitModel::predict(const std::vector&, bool)’: /<>/source/QSAR/logitModel.C:90:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 90 | for (unsigned int i = 0; i < res.rows(); i++) | ~~^~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void BALL::QSAR::LogitModel::readFromFile(std::string)’ at /<>/source/QSAR/logitModel.C:243:16: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/Model.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/Model.C.o -MF CMakeFiles/BALL.dir/source/QSAR/Model.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/Model.C.o -c /<>/source/QSAR/Model.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/source/QSAR/Model.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/Model.C: In member function ‘void BALL::QSAR::Model::readDescriptorInformation()’: /<>/source/QSAR/Model.C:182:50: warning: variable ‘y_transform’ set but not used [-Wunused-but-set-variable] 182 | bool transform = 0; bool y_transform = 0; | ^~~~~~~~~~~ /<>/source/QSAR/Model.C: In member function ‘Eigen::VectorXd BALL::QSAR::Model::getSubstanceVector(const Eigen::VectorXd&, bool)’: /<>/source/QSAR/Model.C:316:72: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 316 | if ( (data != NULL && data->getNoDescriptors() != substance.rows()) || (data == NULL && substance.rows() <= *(descriptor_IDs_.end()--)) ) | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/Model.C:316:130: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘const unsigned int’ [-Wsign-compare] 316 | if ( (data != NULL && data->getNoDescriptors() != substance.rows()) || (data == NULL && substance.rows() <= *(descriptor_IDs_.end()--)) ) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/Model.C: In member function ‘void BALL::QSAR::Model::readVector(Eigen::RowVectorXd&, std::ifstream&, unsigned int, bool)’: /<>/source/QSAR/Model.C:486:108: warning: unused parameter ‘column_vector’ [-Wunused-parameter] 486 | void Model::readVector(Eigen::RowVectorXd & vec, ifstream& in, unsigned int no_cells, bool column_vector) | ~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::QSAR::Model::readModelParametersFromFile(std::ifstream&)’ at /<>/source/QSAR/Model.C:509:16: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/modelFactory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/modelFactory.C.o -MF CMakeFiles/BALL.dir/source/QSAR/modelFactory.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/modelFactory.C.o -c /<>/source/QSAR/modelFactory.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/modelFactory.h:13, from /<>/source/QSAR/modelFactory.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/nBModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/nBModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/nBModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/nBModel.C.o -c /<>/source/QSAR/nBModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/bayesModel.h:10, from /<>/include/BALL/QSAR/nBModel.h:14, from /<>/source/QSAR/nBModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/nBModel.C: In member function ‘virtual void BALL::QSAR::NBModel::saveToFile(std::string)’: /<>/source/QSAR/nBModel.C:240:30: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] 240 | bool centered_y = 0; | ^~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/QSAR/common.h:4, from /<>/include/BALL/QSAR/nBModel.h:10: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual std::vector BALL::QSAR::NBModel::getParameters() const’ at /<>/source/QSAR/nBModel.C:161:15: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual std::vector BALL::QSAR::NBModel::getParameters() const’ at /<>/source/QSAR/nBModel.C:162:15: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/nonlinearModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/nonlinearModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/nonlinearModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/nonlinearModel.C.o -c /<>/source/QSAR/nonlinearModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/source/QSAR/nonlinearModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeBase.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/partialChargeBase.C.o -MF CMakeFiles/BALL.dir/source/QSAR/partialChargeBase.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/partialChargeBase.C.o -c /<>/source/QSAR/partialChargeBase.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/include/BALL/QSAR/partialChargeBase.h:10, from /<>/source/QSAR/partialChargeBase.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/partialChargeBase.C: In member function ‘virtual void BALL::PartialChargeBase::calculate_(BALL::AtomContainer&)’: /<>/source/QSAR/partialChargeBase.C:108:40: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (it = ac.beginAtom(); it != ac.endAtom(); ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/partialChargeBase.C: In member function ‘virtual void BALL::PartialChargeBase::calculate_(BALL::AtomContainer&)’: /<>/source/QSAR/partialChargeBase.C:108:40: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (it = ac.beginAtom(); it != ac.endAtom(); ++it) | ^ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeDescriptors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/partialChargeDescriptors.C.o -MF CMakeFiles/BALL.dir/source/QSAR/partialChargeDescriptors.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/partialChargeDescriptors.C.o -c /<>/source/QSAR/partialChargeDescriptors.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/include/BALL/QSAR/partialChargeBase.h:10, from /<>/include/BALL/QSAR/partialChargeDescriptors.h:11, from /<>/source/QSAR/partialChargeDescriptors.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/partialChargeProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/partialChargeProcessor.C.o -MF CMakeFiles/BALL.dir/source/QSAR/partialChargeProcessor.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/partialChargeProcessor.C.o -c /<>/source/QSAR/partialChargeProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/QSAR/partialChargeProcessor.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/KERNEL/bond.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/partialChargeProcessor.C: In member function ‘void BALL::PartialChargeProcessor::calculatePEOE(BALL::AtomContainer&)’: /<>/source/QSAR/partialChargeProcessor.C:85:48: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 85 | atom_it = ac.beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/partialChargeProcessor.C: In member function ‘void BALL::PartialChargeProcessor::calculatePEOE(BALL::AtomContainer&)’: /<>/source/QSAR/partialChargeProcessor.C:85:48: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 85 | atom_it = ac.beginAtom(); | ^ In file included from /<>/source/QSAR/partialChargeProcessor.C:12: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/partialChargeProcessor.C:88:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 88 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/partialChargeProcessor.C:88:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 88 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/partialChargeProcessor.C: In member function ‘void BALL::PartialChargeProcessor::calculatePEOE(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/partialChargeProcessor.C:88:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 88 | BALL_FOREACH_BOND (ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/QSARData.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/QSARData.C.o -MF CMakeFiles/BALL.dir/source/QSAR/QSARData.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/QSARData.C.o -c /<>/source/QSAR/QSARData.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/source/QSAR/QSARData.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readSDFile(const char*)’: /<>/source/QSAR/QSARData.C:77:67: warning: catching polymorphic type ‘class BALL::Exception::ParseError’ by value [-Wcatch-value=] 77 | catch(BALL::Exception::ParseError e) | ^ /<>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)’: /<>/source/QSAR/QSARData.C:201:67: warning: catching polymorphic type ‘class BALL::Exception::ParseError’ by value [-Wcatch-value=] 201 | catch(BALL::Exception::ParseError e) | ^ /<>/source/QSAR/QSARData.C:292:86: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 292 | catch(BALL::Exception::InvalidFormat g) | ^ /<>/source/QSAR/QSARData.C:313:94: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 313 | catch(BALL::Exception::InvalidFormat g) | ^ /<>/source/QSAR/QSARData.C:330:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 330 | for(int p=no_internal_descriptors; p>/source/QSAR/QSARData.C:332:72: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 332 | if(descriptor_matrix_[p].size()>/source/QSAR/QSARData.C:343:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 343 | for(int act=0; act>/source/QSAR/QSARData.C:345:58: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 345 | if(Y_[act].size()>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::multiset&, bool, bool, bool)’: /<>/source/QSAR/QSARData.C:399:67: warning: catching polymorphic type ‘class BALL::Exception::ParseError’ by value [-Wcatch-value=] 399 | catch(BALL::Exception::ParseError e) | ^ /<>/source/QSAR/QSARData.C:460:94: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 460 | catch(BALL::Exception::InvalidFormat g) | ^ /<>/source/QSAR/QSARData.C:488:94: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 488 | catch(BALL::Exception::InvalidFormat g) | ^ /<>/source/QSAR/QSARData.C: In member function ‘void BALL::QSAR::QSARData::readCSVFile(const char*, int, bool, bool, const char*, bool, bool)’: /<>/source/QSAR/QSARData.C:1097:86: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 1097 | catch(BALL::Exception::InvalidFormat g) | ^ /<>/source/QSAR/QSARData.C:1119:94: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 1119 | catch(BALL::Exception::InvalidFormat g) | ^ /<>/source/QSAR/QSARData.C: In member function ‘std::vector BALL::QSAR::QSARData::evenSplit(int, int, int) const’: /<>/source/QSAR/QSARData.C:1354:54: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 1354 | if (i%no_test_splits == current_test_split_id) | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/bits/stl_algo.h:60, from /usr/include/c++/12/algorithm:61, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/unordered/unordered_map.hpp:19, from /usr/include/boost/unordered_map.hpp:17, from /<>/include/BALL/DATATYPE/hashMap.h:24, from /<>/include/BALL/CONCEPT/persistenceManager.h:13, from /<>/include/BALL/CONCEPT/timeStamp.h:21, from /<>/include/BALL/CONCEPT/composite.h:41: /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1802 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1908 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::QSAR::QSARData::insertSubstance(const BALL::QSAR::QSARData*, int, bool)’ at /<>/source/QSAR/QSARData.C:1453:36: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::QSAR::QSARData::insertSubstance(const BALL::QSAR::QSARData*, int, bool)’ at /<>/source/QSAR/QSARData.C:1464:20: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, inlined from ‘void BALL::QSAR::QSARData::discretizeY(std::vector)’ at /<>/source/QSAR/QSARData.C:1192:8: /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1937 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1938 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1939 | __comp); | ~~~~~~~ In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, inlined from ‘void BALL::QSAR::QSARData::discretizeY(std::vector)’ at /<>/source/QSAR/QSARData.C:1192:8: /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1854 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::QSAR::QSARData::calculateTopologicalDescriptors(BALL::Molecule&, BALL::MolecularSimilarity&, const std::map&)’ at /<>/source/QSAR/QSARData.C:744:40: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::QSAR::QSARData::readCSVFile(const char*, int, bool, bool, const char*, bool, bool)’ at /<>/source/QSAR/QSARData.C:1095:40: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::QSAR::QSARData::readSDFile(const char*)’ at /<>/source/QSAR/QSARData.C:104:40: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::QSAR::QSARData::readSDFile(const char*)’ at /<>/source/QSAR/QSARData.C:110:20: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)’ at /<>/source/QSAR/QSARData.C:290:32: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)’ at /<>/source/QSAR/QSARData.C:334:38: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::set&, bool, bool, bool, bool, bool)’ at /<>/source/QSAR/QSARData.C:347:24: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::QSAR::QSARData::readSDFile(const char*, std::multiset&, bool, bool, bool)’ at /<>/source/QSAR/QSARData.C:457:42: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/registry.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/registry.C.o -MF CMakeFiles/BALL.dir/source/QSAR/registry.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/registry.C.o -c /<>/source/QSAR/registry.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/modelFactory.h:13, from /<>/include/BALL/QSAR/registry.h:5, from /<>/source/QSAR/registry.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/factory.h:9, from /<>/include/BALL/QSAR/modelFactory.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:52:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:57:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:63:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:71:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:72:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:81:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:82:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:89:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:90:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:96:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:103:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:109:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:130:34: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:138:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:139:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:146:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:147:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘BALL::QSAR::Registry::Registry()’ at /<>/source/QSAR/registry.C:148:35: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/regressionModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/regressionModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/regressionModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/regressionModel.C.o -c /<>/source/QSAR/regressionModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/source/QSAR/regressionModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘void BALL::QSAR::RegressionModel::show()’: /<>/source/QSAR/regressionModel.C:48:30: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] 48 | bool sterr = 0; | ^~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘virtual void BALL::QSAR::RegressionModel::saveToFile(std::string)’: /<>/source/QSAR/regressionModel.C:129:30: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] 129 | bool sterr = 0; | ^~~~~ /<>/source/QSAR/regressionModel.C: In member function ‘virtual void BALL::QSAR::RegressionModel::saveDescriptorInformationToFile(std::ofstream&)’: /<>/source/QSAR/regressionModel.C:259:73: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘std::multiset::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 259 | bool trained = (training_result_.rows() == descriptor_IDs_.size()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/regressionModel.C:285:73: warning: comparison of integer expressions of different signedness: ‘Eigen::Index’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 285 | bool trained = (training_result_.rows() == descriptor_names_.size()); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/regressionValidation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/regressionValidation.C.o -MF CMakeFiles/BALL.dir/source/QSAR/regressionValidation.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/regressionValidation.C.o -c /<>/source/QSAR/regressionValidation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/regressionValidation.h:11, from /<>/source/QSAR/regressionValidation.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/regressionValidation.C: In member function ‘virtual void BALL::QSAR::RegressionValidation::testInputData(bool)’: /<>/source/QSAR/regressionValidation.C:252:29: warning: variable ‘col’ set but not used [-Wunused-but-set-variable] 252 | int col = model_->data->descriptor_matrix_.size(); | ^~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/ringPerceptionProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/ringPerceptionProcessor.C.o -MF CMakeFiles/BALL.dir/source/QSAR/ringPerceptionProcessor.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/ringPerceptionProcessor.C.o -c /<>/source/QSAR/ringPerceptionProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /<>/source/QSAR/ringPerceptionProcessor.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/QSAR/ringPerceptionProcessor.C:8: /<>/source/QSAR/ringPerceptionProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::RingPerceptionProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/ringPerceptionProcessor.C:59:9: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 59 | BALL_FOREACH_ATOM(ac, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/ringPerceptionProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::RingPerceptionProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/ringPerceptionProcessor.C:59:9: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 59 | BALL_FOREACH_ATOM(ac, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/ringPerceptionProcessor.C:68:9: note: in expansion of macro ‘BALL_FOREACH_BOND’ 68 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/ringPerceptionProcessor.C:68:9: note: in expansion of macro ‘BALL_FOREACH_BOND’ 68 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/ringPerceptionProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::RingPerceptionProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/ringPerceptionProcessor.C:68:9: note: in expansion of macro ‘BALL_FOREACH_BOND’ 68 | BALL_FOREACH_BOND(ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/QSAR/ringPerceptionProcessor.h:15: /<>/include/BALL/STRUCTURE/simpleMolecularGraph.h: In instantiation of ‘BALL::TSimpleMolecularGraph::TSimpleMolecularGraph(const BALL::Molecule&) [with Node = int; Edge = int]’: /<>/source/QSAR/ringPerceptionProcessor.C:89:37: required from here /<>/include/BALL/STRUCTURE/simpleMolecularGraph.h:228:25: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 228 | for (ai = molecule.beginAtom(); +ai; ++ai) | ~~~^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/STRUCTURE/simpleMolecularGraph.h:230:33: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 230 | for (bi = ai->beginBond(); +bi; ++bi) | ~~~^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/simpleBase.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/simpleBase.C.o -MF CMakeFiles/BALL.dir/source/QSAR/simpleBase.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/simpleBase.C.o -c /<>/source/QSAR/simpleBase.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/include/BALL/QSAR/simpleBase.h:10, from /<>/source/QSAR/simpleBase.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/QSAR/simpleBase.C:8: /<>/source/QSAR/simpleBase.C: In member function ‘virtual void BALL::SimpleBase::calculate_(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/simpleBase.C:269:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 269 | BALL_FOREACH_BOND (ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/simpleBase.C:269:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 269 | BALL_FOREACH_BOND (ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/simpleBase.C: In member function ‘virtual void BALL::SimpleBase::calculate_(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/QSAR/simpleBase.C:269:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 269 | BALL_FOREACH_BOND (ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/simpleDescriptors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/simpleDescriptors.C.o -MF CMakeFiles/BALL.dir/source/QSAR/simpleDescriptors.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/simpleDescriptors.C.o -c /<>/source/QSAR/simpleDescriptors.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/include/BALL/QSAR/simpleBase.h:10, from /<>/include/BALL/QSAR/simpleDescriptors.h:10, from /<>/source/QSAR/simpleDescriptors.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/QSAR/simpleDescriptors.C:9: /<>/source/QSAR/simpleDescriptors.C: In member function ‘virtual double BALL::NumberOfHydrophobicAtoms::compute(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/simpleDescriptors.C:677:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 677 | BALL_FOREACH_ATOM (ac, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/simpleDescriptors.C: In member function ‘virtual double BALL::NumberOfHydrophobicAtoms::compute(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/simpleDescriptors.C:677:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 677 | BALL_FOREACH_ATOM (ac, a_it) | ^~~~~~~~~~~~~~~~~ /<>/source/QSAR/simpleDescriptors.C: In member function ‘virtual double BALL::NumberOfHydrogenBondDonors::compute(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/simpleDescriptors.C:746:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 746 | BALL_FOREACH_ATOM (ac, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/simpleDescriptors.C: In member function ‘virtual double BALL::NumberOfHydrogenBondAcceptors::compute(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/QSAR/simpleDescriptors.C:815:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 815 | BALL_FOREACH_ATOM (ac, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/snBModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/snBModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/snBModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/snBModel.C.o -c /<>/source/QSAR/snBModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/bayesModel.h:10, from /<>/include/BALL/QSAR/snBModel.h:18, from /<>/source/QSAR/snBModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/snBModel.C: In member function ‘virtual void BALL::QSAR::SNBModel::saveToFile(std::string)’: /<>/source/QSAR/snBModel.C:234:30: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] 234 | bool centered_y = 0; | ^~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/QSAR/common.h:4, from /<>/include/BALL/QSAR/snBModel.h:10: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual std::vector BALL::QSAR::SNBModel::getParameters() const’ at /<>/source/QSAR/snBModel.C:205:15: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual std::vector BALL::QSAR::SNBModel::getParameters() const’ at /<>/source/QSAR/snBModel.C:206:15: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::QSAR::SNBModel::train()’ at /<>/source/QSAR/snBModel.C:67:36: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/statistics.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/statistics.C.o -MF CMakeFiles/BALL.dir/source/QSAR/statistics.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/statistics.C.o -c /<>/source/QSAR/statistics.C /<>/source/QSAR/statistics.C: In static member function ‘static double BALL::QSAR::Statistics::calculateRankCorrelation(std::vector&, std::vector&)’: /<>/source/QSAR/statistics.C:169:63: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 169 | for(Size i=position; i>/source/QSAR/statistics.C:189:63: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 189 | for(Size i=position; i>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/surfaceBase.C.o -MF CMakeFiles/BALL.dir/source/QSAR/surfaceBase.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/surfaceBase.C.o -c /<>/source/QSAR/surfaceBase.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/include/BALL/QSAR/surfaceBase.h:10, from /<>/source/QSAR/surfaceBase.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/surfaceDescriptors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/surfaceDescriptors.C.o -MF CMakeFiles/BALL.dir/source/QSAR/surfaceDescriptors.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/surfaceDescriptors.C.o -c /<>/source/QSAR/surfaceDescriptors.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/descriptor.h:14, from /<>/include/BALL/QSAR/surfaceBase.h:10, from /<>/include/BALL/QSAR/surfaceDescriptors.h:10, from /<>/source/QSAR/surfaceDescriptors.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/svmModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/svmModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/svmModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/svmModel.C.o -c /<>/source/QSAR/svmModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/svmModel.h:10, from /<>/source/QSAR/svmModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/svrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/svrModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/svrModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/svrModel.C.o -c /<>/source/QSAR/svrModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/svrModel.h:10, from /<>/source/QSAR/svrModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/validation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/validation.C.o -MF CMakeFiles/BALL.dir/source/QSAR/validation.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/validation.C.o -c /<>/source/QSAR/validation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/source/QSAR/validation.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::QSAR::Validation::setTestLine(int, int, bool)’ at /<>/source/QSAR/validation.C:85:42: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/allModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/allModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/allModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/allModel.C.o -c /<>/source/QSAR/allModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/allModel.h:10, from /<>/source/QSAR/allModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/allModel.C: In member function ‘virtual void BALL::QSAR::ALLModel::saveToFile(std::string)’: /<>/source/QSAR/allModel.C:202:30: warning: variable ‘sterr’ set but not used [-Wunused-but-set-variable] 202 | bool sterr = 0; | ^~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual std::vector BALL::QSAR::ALLModel::getParameters() const’ at /<>/source/QSAR/allModel.C:191:15: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual std::vector BALL::QSAR::ALLModel::getParameters() const’ at /<>/source/QSAR/allModel.C:192:15: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/featureSelection.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/featureSelection.C.o -MF CMakeFiles/BALL.dir/source/QSAR/featureSelection.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/featureSelection.C.o -c /<>/source/QSAR/featureSelection.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/featureSelection.h:9, from /<>/source/QSAR/featureSelection.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/featureSelection.C: In member function ‘void BALL::QSAR::FeatureSelection::forward(bool, int, bool)’: /<>/source/QSAR/featureSelection.C:134:72: warning: catching polymorphic type ‘class BALL::QSAR::Exception::NoPCAVariance’ by value [-Wcatch-value=] 134 | catch(Exception::NoPCAVariance e) | ^ /<>/source/QSAR/featureSelection.C: In member function ‘void BALL::QSAR::FeatureSelection::backwardSelection(int, bool)’: /<>/source/QSAR/featureSelection.C:288:72: warning: catching polymorphic type ‘class BALL::QSAR::Exception::NoPCAVariance’ by value [-Wcatch-value=] 288 | catch(Exception::NoPCAVariance e) | ^ /<>/source/QSAR/featureSelection.C: In member function ‘void BALL::QSAR::FeatureSelection::twinScan(int, bool)’: /<>/source/QSAR/featureSelection.C:449:64: warning: catching polymorphic type ‘class BALL::QSAR::Exception::NoPCAVariance’ by value [-Wcatch-value=] 449 | catch(Exception::NoPCAVariance e) | ^ /<>/source/QSAR/featureSelection.C:456:87: warning: variable ‘it’ set but not used [-Wunused-but-set-variable] 456 | std::multiset< pair >::iterator it = potential_descriptors.insert(make_pair(1-model_->model_val->getCVRes(), i)); | ^~ /<>/source/QSAR/featureSelection.C:485:64: warning: catching polymorphic type ‘class BALL::QSAR::Exception::NoPCAVariance’ by value [-Wcatch-value=] 485 | catch(Exception::NoPCAVariance e) | ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/gpModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/gpModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/gpModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/gpModel.C.o -c /<>/source/QSAR/gpModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/gpModel.h:10, from /<>/source/QSAR/gpModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/gpModel.C: In member function ‘virtual double BALL::QSAR::GPModel::calculateStdErr()’: /<>/source/QSAR/gpModel.C:88:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 88 | for (unsigned int i = 1; i <= K_t_.cols(); i++) | ~~^~~~~~~~~~~~~~ /<>/source/QSAR/gpModel.C:90:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 90 | for (unsigned int j = 1; j <= K_t_.cols(); j++) | ~~^~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/knnModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/knnModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/knnModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/knnModel.C.o -c /<>/source/QSAR/knnModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/allModel.h:10, from /<>/include/BALL/QSAR/knnModel.h:10, from /<>/source/QSAR/knnModel.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual std::vector BALL::QSAR::KNNModel::getParameters() const’ at /<>/source/QSAR/knnModel.C:62:15: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kpcrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/kpcrModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/kpcrModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/kpcrModel.C.o -c /<>/source/QSAR/kpcrModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/kpcrModel.h:10, from /<>/source/QSAR/kpcrModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/kplsModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/kplsModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/kplsModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/kplsModel.C.o -c /<>/source/QSAR/kplsModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/nonlinearModel.h:10, from /<>/include/BALL/QSAR/kernelModel.h:10, from /<>/include/BALL/QSAR/kplsModel.h:10, from /<>/source/QSAR/kplsModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/ldaModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/ldaModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/ldaModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/ldaModel.C.o -c /<>/source/QSAR/ldaModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/classificationModel.h:10, from /<>/include/BALL/QSAR/ldaModel.h:10, from /<>/source/QSAR/ldaModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/ldaModel.C: In member function ‘virtual Eigen::VectorXd BALL::QSAR::LDAModel::predict(const std::vector&, bool)’: /<>/source/QSAR/ldaModel.C:123:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 123 | for (unsigned int i = 0; i < s.rows(); i++) | ~~^~~~~~~~~~ /<>/source/QSAR/ldaModel.C: In member function ‘virtual void BALL::QSAR::LDAModel::saveToFile(std::string)’: /<>/source/QSAR/ldaModel.C:169:30: warning: variable ‘centered_y’ set but not used [-Wunused-but-set-variable] 169 | bool centered_y = 0; | ^~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/mlrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/mlrModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/mlrModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/mlrModel.C.o -c /<>/source/QSAR/mlrModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/mlrModel.h:10, from /<>/source/QSAR/mlrModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/mlrModel.C: In member function ‘virtual void BALL::QSAR::MLRModel::train()’: /<>/source/QSAR/mlrModel.C:48:65: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] 48 | catch(BALL::Exception::GeneralException e) | ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/oplsModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/oplsModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/oplsModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/oplsModel.C.o -c /<>/source/QSAR/oplsModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/plsModel.h:10, from /<>/include/BALL/QSAR/oplsModel.h:10, from /<>/source/QSAR/oplsModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/oplsModel.C: In member function ‘virtual void BALL::QSAR::OPLSModel::train()’: /<>/source/QSAR/oplsModel.C:43:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 43 | for (unsigned int i = 1; i <= u.rows(); i++) | ~~^~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual std::vector BALL::QSAR::OPLSModel::getParameters() const’ at /<>/source/QSAR/oplsModel.C:216:15: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual std::vector BALL::QSAR::OPLSModel::getParameters() const’ at /<>/source/QSAR/oplsModel.C:217:15: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/pcrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/pcrModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/pcrModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/pcrModel.C.o -c /<>/source/QSAR/pcrModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/pcrModel.h:10, from /<>/source/QSAR/pcrModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/pcrModel.C: In static member function ‘static void BALL::QSAR::PCRModel::calculateEigenvectors(const Eigen::MatrixXd&, double, Eigen::MatrixXd&)’: /<>/source/QSAR/pcrModel.C:46:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 46 | for (; last_vector < svd.singularValues().rows() && cols < data.rows() && explained_var/complete_var < frac_var ; last_vector++) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/pcrModel.C:46:82: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 46 | for (; last_vector < svd.singularValues().rows() && cols < data.rows() && explained_var/complete_var < frac_var ; last_vector++) | ~~~~~^~~~~~~~~~~~~ /<>/source/QSAR/pcrModel.C:55:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 55 | for (unsigned int i = 0; i < data.rows(); i++) | ~~^~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/plsModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/plsModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/plsModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/plsModel.C.o -c /<>/source/QSAR/plsModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/plsModel.h:10, from /<>/source/QSAR/plsModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/SVD:36, from /usr/include/eigen3/Eigen/Dense:5, from /<>/source/QSAR/plsModel.C:8: /usr/include/eigen3/Eigen/src/SVD/SVDBase.h: In function ‘void Eigen::SVDBase::_solve_impl(const RhsType&, DstType&) const [with RhsType = Eigen::Transpose >; DstType = Eigen::Matrix; Derived = Eigen::JacobiSVD, 2>]’: /usr/include/eigen3/Eigen/src/SVD/SVDBase.h:308:6: note: parameter passing for argument of type ‘const Eigen::Transpose >’ changed in GCC 7.1 308 | void SVDBase::_solve_impl(const RhsType &rhs, DstType &dst) const | ^~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:323, from /<>/include/BALL/QSAR/statistics.h:15, from /<>/include/BALL/QSAR/QSARData.h:32: /usr/include/eigen3/Eigen/src/Core/Solve.h: In constructor ‘Eigen::internal::evaluator >::evaluator(const SolveType&) [with Decomposition = Eigen::SVDBase, 2> >; RhsType = Eigen::Transpose >]’: /usr/include/eigen3/Eigen/src/Core/Solve.h:127:28: note: parameter passing for argument of type ‘const Eigen::Transpose >’ changed in GCC 7.1 127 | solve.dec()._solve_impl(solve.rhs(), m_result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In constructor ‘Eigen::internal::evaluator >::evaluator(const SolveType&) [with Decomposition = Eigen::SVDBase, 2> >; RhsType = Eigen::Transpose >]’, inlined from ‘Eigen::internal::evaluator::evaluator(const T&) [with T = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:104:54, inlined from ‘Eigen::internal::unary_evaluator, Eigen::internal::IndexBased>::unary_evaluator(const XprType&) [with ArgType = const Eigen::Solve, 2> >, Eigen::Transpose > >; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = false]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:1106:7, inlined from ‘Eigen::internal::block_evaluator::block_evaluator(const XprType&) [with ArgType = const Eigen::Solve, 2> >, Eigen::Transpose > >; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = false]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:1094:37, inlined from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with ArgType = const Eigen::Solve, 2> >, Eigen::Transpose > >; int BlockRows = -1; int BlockCols = 1; bool InnerPanel = false]’ at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:1079:72, inlined from ‘void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::Block, 2> >, Eigen::Transpose > >, -1, 1, false>; Functor = assign_op]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:774:20, inlined from ‘static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix; SrcXprType = Eigen::Block, 2> >, Eigen::Transpose > >, -1, 1, false>; Functor = Eigen::internal::assign_op; Weak = void]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Block, 2> >, Eigen::Transpose > >, -1, 1, false>; Func = assign_op]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Block, 2> >, Eigen::Transpose > >, -1, 1, false>; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:797:41, inlined from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Block, 2> >, Eigen::Transpose > >, -1, 1, false>; OtherDerived = Eigen::Block, 2> >, Eigen::Transpose > >, -1, 1, false>; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:883:25, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Block, 2> >, Eigen::Transpose > >, -1, 1, false>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:332:31, inlined from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, true>; Lhs = Eigen::Matrix; Rhs = const Eigen::Block, 2> >, Eigen::Transpose > >, -1, 1, false>]’ at /usr/include/eigen3/Eigen/src/Core/ProductEvaluators.h:384:15, inlined from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h:479:24: /usr/include/eigen3/Eigen/src/Core/Solve.h:127:28: note: parameter passing for argument of type ‘const Eigen::Transpose >’ changed in GCC 7.1 127 | solve.dec()._solve_impl(solve.rhs(), m_result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::SVDBase, 2> >; RhsType = Eigen::Transpose >; Scalar = double]’, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 2> >, Eigen::Transpose > >; Func = assign_op]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 2> >, Eigen::Transpose > >; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:797:41, inlined from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Solve, 2> >, Eigen::Transpose > >; OtherDerived = Eigen::Solve, 2> >, Eigen::Transpose > >; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:883:25, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Solve, 2> >, Eigen::Transpose > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:332:31, inlined from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, 1, -1, false>; Lhs = const Eigen::Block, 1, -1, false>; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/ProductEvaluators.h:384:15, inlined from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:24: /usr/include/eigen3/Eigen/src/Core/Solve.h:147:26: note: parameter passing for argument of type ‘const Eigen::Transpose >’ changed in GCC 7.1 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In static member function ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::SVDBase, 2> >; RhsType = Eigen::Transpose >; Scalar = double]’, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 2> >, Eigen::Transpose > >; Func = assign_op]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 2> >, Eigen::Transpose > >; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:797:41, inlined from ‘Eigen::PlainObjectBase::PlainObjectBase(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 2> >, Eigen::Transpose > >; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:594:19, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase&) [with OtherDerived = Eigen::Solve, 2> >, Eigen::Transpose > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:423:29, inlined from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h:490:69: /usr/include/eigen3/Eigen/src/Core/Solve.h:147:26: note: parameter passing for argument of type ‘const Eigen::Transpose >’ changed in GCC 7.1 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ In static member function ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; DecType = Eigen::SVDBase, 2> >; RhsType = Eigen::Transpose >; Scalar = double]’, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Solve, 2> >, Eigen::Transpose > >; Func = assign_op]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Solve, 2> >, Eigen::Transpose > >; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:797:41, inlined from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Solve, 2> >, Eigen::Transpose > >; OtherDerived = Eigen::Solve, 2> >, Eigen::Transpose > >; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:883:25, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Solve, 2> >, Eigen::Transpose > >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:332:31, inlined from ‘Eigen::internal::product_evaluator, ProductTag, Eigen::DenseShape, Eigen::DenseShape>::product_evaluator(const XprType&) [with Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >; int ProductTag = 8]’ at /usr/include/eigen3/Eigen/src/Core/ProductEvaluators.h:501:7, inlined from ‘Eigen::internal::evaluator >::evaluator(const XprType&) [with Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >; int Options = 1]’ at /usr/include/eigen3/Eigen/src/Core/ProductEvaluators.h:35:90, inlined from ‘void Eigen::internal::call_restricted_packet_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 1>; Func = assign_op]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:904:22, inlined from ‘static void Eigen::internal::generic_product_impl::eval_dynamic_impl(Dst&, const LhsT&, const RhsT&, const Func&, const Scalar&, Eigen::internal::false_type) [with Dst = Eigen::Matrix; LhsT = Eigen::Matrix; RhsT = Eigen::Solve, 2> >, Eigen::Transpose > >; Func = Eigen::internal::assign_op; Scalar = double; Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/ProductEvaluators.h:462:47, inlined from ‘static void Eigen::internal::generic_product_impl::eval_dynamic(Dst&, const Lhs&, const Rhs&, const Func&) [with Dst = Eigen::Matrix; Func = Eigen::internal::assign_op; Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/ProductEvaluators.h:446:22, inlined from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h:441:32, inlined from ‘static void Eigen::internal::generic_product_impl::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >]’ at /usr/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h:432:15, inlined from ‘static void Eigen::internal::Assignment, Eigen::internal::assign_op, Eigen::internal::Dense2Dense, typename Eigen::internal::enable_if<((Options == Eigen::DefaultProduct) || (Options == Eigen::AliasFreeProduct))>::type>::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::Matrix; Lhs = Eigen::Matrix; Rhs = Eigen::Solve, 2> >, Eigen::Transpose > >; int Options = 0; Scalar = double]’ at /usr/include/eigen3/Eigen/src/Core/ProductEvaluators.h:148:43, inlined from ‘void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>; Func = assign_op]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from ‘Derived& Eigen::PlainObjectBase::_set_noalias(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:797:41, inlined from ‘void Eigen::PlainObjectBase::_init1(const Eigen::DenseBase&) [with T = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>; OtherDerived = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:883:25, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const T&) [with T = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:332:31, inlined from ‘void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if::value, void*>::type) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>; Func = assign_op]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:850:41, inlined from ‘void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix; Src = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>]’ at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:836:18, inlined from ‘Derived& Eigen::PlainObjectBase::_set(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>; Derived = Eigen::Matrix]’ at /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:779:32, inlined from ‘Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Product, Eigen::Solve, 2> >, Eigen::Transpose > >, 0>; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 0; int _MaxRows = -1; int _MaxCols = -1]’ at /usr/include/eigen3/Eigen/src/Core/Matrix.h:225:24, inlined from ‘virtual void BALL::QSAR::PLSModel::train()’ at /<>/source/QSAR/plsModel.C:107:138: /usr/include/eigen3/Eigen/src/Core/Solve.h:147:26: note: parameter passing for argument of type ‘Eigen::Transpose >’ changed in GCC 7.1 147 | src.dec()._solve_impl(src.rhs(), dst); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/QSAR/rrModel.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/QSAR/rrModel.C.o -MF CMakeFiles/BALL.dir/source/QSAR/rrModel.C.o.d -o CMakeFiles/BALL.dir/source/QSAR/rrModel.C.o -c /<>/source/QSAR/rrModel.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/QSAR/QSARData.h:10, from /<>/include/BALL/QSAR/validation.h:10, from /<>/include/BALL/QSAR/Model.h:10, from /<>/include/BALL/QSAR/regressionModel.h:9, from /<>/include/BALL/QSAR/linearModel.h:10, from /<>/include/BALL/QSAR/mlrModel.h:10, from /<>/include/BALL/QSAR/rrModel.h:10, from /<>/source/QSAR/rrModel.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/QSAR/rrModel.C: In member function ‘virtual void BALL::QSAR::RRModel::train()’: /<>/source/QSAR/rrModel.C:70:65: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] 70 | catch(BALL::Exception::GeneralException e) | ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/baseFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/baseFunction.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/baseFunction.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/baseFunction.C.o -c /<>/source/SCORING/COMMON/baseFunction.C [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/diffScoringFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/diffScoringFunction.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/diffScoringFunction.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/diffScoringFunction.C.o -c /<>/source/SCORING/COMMON/diffScoringFunction.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/source/SCORING/COMMON/diffScoringFunction.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/diffGridBasedScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/diffGridBasedScoring.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/diffGridBasedScoring.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/diffGridBasedScoring.C.o -c /<>/source/SCORING/COMMON/diffGridBasedScoring.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/source/SCORING/COMMON/diffGridBasedScoring.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/gridBasedScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/gridBasedScoring.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/gridBasedScoring.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/gridBasedScoring.C.o -c /<>/source/SCORING/COMMON/gridBasedScoring.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/source/SCORING/COMMON/gridBasedScoring.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::GridBasedScoring::GridSetsResult::setup(BALL::Size)’ at /<>/source/SCORING/COMMON/gridBasedScoring.C:874:23: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::GridBasedScoring::GridSetsResult::setup(BALL::Size)’ at /<>/source/SCORING/COMMON/gridBasedScoring.C:875:21: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/linearBaseFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/linearBaseFunction.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/linearBaseFunction.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/linearBaseFunction.C.o -c /<>/source/SCORING/COMMON/linearBaseFunction.C [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/fermiBaseFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/fermiBaseFunction.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/fermiBaseFunction.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/fermiBaseFunction.C.o -c /<>/source/SCORING/COMMON/fermiBaseFunction.C [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/rescorer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/rescorer.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/rescorer.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/rescorer.C.o -c /<>/source/SCORING/COMMON/rescorer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/include/BALL/FORMAT/PDBFile.h:25, from /<>/include/BALL/FORMAT/dockResultFile.h:9, from /<>/source/SCORING/COMMON/rescorer.C:2: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/FORMAT/PDBFile.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/DATATYPE/string.h:15, from /<>/include/BALL/SYSTEM/file.h:9, from /<>/include/BALL/FORMAT/molFileFactory.h:9, from /<>/source/SCORING/COMMON/rescorer.C:1: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/SCORING/COMMON/rescorer.C:8: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/source/SCORING/COMMON/rescorer.C: In static member function ‘static void BALL::Rescorer::processMultiMoleculeFile(BALL::ScoringFunction*, BALL::StructurePreparer*, BALL::String, BALL::Rescoring*, bool, double, BALL::String, BALL::GenericMolFile*, BALL::GenericMolFile*, double, bool)’: /<>/source/SCORING/COMMON/rescorer.C:390:66: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] 390 | catch (BALL::Exception::GeneralException e) | ^ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoreGridSet.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/scoreGridSet.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/scoreGridSet.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/scoreGridSet.C.o -c /<>/source/SCORING/COMMON/scoreGridSet.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/scoreGridSet.h:10, from /<>/source/SCORING/COMMON/scoreGridSet.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/SCORING/COMMON/scoreGridSet.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1667:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringComponent.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringComponent.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringComponent.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringComponent.C.o -c /<>/source/SCORING/COMMON/scoringComponent.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/source/SCORING/COMMON/scoringComponent.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringFunction.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringFunction.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringFunction.C.o -c /<>/source/SCORING/COMMON/scoringFunction.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/source/SCORING/COMMON/scoringFunction.C:4: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1667:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringOptimizer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringOptimizer.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringOptimizer.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMMON/scoringOptimizer.C.o -c /<>/source/SCORING/COMMON/scoringOptimizer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringOptimizer.h:9, from /<>/source/SCORING/COMMON/scoringOptimizer.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/CONCEPT/composite.h:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10, from /<>/source/SCORING/COMMON/scoringOptimizer.C:14: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/source/SCORING/COMMON/scoringOptimizer.C: In member function ‘void BALL::ScoringOptimizer::evaluate(double*, double*, double*, BALL::Size*)’: /<>/source/SCORING/COMMON/scoringOptimizer.C:187:57: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] 187 | catch(BALL::Exception::GeneralException e) | ^ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/aromaticRingStacking.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/aromaticRingStacking.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/aromaticRingStacking.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/aromaticRingStacking.C.o -c /<>/source/SCORING/COMPONENTS/aromaticRingStacking.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/aromaticityProcessor.h:10, from /<>/include/BALL/SCORING/COMPONENTS/aromaticRingStacking.h:9, from /<>/source/SCORING/COMPONENTS/aromaticRingStacking.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/advElectrostatic.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/advElectrostatic.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/advElectrostatic.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/advElectrostatic.C.o -c /<>/source/SCORING/COMPONENTS/advElectrostatic.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/include/BALL/SCORING/COMPONENTS/advElectrostatic.h:9, from /<>/source/SCORING/COMPONENTS/advElectrostatic.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fragmentationalSolvation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fragmentationalSolvation.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fragmentationalSolvation.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fragmentationalSolvation.C.o -c /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/include/BALL/SCORING/COMPONENTS/fragmentationalSolvation.h:9, from /<>/source/SCORING/COMPONENTS/fragmentationalSolvation.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1667:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/burialDepth.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/burialDepth.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/burialDepth.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/burialDepth.C.o -c /<>/source/SCORING/COMPONENTS/burialDepth.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/burialDepth.h:9, from /<>/source/SCORING/COMPONENTS/burialDepth.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/buriedPolar.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/buriedPolar.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/buriedPolar.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/buriedPolar.C.o -c /<>/source/SCORING/COMPONENTS/buriedPolar.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/buriedPolar.h:9, from /<>/source/SCORING/COMPONENTS/buriedPolar.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPI.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPI.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPI.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPI.C.o -c /<>/source/SCORING/COMPONENTS/CHPI.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/source/SCORING/COMPONENTS/CHPI.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/simpleBox3.h:15, from /<>/include/BALL/MOLMEC/COMMON/support.h:16: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPISlick.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPISlick.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPISlick.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/CHPISlick.C.o -c /<>/source/SCORING/COMPONENTS/CHPISlick.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceField.h:15, from /<>/include/BALL/MOLMEC/COMMON/support.h:20, from /<>/source/SCORING/COMPONENTS/CHPISlick.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/simpleBox3.h:15, from /<>/include/BALL/MOLMEC/COMMON/support.h:16: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/electrostatic.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/electrostatic.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/electrostatic.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/electrostatic.C.o -c /<>/source/SCORING/COMPONENTS/electrostatic.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/electrostatic.h:9, from /<>/source/SCORING/COMPONENTS/electrostatic.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fresnoTypes.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fresnoTypes.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fresnoTypes.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/fresnoTypes.C.o -c /<>/source/SCORING/COMPONENTS/fresnoTypes.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/fresnoTypes.h:9, from /<>/source/SCORING/COMPONENTS/fresnoTypes.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/SCORING/COMPONENTS/fresnoTypes.C:9: /<>/source/SCORING/COMPONENTS/fresnoTypes.C: In member function ‘virtual bool BALL::FresnoTypes::setup()’: /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/SCORING/COMPONENTS/fresnoTypes.C:310:41: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 310 | BALL_FOREACH_ATOM_BOND(*atom, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/fresnoTypes.C: In member function ‘virtual bool BALL::FresnoTypes::setup()’: /<>/include/BALL/KERNEL/forEach.h:77:49: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/SCORING/COMPONENTS/fresnoTypes.C:310:41: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 310 | BALL_FOREACH_ATOM_BOND(*atom, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/SCORING/COMPONENTS/fresnoTypes.C:365:49: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 365 | BALL_FOREACH_ATOM_BOND(*atom, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBond.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBond.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBond.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBond.C.o -c /<>/source/SCORING/COMPONENTS/hydrogenBond.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBond.h:9, from /<>/source/SCORING/COMPONENTS/hydrogenBond.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBondSlick.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBondSlick.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBondSlick.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/hydrogenBondSlick.C.o -c /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/hydrogenBondSlick.h:7, from /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:4: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C: In member function ‘virtual bool BALL::HydrogenBondSlick::setup()’: /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:147:70: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 147 | for (lig_it = lig->beginAtom(); +lig_it; ++lig_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:173:46: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 173 | for (lig_it = lig->beginAtom(); +lig_it; ++lig_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/hydrogenBondSlick.C:179:70: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 179 | for (rec_it = rec->beginAtom(); +rec_it; ++rec_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/lipophilic.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/lipophilic.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/lipophilic.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/lipophilic.C.o -c /<>/source/SCORING/COMPONENTS/lipophilic.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/lipophilic.h:9, from /<>/source/SCORING/COMPONENTS/lipophilic.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarity.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarity.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarity.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarity.C.o -c /<>/source/SCORING/COMPONENTS/polarity.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/polarity.h:9, from /<>/source/SCORING/COMPONENTS/polarity.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/SCORING/COMPONENTS/polarity.C:167:23: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PB.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PB.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PB.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PB.C.o -c /<>/source/SCORING/COMPONENTS/PB.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/PB.h:6, from /<>/source/SCORING/COMPONENTS/PB.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PLP.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PLP.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PLP.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/PLP.C.o -c /<>/source/SCORING/COMPONENTS/PLP.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:9, from /<>/source/SCORING/COMPONENTS/PLP.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:21: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:13: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMPONENTS/PLP.h:12: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/PLP.C: In member function ‘const BALL::PLP& BALL::PLP::operator=(const BALL::PLP&)’: /<>/source/SCORING/COMPONENTS/PLP.C:147:41: warning: implicitly-declared ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’ is deprecated [-Wdeprecated-copy] 147 | ForceFieldComponent::operator = (anb); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:61:17: note: because ‘BALL::ForceFieldComponent’ has user-provided ‘BALL::ForceFieldComponent::ForceFieldComponent(const BALL::ForceFieldComponent&)’ 61 | ForceFieldComponent(const ForceFieldComponent& force_field_component); | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h: In member function ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’: /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:34:27: warning: implicitly-declared ‘BALL::ScoringComponent& BALL::ScoringComponent::operator=(const BALL::ScoringComponent&)’ is deprecated [-Wdeprecated-copy] 34 | class BALL_EXPORT ForceFieldComponent : public ScoringComponent | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/SCORING/COMMON/scoringComponent.h:26:25: note: because ‘BALL::ScoringComponent’ has user-provided ‘BALL::ScoringComponent::ScoringComponent(const BALL::ScoringComponent&)’ 26 | ScoringComponent(const ScoringComponent& sc); | ^~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/PLP.C: In member function ‘const BALL::PLP& BALL::PLP::operator=(const BALL::PLP&)’: /<>/source/SCORING/COMPONENTS/PLP.C:147:41: note: synthesized method ‘BALL::ForceFieldComponent& BALL::ForceFieldComponent::operator=(const BALL::ForceFieldComponent&)’ first required here 147 | ForceFieldComponent::operator = (anb); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/rotationalEntropy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/rotationalEntropy.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/rotationalEntropy.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/rotationalEntropy.C.o -c /<>/source/SCORING/COMPONENTS/rotationalEntropy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/rotationalEntropy.h:9, from /<>/source/SCORING/COMPONENTS/rotationalEntropy.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/solvation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/solvation.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/solvation.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/solvation.C.o -c /<>/source/SCORING/COMPONENTS/solvation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMPONENTS/solvation.h:9, from /<>/source/SCORING/COMPONENTS/solvation.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/set:60, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:8: /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = BALL::String; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:761, from /usr/include/boost/functional/hash.hpp:6, from /usr/include/boost/unordered/unordered_map.hpp:18, from /usr/include/boost/unordered_map.hpp:17, from /<>/include/BALL/DATATYPE/hashMap.h:24, from /<>/include/BALL/CONCEPT/persistenceManager.h:13, from /<>/include/BALL/CONCEPT/timeStamp.h:21, from /<>/include/BALL/CONCEPT/composite.h:41: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:20:26: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:21:26: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:22:26: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:23:26: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:24:26: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:25:27: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:26:27: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:27:27: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:28:27: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:29:27: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:30:27: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:31:27: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:32:26: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:33:26: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:34:27: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:35:26: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:37:23: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:38:23: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:39:23: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:40:23: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:41:23: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:42:24: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:43:24: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:44:24: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:45:24: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:46:24: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:47:24: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:48:24: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:49:23: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:50:23: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:51:24: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = BALL::String; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘BALL::Solvation::Solvation(BALL::ScoringFunction&)’ at /<>/source/SCORING/COMPONENTS/solvation.C:52:23: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/nonpolarSolvation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/nonpolarSolvation.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/nonpolarSolvation.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/nonpolarSolvation.C.o -c /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/nonpolarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C: In member function ‘virtual double BALL::NonpolarSolvation::updateScore()’: /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:406:68: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 406 | src = getScoringFunction()->getLigand()->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:407:41: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 407 | dst = ligand_.beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C: In member function ‘virtual double BALL::NonpolarSolvation::updateScore()’: /<>/source/SCORING/COMPONENTS/nonpolarSolvation.C:407:41: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 407 | dst = ligand_.beginAtom(); | ^ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarSolvation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarSolvation.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarSolvation.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/polarSolvation.C.o -c /<>/source/SCORING/COMPONENTS/polarSolvation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/polarSolvation.h:6, from /<>/source/SCORING/COMPONENTS/polarSolvation.C:3: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C: In member function ‘virtual double BALL::PolarSolvation::updateScore()’: /<>/source/SCORING/COMPONENTS/polarSolvation.C:261:68: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 261 | src = getScoringFunction()->getLigand()->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:262:48: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 262 | dst = desolv_ligand_.beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C: In member function ‘virtual double BALL::PolarSolvation::updateScore()’: /<>/source/SCORING/COMPONENTS/polarSolvation.C:262:48: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 262 | dst = desolv_ligand_.beginAtom(); | ^ /<>/source/SCORING/COMPONENTS/polarSolvation.C:457:72: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 457 | it = desolv_protein_.beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C: In member function ‘bool BALL::PolarSolvation::computeFullCycle_(BALL::System&, BALL::Molecule&, BALL::Molecule&, float&)’: /<>/source/SCORING/COMPONENTS/polarSolvation.C:768:44: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 768 | for (it = ligand.beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:795:45: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 795 | for (it = protein.beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:832:44: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 832 | for (it = ligand.beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:851:44: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 851 | for (it = ligand.beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:874:45: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 874 | for (it = protein.beginAtom(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/polarSolvation.C:905:39: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 905 | it = system.beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaals.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaals.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaals.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaals.C.o -c /<>/source/SCORING/COMPONENTS/vanDerWaals.C In file included from /<>/include/BALL/KERNEL/moleculeIterator.h:11, from /<>/include/BALL/KERNEL/system.h:13, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/MOLMEC/COMMON/forceFieldComponent.h:24, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:23, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaals.h:9, from /<>/source/SCORING/COMPONENTS/vanDerWaals.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/FORMAT/parameterSection.h:13, from /<>/include/BALL/MOLMEC/PARAMETER/lennardJones.h:11, from /<>/include/BALL/MOLMEC/AMBER/amberNonBonded.h:15: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaalsSlick.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaalsSlick.C.o -MF CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaalsSlick.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/COMPONENTS/vanDerWaalsSlick.C.o -c /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/scoringComponent.h:11, from /<>/include/BALL/SCORING/COMPONENTS/vanDerWaalsSlick.h:7, from /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C: In member function ‘virtual double BALL::VanDerWaalsSlick::updateScore()’: /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:658:68: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 658 | src = getScoringFunction()->getLigand()->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:659:46: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 659 | dst = vdw_ligand_->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C: In member function ‘virtual double BALL::VanDerWaalsSlick::updateScore()’: /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:659:46: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 659 | dst = vdw_ligand_->beginAtom(); | ^ /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:683:47: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 683 | it = vdw_receptor_->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/COMPONENTS/vanDerWaalsSlick.C:697:45: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 697 | it = vdw_ligand_->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring.C.o -c /<>/source/SCORING/FUNCTIONS/rescoring.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::Rescoring::addScoreContributions(BALL::Molecule*)’ at /<>/source/SCORING/FUNCTIONS/rescoring.C:85:24: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::Rescoring::addScoreContributions(BALL::Molecule*)’ at /<>/source/SCORING/FUNCTIONS/rescoring.C:107:41: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual double BALL::Rescoring::rescore(BALL::Molecule*)’ at /<>/source/SCORING/FUNCTIONS/rescoring.C:355:35: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual double BALL::Rescoring::rescore(BALL::Molecule*)’ at /<>/source/SCORING/FUNCTIONS/rescoring.C:356:38: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring1D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring1D.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring1D.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring1D.C.o -c /<>/source/SCORING/FUNCTIONS/rescoring1D.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring1D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring1D.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::Rescoring1D::generateScoreContributions_(std::vector >*, std::vector*)’ at /<>/source/SCORING/FUNCTIONS/rescoring1D.C:59:36: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void BALL::Rescoring1D::generateScoreContributions_(std::vector >*, std::vector*)’ at /<>/source/SCORING/FUNCTIONS/rescoring1D.C:63:18: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring3D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring3D.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring3D.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring3D.C.o -c /<>/source/SCORING/FUNCTIONS/rescoring3D.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring3D.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SCORING/FUNCTIONS/rescoring3D.C: In member function ‘std::__cxx11::list*> > BALL::Rescoring3D::generateRegularData3DGrids()’: /<>/source/SCORING/FUNCTIONS/rescoring3D.C:112:30: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘Eigen::Index’ {aka ‘int’} [-Wsign-compare] 112 | if (sizeX_*sizeY_*sizeZ_ < coefficients->rows()) | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:13: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1667:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = BALL::Atom*; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:39:29, inlined from ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:35:6: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:42:56: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:39:29, inlined from ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:35:6, inlined from ‘virtual void BALL::Rescoring3D::generateScoreContributions_(BALL::Molecule*, std::vector >*, std::vector*)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:81:48: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:39:29, inlined from ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:35:6, inlined from ‘virtual void BALL::Rescoring3D::generateScoreContributions_(BALL::Molecule*, std::vector >*, std::vector*)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:86:52: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring3D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:42:56, inlined from ‘virtual void BALL::Rescoring3D::generateScoreContributions_(BALL::Molecule*, std::vector >*, std::vector*)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:86:52: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring3D::generateScoreContributions_(BALL::Molecule*, std::vector >*, std::vector*)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:92:53: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring3D::generateScoreContributions_(BALL::Molecule*, std::vector >*, std::vector*)’ at /<>/source/SCORING/FUNCTIONS/rescoring3D.C:96:37: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring4D.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring4D.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring4D.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/rescoring4D.C.o -c /<>/source/SCORING/FUNCTIONS/rescoring4D.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring3D.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/rescoring4D.h:9, from /<>/source/SCORING/FUNCTIONS/rescoring4D.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 523 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring4D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring4D.C:32:25: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void BALL::Rescoring4D::generateAtomScoreContributions_(const BALL::Atom*, std::vector&)’ at /<>/source/SCORING/FUNCTIONS/rescoring4D.C:35:55: /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1032 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/amberEvaluation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/amberEvaluation.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/amberEvaluation.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/amberEvaluation.C.o -c /<>/source/SCORING/FUNCTIONS/amberEvaluation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/amberEvaluation.h:13, from /<>/source/SCORING/FUNCTIONS/amberEvaluation.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/energeticEvaluation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/energeticEvaluation.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/energeticEvaluation.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/energeticEvaluation.C.o -c /<>/source/SCORING/FUNCTIONS/energeticEvaluation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/energeticEvaluation.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/forceFieldEvaluation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/forceFieldEvaluation.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/forceFieldEvaluation.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/forceFieldEvaluation.C.o -c /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /<>/include/BALL/SCORING/FUNCTIONS/energeticEvaluation.h:8, from /<>/include/BALL/SCORING/FUNCTIONS/forceFieldEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/forceFieldEvaluation.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedMM.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedMM.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedMM.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedMM.C.o -c /<>/source/SCORING/FUNCTIONS/gridedMM.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedMM.h:9, from /<>/source/SCORING/FUNCTIONS/gridedMM.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/MMScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/MMScoring.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/MMScoring.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/MMScoring.C.o -c /<>/source/SCORING/FUNCTIONS/MMScoring.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/diffScoringFunction.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/MMScoring.h:9, from /<>/source/SCORING/FUNCTIONS/MMScoring.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedPLP.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedPLP.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedPLP.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/gridedPLP.C.o -c /<>/source/SCORING/FUNCTIONS/gridedPLP.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/COMMON/gridBasedScoring.h:9, from /<>/include/BALL/SCORING/COMMON/diffGridBasedScoring.h:9, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:9, from /<>/source/SCORING/FUNCTIONS/gridedPLP.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/CONCEPT/composite.h:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PLPScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PLPScoring.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PLPScoring.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PLPScoring.C.o -c /<>/source/SCORING/FUNCTIONS/PLPScoring.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PLPScoring.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/CONCEPT/composite.h:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/PLPScoring.h:10: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/randomEvaluation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/randomEvaluation.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/randomEvaluation.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/randomEvaluation.C.o -c /<>/source/SCORING/FUNCTIONS/randomEvaluation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /<>/include/BALL/SCORING/FUNCTIONS/randomEvaluation.h:8, from /<>/source/SCORING/FUNCTIONS/randomEvaluation.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PBScoring.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PBScoring.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PBScoring.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/PBScoring.C.o -c /<>/source/SCORING/FUNCTIONS/PBScoring.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/PBScoring.h:9, from /<>/source/SCORING/FUNCTIONS/PBScoring.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickEnergy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickEnergy.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickEnergy.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickEnergy.C.o -c /<>/source/SCORING/FUNCTIONS/slickEnergy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/slickEnergy.h:11, from /<>/source/SCORING/FUNCTIONS/slickEnergy.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickScore.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickScore.C.o -MF CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickScore.C.o.d -o CMakeFiles/BALL.dir/source/SCORING/FUNCTIONS/slickScore.C.o -c /<>/source/SCORING/FUNCTIONS/slickScore.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/SCORING/FUNCTIONS/slickScore.h:11, from /<>/source/SCORING/FUNCTIONS/slickScore.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/claverieParameter.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/claverieParameter.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/claverieParameter.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/claverieParameter.C.o -c /<>/source/SOLVATION/claverieParameter.C [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/electrostaticPotentialCalculator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/electrostaticPotentialCalculator.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/electrostaticPotentialCalculator.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/electrostaticPotentialCalculator.C.o -c /<>/source/SOLVATION/electrostaticPotentialCalculator.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SOLVATION/electrostaticPotentialCalculator.h:11, from /<>/source/SOLVATION/electrostaticPotentialCalculator.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/electrostaticPotentialCalculator.C: In member function ‘float BALL::ElectrostaticPotentialCalculator::operator()(const BALL::Vector3&)’: /<>/source/SOLVATION/electrostaticPotentialCalculator.C:64:52: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atIt=mySys_.beginAtom();+atIt;++atIt) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/electrostaticPotentialCalculator.C: In member function ‘float BALL::ElectrostaticPotentialCalculator::operator()(const BALL::Vector3&)’: /<>/source/SOLVATION/electrostaticPotentialCalculator.C:64:52: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atIt=mySys_.beginAtom();+atIt;++atIt) | ^ /<>/source/SOLVATION/electrostaticPotentialCalculator.C:83:52: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 83 | for (atIt=mySys_.beginAtom();+atIt;++atIt) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/generalizedBornCase.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/generalizedBornCase.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/generalizedBornCase.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/generalizedBornCase.C.o -c /<>/source/SOLVATION/generalizedBornCase.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/SOLVATION/generalizedBornCase.h:19, from /<>/source/SOLVATION/generalizedBornCase.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/generalizedBornCase.C: In member function ‘bool BALL::GeneralizedBornModel::setup(const BALL::AtomContainer&)’: /<>/source/SOLVATION/generalizedBornCase.C:235:43: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 235 | for (it1 = ac_->beginAtom(); +it1; ++it1) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/molecularSurfaceGrid.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/molecularSurfaceGrid.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/molecularSurfaceGrid.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/molecularSurfaceGrid.C.o -c /<>/source/SOLVATION/molecularSurfaceGrid.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SOLVATION/molecularSurfaceGrid.h:19, from /<>/source/SOLVATION/molecularSurfaceGrid.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/SOLVATION/molecularSurfaceGrid.h:15: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/SOLVATION/molecularSurfaceGrid.C:8: /<>/source/SOLVATION/molecularSurfaceGrid.C: In function ‘BALL::TRegularData3D* BALL::calculateSESGrid(const Vector3&, const Vector3&, float, const System&, float)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/SOLVATION/molecularSurfaceGrid.C:165:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 165 | BALL_FOREACH_ATOM(system, atom_iterator) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/molecularSurfaceGrid.C: In function ‘BALL::TRegularData3D* BALL::calculateSASGrid(const Vector3&, const Vector3&, float, const System&, float)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/SOLVATION/molecularSurfaceGrid.C:358:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 358 | BALL_FOREACH_ATOM(system, atom_iterator) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/ooiEnergy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/ooiEnergy.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/ooiEnergy.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/ooiEnergy.C.o -c /<>/source/SOLVATION/ooiEnergy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/STRUCTURE/geometricProperties.h:25, from /<>/source/SOLVATION/ooiEnergy.C:13: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/expressionPredicate.h:11, from /<>/include/BALL/KERNEL/expressionTree.h:11, from /<>/include/BALL/KERNEL/expressionParser.h:9, from /<>/include/BALL/KERNEL/expression.h:13, from /<>/include/BALL/MOLMEC/COMMON/ruleEvaluator.h:17, from /<>/include/BALL/MOLMEC/COMMON/ruleProcessor.h:13, from /<>/include/BALL/MOLMEC/COMMON/typeRuleProcessor.h:13, from /<>/include/BALL/SOLVATION/ooiEnergy.h:15, from /<>/source/SOLVATION/ooiEnergy.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/ooiEnergy.C: In function ‘double BALL::calculateOoiEnergy(AtomContainer&)’: /<>/source/SOLVATION/ooiEnergy.C:277:48: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 277 | for (atom_it = atoms.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/ooiEnergy.C: In function ‘double BALL::calculateOoiEnergy(AtomContainer&)’: /<>/source/SOLVATION/ooiEnergy.C:277:48: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 277 | for (atom_it = atoms.beginAtom(); +atom_it; ++atom_it) | ^ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/PCMCavFreeEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/PCMCavFreeEnergyProcessor.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/PCMCavFreeEnergyProcessor.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/PCMCavFreeEnergyProcessor.C.o -c /<>/source/SOLVATION/PCMCavFreeEnergyProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/ENERGY/energyProcessor.h:15, from /<>/include/BALL/SOLVATION/PCMCavFreeEnergyProcessor.h:15, from /<>/source/SOLVATION/PCMCavFreeEnergyProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pierottiCavFreeEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/pierottiCavFreeEnergyProcessor.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/pierottiCavFreeEnergyProcessor.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/pierottiCavFreeEnergyProcessor.C.o -c /<>/source/SOLVATION/pierottiCavFreeEnergyProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/ENERGY/energyProcessor.h:15, from /<>/include/BALL/SOLVATION/pierottiCavFreeEnergyProcessor.h:15, from /<>/source/SOLVATION/pierottiCavFreeEnergyProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pair6_12InteractionEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/pair6_12InteractionEnergyProcessor.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/pair6_12InteractionEnergyProcessor.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/pair6_12InteractionEnergyProcessor.C.o -c /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/ENERGY/energyProcessor.h:15, from /<>/include/BALL/SOLVATION/pair6_12InteractionEnergyProcessor.h:23, from /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:14: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/surface.h:9, from /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C: In member function ‘virtual bool BALL::Pair6_12InteractionEnergyProcessor::finish()’: /<>/source/SOLVATION/pair6_12InteractionEnergyProcessor.C:406:69: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 406 | for (solute_iterator = fragment_->beginAtom(); +solute_iterator; | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pair6_12RDFIntegrator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/pair6_12RDFIntegrator.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/pair6_12RDFIntegrator.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/pair6_12RDFIntegrator.C.o -c /<>/source/SOLVATION/pair6_12RDFIntegrator.C [ 66%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pairExpInteractionEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/pairExpInteractionEnergyProcessor.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/pairExpInteractionEnergyProcessor.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/pairExpInteractionEnergyProcessor.C.o -c /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/ENERGY/energyProcessor.h:15, from /<>/include/BALL/SOLVATION/pairExpInteractionEnergyProcessor.h:27, from /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C:12: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/surface.h:9, from /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C:7: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C: In member function ‘virtual bool BALL::PairExpInteractionEnergyProcessor::finish()’: /<>/source/SOLVATION/pairExpInteractionEnergyProcessor.C:315:69: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 315 | for (solute_iterator = fragment_->beginAtom(); +solute_iterator; | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/pairExpRDFIntegrator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/pairExpRDFIntegrator.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/pairExpRDFIntegrator.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/pairExpRDFIntegrator.C.o -c /<>/source/SOLVATION/pairExpRDFIntegrator.C [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/poissonBoltzmann.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/poissonBoltzmann.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/poissonBoltzmann.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/poissonBoltzmann.C.o -c /<>/source/SOLVATION/poissonBoltzmann.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SOLVATION/poissonBoltzmann.h:21, from /<>/source/SOLVATION/poissonBoltzmann.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/regularData3D.h:9, from /<>/include/BALL/SOLVATION/poissonBoltzmann.h:17: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/SOLVATION/poissonBoltzmann.C:15: /<>/source/SOLVATION/poissonBoltzmann.C: In member function ‘bool BALL::FDPB::setupAtomArray(BALL::System&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/SOLVATION/poissonBoltzmann.C:267:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 267 | BALL_FOREACH_ATOM(system, atom_iterator) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/SOLVATION/poissonBoltzmann.C: In member function ‘bool BALL::FDPB::setupAtomArray(BALL::System&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/SOLVATION/poissonBoltzmann.C:267:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 267 | BALL_FOREACH_ATOM(system, atom_iterator) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/forwardIterator.h:9, from /<>/include/BALL/DATATYPE/hashSet.h:17, from /<>/include/BALL/CONCEPT/persistenceManager.h:21: /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:237:76: required from ‘BALL::ForwardIterator& BALL::ForwardIterator::operator=(const BALL::ForwardIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/source/SOLVATION/poissonBoltzmann.C:571:35: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3 >::BoxIteratorTraits& BALL::HashGridBox3 >::BoxIteratorTraits::operator=(const BALL::HashGridBox3 >::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /<>/source/SOLVATION/poissonBoltzmann.C:13: /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3 >::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = BALL::TVector4]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TVector4; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TVector4; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TVector4; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TVector4]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TVector4; BoxIterator = BALL::ForwardIterator >, BALL::HashGridBox3 >, unsigned int, BALL::HashGridBox3 >::BoxIteratorTraits>]’ /<>/source/SOLVATION/poissonBoltzmann.C:571:34: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/reissCavFreeEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/reissCavFreeEnergyProcessor.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/reissCavFreeEnergyProcessor.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/reissCavFreeEnergyProcessor.C.o -c /<>/source/SOLVATION/reissCavFreeEnergyProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/ENERGY/energyProcessor.h:15, from /<>/include/BALL/SOLVATION/reissCavFreeEnergyProcessor.h:15, from /<>/source/SOLVATION/reissCavFreeEnergyProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/solventDescriptor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/solventDescriptor.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/solventDescriptor.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/solventDescriptor.C.o -c /<>/source/SOLVATION/solventDescriptor.C [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/solventParameter.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/solventParameter.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/solventParameter.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/solventParameter.C.o -c /<>/source/SOLVATION/solventParameter.C [ 71%] Building CXX object CMakeFiles/BALL.dir/source/SOLVATION/uhligCavFreeEnergyProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SOLVATION/uhligCavFreeEnergyProcessor.C.o -MF CMakeFiles/BALL.dir/source/SOLVATION/uhligCavFreeEnergyProcessor.C.o.d -o CMakeFiles/BALL.dir/source/SOLVATION/uhligCavFreeEnergyProcessor.C.o -c /<>/source/SOLVATION/uhligCavFreeEnergyProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/ENERGY/energyProcessor.h:15, from /<>/include/BALL/SOLVATION/uhligCavFreeEnergyProcessor.h:15, from /<>/source/SOLVATION/uhligCavFreeEnergyProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C.o -c /<>/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/AStarBondOrderStrategy.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C.o -c /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:3: /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C: In member function ‘bool BALL::BondOrderAssignment::apply()’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:64:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 64 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C: In member function ‘bool BALL::BondOrderAssignment::apply()’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:64:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 64 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:64:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 64 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C: In member function ‘bool BALL::BondOrderAssignment::apply()’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:64:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 64 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:87:46: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 87 | a_it = ac->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:88:48: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 88 | b_it = a_it->beginBond(); | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignment.C:89:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 89 | BALL_FOREACH_ATOM(*ac, a_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C.o -c /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C.o -c /<>/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/branchAndBoundBondOrderStrategy.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C.o -c /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.h:13, from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual bool BALL::FPTBondOrderStrategy::readOptions(const BALL::Options&)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:30:63: warning: unused parameter ‘options’ [-Wunused-parameter] 30 | bool FPTBondOrderStrategy::readOptions(const Options& options) | ~~~~~~~~~~~~~~~^~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual void BALL::FPTBondOrderStrategy::init()’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:69:27: warning: unused variable ‘result’ [-Wunused-variable] 69 | Penalty result = bond_assignments[i]->compute(); | ^~~~~~ In file included from /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:3: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual boost::shared_ptr BALL::FPTBondOrderStrategy::computeNextSolution()’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:104:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 104 | BALL_FOREACH_BOND(*abop->getAtomContainer(), at_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual boost::shared_ptr BALL::FPTBondOrderStrategy::computeNextSolution()’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:104:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 104 | BALL_FOREACH_BOND(*abop->getAtomContainer(), at_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:104:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 104 | BALL_FOREACH_BOND(*abop->getAtomContainer(), at_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘virtual boost::shared_ptr BALL::FPTBondOrderStrategy::computeNextSolution()’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:104:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 104 | BALL_FOREACH_BOND(*abop->getAtomContainer(), at_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘void BALL::FPTBondOrderStrategy::FPTBondOrderAssignment_::computeJoinBag(BALL::FPTBondOrderStrategy::TreeDecompositionBag&, BALL::FPTBondOrderStrategy::DPTable_&, BALL::FPTBondOrderStrategy::DPTable_&, BALL::FPTBondOrderStrategy::AdditionalBagProperties_&)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:853:60: warning: implicitly-declared ‘BALL::FPTBondOrderStrategy::DPConfig_::DPConfig_(const BALL::FPTBondOrderStrategy::DPConfig_&)’ is deprecated [-Wdeprecated-copy] 853 | DPConfig_ config = *match->first; | ^~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:245:42: note: because ‘BALL::FPTBondOrderStrategy::DPConfig_’ has user-provided ‘BALL::FPTBondOrderStrategy::DPConfig_& BALL::FPTBondOrderStrategy::DPConfig_::operator=(const BALL::FPTBondOrderStrategy::DPConfig_&)’ 245 | FPTBondOrderStrategy::DPConfig_& FPTBondOrderStrategy::DPConfig_::operator = (DPConfig_ const& copy) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In copy constructor ‘BALL::FPTBondOrderStrategy::BackTrackingState_::BackTrackingState_(const BALL::FPTBondOrderStrategy::BackTrackingState_&)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1211:19: warning: implicitly-declared ‘BALL::FPTBondOrderStrategy::DPConfig_::DPConfig_(const BALL::FPTBondOrderStrategy::DPConfig_&)’ is deprecated [-Wdeprecated-copy] 1211 | config(other.config), | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:245:42: note: because ‘BALL::FPTBondOrderStrategy::DPConfig_’ has user-provided ‘BALL::FPTBondOrderStrategy::DPConfig_& BALL::FPTBondOrderStrategy::DPConfig_::operator=(const BALL::FPTBondOrderStrategy::DPConfig_&)’ 245 | FPTBondOrderStrategy::DPConfig_& FPTBondOrderStrategy::DPConfig_::operator = (DPConfig_ const& copy) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘void BALL::FPTBondOrderStrategy::DPBackTracking_::visitIntroduce(BALL::FPTBondOrderStrategy::BackTrackingState_&, TreeDecompositionBag&, BALL::FPTBondOrderStrategy::DPTable_&)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1525:55: warning: implicitly-declared ‘BALL::FPTBondOrderStrategy::DPConfig_::DPConfig_(const BALL::FPTBondOrderStrategy::DPConfig_&)’ is deprecated [-Wdeprecated-copy] 1525 | DPConfig_ antecessor = table.begin()->first; | ^~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:245:42: note: because ‘BALL::FPTBondOrderStrategy::DPConfig_’ has user-provided ‘BALL::FPTBondOrderStrategy::DPConfig_& BALL::FPTBondOrderStrategy::DPConfig_::operator=(const BALL::FPTBondOrderStrategy::DPConfig_&)’ 245 | FPTBondOrderStrategy::DPConfig_& FPTBondOrderStrategy::DPConfig_::operator = (DPConfig_ const& copy) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C: In member function ‘void BALL::FPTBondOrderStrategy::DPBackTracking_::visitForget(BALL::FPTBondOrderStrategy::BackTrackingState_&, TreeDecompositionBag&, BALL::FPTBondOrderStrategy::DPTable_&)’: /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:1722:40: warning: implicitly-declared ‘BALL::FPTBondOrderStrategy::DPConfig_::DPConfig_(const BALL::FPTBondOrderStrategy::DPConfig_&)’ is deprecated [-Wdeprecated-copy] 1722 | DPConfig_ test_entry = successor; | ^~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/FPTBondOrderStrategy.C:245:42: note: because ‘BALL::FPTBondOrderStrategy::DPConfig_’ has user-provided ‘BALL::FPTBondOrderStrategy::DPConfig_& BALL::FPTBondOrderStrategy::DPConfig_::operator=(const BALL::FPTBondOrderStrategy::DPConfig_&)’ 245 | FPTBondOrderStrategy::DPConfig_& FPTBondOrderStrategy::DPConfig_::operator = (DPConfig_ const& copy) | ^~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C.o -c /<>/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignment.h:13, from /<>/include/BALL/STRUCTURE/BONDORDERS/bondOrderAssignmentStrategy.h:5, from /<>/include/BALL/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.h:5, from /<>/source/STRUCTURE/BONDORDERS/KGreedyBondOrderStrategy.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C.o -c /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:13, from /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/BONDORDERS/partialBondOrderAssignment.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C: In member function ‘bool BALL::PartialBondOrderAssignment::estimatePenalty_(bool, HEURISTIC_INDEX)’: /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:226:53: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 226 | for (b_it = a_it->beginBond(); +b_it; b_it++) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C: In member function ‘bool BALL::PartialBondOrderAssignment::estimatePenalty_(bool, HEURISTIC_INDEX)’: /<>/source/STRUCTURE/BONDORDERS/partialBondOrderAssignment.C:226:53: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 226 | for (b_it = a_it->beginBond(); +b_it; b_it++) | ^ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/addHydrogenProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/addHydrogenProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/addHydrogenProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/addHydrogenProcessor.C.o -c /<>/source/STRUCTURE/addHydrogenProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/STRUCTURE/addHydrogenProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/STRUCTURE/addHydrogenProcessor.h:13, from /<>/source/STRUCTURE/addHydrogenProcessor.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/addHydrogenProcessor.h:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/source/STRUCTURE/addHydrogenProcessor.C:12: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/analyticalSES.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/analyticalSES.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/analyticalSES.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/analyticalSES.C.o -c /<>/source/STRUCTURE/analyticalSES.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/source/STRUCTURE/analyticalSES.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/STRUCTURE/analyticalSES.C:6: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/assignBondOrderProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/assignBondOrderProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/assignBondOrderProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/assignBondOrderProcessor.C.o -c /<>/source/STRUCTURE/assignBondOrderProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/kernel.h:16, from /<>/source/STRUCTURE/assignBondOrderProcessor.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/kernel.h:12: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::AssignBondOrderProcessor::operator()(BALL::AtomContainer&)’: /<>/source/STRUCTURE/assignBondOrderProcessor.C:594:93: warning: comparison of integer expressions of different signedness: ‘BALL::Size’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 594 | && ((getNumberOfComputedSolutions() < max_number_of_solutions_) || (!max_number_of_solutions_)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘bool BALL::AssignBondOrderProcessor::readAtomPenalties_()’: /<>/source/STRUCTURE/assignBondOrderProcessor.C:667:43: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 667 | for (unsigned int i= 0; i < entries.length(); i++) | ~~^~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C:705:68: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 705 | for (unsigned int k = 0; k < penalties.length(); k++) | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/kernel.h:28: /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘bool BALL::AssignBondOrderProcessor::precomputeBondLengthPenalties_()’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/assignBondOrderProcessor.C:774:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 774 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘bool BALL::AssignBondOrderProcessor::precomputeBondLengthPenalties_()’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/assignBondOrderProcessor.C:774:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 774 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/assignBondOrderProcessor.C:774:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 774 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘bool BALL::AssignBondOrderProcessor::precomputeBondLengthPenalties_()’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/assignBondOrderProcessor.C:774:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 774 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C:799:38: warning: variable ‘min_order’ set but not used [-Wunused-but-set-variable] 799 | Size min_order = 0; | ^~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘void BALL::AssignBondOrderProcessor::storeOriginalConfiguration_()’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/assignBondOrderProcessor.C:1187:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 1187 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/assignBondOrderProcessor.C:1187:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 1187 | BALL_FOREACH_BOND(*ac_, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/assignBondOrderProcessor.C: In member function ‘float BALL::AssignBondOrderProcessor::evaluatePenalty(BALL::AtomContainer*)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/assignBondOrderProcessor.C:1449:33: note: in expansion of macro ‘BALL_FOREACH_BOND’ 1449 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/assignBondOrderProcessor.C:1449:33: note: in expansion of macro ‘BALL_FOREACH_BOND’ 1449 | BALL_FOREACH_BOND(*ac, a_it, b_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/atomBijection.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/atomBijection.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/atomBijection.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/atomBijection.C.o -c /<>/source/STRUCTURE/atomBijection.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/STRUCTURE/atomBijection.h:13, from /<>/source/STRUCTURE/atomBijection.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/atomTyper.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/atomTyper.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/atomTyper.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/atomTyper.C.o -c /<>/source/STRUCTURE/atomTyper.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/STRUCTURE/atomTyper.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/STRUCTURE/atomTyper.C:7: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/binaryFingerprintMethods.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/binaryFingerprintMethods.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/binaryFingerprintMethods.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/binaryFingerprintMethods.C.o -c /<>/source/STRUCTURE/binaryFingerprintMethods.C /<>/source/STRUCTURE/binaryFingerprintMethods.C: In static member function ‘static bool BALL::BinaryFingerprintMethods::parseBinaryFingerprint(const BALL::String&, std::vector&, unsigned int, const char*)’: /<>/source/STRUCTURE/binaryFingerprintMethods.C:293:57: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 293 | catch (Exception::InvalidFormat e) | ^ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/bindingPocketProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/bindingPocketProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/bindingPocketProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/bindingPocketProcessor.C.o -c /<>/source/STRUCTURE/bindingPocketProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/STRUCTURE/bindingPocketProcessor.h:9, from /<>/source/STRUCTURE/bindingPocketProcessor.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/bindingPocketProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::BindingPocketProcessor::operator()(BALL::Composite&)’: /<>/source/STRUCTURE/bindingPocketProcessor.C:239:43: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 239 | ai = s->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/bindingPocketProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::BindingPocketProcessor::operator()(BALL::Composite&)’: /<>/source/STRUCTURE/bindingPocketProcessor.C:239:43: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 239 | ai = s->beginAtom(); | ^ /<>/source/STRUCTURE/bindingPocketProcessor.C:245:43: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 245 | ai = s->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/bindingPocketProcessor.C:251:43: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 251 | ai = s->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/STRUCTURE/bindingPocketProcessor.h:21: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::BindingPocketProcessor::Sphere_; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::BindingPocketProcessor::Sphere_; BALL::Position = unsigned int]’ /<>/source/STRUCTURE/bindingPocketProcessor.C:398:24: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/processor.h:9, from /<>/include/BALL/STRUCTURE/bindingPocketProcessor.h:5: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector, double> >::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual bool BALL::BindingPocketProcessor::finish()’ at /<>/source/STRUCTURE/bindingPocketProcessor.C:463:20: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, double>}; _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair, double>; _Alloc = std::allocator, double> >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual bool BALL::BindingPocketProcessor::finish()’ at /<>/source/STRUCTURE/bindingPocketProcessor.C:477:38: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, double>*, std::vector, double> > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/buildBondsProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/buildBondsProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/buildBondsProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/buildBondsProcessor.C.o -c /<>/source/STRUCTURE/buildBondsProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/STRUCTURE/buildBondsProcessor.h:13, from /<>/source/STRUCTURE/buildBondsProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/buildBondsProcessor.C:7: /<>/source/STRUCTURE/buildBondsProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::BuildBondsProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/buildBondsProcessor.C:90:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 90 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::BuildBondsProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/buildBondsProcessor.C:90:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 90 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C: In member function ‘BALL::Size BALL::BuildBondsProcessor::buildBondsHashGrid3_(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:90:55: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 90 | for (first_atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/buildBondsProcessor.C:129:25: note: in expansion of macro ‘BALL_FOREACH_ATOM_PAIR’ 129 | BALL_FOREACH_ATOM_PAIR(ac, ait1, ait2) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:92:58: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 92 | for (second_atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/buildBondsProcessor.C:129:25: note: in expansion of macro ‘BALL_FOREACH_ATOM_PAIR’ 129 | BALL_FOREACH_ATOM_PAIR(ac, ait1, ait2) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C: In member function ‘void BALL::BuildBondsProcessor::estimateBondOrders_(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/buildBondsProcessor.C:258:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 258 | BALL_FOREACH_BOND(ac, ait, bit) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/buildBondsProcessor.C:258:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 258 | BALL_FOREACH_BOND(ac, ait, bit) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C: In member function ‘void BALL::BuildBondsProcessor::estimateBondOrders_(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/buildBondsProcessor.C:258:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 258 | BALL_FOREACH_BOND(ac, ait, bit) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/buildBondsProcessor.C: In member function ‘void BALL::BuildBondsProcessor::deleteOverestimatedBonds_(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/buildBondsProcessor.C:333:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 333 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/buildBondsProcessor.C:8: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::Atom*; BALL::Position = unsigned int]’ /<>/source/STRUCTURE/buildBondsProcessor.C:165:19: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/connectedComponentsProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/connectedComponentsProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/connectedComponentsProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/connectedComponentsProcessor.C.o -c /<>/source/STRUCTURE/connectedComponentsProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/STRUCTURE/connectedComponentsProcessor.h:9, from /<>/source/STRUCTURE/connectedComponentsProcessor.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/connectedComponentsProcessor.C:5: /<>/source/STRUCTURE/connectedComponentsProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::ConnectedComponentsProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/connectedComponentsProcessor.C:50:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 50 | BALL_FOREACH_ATOM(ac, atom_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/connectedComponentsProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::ConnectedComponentsProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/connectedComponentsProcessor.C:50:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 50 | BALL_FOREACH_ATOM(ac, atom_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:141:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 141 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/connectedComponentsProcessor.C:66:17: note: in expansion of macro ‘BALL_FOREACH_INTRABOND’ 66 | BALL_FOREACH_INTRABOND(ac, atom_it, bond_iter) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:143:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 143 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/connectedComponentsProcessor.C:66:17: note: in expansion of macro ‘BALL_FOREACH_INTRABOND’ 66 | BALL_FOREACH_INTRABOND(ac, atom_it, bond_iter) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/connectedComponentsProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::ConnectedComponentsProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:143:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 143 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/connectedComponentsProcessor.C:66:17: note: in expansion of macro ‘BALL_FOREACH_INTRABOND’ 66 | BALL_FOREACH_INTRABOND(ac, atom_it, bond_iter) | ^~~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/connolly.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/connolly.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/connolly.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/connolly.C.o -c /<>/source/STRUCTURE/connolly.C [ 71%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/defaultProcessors.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/defaultProcessors.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/defaultProcessors.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/defaultProcessors.C.o -c /<>/source/STRUCTURE/defaultProcessors.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/source/STRUCTURE/defaultProcessors.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/defaultProcessors.h:13, from /<>/source/STRUCTURE/defaultProcessors.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/disulfidBondProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/disulfidBondProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/disulfidBondProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/disulfidBondProcessor.C.o -c /<>/source/STRUCTURE/disulfidBondProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/STRUCTURE/disulfidBondProcessor.h:9, from /<>/source/STRUCTURE/disulfidBondProcessor.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/disulfidBondProcessor.C:15: /<>/source/STRUCTURE/disulfidBondProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::DisulfidBondProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/disulfidBondProcessor.C:43:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 43 | BALL_FOREACH_BOND(ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/disulfidBondProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::DisulfidBondProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/disulfidBondProcessor.C:43:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 43 | BALL_FOREACH_BOND(ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/disulfidBondProcessor.C:43:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 43 | BALL_FOREACH_BOND(ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/disulfidBondProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::DisulfidBondProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/disulfidBondProcessor.C:43:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 43 | BALL_FOREACH_BOND(ac, atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/disulfidBondProcessor.C: In member function ‘bool BALL::DisulfidBondProcessor::connect(BALL::Atom*, BALL::Atom*, bool)’: /<>/source/STRUCTURE/disulfidBondProcessor.C:121:66: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 121 | b_it = atom2->beginBond(); | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/disulfidBondProcessor.C: In member function ‘bool BALL::DisulfidBondProcessor::connect(BALL::Residue*, BALL::Residue*, bool)’: /<>/source/STRUCTURE/disulfidBondProcessor.C:194:52: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 194 | a_it = residue2->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/disulfidBondProcessor.C: In member function ‘bool BALL::DisulfidBondProcessor::disconnect(BALL::Residue*, BALL::Residue*)’: /<>/source/STRUCTURE/disulfidBondProcessor.C:338:60: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 338 | a_it = residue2->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/DNAMutator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/DNAMutator.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/DNAMutator.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/DNAMutator.C.o -c /<>/source/STRUCTURE/DNAMutator.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/source/STRUCTURE/DNAMutator.C:11: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/STRUCTURE/DNAMutator.h:12, from /<>/source/STRUCTURE/DNAMutator.C:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/fragmentDB.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/fragmentDB.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/fragmentDB.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/fragmentDB.C.o -c /<>/source/STRUCTURE/fragmentDB.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/STRUCTURE/fragmentDB.h:13, from /<>/source/STRUCTURE/fragmentDB.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/fragmentDB.C: In member function ‘void BALL::FragmentDB::parseBonds_(BALL::ResourceEntry&, BALL::Fragment&)’: /<>/source/STRUCTURE/fragmentDB.C:306:67: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 306 | for (atom_it = fragment.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/fragmentDB.C: In member function ‘void BALL::FragmentDB::parseBonds_(BALL::ResourceEntry&, BALL::Fragment&)’: /<>/source/STRUCTURE/fragmentDB.C:306:67: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 306 | for (atom_it = fragment.beginAtom(); +atom_it; ++atom_it) | ^ /<>/source/STRUCTURE/fragmentDB.C: In member function ‘void BALL::FragmentDB::parseDelete_(BALL::ResourceEntry&, BALL::Fragment&)’: /<>/source/STRUCTURE/fragmentDB.C:385:67: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 385 | for (atom_it = fragment.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/fragmentDB.C: In member function ‘void BALL::FragmentDB::parseRename_(BALL::ResourceEntry&, BALL::Fragment&)’: /<>/source/STRUCTURE/fragmentDB.C:423:67: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 423 | for (atom_it = fragment.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/fragmentDB.C: In member function ‘void BALL::FragmentDB::NormalizeNamesProcessor::countHits_(BALL::HashMap*, int>&, const BALL::Fragment*, CountingMode)’: /<>/source/STRUCTURE/fragmentDB.C:1239:56: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 1239 | for (atom_it = frag->beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/fragmentDB.C: In member function ‘BALL::Size BALL::FragmentDB::BuildBondsProcessor::buildFragmentBonds(BALL::Fragment&, const BALL::Fragment&) const’: /<>/source/STRUCTURE/fragmentDB.C:1483:70: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 1483 | for (tplate_bond_it = tplate_atom->beginBond(); +tplate_bond_it; ++tplate_bond_it) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/fragmentDB.C: In member function ‘BALL::Size BALL::FragmentDB::BuildBondsProcessor::buildFragmentBonds(BALL::Fragment&, const BALL::Fragment&) const’: /<>/source/STRUCTURE/fragmentDB.C:1483:70: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 1483 | for (tplate_bond_it = tplate_atom->beginBond(); +tplate_bond_it; ++tplate_bond_it) | ^ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/geometricProperties.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/geometricProperties.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/geometricProperties.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/geometricProperties.C.o -c /<>/source/STRUCTURE/geometricProperties.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/STRUCTURE/geometricProperties.h:25, from /<>/source/STRUCTURE/geometricProperties.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/STRUCTURE/geometricProperties.h:13: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/geometricProperties.C: In member function ‘virtual bool BALL::FragmentDistanceCollector::finish()’: /<>/source/STRUCTURE/geometricProperties.C:199:74: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 199 | for (composite_it = reference_composite_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/geometricProperties.C:223:71: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 223 | for (atom_iterator2 = mol_fragment->beginAtom(); +atom_iterator2; ++ atom_iterator2) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/geometricProperties.C:238:87: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 238 | for (atom_iterator2 = mol_fragment->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/geometricTransformations.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/geometricTransformations.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/geometricTransformations.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/geometricTransformations.C.o -c /<>/source/STRUCTURE/geometricTransformations.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphEdge.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/graphEdge.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/graphEdge.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/graphEdge.C.o -c /<>/source/STRUCTURE/graphEdge.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphFace.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/graphFace.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/graphFace.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/graphFace.C.o -c /<>/source/STRUCTURE/graphFace.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/graphVertex.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/graphVertex.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/graphVertex.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/graphVertex.C.o -c /<>/source/STRUCTURE/graphVertex.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/HBondProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/HBondProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/HBondProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/HBondProcessor.C.o -c /<>/source/STRUCTURE/HBondProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/STRUCTURE/HBondProcessor.h:13, from /<>/source/STRUCTURE/HBondProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/HBondProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::HBondProcessor::operator()(BALL::Composite&)’: /<>/source/STRUCTURE/HBondProcessor.C:101:46: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 101 | ri = s->beginResidue(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/HBondProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::HBondProcessor::operator()(BALL::Composite&)’: /<>/source/STRUCTURE/HBondProcessor.C:101:46: note: synthesized method ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ first required here 101 | ri = s->beginResidue(); | ^ /<>/source/STRUCTURE/HBondProcessor.C:107:46: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 107 | ri = s->beginResidue(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/HBondProcessor.C:113:46: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>& BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 113 | ri = s->beginResidue(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::ResidueIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Residue; Position = BALL::BidirectionalIterator; Traits = BALL::ResidueIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/HBondProcessor.C:8: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/HBondProcessor.C:129:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 129 | BALL_FOREACH_BOND(*ri_del, ai, bi) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/HBondProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::HBondProcessor::operator()(BALL::Composite&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/HBondProcessor.C:129:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 129 | BALL_FOREACH_BOND(*ri_del, ai, bi) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/HBondProcessor.C:129:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 129 | BALL_FOREACH_BOND(*ri_del, ai, bi) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/HBondProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::HBondProcessor::operator()(BALL::Composite&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/HBondProcessor.C:129:25: note: in expansion of macro ‘BALL_FOREACH_BOND’ 129 | BALL_FOREACH_BOND(*ri_del, ai, bi) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/HBondProcessor.C: In member function ‘bool BALL::HBondProcessor::finishWishartEtAl_()’: /<>/source/STRUCTURE/HBondProcessor.C:525:76: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 525 | for (bi = acceptors_[a]->beginBond(); +bi; ++bi) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/HBondProcessor.C:533:73: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 533 | for (bi = donors_[d]->beginBond(); +bi; ++bi) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/HBondProcessor.C:6: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::HBondProcessor::ResidueData*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::HBondProcessor::ResidueData*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::HBondProcessor::ResidueData*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::HBondProcessor::ResidueData*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::HBondProcessor::ResidueData*; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/HBondProcessor.C:350:67: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/hybridisationProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/hybridisationProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/hybridisationProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/hybridisationProcessor.C.o -c /<>/source/STRUCTURE/hybridisationProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/STRUCTURE/hybridisationProcessor.h:13, from /<>/source/STRUCTURE/hybridisationProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C: In member function ‘double BALL::HybridisationProcessor::AverageBondAngle_(BALL::Atom*)’: /<>/source/STRUCTURE/hybridisationProcessor.C:112:43: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 112 | for (b_it1 = a->beginBond(); +b_it1; ++b_it1) | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C: In member function ‘double BALL::HybridisationProcessor::AverageBondAngle_(BALL::Atom*)’: /<>/source/STRUCTURE/hybridisationProcessor.C:112:43: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 112 | for (b_it1 = a->beginBond(); +b_it1; ++b_it1) | ^ /<>/source/STRUCTURE/hybridisationProcessor.C:114:33: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 114 | b_it2 = b_it1; | ^~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/hybridisationProcessor.C:7: /<>/source/STRUCTURE/hybridisationProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::HybridisationProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/hybridisationProcessor.C:147:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 147 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::HybridisationProcessor::operator()(BALL::AtomContainer&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/hybridisationProcessor.C:147:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 147 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:217:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 217 | for (ait = ac.beginAtom(); +ait; ++ait) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:365:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 365 | for (ait = ac.beginAtom(); +ait; ++ait) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/hybridisationProcessor.C:371:68: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 371 | for (b_it = ait->beginBond(); +b_it; ++b_it) | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/hybridisationProcessor.C:410:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 410 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/hybridisationProcessor.C:418:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 418 | BALL_FOREACH_ATOM(ac, ait) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/kekulizer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/kekulizer.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/kekulizer.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/kekulizer.C.o -c /<>/source/STRUCTURE/kekulizer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/STRUCTURE/kekulizer.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/KERNEL/bond.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/kekulizer.C:7: /<>/source/STRUCTURE/kekulizer.C: In member function ‘bool BALL::Kekuliser::setup(BALL::Molecule&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/kekulizer.C:197:9: note: in expansion of macro ‘BALL_FOREACH_BOND’ 197 | BALL_FOREACH_BOND(mol, ait, bit) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/kekulizer.C: In member function ‘bool BALL::Kekuliser::setup(BALL::Molecule&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/kekulizer.C:197:9: note: in expansion of macro ‘BALL_FOREACH_BOND’ 197 | BALL_FOREACH_BOND(mol, ait, bit) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/kekulizer.C:197:9: note: in expansion of macro ‘BALL_FOREACH_BOND’ 197 | BALL_FOREACH_BOND(mol, ait, bit) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/kekulizer.C: In member function ‘bool BALL::Kekuliser::setup(BALL::Molecule&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/kekulizer.C:197:9: note: in expansion of macro ‘BALL_FOREACH_BOND’ 197 | BALL_FOREACH_BOND(mol, ait, bit) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/kekulizer.C: In member function ‘bool BALL::Kekuliser::fixAromaticRings_()’: /<>/source/STRUCTURE/kekulizer.C:374:46: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 374 | bit = atom.beginBond(); | ^ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/kekulizer.C: In member function ‘void BALL::Kekuliser::collectAromaticAtoms_()’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/kekulizer.C:587:9: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 587 | BALL_FOREACH_ATOM(*molecule_, ait) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/kekulizer.C:5: In copy constructor ‘BALL::Kekuliser::AtomInfo::AtomInfo(const BALL::Kekuliser::AtomInfo&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = BALL::Kekuliser::AtomInfo; _Args = {const BALL::Kekuliser::AtomInfo&}; _Tp = BALL::Kekuliser::AtomInfo]’ at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = BALL::Kekuliser::AtomInfo; _Args = {const BALL::Kekuliser::AtomInfo&}; _Tp = BALL::Kekuliser::AtomInfo]’ at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::Kekuliser::AtomInfo; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from ‘bool BALL::Kekuliser::fixAromaticRings_()’ at /<>/source/STRUCTURE/kekulizer.C:350:25: /<>/include/BALL/STRUCTURE/kekulizer.h:40:36: warning: ‘temp_ai.BALL::Kekuliser::AtomInfo::atom’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct BALL_EXPORT AtomInfo | ^~~~~~~~ /<>/source/STRUCTURE/kekulizer.C: In member function ‘bool BALL::Kekuliser::fixAromaticRings_()’: /<>/source/STRUCTURE/kekulizer.C:283:18: note: ‘temp_ai’ declared here 283 | AtomInfo temp_ai; | ^~~~~~~ In copy constructor ‘BALL::Kekuliser::AtomInfo::AtomInfo(const BALL::Kekuliser::AtomInfo&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = BALL::Kekuliser::AtomInfo; _Args = {const BALL::Kekuliser::AtomInfo&}; _Tp = BALL::Kekuliser::AtomInfo]’ at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = BALL::Kekuliser::AtomInfo; _Args = {const BALL::Kekuliser::AtomInfo&}; _Tp = BALL::Kekuliser::AtomInfo]’ at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::Kekuliser::AtomInfo; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from ‘bool BALL::Kekuliser::fixAromaticRings_()’ at /<>/source/STRUCTURE/kekulizer.C:350:25: /<>/include/BALL/STRUCTURE/kekulizer.h:40:36: warning: ‘temp_ai.BALL::Kekuliser::AtomInfo::min_double’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct BALL_EXPORT AtomInfo | ^~~~~~~~ /<>/source/STRUCTURE/kekulizer.C: In member function ‘bool BALL::Kekuliser::fixAromaticRings_()’: /<>/source/STRUCTURE/kekulizer.C:283:18: note: ‘temp_ai’ declared here 283 | AtomInfo temp_ai; | ^~~~~~~ In copy constructor ‘BALL::Kekuliser::AtomInfo::AtomInfo(const BALL::Kekuliser::AtomInfo&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = BALL::Kekuliser::AtomInfo; _Args = {const BALL::Kekuliser::AtomInfo&}; _Tp = BALL::Kekuliser::AtomInfo]’ at /usr/include/c++/12/bits/new_allocator.h:175:4, inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = BALL::Kekuliser::AtomInfo; _Args = {const BALL::Kekuliser::AtomInfo&}; _Tp = BALL::Kekuliser::AtomInfo]’ at /usr/include/c++/12/bits/alloc_traits.h:516:17, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::Kekuliser::AtomInfo; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1281:30, inlined from ‘bool BALL::Kekuliser::fixAromaticRings_()’ at /<>/source/STRUCTURE/kekulizer.C:350:25: /<>/include/BALL/STRUCTURE/kekulizer.h:40:36: warning: ‘temp_ai.BALL::Kekuliser::AtomInfo::max_double’ may be used uninitialized [-Wmaybe-uninitialized] 40 | struct BALL_EXPORT AtomInfo | ^~~~~~~~ /<>/source/STRUCTURE/kekulizer.C: In member function ‘bool BALL::Kekuliser::fixAromaticRings_()’: /<>/source/STRUCTURE/kekulizer.C:283:18: note: ‘temp_ai’ declared here 283 | AtomInfo temp_ai; | ^~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/molecularSimilarity.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/molecularSimilarity.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/molecularSimilarity.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/molecularSimilarity.C.o -c /<>/source/STRUCTURE/molecularSimilarity.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/STRUCTURE/molecularSimilarity.h:22, from /<>/source/STRUCTURE/molecularSimilarity.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/molecularSimilarity.C: In member function ‘void BALL::MolecularSimilarity::generateFingerprint(BALL::Molecule&, std::vector&)’: /<>/source/STRUCTURE/molecularSimilarity.C:405:40: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] 405 | catch(BALL::Exception::GeneralException) | ^~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/mutator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/mutator.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/mutator.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/mutator.C.o -c /<>/source/STRUCTURE/mutator.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/STRUCTURE/fragmentDB.h:13, from /<>/source/STRUCTURE/mutator.C:3: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/nucleotideMapping.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/nucleotideMapping.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/nucleotideMapping.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/nucleotideMapping.C.o -c /<>/source/STRUCTURE/nucleotideMapping.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/source/STRUCTURE/nucleotideMapping.C:4: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/numericalSAS.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/numericalSAS.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/numericalSAS.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/numericalSAS.C.o -c /<>/source/STRUCTURE/numericalSAS.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/STRUCTURE/geometricProperties.h:25, from /<>/source/STRUCTURE/numericalSAS.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/STRUCTURE/numericalSAS.h:13, from /<>/source/STRUCTURE/numericalSAS.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/numericalSAS.C:10: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = const BALL::Atom*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = const BALL::Atom*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = const BALL::Atom*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = const BALL::Atom*; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/numericalSAS.C:150:72: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptides.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/peptides.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/peptides.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/peptides.C.o -c /<>/source/STRUCTURE/peptides.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/STRUCTURE/peptides.h:13, from /<>/source/STRUCTURE/peptides.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptideBuilder.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/peptideBuilder.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/peptideBuilder.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/peptideBuilder.C.o -c /<>/source/STRUCTURE/peptideBuilder.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/STRUCTURE/peptides.h:13, from /<>/include/BALL/STRUCTURE/peptideBuilder.h:9, from /<>/source/STRUCTURE/peptideBuilder.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/peptideBuilder.C: In member function ‘BALL::PDBAtom* BALL::Peptides::PeptideBuilder::getAtomByName_(BALL::Residue&, const BALL::String&)’: /<>/source/STRUCTURE/peptideBuilder.C:616:52: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 616 | for (ai = res.beginPDBAtom(); +ai; ++ai) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::PDBAtom; Position = BALL::BidirectionalIterator; Traits = BALL::PDBAtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::PDBAtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::PDBAtom; Position = BALL::BidirectionalIterator; Traits = BALL::PDBAtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/peptideBuilder.C: In member function ‘BALL::PDBAtom* BALL::Peptides::PeptideBuilder::getAtomByName_(BALL::Residue&, const BALL::String&)’: /<>/source/STRUCTURE/peptideBuilder.C:616:52: note: synthesized method ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’ first required here 616 | for (ai = res.beginPDBAtom(); +ai; ++ai) | ^ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/peptideCapProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/peptideCapProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/peptideCapProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/peptideCapProcessor.C.o -c /<>/source/STRUCTURE/peptideCapProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/STRUCTURE/peptideCapProcessor.h:21, from /<>/source/STRUCTURE/peptideCapProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/STRUCTURE/peptideCapProcessor.h:13: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/peptideCapProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::PeptideCapProcessor::operator()(BALL::Chain&)’: /<>/source/STRUCTURE/peptideCapProcessor.C:211:65: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 211 | n_atom = chain.getResidue(0)->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/peptideCapProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::PeptideCapProcessor::operator()(BALL::Chain&)’: /<>/source/STRUCTURE/peptideCapProcessor.C:211:65: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 211 | n_atom = chain.getResidue(0)->beginAtom(); | ^ /<>/source/STRUCTURE/peptideCapProcessor.C:239:65: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 239 | n_atom = chain.getResidue(1)->beginAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/radialDistributionFunction.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/radialDistributionFunction.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/radialDistributionFunction.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/radialDistributionFunction.C.o -c /<>/source/STRUCTURE/radialDistributionFunction.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/reconstructFragmentProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/reconstructFragmentProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/reconstructFragmentProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/reconstructFragmentProcessor.C.o -c /<>/source/STRUCTURE/reconstructFragmentProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/STRUCTURE/reconstructFragmentProcessor.h:23, from /<>/source/STRUCTURE/reconstructFragmentProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/matrix44.h:23, from /<>/include/BALL/STRUCTURE/reconstructFragmentProcessor.h:19: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/reconstructFragmentProcessor.C: In static member function ‘static BALL::Triple BALL::ReconstructFragmentProcessor::getTwoReferenceAtoms(const BALL::Atom&, const BALL::HashSet&)’: /<>/source/STRUCTURE/reconstructFragmentProcessor.C:77:76: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | bond = (*current)->endBond(); | ^ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/reconstructFragmentProcessor.C: In static member function ‘static BALL::Triple BALL::ReconstructFragmentProcessor::getTwoReferenceAtoms(const BALL::Atom&, const BALL::HashSet&)’: /<>/source/STRUCTURE/reconstructFragmentProcessor.C:77:76: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 77 | bond = (*current)->endBond(); | ^ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFIntegrator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/RDFIntegrator.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/RDFIntegrator.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/RDFIntegrator.C.o -c /<>/source/STRUCTURE/RDFIntegrator.C [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFParameter.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/RDFParameter.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/RDFParameter.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/RDFParameter.C.o -c /<>/source/STRUCTURE/RDFParameter.C In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/RDFParameter.h:9, from /<>/source/STRUCTURE/RDFParameter.C:5: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::RadialDistributionFunction&}; _Tp = BALL::RadialDistributionFunction; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::RadialDistributionFunction; _Alloc = std::allocator]’, inlined from ‘virtual bool BALL::RDFParameter::extractSection(BALL::ForceFieldParameters&, const BALL::String&)’ at /<>/source/STRUCTURE/RDFParameter.C:186:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RDFSection.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/RDFSection.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/RDFSection.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/RDFSection.C.o -c /<>/source/STRUCTURE/RDFSection.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/reducedSurface.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/reducedSurface.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/reducedSurface.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/reducedSurface.C.o -c /<>/source/STRUCTURE/reducedSurface.C In file included from /<>/include/BALL/CONCEPT/forwardIterator.h:9, from /<>/include/BALL/DATATYPE/hashSet.h:17, from /<>/include/BALL/CONCEPT/persistenceManager.h:21, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/simpleBox3.h:15, from /<>/include/BALL/STRUCTURE/reducedSurface.h:13, from /<>/source/STRUCTURE/reducedSurface.C:5: /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/source/STRUCTURE/reducedSurface.C:1883:27: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/reducedSurface.C:8: /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = unsigned int]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/reducedSurface.C:1883:26: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/residueChecker.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/residueChecker.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/residueChecker.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/residueChecker.C.o -c /<>/source/STRUCTURE/residueChecker.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/STRUCTURE/residueChecker.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/STRUCTURE/residueChecker.h:21, from /<>/source/STRUCTURE/residueChecker.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueChecker.C: In member function ‘bool BALL::ResidueChecker::checkCompleteness(const BALL::Residue&, const BALL::Residue&, const BALL::String&)’: /<>/source/STRUCTURE/residueChecker.C:218:52: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 218 | for (atom_it = reference.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueChecker.C:224:50: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 224 | for (atom_it = residue.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueChecker.C: In member function ‘bool BALL::ResidueChecker::checkAtomPositions(const BALL::Residue&, const BALL::String&)’: /<>/source/STRUCTURE/residueChecker.C:278:46: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 278 | for (atom_it = res.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueChecker.C:298:41: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 298 | for (atom_it2 = atom_it, ++atom_it2; +atom_it2; ++atom_it2) | ^~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/residueChecker.C:7: /<>/source/STRUCTURE/residueChecker.C: In member function ‘bool BALL::ResidueChecker::checkTemplate(const BALL::Residue&, const BALL::Residue&, const BALL::String&)’: /<>/include/BALL/KERNEL/forEach.h:108:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 108 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/residueChecker.C:393:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 393 | BALL_FOREACH_BOND(reference, bond_atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:110:51: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/residueChecker.C:393:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 393 | BALL_FOREACH_BOND(reference, bond_atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueChecker.C: In member function ‘bool BALL::ResidueChecker::checkTemplate(const BALL::Residue&, const BALL::Residue&, const BALL::String&)’: /<>/include/BALL/KERNEL/forEach.h:110:51: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 110 | for (bond_iterator = (*atom_iterator).beginBond(); \ | ^ /<>/source/STRUCTURE/residueChecker.C:393:17: note: in expansion of macro ‘BALL_FOREACH_BOND’ 393 | BALL_FOREACH_BOND(reference, bond_atom_it, bond_it) | ^~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueChecker.C:397:58: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 397 | for (atom_it = residue.beginAtom(); +atom_it && (first == 0 || second == 0); ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/rGroupAssembler.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/rGroupAssembler.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/rGroupAssembler.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/rGroupAssembler.C.o -c /<>/source/STRUCTURE/rGroupAssembler.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/STRUCTURE/rGroupAssembler.C:2: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/KERNEL/bond.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/ringAnalyser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/ringAnalyser.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/ringAnalyser.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/ringAnalyser.C.o -c /<>/source/STRUCTURE/ringAnalyser.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/STRUCTURE/ringAnalyser.h:13, from /<>/source/STRUCTURE/ringAnalyser.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSEdge.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/RSEdge.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/RSEdge.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/RSEdge.C.o -c /<>/source/STRUCTURE/RSEdge.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSFace.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/RSFace.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/RSFace.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/RSFace.C.o -c /<>/source/STRUCTURE/RSFace.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RSVertex.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/RSVertex.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/RSVertex.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/RSVertex.C.o -c /<>/source/STRUCTURE/RSVertex.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASEdge.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/SASEdge.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/SASEdge.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/SASEdge.C.o -c /<>/source/STRUCTURE/SASEdge.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASFace.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/SASFace.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/SASFace.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/SASFace.C.o -c /<>/source/STRUCTURE/SASFace.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SASVertex.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/SASVertex.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/SASVertex.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/SASVertex.C.o -c /<>/source/STRUCTURE/SASVertex.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/sdGenerator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/sdGenerator.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/sdGenerator.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/sdGenerator.C.o -c /<>/source/STRUCTURE/sdGenerator.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/STRUCTURE/ringAnalyser.h:13, from /<>/include/BALL/STRUCTURE/sdGenerator.h:13, from /<>/source/STRUCTURE/sdGenerator.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/STRUCTURE/sdGenerator.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/sdGenerator.C:15: /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::prepare_()’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:56:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 56 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::prepare_()’: /<>/include/BALL/KERNEL/forEach.h:64:49: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:56:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 56 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:89:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 89 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:117:41: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 117 | BALL_FOREACH_ATOM_BOND(*at_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/KERNEL/atom.h:17, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: warning: implicitly-declared ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:47:29: note: because ‘BALL::ConstRandomAccessIterator’ has user-provided ‘BALL::ConstRandomAccessIterator::ConstRandomAccessIterator(const BALL::ConstRandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 47 | BALL_INLINE ConstRandomAccessIterator(const ConstRandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:24:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 24 | class ConstRandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h: In member function ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’: /<>/include/BALL/CONCEPT/randomAccessIterator.h:413:15: note: synthesized method ‘BALL::ConstRandomAccessIterator& BALL::ConstRandomAccessIterator::operator=(const BALL::ConstRandomAccessIterator&)’ first required here 413 | class RandomAccessIterator | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::prepare_()’: /<>/include/BALL/KERNEL/forEach.h:77:49: note: synthesized method ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ first required here 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:117:41: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 117 | BALL_FOREACH_ATOM_BOND(*at_it, bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:143:49: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 143 | BALL_FOREACH_ATOM_BOND(*partner, next_bond_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::clear()’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:199:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 199 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::generateSD(BALL::System&)’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:252:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 252 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::computeShelleyPriorities_()’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:311:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 311 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:318:25: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 318 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:324:33: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 324 | BALL_FOREACH_ATOM_BOND(*at_it, b_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:337:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 337 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::treatChains_()’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:992:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 992 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:1103:25: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 1103 | BALL_FOREACH_ATOM_BOND(*first_atom, b_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:1116:25: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 1116 | BALL_FOREACH_ATOM_BOND(*first_atom, b_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘BALL::Angle BALL::SDGenerator::computeAngularSeparation_(BALL::Atom*)’: /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:1139:17: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 1139 | BALL_FOREACH_ATOM_BOND(*seed, b_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘std::vector BALL::SDGenerator::sequenceSubstituents_(BALL::Atom*)’: /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:1235:17: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 1235 | BALL_FOREACH_ATOM_BOND(*seed, b_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:1353:41: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 1353 | BALL_FOREACH_ATOM_BOND(*seed, b_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sdGenerator.C: In member function ‘void BALL::SDGenerator::assembleSD_()’: /<>/include/BALL/KERNEL/forEach.h:64:49: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 64 | for (atom_iterator = (atom_container).beginAtom(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:1608:17: note: in expansion of macro ‘BALL_FOREACH_ATOM’ 1608 | BALL_FOREACH_ATOM(*system_, at_it) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/forEach.h:77:49: warning: implicitly-declared ‘BALL::RandomAccessIterator& BALL::RandomAccessIterator::operator=(const BALL::RandomAccessIterator&)’ is deprecated [-Wdeprecated-copy] 77 | for (bond_iterator = (bond_container).beginBond(); \ | ^ /<>/source/STRUCTURE/sdGenerator.C:1730:33: note: in expansion of macro ‘BALL_FOREACH_ATOM_BOND’ 1730 | BALL_FOREACH_ATOM_BOND(*seed_atom, b_it) | ^~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/randomAccessIterator.h:437:29: note: because ‘BALL::RandomAccessIterator’ has user-provided ‘BALL::RandomAccessIterator::RandomAccessIterator(const BALL::RandomAccessIterator&) [with Container = BALL::Atom; DataType = BALL::Bond; Position = int; Traits = BALL::Atom::BondIteratorTraits]’ 437 | BALL_INLINE RandomAccessIterator(const RandomAccessIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESEdge.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/SESEdge.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/SESEdge.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/SESEdge.C.o -c /<>/source/STRUCTURE/SESEdge.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESFace.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/SESFace.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/SESFace.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/SESFace.C.o -c /<>/source/STRUCTURE/SESFace.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/SESVertex.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/SESVertex.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/SESVertex.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/SESVertex.C.o -c /<>/source/STRUCTURE/SESVertex.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/secondaryStructureProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/secondaryStructureProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/secondaryStructureProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/secondaryStructureProcessor.C.o -c /<>/source/STRUCTURE/secondaryStructureProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/STRUCTURE/HBondProcessor.h:13, from /<>/source/STRUCTURE/secondaryStructureProcessor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/STRUCTURE/secondaryStructureProcessor.h:13, from /<>/source/STRUCTURE/secondaryStructureProcessor.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/sideChainPlacementProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/sideChainPlacementProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/sideChainPlacementProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/sideChainPlacementProcessor.C.o -c /<>/source/STRUCTURE/sideChainPlacementProcessor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/kernel.h:16, from /<>/source/STRUCTURE/sideChainPlacementProcessor.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/kernel.h:12: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sideChainPlacementProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::SideChainPlacementProcessor::operator()(BALL::AtomContainer&)’: /<>/source/STRUCTURE/sideChainPlacementProcessor.C:362:108: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 362 | for ( at_it_scwrled=res_it_scwrled->beginPDBAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::PDBAtom; Position = BALL::BidirectionalIterator; Traits = BALL::PDBAtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::PDBAtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::PDBAtom; Position = BALL::BidirectionalIterator; Traits = BALL::PDBAtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/sideChainPlacementProcessor.C: In member function ‘virtual BALL::Processor::Result BALL::SideChainPlacementProcessor::operator()(BALL::AtomContainer&)’: /<>/source/STRUCTURE/sideChainPlacementProcessor.C:362:108: note: synthesized method ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’ first required here 362 | for ( at_it_scwrled=res_it_scwrled->beginPDBAtom(); | ^ /<>/source/STRUCTURE/sideChainPlacementProcessor.C:393:102: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>& BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 393 | for ( at_it_ori = to_mutate[j].first->beginPDBAtom(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::PDBAtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::PDBAtom; Position = BALL::BidirectionalIterator; Traits = BALL::PDBAtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smilesParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/smilesParser.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/smilesParser.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/smilesParser.C.o -c /<>/source/STRUCTURE/smilesParser.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/smilesParser.h:17, from /<>/source/STRUCTURE/smilesParser.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/smilesParser.h:13: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/smartsParser.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/smartsParser.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/smartsParser.C.o -c /<>/source/STRUCTURE/smartsParser.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/STRUCTURE/smartsParser.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/STRUCTURE/smartsParser.C:6: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsMatcher.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/smartsMatcher.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/smartsMatcher.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/smartsMatcher.C.o -c /<>/source/STRUCTURE/smartsMatcher.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/QSAR/ringPerceptionProcessor.h:11, from /<>/source/STRUCTURE/smartsMatcher.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/solventAccessibleSurface.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/solventAccessibleSurface.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/solventAccessibleSurface.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/solventAccessibleSurface.C.o -c /<>/source/STRUCTURE/solventAccessibleSurface.C [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/solventExcludedSurface.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/solventExcludedSurface.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/solventExcludedSurface.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/solventExcludedSurface.C.o -c /<>/source/STRUCTURE/solventExcludedSurface.C In file included from /<>/include/BALL/CONCEPT/forwardIterator.h:9, from /<>/include/BALL/DATATYPE/hashSet.h:17, from /<>/include/BALL/CONCEPT/persistenceManager.h:21, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/circle3.h:15, from /<>/include/BALL/STRUCTURE/RSEdge.h:17, from /<>/include/BALL/STRUCTURE/SESEdge.h:13, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9, from /<>/source/STRUCTURE/solventExcludedSurface.C:5: /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/source/STRUCTURE/solventExcludedSurface.C:1587:27: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:45: /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = int]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/source/STRUCTURE/solventExcludedSurface.C:2156:27: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = unsigned int]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = int; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/solventExcludedSurface.C:1587:26: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/solventExcludedSurface.C:2156:26: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/structureMapper.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/structureMapper.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/structureMapper.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/structureMapper.C.o -c /<>/source/STRUCTURE/structureMapper.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/STRUCTURE/structureMapper.h:25, from /<>/source/STRUCTURE/structureMapper.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/geometricTransformations.h:13, from /<>/include/BALL/STRUCTURE/structureMapper.h:17: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/structureMapper.C: In member function ‘BALL::Size BALL::StructureMapper::countFragments_(const BALL::AtomContainer&) const’: /<>/source/STRUCTURE/structureMapper.C:54:49: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomContainerIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomContainerIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomContainerIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 54 | for (it = ac.beginAtomContainer(); +it; ++it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomContainerIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::AtomContainer; Position = BALL::BidirectionalIterator; Traits = BALL::AtomContainerIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/structureMapper.C: In static member function ‘static BALL::Matrix4x4 BALL::StructureMapper::matchBackboneAtoms(const BALL::Residue&, const BALL::Residue&)’: /<>/source/STRUCTURE/structureMapper.C:425:45: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 425 | for (atom_it = r1.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/structureMapper.C:448:45: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 448 | for (atom_it = r2.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/structureMapper.C: In member function ‘std::vector >& BALL::StructureMapper::searchPattern(std::vector&, BALL::AtomContainer&, double, double, double, double)’: /<>/source/STRUCTURE/structureMapper.C:556:56: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 556 | for (ac_it = ac.beginAtomContainer(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::AtomContainer; Position = BALL::BidirectionalIterator; Traits = BALL::AtomContainerIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomContainerIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomContainerIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomContainerIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomContainerIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::AtomContainer; Position = BALL::BidirectionalIterator; Traits = BALL::AtomContainerIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/structureMapper.C: In member function ‘std::vector >& BALL::StructureMapper::searchPattern(std::vector&, BALL::AtomContainer&, double, double, double, double)’: /<>/source/STRUCTURE/structureMapper.C:556:56: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomContainerIteratorTraits>&)’ first required here 556 | for (ac_it = ac.beginAtomContainer(); | ^ /<>/source/STRUCTURE/structureMapper.C: In member function ‘BALL::Matrix4x4 BALL::StructureMapper::mapProteins(BALL::Protein&, BALL::Protein&, std::map&, BALL::Size&, double&, double, double, double)’: /<>/source/STRUCTURE/structureMapper.C:713:44: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 713 | for(atom_it = P1.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/structureMapper.C: In member function ‘BALL::Matrix4x4 BALL::StructureMapper::mapProteins(BALL::Protein&, BALL::Protein&, std::map&, BALL::Size&, double&, double, double, double)’: /<>/source/STRUCTURE/structureMapper.C:713:44: note: synthesized method ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ first required here 713 | for(atom_it = P1.beginAtom(); +atom_it; ++atom_it) | ^ /<>/source/STRUCTURE/structureMapper.C:740:44: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>& BALL::BidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 740 | for(atom_it = P2.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/forwardIterator.h:9, from /<>/include/BALL/CONCEPT/bidirectionalIterator.h:9: /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:237:76: required from ‘BALL::ForwardIterator& BALL::ForwardIterator::operator=(const BALL::ForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/source/STRUCTURE/structureMapper.C:774:34: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /<>/source/STRUCTURE/structureMapper.C:9: /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = unsigned int]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:237:76: required from ‘BALL::ForwardIterator& BALL::ForwardIterator::operator=(const BALL::ForwardIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/source/STRUCTURE/structureMapper.C:865:40: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3 >::BoxIteratorTraits& BALL::HashGridBox3 >::BoxIteratorTraits::operator=(const BALL::HashGridBox3 >::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3 >::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = BALL::TVector3]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/structureMapper.C:774:33: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TVector3; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TVector3; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TVector3; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TVector3]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TVector3; BoxIterator = BALL::ForwardIterator >, BALL::HashGridBox3 >, unsigned int, BALL::HashGridBox3 >::BoxIteratorTraits>]’ /<>/source/STRUCTURE/structureMapper.C:865:39: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] [ 80%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/surfaceProcessor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/surfaceProcessor.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/surfaceProcessor.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/surfaceProcessor.C.o -c /<>/source/STRUCTURE/surfaceProcessor.C In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:45, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:15, from /<>/source/STRUCTURE/surfaceProcessor.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1667:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = int; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:10, from /<>/include/BALL/MATHS/common.h:29, from /<>/include/BALL/STRUCTURE/reducedSurface.h:9, from /<>/include/BALL/STRUCTURE/surfaceProcessor.h:12: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {BALL::TSphere3}; _Tp = BALL::TSphere3; _Alloc = std::allocator >]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BALL::TSphere3}; _Tp = BALL::TSphere3; _Alloc = std::allocator >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BALL::TSphere3; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual BALL::Processor::Result BALL::SurfaceProcessor::operator()(BALL::Atom&)’ at /<>/source/STRUCTURE/surfaceProcessor.C:38:22: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {BALL::TSphere3}; _Tp = BALL::TSphere3; _Alloc = std::allocator >]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = BALL::TSphere3; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual BALL::Processor::Result BALL::SurfaceProcessor::operator()(BALL::Atom&)’ at /<>/source/STRUCTURE/surfaceProcessor.C:42:22: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangle.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/triangle.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/triangle.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/triangle.C.o -c /<>/source/STRUCTURE/triangle.C [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangleEdge.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/triangleEdge.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/triangleEdge.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/triangleEdge.C.o -c /<>/source/STRUCTURE/triangleEdge.C [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/trianglePoint.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/trianglePoint.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/trianglePoint.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/trianglePoint.C.o -c /<>/source/STRUCTURE/trianglePoint.C [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSAS.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSAS.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSAS.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSAS.C.o -c /<>/source/STRUCTURE/triangulatedSAS.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/source/STRUCTURE/triangulatedSAS.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/STRUCTURE/triangulatedSAS.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/triangulatedSAS.C: In member function ‘void BALL::SASTriangulator::onePointOutside(BALL::Index, BALL::Triangle*, BALL::TriangulatedSurface&, BALL::HashGrid3&)’: /<>/source/STRUCTURE/triangulatedSAS.C:426:32: warning: variable ‘v2’ set but not used [-Wunused-but-set-variable] 426 | TrianglePoint* v2; | ^~ In file included from /<>/include/BALL/CONCEPT/forwardIterator.h:9, from /<>/include/BALL/CONCEPT/bidirectionalIterator.h:9: /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/source/STRUCTURE/triangulatedSAS.C:583:27: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/STRUCTURE/triangulatedSAS.h:49, from /<>/source/STRUCTURE/triangulatedSAS.C:15: /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = BALL::TrianglePoint*]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TrianglePoint*; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TrianglePoint*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TrianglePoint*; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TrianglePoint*]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TrianglePoint*; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/STRUCTURE/triangulatedSAS.C:583:26: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSES.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSES.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSES.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSES.C.o -c /<>/source/STRUCTURE/triangulatedSES.C In file included from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:45, from /<>/source/STRUCTURE/triangulatedSES.C:5: /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1667:20: required from ‘void BALL::HashGrid3::dump(std::ostream&, BALL::Size) const [with Item = int; std::ostream = std::basic_ostream; BALL::Size = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:1625:7: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/SESEdge.h:9, from /<>/include/BALL/STRUCTURE/solventExcludedSurface.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::TVector3&}; _Tp = BALL::TVector3; _Alloc = std::allocator >]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::TVector3; _Alloc = std::allocator >]’, inlined from ‘void BALL::SESTriangulator::partitionNonFreeSingularEdge(BALL::SESEdge*)’ at /<>/source/STRUCTURE/triangulatedSES.C:640:19: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::TVector3; _Alloc = std::allocator >]’, inlined from ‘void BALL::SESTriangulator::triangulateSingularToricFace(BALL::SESFace*, const double&)’ at /<>/source/STRUCTURE/triangulatedSES.C:503:20: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSurface.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSurface.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSurface.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/triangulatedSurface.C.o -c /<>/source/STRUCTURE/triangulatedSurface.C /<>/source/STRUCTURE/triangulatedSurface.C: In member function ‘void BALL::TriangulatedSurface::remove(PointIterator, bool)’: /<>/source/STRUCTURE/triangulatedSurface.C:410:24: warning: pointer used after ‘void operator delete(void*)’ [-Wuse-after-free] 410 | delete *point; | ^~~~~~ In file included from /usr/include/arm-linux-gnueabihf/c++/12/bits/c++allocator.h:33, from /usr/include/c++/12/bits/allocator.h:46, from /usr/include/c++/12/string:41, from /<>/include/BALL/COMMON/debug.h:18, from /<>/include/BALL/common.h:16, from /<>/include/BALL/STRUCTURE/graphEdge.h:9, from /<>/include/BALL/STRUCTURE/triangle.h:9, from /<>/include/BALL/STRUCTURE/triangulatedSurface.h:9, from /<>/source/STRUCTURE/triangulatedSurface.C:5: In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]’, inlined from ‘static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]’ at /usr/include/c++/12/bits/alloc_traits.h:496:23, inlined from ‘void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = BALL::TrianglePoint*; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_list.h:522:39, inlined from ‘void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = BALL::TrianglePoint*; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_list.h:2024:13, inlined from ‘std::__cxx11::list<_Tp, _Alloc>::iterator std::__cxx11::list<_Tp, _Alloc>::erase(const_iterator) [with _Tp = BALL::TrianglePoint*; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/list.tcc:158:15, inlined from ‘void BALL::TriangulatedSurface::remove(PointIterator, bool)’ at /<>/source/STRUCTURE/triangulatedSurface.C:408:16: /usr/include/c++/12/bits/new_allocator.h:158:33: note: call to ‘void operator delete(void*)’ here 158 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/UCK.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/UCK.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/UCK.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/UCK.C.o -c /<>/source/STRUCTURE/UCK.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/source/STRUCTURE/UCK.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/residueRotamerSet.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/residueRotamerSet.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/residueRotamerSet.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/residueRotamerSet.C.o -c /<>/source/STRUCTURE/residueRotamerSet.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/STRUCTURE/structureMapper.h:25, from /<>/source/STRUCTURE/residueRotamerSet.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/STRUCTURE/residueRotamerSet.h:17, from /<>/source/STRUCTURE/residueRotamerSet.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueRotamerSet.C: In member function ‘BALL::Rotamer BALL::ResidueRotamerSet::getRotamer(const BALL::Residue&) const’: /<>/source/STRUCTURE/residueRotamerSet.C:636:58: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 636 | for (atom_it = residue.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueRotamerSet.C:671:58: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 671 | for (atom_it = residue.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueRotamerSet.C:706:58: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 706 | for (atom_it = residue.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/STRUCTURE/residueRotamerSet.C:741:58: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 741 | for (atom_it = residue.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/rotamerLibrary.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/rotamerLibrary.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/rotamerLibrary.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/rotamerLibrary.C.o -c /<>/source/STRUCTURE/rotamerLibrary.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/STRUCTURE/fragmentDB.h:13, from /<>/include/BALL/STRUCTURE/rotamerLibrary.h:9, from /<>/source/STRUCTURE/rotamerLibrary.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/RMSDMinimizer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/RMSDMinimizer.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/RMSDMinimizer.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/RMSDMinimizer.C.o -c /<>/source/STRUCTURE/RMSDMinimizer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/STRUCTURE/atomBijection.h:13, from /<>/include/BALL/STRUCTURE/RMSDMinimizer.h:9, from /<>/source/STRUCTURE/RMSDMinimizer.C:10: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserParser.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserParser.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserParser.C.o -c /<>/build/source/STRUCTURE/smilesParserParser.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/smilesParser.h:17, from source/STRUCTURE/smilesParserParser.y:3: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/smilesParser.h:13: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserLexer.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserLexer.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/smilesParserLexer.C.o -c /<>/build/source/STRUCTURE/smilesParserLexer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/include/BALL/STRUCTURE/smilesParser.h:17, from source/STRUCTURE/smilesParserLexer.l:2: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/STRUCTURE/smilesParser.h:13: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/build/source/STRUCTURE/smilesParserLexer.C: At global scope: /<>/build/source/STRUCTURE/smilesParserLexer.C:1933:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] 1933 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserParser.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserParser.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserParser.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserParser.C.o -c /<>/build/source/STRUCTURE/smartsParserParser.C source/STRUCTURE/smartsParserParser.y: In function ‘int SmartsParserparse()’: source/STRUCTURE/smartsParserParser.y:369:29: warning: implicitly-declared ‘constexpr BALL::SmartsParser::SPAtom::Property::Property(const BALL::SmartsParser::SPAtom::Property&)’ is deprecated [-Wdeprecated-copy] In file included from source/STRUCTURE/smartsParserParser.y:3: /<>/include/BALL/STRUCTURE/smartsParser.h:246:54: note: because ‘BALL::SmartsParser::SPAtom::Property’ has user-provided ‘void BALL::SmartsParser::SPAtom::Property::operator=(const BALL::SmartsParser::SPAtom::Property&)’ 246 | void operator = (const Property& rhs); | ^~~~~~~~ /<>/include/BALL/STRUCTURE/smartsParser.h:334:59: note: initializing argument 1 of ‘void BALL::SmartsParser::SPAtom::setProperty(Property)’ 334 | void setProperty(Property property); | ~~~~~~~~~^~~~~~~~ source/STRUCTURE/smartsParserParser.y:375:29: warning: implicitly-declared ‘constexpr BALL::SmartsParser::SPAtom::Property::Property(const BALL::SmartsParser::SPAtom::Property&)’ is deprecated [-Wdeprecated-copy] /<>/include/BALL/STRUCTURE/smartsParser.h:246:54: note: because ‘BALL::SmartsParser::SPAtom::Property’ has user-provided ‘void BALL::SmartsParser::SPAtom::Property::operator=(const BALL::SmartsParser::SPAtom::Property&)’ 246 | void operator = (const Property& rhs); | ^~~~~~~~ /<>/include/BALL/STRUCTURE/smartsParser.h:334:59: note: initializing argument 1 of ‘void BALL::SmartsParser::SPAtom::setProperty(Property)’ 334 | void setProperty(Property property); | ~~~~~~~~~^~~~~~~~ source/STRUCTURE/smartsParserParser.y:380:33: warning: implicitly-declared ‘constexpr BALL::SmartsParser::SPAtom::Property::Property(const BALL::SmartsParser::SPAtom::Property&)’ is deprecated [-Wdeprecated-copy] /<>/include/BALL/STRUCTURE/smartsParser.h:246:54: note: because ‘BALL::SmartsParser::SPAtom::Property’ has user-provided ‘void BALL::SmartsParser::SPAtom::Property::operator=(const BALL::SmartsParser::SPAtom::Property&)’ 246 | void operator = (const Property& rhs); | ^~~~~~~~ /<>/include/BALL/STRUCTURE/smartsParser.h:334:59: note: initializing argument 1 of ‘void BALL::SmartsParser::SPAtom::setProperty(Property)’ 334 | void setProperty(Property property); | ~~~~~~~~~^~~~~~~~ source/STRUCTURE/smartsParserParser.y:386:33: warning: implicitly-declared ‘constexpr BALL::SmartsParser::SPAtom::Property::Property(const BALL::SmartsParser::SPAtom::Property&)’ is deprecated [-Wdeprecated-copy] /<>/include/BALL/STRUCTURE/smartsParser.h:246:54: note: because ‘BALL::SmartsParser::SPAtom::Property’ has user-provided ‘void BALL::SmartsParser::SPAtom::Property::operator=(const BALL::SmartsParser::SPAtom::Property&)’ 246 | void operator = (const Property& rhs); | ^~~~~~~~ /<>/include/BALL/STRUCTURE/smartsParser.h:334:59: note: initializing argument 1 of ‘void BALL::SmartsParser::SPAtom::setProperty(Property)’ 334 | void setProperty(Property property); | ~~~~~~~~~^~~~~~~~ source/STRUCTURE/smartsParserParser.y:472:33: warning: implicitly-declared ‘constexpr BALL::SmartsParser::SPAtom::Property::Property(const BALL::SmartsParser::SPAtom::Property&)’ is deprecated [-Wdeprecated-copy] /<>/include/BALL/STRUCTURE/smartsParser.h:246:54: note: because ‘BALL::SmartsParser::SPAtom::Property’ has user-provided ‘void BALL::SmartsParser::SPAtom::Property::operator=(const BALL::SmartsParser::SPAtom::Property&)’ 246 | void operator = (const Property& rhs); | ^~~~~~~~ /<>/include/BALL/STRUCTURE/smartsParser.h:334:59: note: initializing argument 1 of ‘void BALL::SmartsParser::SPAtom::setProperty(Property)’ 334 | void setProperty(Property property); | ~~~~~~~~~^~~~~~~~ source/STRUCTURE/smartsParserParser.y:513:33: warning: implicitly-declared ‘constexpr BALL::SmartsParser::SPAtom::Property::Property(const BALL::SmartsParser::SPAtom::Property&)’ is deprecated [-Wdeprecated-copy] /<>/include/BALL/STRUCTURE/smartsParser.h:246:54: note: because ‘BALL::SmartsParser::SPAtom::Property’ has user-provided ‘void BALL::SmartsParser::SPAtom::Property::operator=(const BALL::SmartsParser::SPAtom::Property&)’ 246 | void operator = (const Property& rhs); | ^~~~~~~~ /<>/include/BALL/STRUCTURE/smartsParser.h:334:59: note: initializing argument 1 of ‘void BALL::SmartsParser::SPAtom::setProperty(Property)’ 334 | void setProperty(Property property); | ~~~~~~~~~^~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserLexer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserLexer.C.o -MF CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserLexer.C.o.d -o CMakeFiles/BALL.dir/source/STRUCTURE/smartsParserLexer.C.o -c /<>/build/source/STRUCTURE/smartsParserLexer.C /<>/build/source/STRUCTURE/smartsParserLexer.C:2023:24: warning: ‘void yy_fatal_error(const char*)’ defined but not used [-Wunused-function] 2023 | static void yynoreturn yy_fatal_error (const char* msg ) | ^~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformation.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformation.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformation.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformation.C.o -c /<>/source/DOCKING/COMMON/conformation.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/DOCKING/COMMON/conformation.h:8, from /<>/source/DOCKING/COMMON/conformation.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/constraints.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/constraints.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/constraints.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/constraints.C.o -c /<>/source/DOCKING/COMMON/constraints.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/constraints.h:22, from /<>/source/DOCKING/COMMON/constraints.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DOCKING/COMMON/constraints.h:10: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformationSet.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformationSet.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformationSet.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/conformationSet.C.o -c /<>/source/DOCKING/COMMON/conformationSet.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /<>/source/DOCKING/COMMON/conformationSet.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/COMMON/macros.h:10, from /<>/include/BALL/DATATYPE/string.h:18, from /<>/include/BALL/DATATYPE/hashMap.h:13, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::SnapShot&}; _Tp = BALL::SnapShot; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::SnapShot; _Alloc = std::allocator]’, inlined from ‘void BALL::ConformationSet::add(float, const BALL::System&)’ at /<>/source/DOCKING/COMMON/conformationSet.C:44:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::SnapShot; _Alloc = std::allocator]’, inlined from ‘bool BALL::ConformationSet::readDCDFile(const BALL::String&)’ at /<>/source/DOCKING/COMMON/conformationSet.C:128:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockingAlgorithm.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockingAlgorithm.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockingAlgorithm.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockingAlgorithm.C.o -c /<>/source/DOCKING/COMMON/dockingAlgorithm.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:14, from /<>/source/DOCKING/COMMON/dockingAlgorithm.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:10: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/DOCKING/COMMON/dockingAlgorithm.C: In member function ‘virtual double BALL::DockingAlgorithm::dockLigand(BALL::AtomContainer&, bool)’: /<>/source/DOCKING/COMMON/dockingAlgorithm.C:304:60: warning: unused parameter ‘ligand’ [-Wunused-parameter] 304 | double DockingAlgorithm::dockLigand(AtomContainer& ligand, bool verbose) | ~~~~~~~~~~~~~~~^~~~~~ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:304:73: warning: unused parameter ‘verbose’ [-Wunused-parameter] 304 | double DockingAlgorithm::dockLigand(AtomContainer& ligand, bool verbose) | ~~~~~^~~~~~~ /<>/source/DOCKING/COMMON/dockingAlgorithm.C: In member function ‘void BALL::DockingAlgorithm::processMultiMoleculeFile(std::string, std::string, double, std::vector*, BALL::String, BALL::String)’: /<>/source/DOCKING/COMMON/dockingAlgorithm.C:549:65: warning: catching polymorphic type ‘class BALL::Exception::GeneralException’ by value [-Wcatch-value=] 549 | catch(BALL::Exception::GeneralException e) | ^ /<>/source/DOCKING/COMMON/dockingAlgorithm.C: In static member function ‘static BALL::Matrix4x4 BALL::DockingAlgorithm::mapCompounds(const BALL::AtomContainer&, const BALL::AtomContainer&, BALL::Size&, double&, double, double, double)’: /<>/source/DOCKING/COMMON/dockingAlgorithm.C:655:45: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 655 | for (atom_it = S1.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:680:45: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 680 | for (atom_it = S2.beginAtom(); +atom_it; ++atom_it) | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::AtomIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Atom; Position = BALL::BidirectionalIterator; Traits = BALL::AtomIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/forwardIterator.h:9, from /<>/include/BALL/DATATYPE/hashSet.h:17, from /<>/include/BALL/SYSTEM/file.h:16, from /<>/include/BALL/FORMAT/paramFile.h:8, from /<>/include/BALL/DATATYPE/options.h:22: /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:237:76: required from ‘BALL::ForwardIterator& BALL::ForwardIterator::operator=(const BALL::ForwardIterator&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:713:36: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3::BoxIteratorTraits& BALL::HashGridBox3::BoxIteratorTraits::operator=(const BALL::HashGridBox3::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/DOCKING/COMMON/constraints.h:26, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:30: /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = unsigned int]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/baseIterator.h: In instantiation of ‘BALL::BaseIterator& BALL::BaseIterator::operator=(const BALL::BaseIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’: /<>/include/BALL/CONCEPT/forwardIterator.h:63:68: required from ‘BALL::ConstForwardIterator& BALL::ConstForwardIterator::operator=(const BALL::ConstForwardIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:237:76: required from ‘BALL::ForwardIterator& BALL::ForwardIterator::operator=(const BALL::ForwardIterator&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:798:38: required from here /<>/include/BALL/CONCEPT/baseIterator.h:111:33: warning: implicitly-declared ‘BALL::HashGridBox3 >::BoxIteratorTraits& BALL::HashGridBox3 >::BoxIteratorTraits::operator=(const BALL::HashGridBox3 >::BoxIteratorTraits&)’ is deprecated [-Wdeprecated-copy] 111 | traits_ = iterator.traits_; | ~~~~~~~~^~~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h:209:25: note: because ‘BALL::HashGridBox3 >::BoxIteratorTraits’ has user-provided ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3::BoxIteratorTraits&, bool) [with Item = BALL::TVector3]’ 209 | BoxIteratorTraits(const BoxIteratorTraits& traits, bool /* deep */ = true) | ^~~~~~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = unsigned int; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = unsigned int; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = unsigned int]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3; DataType = BALL::HashGridBox3; Position = unsigned int; Traits = BALL::HashGridBox3::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = unsigned int; BoxIterator = BALL::ForwardIterator, BALL::HashGridBox3, unsigned int, BALL::HashGridBox3::BoxIteratorTraits>]’ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:713:35: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] 1726 | if ((&box < &box_[0]) || (&box - &box_[0] >= getSize())) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /<>/include/BALL/DATATYPE/hashGrid.h: In instantiation of ‘BALL::Index BALL::HashGrid3::getIndex_(const BALL::HashGridBox3&) const [with Item = BALL::TVector3; BALL::Index = int]’: /<>/include/BALL/DATATYPE/hashGrid.h:1516:17: required from ‘bool BALL::HashGrid3::getIndices(const BALL::HashGridBox3&, BALL::Position&, BALL::Position&, BALL::Position&) const [with Item = BALL::TVector3; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:563:21: required from ‘void BALL::HashGridBox3::getIndices(BALL::Position&, BALL::Position&, BALL::Position&) [with Item = BALL::TVector3; BALL::Position = unsigned int]’ /<>/include/BALL/DATATYPE/hashGrid.h:206:13: required from ‘BALL::HashGridBox3::BoxIteratorTraits::BoxIteratorTraits(const BALL::HashGridBox3&) [with Item = BALL::TVector3]’ /<>/include/BALL/CONCEPT/baseIterator.h:190:6: required from ‘BALL::BaseIterator::BaseIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:128:67: required from ‘BALL::ConstForwardIterator::ConstForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:298:20: required from ‘BALL::ForwardIterator::ForwardIterator(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/CONCEPT/forwardIterator.h:309:19: required from ‘static BALL::ForwardIterator BALL::ForwardIterator::begin(const Container&) [with Container = BALL::HashGridBox3 >; DataType = BALL::HashGridBox3 >; Position = unsigned int; Traits = BALL::HashGridBox3 >::BoxIteratorTraits]’ /<>/include/BALL/DATATYPE/hashGrid.h:332:29: required from ‘BALL::HashGridBox3::BoxIterator BALL::HashGridBox3::beginBox() [with Item = BALL::TVector3; BoxIterator = BALL::ForwardIterator >, BALL::HashGridBox3 >, unsigned int, BALL::HashGridBox3 >::BoxIteratorTraits>]’ /<>/source/DOCKING/COMMON/dockingAlgorithm.C:798:37: required from here /<>/include/BALL/DATATYPE/hashGrid.h:1726:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘BALL::Size’ {aka ‘unsigned int’} [-Wsign-compare] [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockResult.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockResult.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockResult.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/dockResult.C.o -c /<>/source/DOCKING/COMMON/dockResult.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/secondaryStructure.h:9, from /<>/include/BALL/FORMAT/PDBdefs.h:17, from /<>/include/BALL/FORMAT/PDBFile.h:25, from /<>/source/DOCKING/COMMON/dockResult.C:8: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/DATATYPE/bitVector.h:13, from /<>/include/BALL/CONCEPT/property.h:15, from /<>/include/BALL/FORMAT/PDBFile.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/DOCKING/COMMON/dockResult.C: In member function ‘bool BALL::DockResult::readDockResult(std::istream&)’: /<>/source/DOCKING/COMMON/dockResult.C:402:59: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 402 | catch (Exception::InvalidFormat) | ^~~~~~~~~~~~~ /<>/source/DOCKING/COMMON/dockResult.C:419:59: warning: catching polymorphic type ‘class BALL::Exception::InvalidFormat’ by value [-Wcatch-value=] 419 | catch (Exception::InvalidFormat) | ^~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexDefinition.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexDefinition.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexDefinition.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexDefinition.C.o -c /<>/source/DOCKING/COMMON/flexDefinition.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/DOCKING/COMMON/flexDefinition.h:9, from /<>/source/DOCKING/COMMON/flexDefinition.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexibleMolecule.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexibleMolecule.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexibleMolecule.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/flexibleMolecule.C.o -c /<>/source/DOCKING/COMMON/flexibleMolecule.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/include/BALL/DOCKING/COMMON/flexibleMolecule.h:9, from /<>/source/DOCKING/COMMON/flexibleMolecule.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/gridAnalysis.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/gridAnalysis.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/gridAnalysis.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/gridAnalysis.C.o -c /<>/source/DOCKING/COMMON/gridAnalysis.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/DOCKING/COMMON/gridAnalysis.h:9, from /<>/source/DOCKING/COMMON/gridAnalysis.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/poseClustering.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/poseClustering.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/poseClustering.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/poseClustering.C.o -c /<>/source/DOCKING/COMMON/poseClustering.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/conformationSet.h:13, from /<>/include/BALL/DOCKING/COMMON/poseClustering.h:13, from /<>/source/DOCKING/COMMON/poseClustering.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/DOCKING/COMMON/poseClustering.h:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/DOCKING/COMMON/poseClustering.C: In member function ‘bool BALL::PoseClustering::nearestNeighborChainCompute_()’: /<>/source/DOCKING/COMMON/poseClustering.C:927:22: warning: unused variable ‘run_parallel’ [-Wunused-variable] 927 | bool run_parallel = options.getBool(PoseClustering::Option::RUN_PARALLEL); | ^~~~~~~~~~~~ In file included from /usr/include/boost/graph/detail/adjacency_list.hpp:35, from /usr/include/boost/graph/adjacency_list.hpp:255, from /<>/include/BALL/DOCKING/COMMON/poseClustering.h:53: In member function ‘bool boost::detail::adj_list_edge_iterator::operator!=(const self&) const [with VertexIterator = boost::range_detail::integer_iterator; OutEdgeIterator = boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>; Graph = boost::adjacency_list]’, inlined from ‘void boost::write_graphviz(std::ostream&, const Graph&, VertexPropertiesWriter, EdgePropertiesWriter, GraphPropertiesWriter, VertexID, typename enable_if_c::traversal_category>::value, graph::detail::no_parameter>::type) [with Graph = adjacency_list; VertexPropertiesWriter = BALL::PoseClustering::ClusterTreeWriter_; EdgePropertiesWriter = default_writer; GraphPropertiesWriter = default_writer; VertexID = vec_adj_list_vertex_id_map]’ at /usr/include/boost/graph/graphviz.hpp:284:50: /usr/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*(boost::detail::stored_edge_property* const*)((char*)&edge_end + offsetof(boost::detail::edge_iterator, boost::detail::adj_list_edge_iterator, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::adjacency_list >::edges.boost::optional*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::.boost::optional_detail::optional_base*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::m_storage.boost::optional_detail::aligned_storage*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::dummy_))’ may be used uninitialized [-Wmaybe-uninitialized] 111 | || (vCurr != vEnd | ~~~~~~~~~~~~~~ 112 | && edges BOOST_GRAPH_MEMBER first | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 | != x.edges BOOST_GRAPH_MEMBER first); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/source/DOCKING/COMMON/poseClustering.C:21: /usr/include/boost/graph/graphviz.hpp: In function ‘void boost::write_graphviz(std::ostream&, const Graph&, VertexPropertiesWriter, EdgePropertiesWriter, GraphPropertiesWriter, VertexID, typename enable_if_c::traversal_category>::value, graph::detail::no_parameter>::type) [with Graph = adjacency_list; VertexPropertiesWriter = BALL::PoseClustering::ClusterTreeWriter_; EdgePropertiesWriter = default_writer; GraphPropertiesWriter = default_writer; VertexID = vec_adj_list_vertex_id_map]’: /usr/include/boost/graph/graphviz.hpp:283:55: note: ‘*(boost::detail::stored_edge_property* const*)((char*)&edge_end + offsetof(boost::detail::edge_iterator, boost::detail::adj_list_edge_iterator, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::adjacency_list >::edges.boost::optional*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::.boost::optional_detail::optional_base*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::m_storage.boost::optional_detail::aligned_storage*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::dummy_))’ was declared here 283 | typename graph_traits< Graph >::edge_iterator ei, edge_end; | ^~~~~~~~ In member function ‘boost::detail::adj_list_edge_iterator::self& boost::detail::adj_list_edge_iterator::operator++() [with VertexIterator = boost::range_detail::integer_iterator; OutEdgeIterator = boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>; Graph = boost::adjacency_list]’, inlined from ‘void boost::write_graphviz(std::ostream&, const Graph&, VertexPropertiesWriter, EdgePropertiesWriter, GraphPropertiesWriter, VertexID, typename enable_if_c::traversal_category>::value, graph::detail::no_parameter>::type) [with Graph = adjacency_list; VertexPropertiesWriter = BALL::PoseClustering::ClusterTreeWriter_; EdgePropertiesWriter = default_writer; GraphPropertiesWriter = default_writer; VertexID = vec_adj_list_vertex_id_map]’ at /usr/include/boost/graph/graphviz.hpp:284:63: /usr/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘((boost::detail::stored_edge_property* const*)((char*)&ei + offsetof(boost::detail::edge_iterator, boost::detail::adj_list_edge_iterator, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::adjacency_list >::edges.boost::optional*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::.boost::optional_detail::optional_base*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::m_storage.boost::optional_detail::aligned_storage*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::dummy_)))[2]’ may be used uninitialized [-Wmaybe-uninitialized] 80 | if (edges BOOST_GRAPH_MEMBER first | ^~ /usr/include/boost/graph/graphviz.hpp: In function ‘void boost::write_graphviz(std::ostream&, const Graph&, VertexPropertiesWriter, EdgePropertiesWriter, GraphPropertiesWriter, VertexID, typename enable_if_c::traversal_category>::value, graph::detail::no_parameter>::type) [with Graph = adjacency_list; VertexPropertiesWriter = BALL::PoseClustering::ClusterTreeWriter_; EdgePropertiesWriter = default_writer; GraphPropertiesWriter = default_writer; VertexID = vec_adj_list_vertex_id_map]’: /usr/include/boost/graph/graphviz.hpp:283:51: note: ‘((boost::detail::stored_edge_property* const*)((char*)&ei + offsetof(boost::detail::edge_iterator, boost::detail::adj_list_edge_iterator, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::adjacency_list >::edges.boost::optional*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::.boost::optional_detail::optional_base*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::m_storage.boost::optional_detail::aligned_storage*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::dummy_)))[2]’ was declared here 283 | typename graph_traits< Graph >::edge_iterator ei, edge_end; | ^~ In member function ‘bool boost::detail::adj_list_edge_iterator::operator!=(const self&) const [with VertexIterator = boost::range_detail::integer_iterator; OutEdgeIterator = boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>; Graph = boost::adjacency_list]’, inlined from ‘void boost::vec_adj_list_impl::copy_impl(const boost::vec_adj_list_impl&) [with Graph = boost::adjacency_list; Config = boost::detail::adj_list_gen, boost::vecS, boost::vecS, boost::directedS, BALL::PoseClustering::ClusterProperties, boost::no_property, unsigned int, boost::listS>::config; Base = boost::directed_graph_helper, boost::vecS, boost::vecS, boost::directedS, BALL::PoseClustering::ClusterProperties, boost::no_property, unsigned int, boost::listS>::config>]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:2188:52, inlined from ‘boost::vec_adj_list_impl::vec_adj_list_impl(const boost::vec_adj_list_impl&) [with Graph = boost::adjacency_list; Config = boost::detail::adj_list_gen, boost::vecS, boost::vecS, boost::directedS, BALL::PoseClustering::ClusterProperties, boost::no_property, unsigned int, boost::listS>::config; Base = boost::directed_graph_helper, boost::vecS, boost::vecS, boost::directedS, BALL::PoseClustering::ClusterProperties, boost::no_property, unsigned int, boost::listS>::config>]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:2118:69, inlined from ‘boost::adjacency_list::adjacency_list(const boost::adjacency_list&) [with OutEdgeListS = boost::vecS; VertexListS = boost::vecS; DirectedS = boost::directedS; VertexProperty = BALL::PoseClustering::ClusterProperties; EdgeProperty = boost::no_property; GraphProperty = unsigned int; EdgeListS = boost::listS]’ at /usr/include/boost/graph/adjacency_list.hpp:321:65, inlined from ‘BALL::PoseClustering::PoseClustering(const BALL::PoseClustering&)’ at /<>/include/BALL/DOCKING/COMMON/poseClustering.h:126:21: /usr/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*(boost::detail::stored_edge_property* const*)((char*)&ei_end + offsetof(boost::detail::edge_iterator, boost::detail::adj_list_edge_iterator, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::adjacency_list >::edges.boost::optional*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::.boost::optional_detail::optional_base*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::m_storage.boost::optional_detail::aligned_storage*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::dummy_))’ may be used uninitialized [-Wmaybe-uninitialized] 111 | || (vCurr != vEnd | ~~~~~~~~~~~~~~ 112 | && edges BOOST_GRAPH_MEMBER first | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 | != x.edges BOOST_GRAPH_MEMBER first); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/graph/detail/adjacency_list.hpp: In copy constructor ‘BALL::PoseClustering::PoseClustering(const BALL::PoseClustering&)’: /usr/include/boost/graph/detail/adjacency_list.hpp:2187:27: note: ‘*(boost::detail::stored_edge_property* const*)((char*)&ei_end + offsetof(boost::detail::edge_iterator, boost::detail::adj_list_edge_iterator, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::adjacency_list >::edges.boost::optional*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::.boost::optional_detail::optional_base*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::m_storage.boost::optional_detail::aligned_storage*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::dummy_))’ was declared here 2187 | edge_iterator ei, ei_end; | ^~~~~~ In member function ‘boost::detail::adj_list_edge_iterator::self& boost::detail::adj_list_edge_iterator::operator++() [with VertexIterator = boost::range_detail::integer_iterator; OutEdgeIterator = boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>; Graph = boost::adjacency_list]’, inlined from ‘void boost::vec_adj_list_impl::copy_impl(const boost::vec_adj_list_impl&) [with Graph = boost::adjacency_list; Config = boost::detail::adj_list_gen, boost::vecS, boost::vecS, boost::directedS, BALL::PoseClustering::ClusterProperties, boost::no_property, unsigned int, boost::listS>::config; Base = boost::directed_graph_helper, boost::vecS, boost::vecS, boost::directedS, BALL::PoseClustering::ClusterProperties, boost::no_property, unsigned int, boost::listS>::config>]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:2188:63, inlined from ‘boost::vec_adj_list_impl::vec_adj_list_impl(const boost::vec_adj_list_impl&) [with Graph = boost::adjacency_list; Config = boost::detail::adj_list_gen, boost::vecS, boost::vecS, boost::directedS, BALL::PoseClustering::ClusterProperties, boost::no_property, unsigned int, boost::listS>::config; Base = boost::directed_graph_helper, boost::vecS, boost::vecS, boost::directedS, BALL::PoseClustering::ClusterProperties, boost::no_property, unsigned int, boost::listS>::config>]’ at /usr/include/boost/graph/detail/adjacency_list.hpp:2118:69, inlined from ‘boost::adjacency_list::adjacency_list(const boost::adjacency_list&) [with OutEdgeListS = boost::vecS; VertexListS = boost::vecS; DirectedS = boost::directedS; VertexProperty = BALL::PoseClustering::ClusterProperties; EdgeProperty = boost::no_property; GraphProperty = unsigned int; EdgeListS = boost::listS]’ at /usr/include/boost/graph/adjacency_list.hpp:321:65, inlined from ‘BALL::PoseClustering::PoseClustering(const BALL::PoseClustering&)’ at /<>/include/BALL/DOCKING/COMMON/poseClustering.h:126:21: /usr/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘((boost::detail::stored_edge_property* const*)((char*)&ei + offsetof(boost::detail::edge_iterator, boost::detail::adj_list_edge_iterator, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::adjacency_list >::edges.boost::optional*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::.boost::optional_detail::optional_base*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::m_storage.boost::optional_detail::aligned_storage*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::dummy_)))[2]’ may be used uninitialized [-Wmaybe-uninitialized] 80 | if (edges BOOST_GRAPH_MEMBER first | ^~ /usr/include/boost/graph/detail/adjacency_list.hpp: In copy constructor ‘BALL::PoseClustering::PoseClustering(const BALL::PoseClustering&)’: /usr/include/boost/graph/detail/adjacency_list.hpp:2187:23: note: ‘((boost::detail::stored_edge_property* const*)((char*)&ei + offsetof(boost::detail::edge_iterator, boost::detail::adj_list_edge_iterator, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::adjacency_list >::edges.boost::optional*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::.boost::optional_detail::optional_base*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::m_storage.boost::optional_detail::aligned_storage*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int>, boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned int, boost::detail::edge_desc_impl, int> > >::dummy_)))[2]’ was declared here 2187 | edge_iterator ei, ei_end; | ^~ [ 85%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/receptor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/receptor.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/receptor.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/receptor.C.o -c /<>/source/DOCKING/COMMON/receptor.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/DOCKING/COMMON/receptor.h:9, from /<>/source/DOCKING/COMMON/receptor.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/result.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/result.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/result.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/result.C.o -c /<>/source/DOCKING/COMMON/result.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/fragment.h:9, from /<>/include/BALL/KERNEL/residue.h:9, from /<>/include/BALL/KERNEL/chain.h:9, from /<>/include/BALL/KERNEL/chainIterator.h:11, from /<>/include/BALL/KERNEL/protein.h:9, from /<>/include/BALL/DOCKING/COMMON/receptor.h:9, from /<>/include/BALL/DOCKING/COMMON/result.h:9, from /<>/source/DOCKING/COMMON/result.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/COMMON/logStream.h:23, from /<>/include/BALL/common.h:36, from /<>/include/BALL/CONCEPT/composite.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::Result::ResultData&}; _Tp = BALL::Result::ResultData; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::Result::ResultData; _Alloc = std::allocator]’, inlined from ‘void BALL::Result::add(BALL::String, ResultData&)’ at /<>/source/DOCKING/COMMON/result.C:327:41: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::Result::ResultData; _Alloc = std::allocator]’, inlined from ‘std::vector BALL::Result::getOutputConformations(BALL::Ligand*)’ at /<>/source/DOCKING/COMMON/result.C:260:18: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/sideChainOptimizer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/sideChainOptimizer.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/sideChainOptimizer.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/sideChainOptimizer.C.o -c /<>/source/DOCKING/COMMON/sideChainOptimizer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SCORING/COMMON/scoringFunction.h:10, from /<>/include/BALL/DOCKING/COMMON/sideChainOptimizer.h:9, from /<>/source/DOCKING/COMMON/sideChainOptimizer.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/staticLigandFragment.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/staticLigandFragment.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/staticLigandFragment.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/staticLigandFragment.C.o -c /<>/source/DOCKING/COMMON/staticLigandFragment.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/COMMON/structurePreparer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/COMMON/structurePreparer.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/COMMON/structurePreparer.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/COMMON/structurePreparer.C.o -c /<>/source/DOCKING/COMMON/structurePreparer.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/DOCKING/COMMON/structurePreparer.h:10, from /<>/source/DOCKING/COMMON/structurePreparer.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/CONCEPT/composite.h:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/source/DOCKING/COMMON/structurePreparer.C:15: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/dockProblem.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/dockProblem.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/dockProblem.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/dockProblem.C.o -c /<>/source/DOCKING/GENETICDOCK/dockProblem.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/molecule.h:9, from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/simpleBox3.h:15, from /<>/include/BALL/FORMAT/HINFile.h:13, from /<>/source/DOCKING/GENETICDOCK/dockProblem.C:5: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/evolutionaryDocking.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/evolutionaryDocking.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/evolutionaryDocking.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/evolutionaryDocking.C.o -c /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:14, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:5: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/regularData3D.h:9, from /<>/include/BALL/DOCKING/GENETICDOCK/evolutionaryDocking.h:10: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/COMMON/rtti.h:13, from /<>/include/BALL/CONCEPT/persistenceManager.h:9: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:10: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C: In member function ‘virtual void BALL::EvolutionaryDocking::setup(BALL::System&, BALL::ScoringFunction*)’: /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:148:79: warning: ‘new’ of type ‘BALL::DockProblem’ with extended alignment 16 [-Waligned-new=] 148 | dp_ = new DockProblem(ligand, sf, this, post_dock_optimization); | ^ /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:148:79: note: uses ‘void* operator new(std::size_t)’, which does not have an alignment parameter /<>/source/DOCKING/GENETICDOCK/evolutionaryDocking.C:148:79: note: use ‘-faligned-new’ to enable C++17 over-aligned new support [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/genes.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/genes.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/genes.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/genes.C.o -c /<>/source/DOCKING/GENETICDOCK/genes.C /<>/source/DOCKING/GENETICDOCK/genes.C: In member function ‘virtual BALL::GenericGene* BALL::QuaternionGene::mate(BALL::GenericGene*)’: /<>/source/DOCKING/GENETICDOCK/genes.C:203:54: warning: ‘new’ of type ‘BALL::QuaternionGene’ with extended alignment 16 [-Waligned-new=] 203 | QuaternionGene *result = new QuaternionGene; | ^~~~~~~~~~~~~~ /<>/source/DOCKING/GENETICDOCK/genes.C:203:54: note: uses ‘void* operator new(std::size_t)’, which does not have an alignment parameter /<>/source/DOCKING/GENETICDOCK/genes.C:203:54: note: use ‘-faligned-new’ to enable C++17 over-aligned new support /<>/source/DOCKING/GENETICDOCK/genes.C: In member function ‘virtual BALL::GenericGene* BALL::QuaternionGene::clone()’: /<>/source/DOCKING/GENETICDOCK/genes.C:248:41: warning: ‘new’ of type ‘BALL::QuaternionGene’ with extended alignment 16 [-Waligned-new=] 248 | QuaternionGene *g = new QuaternionGene; | ^~~~~~~~~~~~~~ /<>/source/DOCKING/GENETICDOCK/genes.C:248:41: note: uses ‘void* operator new(std::size_t)’, which does not have an alignment parameter /<>/source/DOCKING/GENETICDOCK/genes.C:248:41: note: use ‘-faligned-new’ to enable C++17 over-aligned new support [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticAlgorithm.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticAlgorithm.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticAlgorithm.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticAlgorithm.C.o -c /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/GENETICDOCK/dockProblem.h:13, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:10: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/matrix44.h:23, from /<>/include/BALL/MATHS/quaternion.h:8, from /<>/include/BALL/DOCKING/GENETICDOCK/genes.h:9, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h:11, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticAlgorithm.h:9, from /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:9: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C: In member function ‘bool BALL::GeneticAlgorithm::registerParameter(BALL::GenericParameter*)’: /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:474:57: warning: ‘new’ of type ‘BALL::QuaternionGene’ with extended alignment 16 [-Waligned-new=] 474 | template_individual_.insert(new QuaternionGene); | ^~~~~~~~~~~~~~ /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:474:57: note: uses ‘void* operator new(std::size_t)’, which does not have an alignment parameter /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:474:57: note: use ‘-faligned-new’ to enable C++17 over-aligned new support In file included from /usr/include/c++/12/vector:70, from /<>/include/BALL/DOCKING/GENETICDOCK/geneticIndividual.h:9: /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const BALL::GeneticIndividual&}; _Tp = BALL::GeneticIndividual; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::GeneticIndividual; _Alloc = std::allocator]’, inlined from ‘void BALL::GeneticAlgorithm::cleanPool(std::vector&)’ at /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:318:22: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void BALL::GeneticAlgorithm::select(BALL::Size)’ at /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:188:29: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = BALL::GeneticIndividual; _Alloc = std::allocator]’, inlined from ‘void BALL::GeneticAlgorithm::mate()’ at /<>/source/DOCKING/GENETICDOCK/geneticAlgorithm.C:247:17: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticIndividual.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticIndividual.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticIndividual.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/geneticIndividual.C.o -c /<>/source/DOCKING/GENETICDOCK/geneticIndividual.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/parameter.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/parameter.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/parameter.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/parameter.C.o -c /<>/source/DOCKING/GENETICDOCK/parameter.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBond.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBond.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBond.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBond.C.o -c /<>/source/DOCKING/GENETICDOCK/rotateBond.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/DOCKING/GENETICDOCK/rotateBond.C:9: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/MATHS/matrix44.h:23, from /<>/include/BALL/DOCKING/GENETICDOCK/rotateBond.h:11, from /<>/source/DOCKING/GENETICDOCK/rotateBond.C:6: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBonds.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBonds.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBonds.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/GENETICDOCK/rotateBonds.C.o -c /<>/source/DOCKING/GENETICDOCK/rotateBonds.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/KERNEL/bond.h:17, from /<>/source/DOCKING/GENETICDOCK/rotateBonds.C:7: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/source/DOCKING/GENETICDOCK/rotateBonds.C:6: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/DOCKING/IMGDOCK/IMGDock.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/DOCKING/IMGDOCK/IMGDock.C.o -MF CMakeFiles/BALL.dir/source/DOCKING/IMGDOCK/IMGDock.C.o.d -o CMakeFiles/BALL.dir/source/DOCKING/IMGDOCK/IMGDock.C.o -c /<>/source/DOCKING/IMGDOCK/IMGDock.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:14, from /<>/include/BALL/DOCKING/IMGDOCK/IMGDock.h:9, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:6: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector3.h:13, from /<>/include/BALL/DATATYPE/options.h:25, from /<>/include/BALL/DOCKING/COMMON/dockingAlgorithm.h:10: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/common.h:20, from /<>/include/BALL/DATATYPE/options.h:11: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/include/BALL/SCORING/FUNCTIONS/gridedPLP.h:10, from /<>/source/DOCKING/IMGDOCK/IMGDock.C:16: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/binaryFileAdaptor.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/binaryFileAdaptor.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/binaryFileAdaptor.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/binaryFileAdaptor.C.o -c /<>/source/SYSTEM/binaryFileAdaptor.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/directory.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/directory.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/directory.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/directory.C.o -c /<>/source/SYSTEM/directory.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/file.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/file.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/file.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/file.C.o -c /<>/source/SYSTEM/file.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/fileSystem.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/fileSystem.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/fileSystem.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/fileSystem.C.o -c /<>/source/SYSTEM/fileSystem.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/mutex.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/mutex.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/mutex.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/mutex.C.o -c /<>/source/SYSTEM/mutex.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/networking.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/networking.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/networking.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/networking.C.o -c /<>/source/SYSTEM/networking.C In file included from /usr/include/boost/bind.hpp:30, from /<>/source/SYSTEM/networking.C:5: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/path.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/path.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/path.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/path.C.o -c /<>/source/SYSTEM/path.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/simpleDownloader.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/simpleDownloader.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/simpleDownloader.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/simpleDownloader.C.o -c /<>/source/SYSTEM/simpleDownloader.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/sysinfo.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/sysinfo.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/sysinfo.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/sysinfo.C.o -c /<>/source/SYSTEM/sysinfo.C [ 90%] Building CXX object CMakeFiles/BALL.dir/source/SYSTEM/timer.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/SYSTEM/timer.C.o -MF CMakeFiles/BALL.dir/source/SYSTEM/timer.C.o.d -o CMakeFiles/BALL.dir/source/SYSTEM/timer.C.o -c /<>/source/SYSTEM/timer.C [ 95%] Building CXX object CMakeFiles/BALL.dir/source/XRAY/crystalGenerator.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/XRAY/crystalGenerator.C.o -MF CMakeFiles/BALL.dir/source/XRAY/crystalGenerator.C.o.d -o CMakeFiles/BALL.dir/source/XRAY/crystalGenerator.C.o -c /<>/source/XRAY/crystalGenerator.C In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/atomContainer.h:9, from /<>/include/BALL/XRAY/crystalGenerator.h:8, from /<>/source/XRAY/crystalGenerator.C:1: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/composite.h:13, from /<>/include/BALL/KERNEL/atom.h:9, from /<>/include/BALL/KERNEL/atomIterator.h:11: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/source/XRAY/crystalGenerator.C: In member function ‘std::__cxx11::list BALL::CrystalGenerator::generateSymMoleculesWithinDistance(float)’: /<>/source/XRAY/crystalGenerator.C:269:76: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>& BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 269 | temp_mit = mit; | ^~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Molecule; Position = BALL::BidirectionalIterator; Traits = BALL::MoleculeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>& BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator, BALL::MoleculeIteratorTraits>& BALL::ConstBidirectionalIterator, BALL::MoleculeIteratorTraits>::operator=(const BALL::ConstBidirectionalIterator, BALL::MoleculeIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator, BALL::MoleculeIteratorTraits>’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Molecule; Position = BALL::BidirectionalIterator; Traits = BALL::MoleculeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/source/XRAY/crystalGenerator.C: In member function ‘std::__cxx11::list BALL::CrystalGenerator::generateSymMoleculesWithinDistance(float)’: /<>/source/XRAY/crystalGenerator.C:269:76: note: synthesized method ‘BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>& BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>&)’ first required here 269 | temp_mit = mit; | ^~~ /<>/source/XRAY/crystalGenerator.C:272:71: warning: implicitly-declared ‘BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>& BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>::operator=(const BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>&)’ is deprecated [-Wdeprecated-copy] 272 | mit = temp_mit; | ^~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator, BALL::MoleculeIteratorTraits>’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Molecule; Position = BALL::BidirectionalIterator; Traits = BALL::MoleculeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object CMakeFiles/BALL.dir/source/XRAY/crystalInfo.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/XRAY/crystalInfo.C.o -MF CMakeFiles/BALL.dir/source/XRAY/crystalInfo.C.o.d -o CMakeFiles/BALL.dir/source/XRAY/crystalInfo.C.o -c /<>/source/XRAY/crystalInfo.C [ 95%] Building CXX object CMakeFiles/BALL.dir/source/XRAY/spaceGroupParameters.C.o /usr/bin/c++ -DBALL_EXPORTS -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_XML_LIB -I/<>/build/BALL_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/BALL.dir/source/XRAY/spaceGroupParameters.C.o -MF CMakeFiles/BALL.dir/source/XRAY/spaceGroupParameters.C.o.d -o CMakeFiles/BALL.dir/source/XRAY/spaceGroupParameters.C.o -c /<>/source/XRAY/spaceGroupParameters.C /<>/source/XRAY/spaceGroupParameters.C: In member function ‘virtual bool BALL::SpaceGroupParameters::extractSpaceGroup(BALL::Parameters&, const BALL::String&)’: 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/<>/build/include/BALL/VIEW/UIC/ui_editSingleShortcut.h /<>/source/VIEW/DIALOGS/editSingleShortcut.ui [ 66%] Generating include/BALL/VIEW/UIC/ui_editorPDBInfoDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_editorPDBInfoDialog.h /<>/source/VIEW/DIALOGS/editorPDBInfoDialog.ui [ 66%] Generating include/BALL/VIEW/UIC/ui_exportGeometryDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_exportGeometryDialog.h /<>/source/VIEW/DIALOGS/exportGeometryDialog.ui [ 66%] Generating include/BALL/VIEW/UIC/ui_fieldLinesDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_fieldLinesDialog.h /<>/source/VIEW/DIALOGS/fieldLinesDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_generateCrystalDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_generateCrystalDialog.h /<>/source/VIEW/DIALOGS/generateCrystalDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_gridColorWidget.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_gridColorWidget.h /<>/source/VIEW/DIALOGS/gridColorWidget.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_gridVisualizationDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_gridVisualizationDialog.h /<>/source/VIEW/DIALOGS/gridVisualizationDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_labelDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_labelDialog.h /<>/source/VIEW/DIALOGS/labelDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_lightSettings.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_lightSettings.h /<>/source/VIEW/DIALOGS/lightSettings.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_mainControlPreferences.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_mainControlPreferences.h /<>/source/VIEW/DIALOGS/mainControlPreferences.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_materialSettings.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_materialSettings.h /<>/source/VIEW/DIALOGS/materialSettings.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_minimizationDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_minimizationDialog.h /<>/source/VIEW/DIALOGS/minimizationDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_modelSettingsDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_modelSettingsDialog.h /<>/source/VIEW/DIALOGS/modelSettingsDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_modifyRepresentationDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_modifyRepresentationDialog.h /<>/source/VIEW/DIALOGS/modifyRepresentationDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_molecularDynamicsDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_molecularDynamicsDialog.h /<>/source/VIEW/DIALOGS/molecularDynamicsDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_networkPreferences.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_networkPreferences.h /<>/source/VIEW/DIALOGS/networkPreferences.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_openSavePreferences.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_openSavePreferences.h /<>/source/VIEW/DIALOGS/openSavePreferences.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_parsedFunctionDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_parsedFunctionDialog.h /<>/source/VIEW/DIALOGS/parsedFunctionDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_peptideDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_peptideDialog.h /<>/source/VIEW/DIALOGS/peptideDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_pluginDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_pluginDialog.h /<>/source/VIEW/DIALOGS/pluginDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_preferences.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_preferences.h /<>/source/VIEW/DIALOGS/preferences.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_propEditorWidget.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_propEditorWidget.h /<>/source/VIEW/DIALOGS/propEditorWidget.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_propertyEditor.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_propertyEditor.h /<>/source/VIEW/DIALOGS/propertyEditor.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_pubchemDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_pubchemDialog.h /<>/source/VIEW/DIALOGS/pubchemDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_raytraceableContourSurfaceDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_raytraceableContourSurfaceDialog.h /<>/source/VIEW/DIALOGS/raytraceableContourSurfaceDialog.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_setCamera.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_setCamera.h /<>/source/VIEW/DIALOGS/setCamera.ui [ 69%] Generating include/BALL/VIEW/UIC/ui_setClippingPlane.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_setClippingPlane.h /<>/source/VIEW/DIALOGS/setClippingPlane.ui [ 72%] Generating include/BALL/VIEW/UIC/ui_shortcutDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_shortcutDialog.h /<>/source/VIEW/DIALOGS/shortcutDialog.ui [ 72%] Generating include/BALL/VIEW/UIC/ui_snapShotVisualisation.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_snapShotVisualisation.h /<>/source/VIEW/DIALOGS/snapShotVisualisation.ui [ 72%] Generating include/BALL/VIEW/UIC/ui_stageSettings.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_stageSettings.h /<>/source/VIEW/DIALOGS/stageSettings.ui [ 72%] Generating include/BALL/VIEW/UIC/ui_stereoSettingsDialog.h /usr/lib/qt5/bin/uic -o /<>/build/include/BALL/VIEW/UIC/ui_stereoSettingsDialog.h /<>/source/VIEW/DIALOGS/stereoSettingsDialog.ui [ 72%] Automatic MOC for target VIEW /usr/bin/cmake -E cmake_autogen /<>/build/CMakeFiles/VIEW_autogen.dir/AutogenInfo.json Release make[5]: Leaving directory '/<>/build' [ 72%] Built target VIEW_autogen make -f CMakeFiles/VIEW.dir/build.make CMakeFiles/VIEW.dir/depend make[5]: Entering directory '/<>/build' cd /<>/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build /<>/build /<>/build/CMakeFiles/VIEW.dir/DependInfo.cmake --color= make[5]: Leaving directory '/<>/build' make -f CMakeFiles/VIEW.dir/build.make CMakeFiles/VIEW.dir/build make[5]: Entering directory '/<>/build' [ 72%] Building CXX object CMakeFiles/VIEW.dir/VIEW_autogen/mocs_compilation.cpp.o /usr/bin/c++ -DBOOST_ALL_NO_LIB -DBOOST_ATOMIC_DYN_LINK -DBOOST_CHRONO_DYN_LINK -DBOOST_DATE_TIME_DYN_LINK -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_REGEX_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SYSTEM_DYN_LINK -DBOOST_THREAD_DYN_LINK -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_POSITIONING_LIB -DQT_PRINTSUPPORT_LIB -DQT_QMLMODELS_LIB -DQT_QML_LIB -DQT_QUICK_LIB -DQT_TESTCASE_BUILDDIR=\"/<>/build\" -DQT_TESTLIB_LIB -DQT_WEBCHANNEL_LIB -DQT_WEBENGINECORE_LIB -DQT_WEBENGINEWIDGETS_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DVIEW_EXPORTS -I/<>/build/VIEW_autogen/include -I/<>/include -I/<>/build/include -I/usr/include/eigen3 -isystem /usr/include/arm-linux-gnueabihf/qt5 -isystem /usr/include/arm-linux-gnueabihf/qt5/QtCore -isystem /usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/arm-linux-gnueabihf/qt5/QtNetwork -isystem /usr/include/arm-linux-gnueabihf/qt5/QtXml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtOpenGL -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtGui -isystem /usr/include/arm-linux-gnueabihf/qt5/QtPrintSupport -isystem /usr/include/arm-linux-gnueabihf/qt5/QtTest -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWebEngineWidgets -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWebEngineCore -isystem /usr/include/arm-linux-gnueabihf/qt5/QtQuick -isystem /usr/include/arm-linux-gnueabihf/qt5/QtQmlModels -isystem /usr/include/arm-linux-gnueabihf/qt5/QtQml -isystem /usr/include/arm-linux-gnueabihf/qt5/QtWebChannel -isystem /usr/include/arm-linux-gnueabihf/qt5/QtPositioning -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/ball-1.5.0+git20180813.37fc53c-11 -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/tirpc -Wall -Wextra -Wno-deprecated-declarations -std=c++0x -pedantic -O3 -DNDEBUG -fPIC -fPIC -MD -MT CMakeFiles/VIEW.dir/VIEW_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VIEW.dir/VIEW_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VIEW.dir/VIEW_autogen/mocs_compilation.cpp.o -c /<>/build/VIEW_autogen/mocs_compilation.cpp In file included from /<>/include/BALL/KERNEL/atomIterator.h:15, from /<>/include/BALL/KERNEL/system.h:9, from /<>/include/BALL/SOLVATION/poissonBoltzmann.h:21, from /<>/build/VIEW_autogen/OR3C44JOXY/../../../include/BALL/VIEW/DIALOGS/FDPBDialog.h:20, from /<>/build/VIEW_autogen/OR3C44JOXY/moc_FDPBDialog.cpp:10, from /<>/build/VIEW_autogen/mocs_compilation.cpp:4: /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/CONCEPT/object.h:17, from /<>/include/BALL/CONCEPT/persistentObject.h:9, from /<>/include/BALL/CONCEPT/persistenceManager.h:25, from /<>/include/BALL/MATHS/vector2.h:9, from /<>/include/BALL/DATATYPE/regularData2D.h:9, from /<>/build/VIEW_autogen/2AM2ODBFSX/../../../include/BALL/VIEW/DATATYPE/standardDatasets.h:17, from /<>/build/VIEW_autogen/2AM2ODBFSX/moc_standardDatasets.cpp:10, from /<>/build/VIEW_autogen/mocs_compilation.cpp:3: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h: In member function ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’: /<>/include/BALL/CONCEPT/bidirectionalIterator.h:258:15: warning: implicitly-declared ‘BALL::ConstBidirectionalIterator& BALL::ConstBidirectionalIterator::operator=(const BALL::ConstBidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 258 | class BidirectionalIterator | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:46:29: note: because ‘BALL::ConstBidirectionalIterator’ has user-provided ‘BALL::ConstBidirectionalIterator::ConstBidirectionalIterator(const BALL::ConstBidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 46 | BALL_INLINE ConstBidirectionalIterator(const ConstBidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘BALL::CompositeIteratorTraits& BALL::CompositeIteratorTraits::operator=(const BALL::CompositeIteratorTraits&)’: /<>/include/BALL/KERNEL/iterator.h:262:46: note: synthesized method ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ first required here 262 | composite_iterator_ = traits.composite_iterator_; | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toBegin()’: /<>/include/BALL/KERNEL/iterator.h:286:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 286 | composite_iterator_ = bound_->beginComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/KERNEL/iterator.h: In member function ‘void BALL::CompositeIteratorTraits::toRBegin()’: /<>/include/BALL/KERNEL/iterator.h:343:62: warning: implicitly-declared ‘BALL::BidirectionalIterator& BALL::BidirectionalIterator::operator=(const BALL::BidirectionalIterator&)’ is deprecated [-Wdeprecated-copy] 343 | composite_iterator_ = --bound_->endComposite(); | ^ /<>/include/BALL/CONCEPT/bidirectionalIterator.h:283:29: note: because ‘BALL::BidirectionalIterator’ has user-provided ‘BALL::BidirectionalIterator::BidirectionalIterator(const BALL::BidirectionalIterator&) [with Container = BALL::Composite; DataType = BALL::Composite; Position = BALL::Composite*; Traits = BALL::Composite::CompositeIteratorTraits]’ 283 | BALL_INLINE BidirectionalIterator(const BidirectionalIterator& iterator) | ^~~~~~~~~~~~~~~~~~~~~ In file included from /<>/build/VIEW_autogen/OR3C44JOXY/../../../include/BALL/VIEW/DIALOGS/labelDialog.h:21, from /<>/build/VIEW_autogen/OR3C44JOXY/moc_labelDialog.cpp:10, from /<>/build/VIEW_autogen/mocs_compilation.cpp:29: /<>/include/BALL/VIEW/KERNEL/message.h: In member function ‘void BALL::VIEW::SceneMessage::setStage(BALL::VIEW::Stage)’: /<>/include/BALL/VIEW/KERNEL/message.h:409:29: warning: implicitly-declared ‘BALL::VIEW::Stage& BALL::VIEW::Stage::operator=(const BALL::VIEW::Stage&)’ is deprecated [-Wdeprecated-copy] 409 | { stage_ = stage;} | ^~~~~ In file included from /<>/include/BALL/VIEW/KERNEL/message.h:9: /<>/include/BALL/VIEW/KERNEL/stage.h:301:25: note: because ‘BALL::VIEW::Stage’ has user-provided ‘BALL::VIEW::Stage::Stage(const BALL::VIEW::Stage&)’ 301 | Stage(const Stage& stage); | ^~~~~ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtGui/qopengl.h:105, from /usr/include/arm-linux-gnueabihf/qt5/QtOpenGL/qgl.h:45, from /<>/include/BALL/VIEW/RENDERING/glDisplayList.h:13, from /<>/include/BALL/VIEW/RENDERING/RENDERERS/glRenderer.h:39, from /<>/include/BALL/VIEW/RENDERING/renderSetup.h:9, from /<>/build/VIEW_autogen/OR3C44JOXY/../../../include/BALL/VIEW/DIALOGS/stageSettings.h:21, from /<>/build/VIEW_autogen/OR3C44JOXY/moc_stageSettings.cpp:10, from /<>/build/VIEW_autogen/mocs_compilation.cpp:51: /usr/include/GLES3/gl32.h: At global scope: /usr/include/GLES3/gl32.h:77:25: error: conflicting declaration ‘typedef khronos_ssize_t GLsizeiptr’ 77 | typedef khronos_ssize_t GLsizeiptr; | ^~~~~~~~~~ In file included from /<>/include/BALL/VIEW/RENDERING/RENDERERS/glRenderer.h:29: /usr/include/GL/glew.h:1694:19: note: previous declaration as ‘typedef ptrdiff_t GLsizeiptr’ 1694 | typedef ptrdiff_t GLsizeiptr; | ^~~~~~~~~~ /usr/include/GLES3/gl32.h:78:26: error: conflicting declaration ‘typedef khronos_intptr_t GLintptr’ 78 | typedef khronos_intptr_t GLintptr; | ^~~~~~~~ /usr/include/GL/glew.h:1693:19: note: previous declaration as ‘typedef ptrdiff_t GLintptr’ 1693 | typedef ptrdiff_t GLintptr; | ^~~~~~~~ /usr/include/GLES3/gl32.h:528:60: error: ‘void __glewActiveTexture(GLenum)’ redeclared as different kind of entity 528 | GL_APICALL void GL_APIENTRY glActiveTexture (GLenum texture); | ^ /usr/include/GL/glew.h:22286:40: note: previous declaration ‘void (* __glewActiveTexture)(GLenum)’ 22286 | GLEW_FUN_EXPORT PFNGLACTIVETEXTUREPROC __glewActiveTexture; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:529:74: error: ‘void __glewAttachShader(GLuint, GLuint)’ redeclared as different kind of entity 529 | GL_APICALL void GL_APIENTRY glAttachShader (GLuint program, GLuint shader); | ^ /usr/include/GL/glew.h:22401:39: note: previous declaration ‘void (* __glewAttachShader)(GLuint, GLuint)’ 22401 | GLEW_FUN_EXPORT PFNGLATTACHSHADERPROC __glewAttachShader; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:530:99: error: ‘void __glewBindAttribLocation(GLuint, GLuint, const GLchar*)’ redeclared as different kind of entity 530 | GL_APICALL void GL_APIENTRY glBindAttribLocation (GLuint program, GLuint index, const GLchar *name); | ^ /usr/include/GL/glew.h:22402:45: note: previous declaration ‘void (* __glewBindAttribLocation)(GLuint, GLuint, const GLchar*)’ 22402 | GLEW_FUN_EXPORT PFNGLBINDATTRIBLOCATIONPROC __glewBindAttribLocation; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:531:71: error: ‘void __glewBindBuffer(GLenum, GLuint)’ redeclared as different kind of entity 531 | GL_APICALL void GL_APIENTRY glBindBuffer (GLenum target, GLuint buffer); | ^ /usr/include/GL/glew.h:22382:37: note: previous declaration ‘void (* __glewBindBuffer)(GLenum, GLuint)’ 22382 | GLEW_FUN_EXPORT PFNGLBINDBUFFERPROC __glewBindBuffer; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:532:81: error: ‘void __glewBindFramebuffer(GLenum, GLuint)’ redeclared as different kind of entity 532 | GL_APICALL void GL_APIENTRY glBindFramebuffer (GLenum target, GLuint framebuffer); | ^ /usr/include/GL/glew.h:22896:42: note: previous declaration ‘void (* __glewBindFramebuffer)(GLenum, GLuint)’ 22896 | GLEW_FUN_EXPORT PFNGLBINDFRAMEBUFFERPROC __glewBindFramebuffer; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:533:83: error: ‘void __glewBindRenderbuffer(GLenum, GLuint)’ redeclared as different kind of entity 533 | GL_APICALL void GL_APIENTRY glBindRenderbuffer (GLenum target, GLuint renderbuffer); | ^ /usr/include/GL/glew.h:22897:43: note: previous declaration ‘void (* __glewBindRenderbuffer)(GLenum, GLuint)’ 22897 | GLEW_FUN_EXPORT PFNGLBINDRENDERBUFFERPROC __glewBindRenderbuffer; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:535:98: error: ‘void __glewBlendColor(GLfloat, GLfloat, GLfloat, GLfloat)’ redeclared as different kind of entity 535 | GL_APICALL void GL_APIENTRY glBlendColor (GLfloat red, GLfloat green, GLfloat blue, GLfloat alpha); | ^ /usr/include/GL/glew.h:22333:37: note: previous declaration ‘void (* __glewBlendColor)(GLclampf, GLclampf, GLclampf, GLclampf)’ 22333 | GLEW_FUN_EXPORT PFNGLBLENDCOLORPROC __glewBlendColor; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:536:57: error: ‘void __glewBlendEquation(GLenum)’ redeclared as different kind of entity 536 | GL_APICALL void GL_APIENTRY glBlendEquation (GLenum mode); | ^ /usr/include/GL/glew.h:22334:40: note: previous declaration ‘void (* __glewBlendEquation)(GLenum)’ 22334 | GLEW_FUN_EXPORT PFNGLBLENDEQUATIONPROC __glewBlendEquation; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:537:86: error: ‘void __glewBlendEquationSeparate(GLenum, GLenum)’ redeclared as different kind of entity 537 | GL_APICALL void GL_APIENTRY glBlendEquationSeparate (GLenum modeRGB, GLenum modeAlpha); | ^ /usr/include/GL/glew.h:22403:48: note: previous declaration ‘void (* __glewBlendEquationSeparate)(GLenum, GLenum)’ 22403 | GLEW_FUN_EXPORT PFNGLBLENDEQUATIONSEPARATEPROC __glewBlendEquationSeparate; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:539:128: error: ‘void __glewBlendFuncSeparate(GLenum, GLenum, GLenum, GLenum)’ redeclared as different kind of entity 539 | GL_APICALL void GL_APIENTRY glBlendFuncSeparate (GLenum sfactorRGB, GLenum dfactorRGB, GLenum sfactorAlpha, GLenum dfactorAlpha); | ^ /usr/include/GL/glew.h:22335:44: note: previous declaration ‘void (* __glewBlendFuncSeparate)(GLenum, GLenum, GLenum, GLenum)’ 22335 | GLEW_FUN_EXPORT PFNGLBLENDFUNCSEPARATEPROC __glewBlendFuncSeparate; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:540:105: error: ‘void __glewBufferData(GLenum, GLsizeiptr, const void*, GLenum)’ redeclared as different kind of entity 540 | GL_APICALL void GL_APIENTRY glBufferData (GLenum target, GLsizeiptr size, const void *data, GLenum usage); | ^ /usr/include/GL/glew.h:22383:37: note: previous declaration ‘void (* __glewBufferData)(GLenum, GLsizeiptr, const void*, GLenum)’ 22383 | GLEW_FUN_EXPORT PFNGLBUFFERDATAPROC __glewBufferData; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:541:111: error: ‘void __glewBufferSubData(GLenum, GLintptr, GLsizeiptr, const void*)’ redeclared as different kind of entity 541 | GL_APICALL void GL_APIENTRY glBufferSubData (GLenum target, GLintptr offset, GLsizeiptr size, const void *data); | ^ /usr/include/GL/glew.h:22384:40: note: previous declaration ‘void (* __glewBufferSubData)(GLenum, GLintptr, GLsizeiptr, const void*)’ 22384 | GLEW_FUN_EXPORT PFNGLBUFFERSUBDATAPROC __glewBufferSubData; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:542:70: error: ‘GLenum __glewCheckFramebufferStatus(GLenum)’ redeclared as different kind of entity 542 | GL_APICALL GLenum GL_APIENTRY glCheckFramebufferStatus (GLenum target); | ^ /usr/include/GL/glew.h:22899:49: note: previous declaration ‘GLenum (* __glewCheckFramebufferStatus)(GLenum)’ 22899 | GLEW_FUN_EXPORT PFNGLCHECKFRAMEBUFFERSTATUSPROC __glewCheckFramebufferStatus; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:545:53: error: ‘void __glewClearDepthf(GLfloat)’ redeclared as different kind of entity 545 | GL_APICALL void GL_APIENTRY glClearDepthf (GLfloat d); | ^ /usr/include/GL/glew.h:22714:38: note: previous declaration ‘void (* __glewClearDepthf)(GLclampf)’ 22714 | GLEW_FUN_EXPORT PFNGLCLEARDEPTHFPROC __glewClearDepthf; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:548:59: error: ‘void __glewCompileShader(GLuint)’ redeclared as different kind of entity 548 | GL_APICALL void GL_APIENTRY glCompileShader (GLuint shader); | ^ /usr/include/GL/glew.h:22404:40: note: previous declaration ‘void (* __glewCompileShader)(GLuint)’ 22404 | GLEW_FUN_EXPORT PFNGLCOMPILESHADERPROC __glewCompileShader; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:549:184: error: ‘void __glewCompressedTexImage2D(GLenum, GLint, GLenum, GLsizei, GLsizei, GLint, GLsizei, const void*)’ redeclared as different kind of entity 549 | GL_APICALL void GL_APIENTRY glCompressedTexImage2D (GLenum target, GLint level, GLenum internalformat, GLsizei width, GLsizei height, GLint border, GLsizei imageSize, const void *data); | ^ /usr/include/GL/glew.h:22289:47: note: previous declaration ‘void (* __glewCompressedTexImage2D)(GLenum, GLint, GLenum, GLsizei, GLsizei, GLint, GLsizei, const void*)’ 22289 | GLEW_FUN_EXPORT PFNGLCOMPRESSEDTEXIMAGE2DPROC __glewCompressedTexImage2D; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:550:195: error: ‘void __glewCompressedTexSubImage2D(GLenum, GLint, GLint, GLint, GLsizei, GLsizei, GLenum, GLsizei, const void*)’ redeclared as different kind of entity 550 | GL_APICALL void GL_APIENTRY glCompressedTexSubImage2D (GLenum target, GLint level, GLint xoffset, GLint yoffset, GLsizei width, GLsizei height, GLenum format, GLsizei imageSize, const void *data); | ^ /usr/include/GL/glew.h:22292:50: note: previous declaration ‘void (* __glewCompressedTexSubImage2D)(GLenum, GLint, GLint, GLint, GLsizei, GLsizei, GLenum, GLsizei, const void*)’ 22292 | GLEW_FUN_EXPORT PFNGLCOMPRESSEDTEXSUBIMAGE2DPROC __glewCompressedTexSubImage2D; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:553:52: error: ‘GLuint __glewCreateProgram()’ redeclared as different kind of entity 553 | GL_APICALL GLuint GL_APIENTRY glCreateProgram (void); | ^ /usr/include/GL/glew.h:22405:40: note: previous declaration ‘GLuint (* __glewCreateProgram)()’ 22405 | GLEW_FUN_EXPORT PFNGLCREATEPROGRAMPROC __glewCreateProgram; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:554:58: error: ‘GLuint __glewCreateShader(GLenum)’ redeclared as different kind of entity 554 | GL_APICALL GLuint GL_APIENTRY glCreateShader (GLenum type); | ^ /usr/include/GL/glew.h:22406:39: note: previous declaration ‘GLuint (* __glewCreateShader)(GLenum)’ 22406 | GLEW_FUN_EXPORT PFNGLCREATESHADERPROC __glewCreateShader; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:556:78: error: ‘void __glewDeleteBuffers(GLsizei, const GLuint*)’ redeclared as different kind of entity 556 | GL_APICALL void GL_APIENTRY glDeleteBuffers (GLsizei n, const GLuint *buffers); | ^ /usr/include/GL/glew.h:22385:40: note: previous declaration ‘void (* __glewDeleteBuffers)(GLsizei, const GLuint*)’ 22385 | GLEW_FUN_EXPORT PFNGLDELETEBUFFERSPROC __glewDeleteBuffers; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:557:88: error: ‘void __glewDeleteFramebuffers(GLsizei, const GLuint*)’ redeclared as different kind of entity 557 | GL_APICALL void GL_APIENTRY glDeleteFramebuffers (GLsizei n, const GLuint *framebuffers); | ^ /usr/include/GL/glew.h:22900:45: note: previous declaration ‘void (* __glewDeleteFramebuffers)(GLsizei, const GLuint*)’ 22900 | GLEW_FUN_EXPORT PFNGLDELETEFRAMEBUFFERSPROC __glewDeleteFramebuffers; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:558:60: error: ‘void __glewDeleteProgram(GLuint)’ redeclared as different kind of entity 558 | GL_APICALL void GL_APIENTRY glDeleteProgram (GLuint program); | ^ /usr/include/GL/glew.h:22407:40: note: previous declaration ‘void (* __glewDeleteProgram)(GLuint)’ 22407 | GLEW_FUN_EXPORT PFNGLDELETEPROGRAMPROC __glewDeleteProgram; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:559:90: error: ‘void __glewDeleteRenderbuffers(GLsizei, const GLuint*)’ redeclared as different kind of entity 559 | GL_APICALL void GL_APIENTRY glDeleteRenderbuffers (GLsizei n, const GLuint *renderbuffers); | ^ /usr/include/GL/glew.h:22901:46: note: previous declaration ‘void (* __glewDeleteRenderbuffers)(GLsizei, const GLuint*)’ 22901 | GLEW_FUN_EXPORT PFNGLDELETERENDERBUFFERSPROC __glewDeleteRenderbuffers; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:560:58: error: ‘void __glewDeleteShader(GLuint)’ redeclared as different kind of entity 560 | GL_APICALL void GL_APIENTRY glDeleteShader (GLuint shader); | ^ /usr/include/GL/glew.h:22408:39: note: previous declaration ‘void (* __glewDeleteShader)(GLuint)’ 22408 | GLEW_FUN_EXPORT PFNGLDELETESHADERPROC __glewDeleteShader; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:564:64: error: ‘void __glewDepthRangef(GLfloat, GLfloat)’ redeclared as different kind of entity 564 | GL_APICALL void GL_APIENTRY glDepthRangef (GLfloat n, GLfloat f); | ^ /usr/include/GL/glew.h:22715:38: note: previous declaration ‘void (* __glewDepthRangef)(GLclampf, GLclampf)’ 22715 | GLEW_FUN_EXPORT PFNGLDEPTHRANGEFPROC __glewDepthRangef; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:565:74: error: ‘void __glewDetachShader(GLuint, GLuint)’ redeclared as different kind of entity 565 | GL_APICALL void GL_APIENTRY glDetachShader (GLuint program, GLuint shader); | ^ /usr/include/GL/glew.h:22409:39: note: previous declaration ‘void (* __glewDetachShader)(GLuint, GLuint)’ 22409 | GLEW_FUN_EXPORT PFNGLDETACHSHADERPROC __glewDetachShader; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:567:69: error: ‘void __glewDisableVertexAttribArray(GLuint)’ redeclared as different kind of entity 567 | GL_APICALL void GL_APIENTRY glDisableVertexAttribArray (GLuint index); | ^ /usr/include/GL/glew.h:22410:51: note: previous declaration ‘void (* __glewDisableVertexAttribArray)(GLuint)’ 22410 | GLEW_FUN_EXPORT PFNGLDISABLEVERTEXATTRIBARRAYPROC __glewDisableVertexAttribArray; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:571:68: error: ‘void __glewEnableVertexAttribArray(GLuint)’ redeclared as different kind of entity 571 | GL_APICALL void GL_APIENTRY glEnableVertexAttribArray (GLuint index); | ^ /usr/include/GL/glew.h:22412:50: note: previous declaration ‘void (* __glewEnableVertexAttribArray)(GLuint)’ 22412 | GLEW_FUN_EXPORT PFNGLENABLEVERTEXATTRIBARRAYPROC __glewEnableVertexAttribArray; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:574:136: error: ‘void __glewFramebufferRenderbuffer(GLenum, GLenum, GLenum, GLuint)’ redeclared as different kind of entity 574 | GL_APICALL void GL_APIENTRY glFramebufferRenderbuffer (GLenum target, GLenum attachment, GLenum renderbuffertarget, GLuint renderbuffer); | ^ /usr/include/GL/glew.h:22902:50: note: previous declaration ‘void (* __glewFramebufferRenderbuffer)(GLenum, GLenum, GLenum, GLuint)’ 22902 | GLEW_FUN_EXPORT PFNGLFRAMEBUFFERRENDERBUFFERPROC __glewFramebufferRenderbuffer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:575:132: error: ‘void __glewFramebufferTexture2D(GLenum, GLenum, GLenum, GLuint, GLint)’ redeclared as different kind of entity 575 | GL_APICALL void GL_APIENTRY glFramebufferTexture2D (GLenum target, GLenum attachment, GLenum textarget, GLuint texture, GLint level); | ^ /usr/include/GL/glew.h:22904:47: note: previous declaration ‘void (* __glewFramebufferTexture2D)(GLenum, GLenum, GLenum, GLuint, GLint)’ 22904 | GLEW_FUN_EXPORT PFNGLFRAMEBUFFERTEXTURE2DPROC __glewFramebufferTexture2D; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:577:69: error: ‘void __glewGenBuffers(GLsizei, GLuint*)’ redeclared as different kind of entity 577 | GL_APICALL void GL_APIENTRY glGenBuffers (GLsizei n, GLuint *buffers); | ^ /usr/include/GL/glew.h:22388:37: note: previous declaration ‘void (* __glewGenBuffers)(GLsizei, GLuint*)’ 22388 | GLEW_FUN_EXPORT PFNGLGENBUFFERSPROC __glewGenBuffers; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:578:60: error: ‘void __glewGenerateMipmap(GLenum)’ redeclared as different kind of entity 578 | GL_APICALL void GL_APIENTRY glGenerateMipmap (GLenum target); | ^ /usr/include/GL/glew.h:22909:41: note: previous declaration ‘void (* __glewGenerateMipmap)(GLenum)’ 22909 | GLEW_FUN_EXPORT PFNGLGENERATEMIPMAPPROC __glewGenerateMipmap; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:579:79: error: ‘void __glewGenFramebuffers(GLsizei, GLuint*)’ redeclared as different kind of entity 579 | GL_APICALL void GL_APIENTRY glGenFramebuffers (GLsizei n, GLuint *framebuffers); | ^ /usr/include/GL/glew.h:22907:42: note: previous declaration ‘void (* __glewGenFramebuffers)(GLsizei, GLuint*)’ 22907 | GLEW_FUN_EXPORT PFNGLGENFRAMEBUFFERSPROC __glewGenFramebuffers; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:580:81: error: ‘void __glewGenRenderbuffers(GLsizei, GLuint*)’ redeclared as different kind of entity 580 | GL_APICALL void GL_APIENTRY glGenRenderbuffers (GLsizei n, GLuint *renderbuffers); | ^ /usr/include/GL/glew.h:22908:43: note: previous declaration ‘void (* __glewGenRenderbuffers)(GLsizei, GLuint*)’ 22908 | GLEW_FUN_EXPORT PFNGLGENRENDERBUFFERSPROC __glewGenRenderbuffers; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:582:151: error: ‘void __glewGetActiveAttrib(GLuint, GLuint, GLsizei, GLsizei*, GLint*, GLenum*, GLchar*)’ redeclared as different kind of entity 582 | GL_APICALL void GL_APIENTRY glGetActiveAttrib (GLuint program, GLuint index, GLsizei bufSize, GLsizei *length, GLint *size, GLenum *type, GLchar *name); | ^ /usr/include/GL/glew.h:22413:42: note: previous declaration ‘void (* __glewGetActiveAttrib)(GLuint, GLuint, GLsizei, GLsizei*, GLint*, GLenum*, GLchar*)’ 22413 | GLEW_FUN_EXPORT PFNGLGETACTIVEATTRIBPROC __glewGetActiveAttrib; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:583:152: error: ‘void __glewGetActiveUniform(GLuint, GLuint, GLsizei, GLsizei*, GLint*, GLenum*, GLchar*)’ redeclared as different kind of entity 583 | GL_APICALL void GL_APIENTRY glGetActiveUniform (GLuint program, GLuint index, GLsizei bufSize, GLsizei *length, GLint *size, GLenum *type, GLchar *name); | ^ /usr/include/GL/glew.h:22414:43: note: previous declaration ‘void (* __glewGetActiveUniform)(GLuint, GLuint, GLsizei, GLsizei*, GLint*, GLenum*, GLchar*)’ 22414 | GLEW_FUN_EXPORT PFNGLGETACTIVEUNIFORMPROC __glewGetActiveUniform; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:584:116: error: ‘void __glewGetAttachedShaders(GLuint, GLsizei, GLsizei*, GLuint*)’ redeclared as different kind of entity 584 | GL_APICALL void GL_APIENTRY glGetAttachedShaders (GLuint program, GLsizei maxCount, GLsizei *count, GLuint *shaders); | ^ /usr/include/GL/glew.h:22415:45: note: previous declaration ‘void (* __glewGetAttachedShaders)(GLuint, GLsizei, GLsizei*, GLuint*)’ 22415 | GLEW_FUN_EXPORT PFNGLGETATTACHEDSHADERSPROC __glewGetAttachedShaders; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:585:85: error: ‘GLint __glewGetAttribLocation(GLuint, const GLchar*)’ redeclared as different kind of entity 585 | GL_APICALL GLint GL_APIENTRY glGetAttribLocation (GLuint program, const GLchar *name); | ^ /usr/include/GL/glew.h:22416:44: note: previous declaration ‘GLint (* __glewGetAttribLocation)(GLuint, const GLchar*)’ 22416 | GLEW_FUN_EXPORT PFNGLGETATTRIBLOCATIONPROC __glewGetAttribLocation; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:587:95: error: ‘void __glewGetBufferParameteriv(GLenum, GLenum, GLint*)’ redeclared as different kind of entity 587 | GL_APICALL void GL_APIENTRY glGetBufferParameteriv (GLenum target, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22390:47: note: previous declaration ‘void (* __glewGetBufferParameteriv)(GLenum, GLenum, GLint*)’ 22390 | GLEW_FUN_EXPORT PFNGLGETBUFFERPARAMETERIVPROC __glewGetBufferParameteriv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:590:129: error: ‘void __glewGetFramebufferAttachmentParameteriv(GLenum, GLenum, GLenum, GLint*)’ redeclared as different kind of entity 590 | GL_APICALL void GL_APIENTRY glGetFramebufferAttachmentParameteriv (GLenum target, GLenum attachment, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22910:62: note: previous declaration ‘void (* __glewGetFramebufferAttachmentParameteriv)(GLenum, GLenum, GLenum, GLint*)’ 22910 | GLEW_FUN_EXPORT PFNGLGETFRAMEBUFFERATTACHMENTPARAMETERIVPROC __glewGetFramebufferAttachmentParameteriv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:592:88: error: ‘void __glewGetProgramiv(GLuint, GLenum, GLint*)’ redeclared as different kind of entity 592 | GL_APICALL void GL_APIENTRY glGetProgramiv (GLuint program, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22418:39: note: previous declaration ‘void (* __glewGetProgramiv)(GLuint, GLenum, GLint*)’ 22418 | GLEW_FUN_EXPORT PFNGLGETPROGRAMIVPROC __glewGetProgramiv; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:593:115: error: ‘void __glewGetProgramInfoLog(GLuint, GLsizei, GLsizei*, GLchar*)’ redeclared as different kind of entity 593 | GL_APICALL void GL_APIENTRY glGetProgramInfoLog (GLuint program, GLsizei bufSize, GLsizei *length, GLchar *infoLog); | ^ /usr/include/GL/glew.h:22417:44: note: previous declaration ‘void (* __glewGetProgramInfoLog)(GLuint, GLsizei, GLsizei*, GLchar*)’ 22417 | GLEW_FUN_EXPORT PFNGLGETPROGRAMINFOLOGPROC __glewGetProgramInfoLog; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:594:101: error: ‘void __glewGetRenderbufferParameteriv(GLenum, GLenum, GLint*)’ redeclared as different kind of entity 594 | GL_APICALL void GL_APIENTRY glGetRenderbufferParameteriv (GLenum target, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22911:53: note: previous declaration ‘void (* __glewGetRenderbufferParameteriv)(GLenum, GLenum, GLint*)’ 22911 | GLEW_FUN_EXPORT PFNGLGETRENDERBUFFERPARAMETERIVPROC __glewGetRenderbufferParameteriv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:595:86: error: ‘void __glewGetShaderiv(GLuint, GLenum, GLint*)’ redeclared as different kind of entity 595 | GL_APICALL void GL_APIENTRY glGetShaderiv (GLuint shader, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22421:38: note: previous declaration ‘void (* __glewGetShaderiv)(GLuint, GLenum, GLint*)’ 22421 | GLEW_FUN_EXPORT PFNGLGETSHADERIVPROC __glewGetShaderiv; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:596:113: error: ‘void __glewGetShaderInfoLog(GLuint, GLsizei, GLsizei*, GLchar*)’ redeclared as different kind of entity 596 | GL_APICALL void GL_APIENTRY glGetShaderInfoLog (GLuint shader, GLsizei bufSize, GLsizei *length, GLchar *infoLog); | ^ /usr/include/GL/glew.h:22419:43: note: previous declaration ‘void (* __glewGetShaderInfoLog)(GLuint, GLsizei, GLsizei*, GLchar*)’ 22419 | GLEW_FUN_EXPORT PFNGLGETSHADERINFOLOGPROC __glewGetShaderInfoLog; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:597:128: error: ‘void __glewGetShaderPrecisionFormat(GLenum, GLenum, GLint*, GLint*)’ redeclared as different kind of entity 597 | GL_APICALL void GL_APIENTRY glGetShaderPrecisionFormat (GLenum shadertype, GLenum precisiontype, GLint *range, GLint *precision); | ^ /usr/include/GL/glew.h:22716:51: note: previous declaration ‘void (* __glewGetShaderPrecisionFormat)(GLenum, GLenum, GLint*, GLint*)’ 22716 | GLEW_FUN_EXPORT PFNGLGETSHADERPRECISIONFORMATPROC __glewGetShaderPrecisionFormat; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:598:111: error: ‘void __glewGetShaderSource(GLuint, GLsizei, GLsizei*, GLchar*)’ redeclared as different kind of entity 598 | GL_APICALL void GL_APIENTRY glGetShaderSource (GLuint shader, GLsizei bufSize, GLsizei *length, GLchar *source); | ^ /usr/include/GL/glew.h:22420:42: note: previous declaration ‘void (* __glewGetShaderSource)(GLuint, GLsizei, GLsizei*, GLchar*)’ 22420 | GLEW_FUN_EXPORT PFNGLGETSHADERSOURCEPROC __glewGetShaderSource; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:602:92: error: ‘void __glewGetUniformfv(GLuint, GLint, GLfloat*)’ redeclared as different kind of entity 602 | GL_APICALL void GL_APIENTRY glGetUniformfv (GLuint program, GLint location, GLfloat *params); | ^ /usr/include/GL/glew.h:22423:39: note: previous declaration ‘void (* __glewGetUniformfv)(GLuint, GLint, GLfloat*)’ 22423 | GLEW_FUN_EXPORT PFNGLGETUNIFORMFVPROC __glewGetUniformfv; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:603:90: error: ‘void __glewGetUniformiv(GLuint, GLint, GLint*)’ redeclared as different kind of entity 603 | GL_APICALL void GL_APIENTRY glGetUniformiv (GLuint program, GLint location, GLint *params); | ^ /usr/include/GL/glew.h:22424:39: note: previous declaration ‘void (* __glewGetUniformiv)(GLuint, GLint, GLint*)’ 22424 | GLEW_FUN_EXPORT PFNGLGETUNIFORMIVPROC __glewGetUniformiv; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:604:86: error: ‘GLint __glewGetUniformLocation(GLuint, const GLchar*)’ redeclared as different kind of entity 604 | GL_APICALL GLint GL_APIENTRY glGetUniformLocation (GLuint program, const GLchar *name); | ^ /usr/include/GL/glew.h:22422:45: note: previous declaration ‘GLint (* __glewGetUniformLocation)(GLuint, const GLchar*)’ 22422 | GLEW_FUN_EXPORT PFNGLGETUNIFORMLOCATIONPROC __glewGetUniformLocation; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:605:93: error: ‘void __glewGetVertexAttribfv(GLuint, GLenum, GLfloat*)’ redeclared as different kind of entity 605 | GL_APICALL void GL_APIENTRY glGetVertexAttribfv (GLuint index, GLenum pname, GLfloat *params); | ^ /usr/include/GL/glew.h:22427:44: note: previous declaration ‘void (* __glewGetVertexAttribfv)(GLuint, GLenum, GLfloat*)’ 22427 | GLEW_FUN_EXPORT PFNGLGETVERTEXATTRIBFVPROC __glewGetVertexAttribfv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:606:91: error: ‘void __glewGetVertexAttribiv(GLuint, GLenum, GLint*)’ redeclared as different kind of entity 606 | GL_APICALL void GL_APIENTRY glGetVertexAttribiv (GLuint index, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22428:44: note: previous declaration ‘void (* __glewGetVertexAttribiv)(GLuint, GLenum, GLint*)’ 22428 | GLEW_FUN_EXPORT PFNGLGETVERTEXATTRIBIVPROC __glewGetVertexAttribiv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:607:98: error: ‘void __glewGetVertexAttribPointerv(GLuint, GLenum, void**)’ redeclared as different kind of entity 607 | GL_APICALL void GL_APIENTRY glGetVertexAttribPointerv (GLuint index, GLenum pname, void **pointer); | ^ /usr/include/GL/glew.h:22425:50: note: previous declaration ‘void (* __glewGetVertexAttribPointerv)(GLuint, GLenum, void**)’ 22425 | GLEW_FUN_EXPORT PFNGLGETVERTEXATTRIBPOINTERVPROC __glewGetVertexAttribPointerv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:609:59: error: ‘GLboolean __glewIsBuffer(GLuint)’ redeclared as different kind of entity 609 | GL_APICALL GLboolean GL_APIENTRY glIsBuffer (GLuint buffer); | ^ /usr/include/GL/glew.h:22396:35: note: previous declaration ‘GLboolean (* __glewIsBuffer)(GLuint)’ 22396 | GLEW_FUN_EXPORT PFNGLISBUFFERPROC __glewIsBuffer; | ^~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:611:69: error: ‘GLboolean __glewIsFramebuffer(GLuint)’ redeclared as different kind of entity 611 | GL_APICALL GLboolean GL_APIENTRY glIsFramebuffer (GLuint framebuffer); | ^ /usr/include/GL/glew.h:22912:40: note: previous declaration ‘GLboolean (* __glewIsFramebuffer)(GLuint)’ 22912 | GLEW_FUN_EXPORT PFNGLISFRAMEBUFFERPROC __glewIsFramebuffer; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:612:61: error: ‘GLboolean __glewIsProgram(GLuint)’ redeclared as different kind of entity 612 | GL_APICALL GLboolean GL_APIENTRY glIsProgram (GLuint program); | ^ /usr/include/GL/glew.h:22429:36: note: previous declaration ‘GLboolean (* __glewIsProgram)(GLuint)’ 22429 | GLEW_FUN_EXPORT PFNGLISPROGRAMPROC __glewIsProgram; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:613:71: error: ‘GLboolean __glewIsRenderbuffer(GLuint)’ redeclared as different kind of entity 613 | GL_APICALL GLboolean GL_APIENTRY glIsRenderbuffer (GLuint renderbuffer); | ^ /usr/include/GL/glew.h:22913:41: note: previous declaration ‘GLboolean (* __glewIsRenderbuffer)(GLuint)’ 22913 | GLEW_FUN_EXPORT PFNGLISRENDERBUFFERPROC __glewIsRenderbuffer; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:614:59: error: ‘GLboolean __glewIsShader(GLuint)’ redeclared as different kind of entity 614 | GL_APICALL GLboolean GL_APIENTRY glIsShader (GLuint shader); | ^ /usr/include/GL/glew.h:22430:35: note: previous declaration ‘GLboolean (* __glewIsShader)(GLuint)’ 22430 | GLEW_FUN_EXPORT PFNGLISSHADERPROC __glewIsShader; | ^~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:617:58: error: ‘void __glewLinkProgram(GLuint)’ redeclared as different kind of entity 617 | GL_APICALL void GL_APIENTRY glLinkProgram (GLuint program); | ^ /usr/include/GL/glew.h:22431:38: note: previous declaration ‘void (* __glewLinkProgram)(GLuint)’ 22431 | GLEW_FUN_EXPORT PFNGLLINKPROGRAMPROC __glewLinkProgram; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:621:58: error: ‘void __glewReleaseShaderCompiler()’ redeclared as different kind of entity 621 | GL_APICALL void GL_APIENTRY glReleaseShaderCompiler (void); | ^ /usr/include/GL/glew.h:22717:48: note: previous declaration ‘void (* __glewReleaseShaderCompiler)()’ 22717 | GLEW_FUN_EXPORT PFNGLRELEASESHADERCOMPILERPROC __glewReleaseShaderCompiler; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:622:119: error: ‘void __glewRenderbufferStorage(GLenum, GLenum, GLsizei, GLsizei)’ redeclared as different kind of entity 622 | GL_APICALL void GL_APIENTRY glRenderbufferStorage (GLenum target, GLenum internalformat, GLsizei width, GLsizei height); | ^ /usr/include/GL/glew.h:22914:46: note: previous declaration ‘void (* __glewRenderbufferStorage)(GLenum, GLenum, GLsizei, GLsizei)’ 22914 | GLEW_FUN_EXPORT PFNGLRENDERBUFFERSTORAGEPROC __glewRenderbufferStorage; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:623:78: error: ‘void __glewSampleCoverage(GLfloat, GLboolean)’ redeclared as different kind of entity 623 | GL_APICALL void GL_APIENTRY glSampleCoverage (GLfloat value, GLboolean invert); | ^ /usr/include/GL/glew.h:22331:41: note: previous declaration ‘void (* __glewSampleCoverage)(GLclampf, GLboolean)’ 22331 | GLEW_FUN_EXPORT PFNGLSAMPLECOVERAGEPROC __glewSampleCoverage; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:625:138: error: ‘void __glewShaderBinary(GLsizei, const GLuint*, GLenum, const void*, GLsizei)’ redeclared as different kind of entity 625 | GL_APICALL void GL_APIENTRY glShaderBinary (GLsizei count, const GLuint *shaders, GLenum binaryformat, const void *binary, GLsizei length); | ^ /usr/include/GL/glew.h:22718:39: note: previous declaration ‘void (* __glewShaderBinary)(GLsizei, const GLuint*, GLenum, const void*, GLsizei)’ 22718 | GLEW_FUN_EXPORT PFNGLSHADERBINARYPROC __glewShaderBinary; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:626:122: error: ‘void __glewShaderSource(GLuint, GLsizei, const GLchar* const*, const GLint*)’ redeclared as different kind of entity 626 | GL_APICALL void GL_APIENTRY glShaderSource (GLuint shader, GLsizei count, const GLchar *const*string, const GLint *length); | ^ /usr/include/GL/glew.h:22432:39: note: previous declaration ‘void (* __glewShaderSource)(GLuint, GLsizei, const GLchar* const*, const GLint*)’ 22432 | GLEW_FUN_EXPORT PFNGLSHADERSOURCEPROC __glewShaderSource; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:628:100: error: ‘void __glewStencilFuncSeparate(GLenum, GLenum, GLint, GLuint)’ redeclared as different kind of entity 628 | GL_APICALL void GL_APIENTRY glStencilFuncSeparate (GLenum face, GLenum func, GLint ref, GLuint mask); | ^ /usr/include/GL/glew.h:22433:46: note: previous declaration ‘void (* __glewStencilFuncSeparate)(GLenum, GLenum, GLint, GLuint)’ 22433 | GLEW_FUN_EXPORT PFNGLSTENCILFUNCSEPARATEPROC __glewStencilFuncSeparate; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:630:76: error: ‘void __glewStencilMaskSeparate(GLenum, GLuint)’ redeclared as different kind of entity 630 | GL_APICALL void GL_APIENTRY glStencilMaskSeparate (GLenum face, GLuint mask); | ^ /usr/include/GL/glew.h:22434:46: note: previous declaration ‘void (* __glewStencilMaskSeparate)(GLenum, GLuint)’ 22434 | GLEW_FUN_EXPORT PFNGLSTENCILMASKSEPARATEPROC __glewStencilMaskSeparate; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:632:105: error: ‘void __glewStencilOpSeparate(GLenum, GLenum, GLenum, GLenum)’ redeclared as different kind of entity 632 | GL_APICALL void GL_APIENTRY glStencilOpSeparate (GLenum face, GLenum sfail, GLenum dpfail, GLenum dppass); | ^ /usr/include/GL/glew.h:22435:44: note: previous declaration ‘void (* __glewStencilOpSeparate)(GLenum, GLenum, GLenum, GLenum)’ 22435 | GLEW_FUN_EXPORT PFNGLSTENCILOPSEPARATEPROC __glewStencilOpSeparate; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:639:68: error: ‘void __glewUniform1f(GLint, GLfloat)’ redeclared as different kind of entity 639 | GL_APICALL void GL_APIENTRY glUniform1f (GLint location, GLfloat v0); | ^ /usr/include/GL/glew.h:22436:36: note: previous declaration ‘void (* __glewUniform1f)(GLint, GLfloat)’ 22436 | GLEW_FUN_EXPORT PFNGLUNIFORM1FPROC __glewUniform1f; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:640:94: error: ‘void __glewUniform1fv(GLint, GLsizei, const GLfloat*)’ redeclared as different kind of entity 640 | GL_APICALL void GL_APIENTRY glUniform1fv (GLint location, GLsizei count, const GLfloat *value); | ^ /usr/include/GL/glew.h:22437:37: note: previous declaration ‘void (* __glewUniform1fv)(GLint, GLsizei, const GLfloat*)’ 22437 | GLEW_FUN_EXPORT PFNGLUNIFORM1FVPROC __glewUniform1fv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:641:66: error: ‘void __glewUniform1i(GLint, GLint)’ redeclared as different kind of entity 641 | GL_APICALL void GL_APIENTRY glUniform1i (GLint location, GLint v0); | ^ /usr/include/GL/glew.h:22438:36: note: previous declaration ‘void (* __glewUniform1i)(GLint, GLint)’ 22438 | GLEW_FUN_EXPORT PFNGLUNIFORM1IPROC __glewUniform1i; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:642:92: error: ‘void __glewUniform1iv(GLint, GLsizei, const GLint*)’ redeclared as different kind of entity 642 | GL_APICALL void GL_APIENTRY glUniform1iv (GLint location, GLsizei count, const GLint *value); | ^ /usr/include/GL/glew.h:22439:37: note: previous declaration ‘void (* __glewUniform1iv)(GLint, GLsizei, const GLint*)’ 22439 | GLEW_FUN_EXPORT PFNGLUNIFORM1IVPROC __glewUniform1iv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:643:80: error: ‘void __glewUniform2f(GLint, GLfloat, GLfloat)’ redeclared as different kind of entity 643 | GL_APICALL void GL_APIENTRY glUniform2f (GLint location, GLfloat v0, GLfloat v1); | ^ /usr/include/GL/glew.h:22440:36: note: previous declaration ‘void (* __glewUniform2f)(GLint, GLfloat, GLfloat)’ 22440 | GLEW_FUN_EXPORT PFNGLUNIFORM2FPROC __glewUniform2f; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:644:94: error: ‘void __glewUniform2fv(GLint, GLsizei, const GLfloat*)’ redeclared as different kind of entity 644 | GL_APICALL void GL_APIENTRY glUniform2fv (GLint location, GLsizei count, const GLfloat *value); | ^ /usr/include/GL/glew.h:22441:37: note: previous declaration ‘void (* __glewUniform2fv)(GLint, GLsizei, const GLfloat*)’ 22441 | GLEW_FUN_EXPORT PFNGLUNIFORM2FVPROC __glewUniform2fv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:645:76: error: ‘void __glewUniform2i(GLint, GLint, GLint)’ redeclared as different kind of entity 645 | GL_APICALL void GL_APIENTRY glUniform2i (GLint location, GLint v0, GLint v1); | ^ /usr/include/GL/glew.h:22442:36: note: previous declaration ‘void (* __glewUniform2i)(GLint, GLint, GLint)’ 22442 | GLEW_FUN_EXPORT PFNGLUNIFORM2IPROC __glewUniform2i; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:646:92: error: ‘void __glewUniform2iv(GLint, GLsizei, const GLint*)’ redeclared as different kind of entity 646 | GL_APICALL void GL_APIENTRY glUniform2iv (GLint location, GLsizei count, const GLint *value); | ^ /usr/include/GL/glew.h:22443:37: note: previous declaration ‘void (* __glewUniform2iv)(GLint, GLsizei, const GLint*)’ 22443 | GLEW_FUN_EXPORT PFNGLUNIFORM2IVPROC __glewUniform2iv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:647:92: error: ‘void __glewUniform3f(GLint, GLfloat, GLfloat, GLfloat)’ redeclared as different kind of entity 647 | GL_APICALL void GL_APIENTRY glUniform3f (GLint location, GLfloat v0, GLfloat v1, GLfloat v2); | ^ /usr/include/GL/glew.h:22444:36: note: previous declaration ‘void (* __glewUniform3f)(GLint, GLfloat, GLfloat, GLfloat)’ 22444 | GLEW_FUN_EXPORT PFNGLUNIFORM3FPROC __glewUniform3f; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:648:94: error: ‘void __glewUniform3fv(GLint, GLsizei, const GLfloat*)’ redeclared as different kind of entity 648 | GL_APICALL void GL_APIENTRY glUniform3fv (GLint location, GLsizei count, const GLfloat *value); | ^ /usr/include/GL/glew.h:22445:37: note: previous declaration ‘void (* __glewUniform3fv)(GLint, GLsizei, const GLfloat*)’ 22445 | GLEW_FUN_EXPORT PFNGLUNIFORM3FVPROC __glewUniform3fv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:649:86: error: ‘void __glewUniform3i(GLint, GLint, GLint, GLint)’ redeclared as different kind of entity 649 | GL_APICALL void GL_APIENTRY glUniform3i (GLint location, GLint v0, GLint v1, GLint v2); | ^ /usr/include/GL/glew.h:22446:36: note: previous declaration ‘void (* __glewUniform3i)(GLint, GLint, GLint, GLint)’ 22446 | GLEW_FUN_EXPORT PFNGLUNIFORM3IPROC __glewUniform3i; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:650:92: error: ‘void __glewUniform3iv(GLint, GLsizei, const GLint*)’ redeclared as different kind of entity 650 | GL_APICALL void GL_APIENTRY glUniform3iv (GLint location, GLsizei count, const GLint *value); | ^ /usr/include/GL/glew.h:22447:37: note: previous declaration ‘void (* __glewUniform3iv)(GLint, GLsizei, const GLint*)’ 22447 | GLEW_FUN_EXPORT PFNGLUNIFORM3IVPROC __glewUniform3iv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:651:104: error: ‘void __glewUniform4f(GLint, GLfloat, GLfloat, GLfloat, GLfloat)’ redeclared as different kind of entity 651 | GL_APICALL void GL_APIENTRY glUniform4f (GLint location, GLfloat v0, GLfloat v1, GLfloat v2, GLfloat v3); | ^ /usr/include/GL/glew.h:22448:36: note: previous declaration ‘void (* __glewUniform4f)(GLint, GLfloat, GLfloat, GLfloat, GLfloat)’ 22448 | GLEW_FUN_EXPORT PFNGLUNIFORM4FPROC __glewUniform4f; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:652:94: error: ‘void __glewUniform4fv(GLint, GLsizei, const GLfloat*)’ redeclared as different kind of entity 652 | GL_APICALL void GL_APIENTRY glUniform4fv (GLint location, GLsizei count, const GLfloat *value); | ^ /usr/include/GL/glew.h:22449:37: note: previous declaration ‘void (* __glewUniform4fv)(GLint, GLsizei, const GLfloat*)’ 22449 | GLEW_FUN_EXPORT PFNGLUNIFORM4FVPROC __glewUniform4fv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:653:96: error: ‘void __glewUniform4i(GLint, GLint, GLint, GLint, GLint)’ redeclared as different kind of entity 653 | GL_APICALL void GL_APIENTRY glUniform4i (GLint location, GLint v0, GLint v1, GLint v2, GLint v3); | ^ /usr/include/GL/glew.h:22450:36: note: previous declaration ‘void (* __glewUniform4i)(GLint, GLint, GLint, GLint, GLint)’ 22450 | GLEW_FUN_EXPORT PFNGLUNIFORM4IPROC __glewUniform4i; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:654:92: error: ‘void __glewUniform4iv(GLint, GLsizei, const GLint*)’ redeclared as different kind of entity 654 | GL_APICALL void GL_APIENTRY glUniform4iv (GLint location, GLsizei count, const GLint *value); | ^ /usr/include/GL/glew.h:22451:37: note: previous declaration ‘void (* __glewUniform4iv)(GLint, GLsizei, const GLint*)’ 22451 | GLEW_FUN_EXPORT PFNGLUNIFORM4IVPROC __glewUniform4iv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:655:121: error: ‘void __glewUniformMatrix2fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 655 | GL_APICALL void GL_APIENTRY glUniformMatrix2fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22452:43: note: previous declaration ‘void (* __glewUniformMatrix2fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22452 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX2FVPROC __glewUniformMatrix2fv; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:656:121: error: ‘void __glewUniformMatrix3fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 656 | GL_APICALL void GL_APIENTRY glUniformMatrix3fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22453:43: note: previous declaration ‘void (* __glewUniformMatrix3fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22453 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX3FVPROC __glewUniformMatrix3fv; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:657:121: error: ‘void __glewUniformMatrix4fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 657 | GL_APICALL void GL_APIENTRY glUniformMatrix4fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22454:43: note: previous declaration ‘void (* __glewUniformMatrix4fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22454 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX4FVPROC __glewUniformMatrix4fv; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:658:57: error: ‘void __glewUseProgram(GLuint)’ redeclared as different kind of entity 658 | GL_APICALL void GL_APIENTRY glUseProgram (GLuint program); | ^ /usr/include/GL/glew.h:22455:37: note: previous declaration ‘void (* __glewUseProgram)(GLuint)’ 22455 | GLEW_FUN_EXPORT PFNGLUSEPROGRAMPROC __glewUseProgram; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:659:62: error: ‘void __glewValidateProgram(GLuint)’ redeclared as different kind of entity 659 | GL_APICALL void GL_APIENTRY glValidateProgram (GLuint program); | ^ /usr/include/GL/glew.h:22456:42: note: previous declaration ‘void (* __glewValidateProgram)(GLuint)’ 22456 | GLEW_FUN_EXPORT PFNGLVALIDATEPROGRAMPROC __glewValidateProgram; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:660:70: error: ‘void __glewVertexAttrib1f(GLuint, GLfloat)’ redeclared as different kind of entity 660 | GL_APICALL void GL_APIENTRY glVertexAttrib1f (GLuint index, GLfloat x); | ^ /usr/include/GL/glew.h:22459:41: note: previous declaration ‘void (* __glewVertexAttrib1f)(GLuint, GLfloat)’ 22459 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIB1FPROC __glewVertexAttrib1f; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:661:78: error: ‘void __glewVertexAttrib1fv(GLuint, const GLfloat*)’ redeclared as different kind of entity 661 | GL_APICALL void GL_APIENTRY glVertexAttrib1fv (GLuint index, const GLfloat *v); | ^ /usr/include/GL/glew.h:22460:42: note: previous declaration ‘void (* __glewVertexAttrib1fv)(GLuint, const GLfloat*)’ 22460 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIB1FVPROC __glewVertexAttrib1fv; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:662:81: error: ‘void __glewVertexAttrib2f(GLuint, GLfloat, GLfloat)’ redeclared as different kind of entity 662 | GL_APICALL void GL_APIENTRY glVertexAttrib2f (GLuint index, GLfloat x, GLfloat y); | ^ /usr/include/GL/glew.h:22465:41: note: previous declaration ‘void (* __glewVertexAttrib2f)(GLuint, GLfloat, GLfloat)’ 22465 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIB2FPROC __glewVertexAttrib2f; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:663:78: error: ‘void __glewVertexAttrib2fv(GLuint, const GLfloat*)’ redeclared as different kind of entity 663 | GL_APICALL void GL_APIENTRY glVertexAttrib2fv (GLuint index, const GLfloat *v); | ^ /usr/include/GL/glew.h:22466:42: note: previous declaration ‘void (* __glewVertexAttrib2fv)(GLuint, const GLfloat*)’ 22466 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIB2FVPROC __glewVertexAttrib2fv; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:664:92: error: ‘void __glewVertexAttrib3f(GLuint, GLfloat, GLfloat, GLfloat)’ redeclared as different kind of entity 664 | GL_APICALL void GL_APIENTRY glVertexAttrib3f (GLuint index, GLfloat x, GLfloat y, GLfloat z); | ^ /usr/include/GL/glew.h:22471:41: note: previous declaration ‘void (* __glewVertexAttrib3f)(GLuint, GLfloat, GLfloat, GLfloat)’ 22471 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIB3FPROC __glewVertexAttrib3f; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:665:78: error: ‘void __glewVertexAttrib3fv(GLuint, const GLfloat*)’ redeclared as different kind of entity 665 | GL_APICALL void GL_APIENTRY glVertexAttrib3fv (GLuint index, const GLfloat *v); | ^ /usr/include/GL/glew.h:22472:42: note: previous declaration ‘void (* __glewVertexAttrib3fv)(GLuint, const GLfloat*)’ 22472 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIB3FVPROC __glewVertexAttrib3fv; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:666:103: error: ‘void __glewVertexAttrib4f(GLuint, GLfloat, GLfloat, GLfloat, GLfloat)’ redeclared as different kind of entity 666 | GL_APICALL void GL_APIENTRY glVertexAttrib4f (GLuint index, GLfloat x, GLfloat y, GLfloat z, GLfloat w); | ^ /usr/include/GL/glew.h:22485:41: note: previous declaration ‘void (* __glewVertexAttrib4f)(GLuint, GLfloat, GLfloat, GLfloat, GLfloat)’ 22485 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIB4FPROC __glewVertexAttrib4f; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:667:78: error: ‘void __glewVertexAttrib4fv(GLuint, const GLfloat*)’ redeclared as different kind of entity 667 | GL_APICALL void GL_APIENTRY glVertexAttrib4fv (GLuint index, const GLfloat *v); | ^ /usr/include/GL/glew.h:22486:42: note: previous declaration ‘void (* __glewVertexAttrib4fv)(GLuint, const GLfloat*)’ 22486 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIB4FVPROC __glewVertexAttrib4fv; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:668:148: error: ‘void __glewVertexAttribPointer(GLuint, GLint, GLenum, GLboolean, GLsizei, const void*)’ redeclared as different kind of entity 668 | GL_APICALL void GL_APIENTRY glVertexAttribPointer (GLuint index, GLint size, GLenum type, GLboolean normalized, GLsizei stride, const void *pointer); | ^ /usr/include/GL/glew.h:22493:46: note: previous declaration ‘void (* __glewVertexAttribPointer)(GLuint, GLint, GLenum, GLboolean, GLsizei, const void*)’ 22493 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBPOINTERPROC __glewVertexAttribPointer; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1103:136: error: ‘void __glewDrawRangeElements(GLenum, GLuint, GLuint, GLsizei, GLenum, const void*)’ redeclared as different kind of entity 1103 | GL_APICALL void GL_APIENTRY glDrawRangeElements (GLenum mode, GLuint start, GLuint end, GLsizei count, GLenum type, const void *indices); | ^ /usr/include/GL/glew.h:22282:44: note: previous declaration ‘void (* __glewDrawRangeElements)(GLenum, GLuint, GLuint, GLsizei, GLenum, const void*)’ 22282 | GLEW_FUN_EXPORT PFNGLDRAWRANGEELEMENTSPROC __glewDrawRangeElements; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1104:199: error: ‘void __glewTexImage3D(GLenum, GLint, GLint, GLsizei, GLsizei, GLsizei, GLint, GLenum, GLenum, const void*)’ redeclared as different kind of entity 1104 | GL_APICALL void GL_APIENTRY glTexImage3D (GLenum target, GLint level, GLint internalformat, GLsizei width, GLsizei height, GLsizei depth, GLint border, GLenum format, GLenum type, const void *pixels); | ^ /usr/include/GL/glew.h:22283:37: note: previous declaration ‘void (* __glewTexImage3D)(GLenum, GLint, GLint, GLsizei, GLsizei, GLsizei, GLint, GLenum, GLenum, const void*)’ 22283 | GLEW_FUN_EXPORT PFNGLTEXIMAGE3DPROC __glewTexImage3D; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1105:211: error: ‘void __glewTexSubImage3D(GLenum, GLint, GLint, GLint, GLint, GLsizei, GLsizei, GLsizei, GLenum, GLenum, const void*)’ redeclared as different kind of entity 1105 | GL_APICALL void GL_APIENTRY glTexSubImage3D (GLenum target, GLint level, GLint xoffset, GLint yoffset, GLint zoffset, GLsizei width, GLsizei height, GLsizei depth, GLenum format, GLenum type, const void *pixels); | ^ /usr/include/GL/glew.h:22284:40: note: previous declaration ‘void (* __glewTexSubImage3D)(GLenum, GLint, GLint, GLint, GLint, GLsizei, GLsizei, GLsizei, GLenum, GLenum, const void*)’ 22284 | GLEW_FUN_EXPORT PFNGLTEXSUBIMAGE3DPROC __glewTexSubImage3D; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1106:170: error: ‘void __glewCopyTexSubImage3D(GLenum, GLint, GLint, GLint, GLint, GLint, GLint, GLsizei, GLsizei)’ redeclared as different kind of entity 1106 | GL_APICALL void GL_APIENTRY glCopyTexSubImage3D (GLenum target, GLint level, GLint xoffset, GLint yoffset, GLint zoffset, GLint x, GLint y, GLsizei width, GLsizei height); | ^ /usr/include/GL/glew.h:22281:44: note: previous declaration ‘void (* __glewCopyTexSubImage3D)(GLenum, GLint, GLint, GLint, GLint, GLint, GLint, GLsizei, GLsizei)’ 22281 | GLEW_FUN_EXPORT PFNGLCOPYTEXSUBIMAGE3DPROC __glewCopyTexSubImage3D; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1107:199: error: ‘void __glewCompressedTexImage3D(GLenum, GLint, GLenum, GLsizei, GLsizei, GLsizei, GLint, GLsizei, const void*)’ redeclared as different kind of entity 1107 | GL_APICALL void GL_APIENTRY glCompressedTexImage3D (GLenum target, GLint level, GLenum internalformat, GLsizei width, GLsizei height, GLsizei depth, GLint border, GLsizei imageSize, const void *data); | ^ /usr/include/GL/glew.h:22290:47: note: previous declaration ‘void (* __glewCompressedTexImage3D)(GLenum, GLint, GLenum, GLsizei, GLsizei, GLsizei, GLint, GLsizei, const void*)’ 22290 | GLEW_FUN_EXPORT PFNGLCOMPRESSEDTEXIMAGE3DPROC __glewCompressedTexImage3D; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1108:225: error: ‘void __glewCompressedTexSubImage3D(GLenum, GLint, GLint, GLint, GLint, GLsizei, GLsizei, GLsizei, GLenum, GLsizei, const void*)’ redeclared as different kind of entity 1108 | GL_APICALL void GL_APIENTRY glCompressedTexSubImage3D (GLenum target, GLint level, GLint xoffset, GLint yoffset, GLint zoffset, GLsizei width, GLsizei height, GLsizei depth, GLenum format, GLsizei imageSize, const void *data); | ^ /usr/include/GL/glew.h:22293:50: note: previous declaration ‘void (* __glewCompressedTexSubImage3D)(GLenum, GLint, GLint, GLint, GLint, GLsizei, GLsizei, GLsizei, GLenum, GLsizei, const void*)’ 22293 | GLEW_FUN_EXPORT PFNGLCOMPRESSEDTEXSUBIMAGE3DPROC __glewCompressedTexSubImage3D; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1109:65: error: ‘void __glewGenQueries(GLsizei, GLuint*)’ redeclared as different kind of entity 1109 | GL_APICALL void GL_APIENTRY glGenQueries (GLsizei n, GLuint *ids); | ^ /usr/include/GL/glew.h:22389:37: note: previous declaration ‘void (* __glewGenQueries)(GLsizei, GLuint*)’ 22389 | GLEW_FUN_EXPORT PFNGLGENQUERIESPROC __glewGenQueries; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1110:74: error: ‘void __glewDeleteQueries(GLsizei, const GLuint*)’ redeclared as different kind of entity 1110 | GL_APICALL void GL_APIENTRY glDeleteQueries (GLsizei n, const GLuint *ids); | ^ /usr/include/GL/glew.h:22386:40: note: previous declaration ‘void (* __glewDeleteQueries)(GLsizei, const GLuint*)’ 22386 | GLEW_FUN_EXPORT PFNGLDELETEQUERIESPROC __glewDeleteQueries; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1111:54: error: ‘GLboolean __glewIsQuery(GLuint)’ redeclared as different kind of entity 1111 | GL_APICALL GLboolean GL_APIENTRY glIsQuery (GLuint id); | ^ /usr/include/GL/glew.h:22397:34: note: previous declaration ‘GLboolean (* __glewIsQuery)(GLuint)’ 22397 | GLEW_FUN_EXPORT PFNGLISQUERYPROC __glewIsQuery; | ^~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1112:67: error: ‘void __glewBeginQuery(GLenum, GLuint)’ redeclared as different kind of entity 1112 | GL_APICALL void GL_APIENTRY glBeginQuery (GLenum target, GLuint id); | ^ /usr/include/GL/glew.h:22381:37: note: previous declaration ‘void (* __glewBeginQuery)(GLenum, GLuint)’ 22381 | GLEW_FUN_EXPORT PFNGLBEGINQUERYPROC __glewBeginQuery; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1113:54: error: ‘void __glewEndQuery(GLenum)’ redeclared as different kind of entity 1113 | GL_APICALL void GL_APIENTRY glEndQuery (GLenum target); | ^ /usr/include/GL/glew.h:22387:35: note: previous declaration ‘void (* __glewEndQuery)(GLenum)’ 22387 | GLEW_FUN_EXPORT PFNGLENDQUERYPROC __glewEndQuery; | ^~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1114:85: error: ‘void __glewGetQueryiv(GLenum, GLenum, GLint*)’ redeclared as different kind of entity 1114 | GL_APICALL void GL_APIENTRY glGetQueryiv (GLenum target, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22395:37: note: previous declaration ‘void (* __glewGetQueryiv)(GLenum, GLenum, GLint*)’ 22395 | GLEW_FUN_EXPORT PFNGLGETQUERYIVPROC __glewGetQueryiv; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1115:89: error: ‘void __glewGetQueryObjectuiv(GLuint, GLenum, GLuint*)’ redeclared as different kind of entity 1115 | GL_APICALL void GL_APIENTRY glGetQueryObjectuiv (GLuint id, GLenum pname, GLuint *params); | ^ /usr/include/GL/glew.h:22394:44: note: previous declaration ‘void (* __glewGetQueryObjectuiv)(GLuint, GLenum, GLuint*)’ 22394 | GLEW_FUN_EXPORT PFNGLGETQUERYOBJECTUIVPROC __glewGetQueryObjectuiv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1116:62: error: ‘GLboolean __glewUnmapBuffer(GLenum)’ redeclared as different kind of entity 1116 | GL_APICALL GLboolean GL_APIENTRY glUnmapBuffer (GLenum target); | ^ /usr/include/GL/glew.h:22399:38: note: previous declaration ‘GLboolean (* __glewUnmapBuffer)(GLenum)’ 22399 | GLEW_FUN_EXPORT PFNGLUNMAPBUFFERPROC __glewUnmapBuffer; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1117:92: error: ‘void __glewGetBufferPointerv(GLenum, GLenum, void**)’ redeclared as different kind of entity 1117 | GL_APICALL void GL_APIENTRY glGetBufferPointerv (GLenum target, GLenum pname, void **params); | ^ /usr/include/GL/glew.h:22391:44: note: previous declaration ‘void (* __glewGetBufferPointerv)(GLenum, GLenum, void**)’ 22391 | GLEW_FUN_EXPORT PFNGLGETBUFFERPOINTERVPROC __glewGetBufferPointerv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1118:73: error: ‘void __glewDrawBuffers(GLsizei, const GLenum*)’ redeclared as different kind of entity 1118 | GL_APICALL void GL_APIENTRY glDrawBuffers (GLsizei n, const GLenum *bufs); | ^ /usr/include/GL/glew.h:22411:38: note: previous declaration ‘void (* __glewDrawBuffers)(GLsizei, const GLenum*)’ 22411 | GLEW_FUN_EXPORT PFNGLDRAWBUFFERSPROC __glewDrawBuffers; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1119:123: error: ‘void __glewUniformMatrix2x3fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1119 | GL_APICALL void GL_APIENTRY glUniformMatrix2x3fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22495:45: note: previous declaration ‘void (* __glewUniformMatrix2x3fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22495 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX2X3FVPROC __glewUniformMatrix2x3fv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1120:123: error: ‘void __glewUniformMatrix3x2fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1120 | GL_APICALL void GL_APIENTRY glUniformMatrix3x2fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22497:45: note: previous declaration ‘void (* __glewUniformMatrix3x2fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22497 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX3X2FVPROC __glewUniformMatrix3x2fv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1121:123: error: ‘void __glewUniformMatrix2x4fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1121 | GL_APICALL void GL_APIENTRY glUniformMatrix2x4fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22496:45: note: previous declaration ‘void (* __glewUniformMatrix2x4fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22496 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX2X4FVPROC __glewUniformMatrix2x4fv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1122:123: error: ‘void __glewUniformMatrix4x2fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1122 | GL_APICALL void GL_APIENTRY glUniformMatrix4x2fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22499:45: note: previous declaration ‘void (* __glewUniformMatrix4x2fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22499 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX4X2FVPROC __glewUniformMatrix4x2fv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1123:123: error: ‘void __glewUniformMatrix3x4fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1123 | GL_APICALL void GL_APIENTRY glUniformMatrix3x4fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22498:45: note: previous declaration ‘void (* __glewUniformMatrix3x4fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22498 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX3X4FVPROC __glewUniformMatrix3x4fv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1124:123: error: ‘void __glewUniformMatrix4x3fv(GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1124 | GL_APICALL void GL_APIENTRY glUniformMatrix4x3fv (GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:22500:45: note: previous declaration ‘void (* __glewUniformMatrix4x3fv)(GLint, GLsizei, GLboolean, const GLfloat*)’ 22500 | GLEW_FUN_EXPORT PFNGLUNIFORMMATRIX4X3FVPROC __glewUniformMatrix4x3fv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1125:182: error: ‘void __glewBlitFramebuffer(GLint, GLint, GLint, GLint, GLint, GLint, GLint, GLint, GLbitfield, GLenum)’ redeclared as different kind of entity 1125 | GL_APICALL void GL_APIENTRY glBlitFramebuffer (GLint srcX0, GLint srcY0, GLint srcX1, GLint srcY1, GLint dstX0, GLint dstY0, GLint dstX1, GLint dstY1, GLbitfield mask, GLenum filter); | ^ /usr/include/GL/glew.h:22898:42: note: previous declaration ‘void (* __glewBlitFramebuffer)(GLint, GLint, GLint, GLint, GLint, GLint, GLint, GLint, GLbitfield, GLenum)’ 22898 | GLEW_FUN_EXPORT PFNGLBLITFRAMEBUFFERPROC __glewBlitFramebuffer; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1126:147: error: ‘void __glewRenderbufferStorageMultisample(GLenum, GLsizei, GLenum, GLsizei, GLsizei)’ redeclared as different kind of entity 1126 | GL_APICALL void GL_APIENTRY glRenderbufferStorageMultisample (GLenum target, GLsizei samples, GLenum internalformat, GLsizei width, GLsizei height); | ^ /usr/include/GL/glew.h:22915:57: note: previous declaration ‘void (* __glewRenderbufferStorageMultisample)(GLenum, GLsizei, GLenum, GLsizei, GLsizei)’ 22915 | GLEW_FUN_EXPORT PFNGLRENDERBUFFERSTORAGEMULTISAMPLEPROC __glewRenderbufferStorageMultisample; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1127:130: error: ‘void __glewFramebufferTextureLayer(GLenum, GLenum, GLuint, GLint, GLint)’ redeclared as different kind of entity 1127 | GL_APICALL void GL_APIENTRY glFramebufferTextureLayer (GLenum target, GLenum attachment, GLuint texture, GLint level, GLint layer); | ^ /usr/include/GL/glew.h:22906:50: note: previous declaration ‘void (* __glewFramebufferTextureLayer)(GLenum, GLenum, GLuint, GLint, GLint)’ 22906 | GLEW_FUN_EXPORT PFNGLFRAMEBUFFERTEXTURELAYERPROC __glewFramebufferTextureLayer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1128:116: error: ‘void* __glewMapBufferRange(GLenum, GLintptr, GLsizeiptr, GLbitfield)’ redeclared as different kind of entity 1128 | GL_APICALL void *GL_APIENTRY glMapBufferRange (GLenum target, GLintptr offset, GLsizeiptr length, GLbitfield access); | ^ /usr/include/GL/glew.h:23039:41: note: previous declaration ‘void* (* __glewMapBufferRange)(GLenum, GLintptr, GLsizeiptr, GLbitfield)’ 23039 | GLEW_FUN_EXPORT PFNGLMAPBUFFERRANGEPROC __glewMapBufferRange; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1129:104: error: ‘void __glewFlushMappedBufferRange(GLenum, GLintptr, GLsizeiptr)’ redeclared as different kind of entity 1129 | GL_APICALL void GL_APIENTRY glFlushMappedBufferRange (GLenum target, GLintptr offset, GLsizeiptr length); | ^ /usr/include/GL/glew.h:23038:49: note: previous declaration ‘void (* __glewFlushMappedBufferRange)(GLenum, GLintptr, GLsizeiptr)’ 23038 | GLEW_FUN_EXPORT PFNGLFLUSHMAPPEDBUFFERRANGEPROC __glewFlushMappedBufferRange; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1130:60: error: ‘void __glewBindVertexArray(GLuint)’ redeclared as different kind of entity 1130 | GL_APICALL void GL_APIENTRY glBindVertexArray (GLuint array); | ^ /usr/include/GL/glew.h:23366:42: note: previous declaration ‘void (* __glewBindVertexArray)(GLuint)’ 23366 | GLEW_FUN_EXPORT PFNGLBINDVERTEXARRAYPROC __glewBindVertexArray; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1131:82: error: ‘void __glewDeleteVertexArrays(GLsizei, const GLuint*)’ redeclared as different kind of entity 1131 | GL_APICALL void GL_APIENTRY glDeleteVertexArrays (GLsizei n, const GLuint *arrays); | ^ /usr/include/GL/glew.h:23367:45: note: previous declaration ‘void (* __glewDeleteVertexArrays)(GLsizei, const GLuint*)’ 23367 | GLEW_FUN_EXPORT PFNGLDELETEVERTEXARRAYSPROC __glewDeleteVertexArrays; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1132:73: error: ‘void __glewGenVertexArrays(GLsizei, GLuint*)’ redeclared as different kind of entity 1132 | GL_APICALL void GL_APIENTRY glGenVertexArrays (GLsizei n, GLuint *arrays); | ^ /usr/include/GL/glew.h:23368:42: note: previous declaration ‘void (* __glewGenVertexArrays)(GLsizei, GLuint*)’ 23368 | GLEW_FUN_EXPORT PFNGLGENVERTEXARRAYSPROC __glewGenVertexArrays; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1133:63: error: ‘GLboolean __glewIsVertexArray(GLuint)’ redeclared as different kind of entity 1133 | GL_APICALL GLboolean GL_APIENTRY glIsVertexArray (GLuint array); | ^ /usr/include/GL/glew.h:23369:40: note: previous declaration ‘GLboolean (* __glewIsVertexArray)(GLuint)’ 23369 | GLEW_FUN_EXPORT PFNGLISVERTEXARRAYPROC __glewIsVertexArray; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1134:86: error: ‘void __glewGetIntegeri_v(GLenum, GLuint, GLint*)’ redeclared as different kind of entity 1134 | GL_APICALL void GL_APIENTRY glGetIntegeri_v (GLenum target, GLuint index, GLint *data); | ^ /usr/include/GL/glew.h:23361:40: note: previous declaration ‘void (* __glewGetIntegeri_v)(GLenum, GLuint, GLint*)’ 23361 | GLEW_FUN_EXPORT PFNGLGETINTEGERI_VPROC __glewGetIntegeri_v; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1135:75: error: ‘void __glewBeginTransformFeedback(GLenum)’ redeclared as different kind of entity 1135 | GL_APICALL void GL_APIENTRY glBeginTransformFeedback (GLenum primitiveMode); | ^ /usr/include/GL/glew.h:22503:49: note: previous declaration ‘void (* __glewBeginTransformFeedback)(GLenum)’ 22503 | GLEW_FUN_EXPORT PFNGLBEGINTRANSFORMFEEDBACKPROC __glewBeginTransformFeedback; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1136:57: error: ‘void __glewEndTransformFeedback()’ redeclared as different kind of entity 1136 | GL_APICALL void GL_APIENTRY glEndTransformFeedback (void); | ^ /usr/include/GL/glew.h:22514:47: note: previous declaration ‘void (* __glewEndTransformFeedback)()’ 22514 | GLEW_FUN_EXPORT PFNGLENDTRANSFORMFEEDBACKPROC __glewEndTransformFeedback; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1137:124: error: ‘void __glewBindBufferRange(GLenum, GLuint, GLuint, GLintptr, GLsizeiptr)’ redeclared as different kind of entity 1137 | GL_APICALL void GL_APIENTRY glBindBufferRange (GLenum target, GLuint index, GLuint buffer, GLintptr offset, GLsizeiptr size); | ^ /usr/include/GL/glew.h:23356:42: note: previous declaration ‘void (* __glewBindBufferRange)(GLenum, GLuint, GLuint, GLintptr, GLsizeiptr)’ 23356 | GLEW_FUN_EXPORT PFNGLBINDBUFFERRANGEPROC __glewBindBufferRange; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1138:89: error: ‘void __glewBindBufferBase(GLenum, GLuint, GLuint)’ redeclared as different kind of entity 1138 | GL_APICALL void GL_APIENTRY glBindBufferBase (GLenum target, GLuint index, GLuint buffer); | ^ /usr/include/GL/glew.h:23355:41: note: previous declaration ‘void (* __glewBindBufferBase)(GLenum, GLuint, GLuint)’ 23355 | GLEW_FUN_EXPORT PFNGLBINDBUFFERBASEPROC __glewBindBufferBase; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1139:136: error: ‘void __glewTransformFeedbackVaryings(GLuint, GLsizei, const GLchar* const*, GLenum)’ redeclared as different kind of entity 1139 | GL_APICALL void GL_APIENTRY glTransformFeedbackVaryings (GLuint program, GLsizei count, const GLchar *const*varyings, GLenum bufferMode); | ^ /usr/include/GL/glew.h:22527:52: note: previous declaration ‘void (* __glewTransformFeedbackVaryings)(GLuint, GLsizei, const GLchar* const*, GLenum)’ 22527 | GLEW_FUN_EXPORT PFNGLTRANSFORMFEEDBACKVARYINGSPROC __glewTransformFeedbackVaryings; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1140:165: error: ‘void __glewGetTransformFeedbackVarying(GLuint, GLuint, GLsizei, GLsizei*, GLsizei*, GLenum*, GLchar*)’ redeclared as different kind of entity 1140 | GL_APICALL void GL_APIENTRY glGetTransformFeedbackVarying (GLuint program, GLuint index, GLsizei bufSize, GLsizei *length, GLsizei *size, GLenum *type, GLchar *name); | ^ /usr/include/GL/glew.h:22520:54: note: previous declaration ‘void (* __glewGetTransformFeedbackVarying)(GLuint, GLuint, GLsizei, GLsizei*, GLsizei*, GLenum*, GLchar*)’ 22520 | GLEW_FUN_EXPORT PFNGLGETTRANSFORMFEEDBACKVARYINGPROC __glewGetTransformFeedbackVarying; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1141:127: error: ‘void __glewVertexAttribIPointer(GLuint, GLint, GLenum, GLsizei, const void*)’ redeclared as different kind of entity 1141 | GL_APICALL void GL_APIENTRY glVertexAttribIPointer (GLuint index, GLint size, GLenum type, GLsizei stride, const void *pointer); | ^ /usr/include/GL/glew.h:22556:47: note: previous declaration ‘void (* __glewVertexAttribIPointer)(GLuint, GLint, GLenum, GLsizei, const void*)’ 22556 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBIPOINTERPROC __glewVertexAttribIPointer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1142:92: error: ‘void __glewGetVertexAttribIiv(GLuint, GLenum, GLint*)’ redeclared as different kind of entity 1142 | GL_APICALL void GL_APIENTRY glGetVertexAttribIiv (GLuint index, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22522:45: note: previous declaration ‘void (* __glewGetVertexAttribIiv)(GLuint, GLenum, GLint*)’ 22522 | GLEW_FUN_EXPORT PFNGLGETVERTEXATTRIBIIVPROC __glewGetVertexAttribIiv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1143:94: error: ‘void __glewGetVertexAttribIuiv(GLuint, GLenum, GLuint*)’ redeclared as different kind of entity 1143 | GL_APICALL void GL_APIENTRY glGetVertexAttribIuiv (GLuint index, GLenum pname, GLuint *params); | ^ /usr/include/GL/glew.h:22523:46: note: previous declaration ‘void (* __glewGetVertexAttribIuiv)(GLuint, GLenum, GLuint*)’ 22523 | GLEW_FUN_EXPORT PFNGLGETVERTEXATTRIBIUIVPROC __glewGetVertexAttribIuiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1144:96: error: ‘void __glewVertexAttribI4i(GLuint, GLint, GLint, GLint, GLint)’ redeclared as different kind of entity 1144 | GL_APICALL void GL_APIENTRY glVertexAttribI4i (GLuint index, GLint x, GLint y, GLint z, GLint w); | ^ /usr/include/GL/glew.h:22549:42: note: previous declaration ‘void (* __glewVertexAttribI4i)(GLuint, GLint, GLint, GLint, GLint)’ 22549 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBI4IPROC __glewVertexAttribI4i; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1145:101: error: ‘void __glewVertexAttribI4ui(GLuint, GLuint, GLuint, GLuint, GLuint)’ redeclared as different kind of entity 1145 | GL_APICALL void GL_APIENTRY glVertexAttribI4ui (GLuint index, GLuint x, GLuint y, GLuint z, GLuint w); | ^ /usr/include/GL/glew.h:22553:43: note: previous declaration ‘void (* __glewVertexAttribI4ui)(GLuint, GLuint, GLuint, GLuint, GLuint)’ 22553 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBI4UIPROC __glewVertexAttribI4ui; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1146:77: error: ‘void __glewVertexAttribI4iv(GLuint, const GLint*)’ redeclared as different kind of entity 1146 | GL_APICALL void GL_APIENTRY glVertexAttribI4iv (GLuint index, const GLint *v); | ^ /usr/include/GL/glew.h:22550:43: note: previous declaration ‘void (* __glewVertexAttribI4iv)(GLuint, const GLint*)’ 22550 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBI4IVPROC __glewVertexAttribI4iv; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1147:79: error: ‘void __glewVertexAttribI4uiv(GLuint, const GLuint*)’ redeclared as different kind of entity 1147 | GL_APICALL void GL_APIENTRY glVertexAttribI4uiv (GLuint index, const GLuint *v); | ^ /usr/include/GL/glew.h:22554:44: note: previous declaration ‘void (* __glewVertexAttribI4uiv)(GLuint, const GLuint*)’ 22554 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBI4UIVPROC __glewVertexAttribI4uiv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1148:92: error: ‘void __glewGetUniformuiv(GLuint, GLint, GLuint*)’ redeclared as different kind of entity 1148 | GL_APICALL void GL_APIENTRY glGetUniformuiv (GLuint program, GLint location, GLuint *params); | ^ /usr/include/GL/glew.h:22521:40: note: previous declaration ‘void (* __glewGetUniformuiv)(GLuint, GLint, GLuint*)’ 22521 | GLEW_FUN_EXPORT PFNGLGETUNIFORMUIVPROC __glewGetUniformuiv; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1149:87: error: ‘GLint __glewGetFragDataLocation(GLuint, const GLchar*)’ redeclared as different kind of entity 1149 | GL_APICALL GLint GL_APIENTRY glGetFragDataLocation (GLuint program, const GLchar *name); | ^ /usr/include/GL/glew.h:22516:46: note: previous declaration ‘GLint (* __glewGetFragDataLocation)(GLuint, const GLchar*)’ 22516 | GLEW_FUN_EXPORT PFNGLGETFRAGDATALOCATIONPROC __glewGetFragDataLocation; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1150:68: error: ‘void __glewUniform1ui(GLint, GLuint)’ redeclared as different kind of entity 1150 | GL_APICALL void GL_APIENTRY glUniform1ui (GLint location, GLuint v0); | ^ /usr/include/GL/glew.h:22528:37: note: previous declaration ‘void (* __glewUniform1ui)(GLint, GLuint)’ 22528 | GLEW_FUN_EXPORT PFNGLUNIFORM1UIPROC __glewUniform1ui; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1151:79: error: ‘void __glewUniform2ui(GLint, GLuint, GLuint)’ redeclared as different kind of entity 1151 | GL_APICALL void GL_APIENTRY glUniform2ui (GLint location, GLuint v0, GLuint v1); | ^ /usr/include/GL/glew.h:22530:37: note: previous declaration ‘void (* __glewUniform2ui)(GLint, GLuint, GLuint)’ 22530 | GLEW_FUN_EXPORT PFNGLUNIFORM2UIPROC __glewUniform2ui; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1152:90: error: ‘void __glewUniform3ui(GLint, GLuint, GLuint, GLuint)’ redeclared as different kind of entity 1152 | GL_APICALL void GL_APIENTRY glUniform3ui (GLint location, GLuint v0, GLuint v1, GLuint v2); | ^ /usr/include/GL/glew.h:22532:37: note: previous declaration ‘void (* __glewUniform3ui)(GLint, GLuint, GLuint, GLuint)’ 22532 | GLEW_FUN_EXPORT PFNGLUNIFORM3UIPROC __glewUniform3ui; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1153:101: error: ‘void __glewUniform4ui(GLint, GLuint, GLuint, GLuint, GLuint)’ redeclared as different kind of entity 1153 | GL_APICALL void GL_APIENTRY glUniform4ui (GLint location, GLuint v0, GLuint v1, GLuint v2, GLuint v3); | ^ /usr/include/GL/glew.h:22534:37: note: previous declaration ‘void (* __glewUniform4ui)(GLint, GLuint, GLuint, GLuint, GLuint)’ 22534 | GLEW_FUN_EXPORT PFNGLUNIFORM4UIPROC __glewUniform4ui; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1154:94: error: ‘void __glewUniform1uiv(GLint, GLsizei, const GLuint*)’ redeclared as different kind of entity 1154 | GL_APICALL void GL_APIENTRY glUniform1uiv (GLint location, GLsizei count, const GLuint *value); | ^ /usr/include/GL/glew.h:22529:38: note: previous declaration ‘void (* __glewUniform1uiv)(GLint, GLsizei, const GLuint*)’ 22529 | GLEW_FUN_EXPORT PFNGLUNIFORM1UIVPROC __glewUniform1uiv; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1155:94: error: ‘void __glewUniform2uiv(GLint, GLsizei, const GLuint*)’ redeclared as different kind of entity 1155 | GL_APICALL void GL_APIENTRY glUniform2uiv (GLint location, GLsizei count, const GLuint *value); | ^ /usr/include/GL/glew.h:22531:38: note: previous declaration ‘void (* __glewUniform2uiv)(GLint, GLsizei, const GLuint*)’ 22531 | GLEW_FUN_EXPORT PFNGLUNIFORM2UIVPROC __glewUniform2uiv; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1156:94: error: ‘void __glewUniform3uiv(GLint, GLsizei, const GLuint*)’ redeclared as different kind of entity 1156 | GL_APICALL void GL_APIENTRY glUniform3uiv (GLint location, GLsizei count, const GLuint *value); | ^ /usr/include/GL/glew.h:22533:38: note: previous declaration ‘void (* __glewUniform3uiv)(GLint, GLsizei, const GLuint*)’ 22533 | GLEW_FUN_EXPORT PFNGLUNIFORM3UIVPROC __glewUniform3uiv; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1157:94: error: ‘void __glewUniform4uiv(GLint, GLsizei, const GLuint*)’ redeclared as different kind of entity 1157 | GL_APICALL void GL_APIENTRY glUniform4uiv (GLint location, GLsizei count, const GLuint *value); | ^ /usr/include/GL/glew.h:22535:38: note: previous declaration ‘void (* __glewUniform4uiv)(GLint, GLsizei, const GLuint*)’ 22535 | GLEW_FUN_EXPORT PFNGLUNIFORM4UIVPROC __glewUniform4uiv; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1158:97: error: ‘void __glewClearBufferiv(GLenum, GLint, const GLint*)’ redeclared as different kind of entity 1158 | GL_APICALL void GL_APIENTRY glClearBufferiv (GLenum buffer, GLint drawbuffer, const GLint *value); | ^ /usr/include/GL/glew.h:22508:40: note: previous declaration ‘void (* __glewClearBufferiv)(GLenum, GLint, const GLint*)’ 22508 | GLEW_FUN_EXPORT PFNGLCLEARBUFFERIVPROC __glewClearBufferiv; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1159:99: error: ‘void __glewClearBufferuiv(GLenum, GLint, const GLuint*)’ redeclared as different kind of entity 1159 | GL_APICALL void GL_APIENTRY glClearBufferuiv (GLenum buffer, GLint drawbuffer, const GLuint *value); | ^ /usr/include/GL/glew.h:22509:41: note: previous declaration ‘void (* __glewClearBufferuiv)(GLenum, GLint, const GLuint*)’ 22509 | GLEW_FUN_EXPORT PFNGLCLEARBUFFERUIVPROC __glewClearBufferuiv; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1160:99: error: ‘void __glewClearBufferfv(GLenum, GLint, const GLfloat*)’ redeclared as different kind of entity 1160 | GL_APICALL void GL_APIENTRY glClearBufferfv (GLenum buffer, GLint drawbuffer, const GLfloat *value); | ^ /usr/include/GL/glew.h:22507:40: note: previous declaration ‘void (* __glewClearBufferfv)(GLenum, GLint, const GLfloat*)’ 22507 | GLEW_FUN_EXPORT PFNGLCLEARBUFFERFVPROC __glewClearBufferfv; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1161:107: error: ‘void __glewClearBufferfi(GLenum, GLint, GLfloat, GLint)’ redeclared as different kind of entity 1161 | GL_APICALL void GL_APIENTRY glClearBufferfi (GLenum buffer, GLint drawbuffer, GLfloat depth, GLint stencil); | ^ /usr/include/GL/glew.h:22506:40: note: previous declaration ‘void (* __glewClearBufferfi)(GLenum, GLint, GLfloat, GLint)’ 22506 | GLEW_FUN_EXPORT PFNGLCLEARBUFFERFIPROC __glewClearBufferfi; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1162:78: error: ‘const GLubyte* __glewGetStringi(GLenum, GLuint)’ redeclared as different kind of entity 1162 | GL_APICALL const GLubyte *GL_APIENTRY glGetStringi (GLenum name, GLuint index); | ^ /usr/include/GL/glew.h:22517:37: note: previous declaration ‘const GLubyte* (* __glewGetStringi)(GLenum, GLuint)’ 22517 | GLEW_FUN_EXPORT PFNGLGETSTRINGIPROC __glewGetStringi; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1163:147: error: ‘void __glewCopyBufferSubData(GLenum, GLenum, GLintptr, GLintptr, GLsizeiptr)’ redeclared as different kind of entity 1163 | GL_APICALL void GL_APIENTRY glCopyBufferSubData (GLenum readTarget, GLenum writeTarget, GLintptr readOffset, GLintptr writeOffset, GLsizeiptr size); | ^ /usr/include/GL/glew.h:22769:44: note: previous declaration ‘void (* __glewCopyBufferSubData)(GLenum, GLenum, GLintptr, GLintptr, GLsizeiptr)’ 22769 | GLEW_FUN_EXPORT PFNGLCOPYBUFFERSUBDATAPROC __glewCopyBufferSubData; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1164:144: error: ‘void __glewGetUniformIndices(GLuint, GLsizei, const GLchar* const*, GLuint*)’ redeclared as different kind of entity 1164 | GL_APICALL void GL_APIENTRY glGetUniformIndices (GLuint program, GLsizei uniformCount, const GLchar *const*uniformNames, GLuint *uniformIndices); | ^ /usr/include/GL/glew.h:23363:44: note: previous declaration ‘void (* __glewGetUniformIndices)(GLuint, GLsizei, const GLchar* const*, GLuint*)’ 23363 | GLEW_FUN_EXPORT PFNGLGETUNIFORMINDICESPROC __glewGetUniformIndices; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1165:147: error: ‘void __glewGetActiveUniformsiv(GLuint, GLsizei, const GLuint*, GLenum, GLint*)’ redeclared as different kind of entity 1165 | GL_APICALL void GL_APIENTRY glGetActiveUniformsiv (GLuint program, GLsizei uniformCount, const GLuint *uniformIndices, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:23360:46: note: previous declaration ‘void (* __glewGetActiveUniformsiv)(GLuint, GLsizei, const GLuint*, GLenum, GLint*)’ 23360 | GLEW_FUN_EXPORT PFNGLGETACTIVEUNIFORMSIVPROC __glewGetActiveUniformsiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1166:101: error: ‘GLuint __glewGetUniformBlockIndex(GLuint, const GLchar*)’ redeclared as different kind of entity 1166 | GL_APICALL GLuint GL_APIENTRY glGetUniformBlockIndex (GLuint program, const GLchar *uniformBlockName); | ^ /usr/include/GL/glew.h:23362:47: note: previous declaration ‘GLuint (* __glewGetUniformBlockIndex)(GLuint, const GLchar*)’ 23362 | GLEW_FUN_EXPORT PFNGLGETUNIFORMBLOCKINDEXPROC __glewGetUniformBlockIndex; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1167:125: error: ‘void __glewGetActiveUniformBlockiv(GLuint, GLuint, GLenum, GLint*)’ redeclared as different kind of entity 1167 | GL_APICALL void GL_APIENTRY glGetActiveUniformBlockiv (GLuint program, GLuint uniformBlockIndex, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:23358:50: note: previous declaration ‘void (* __glewGetActiveUniformBlockiv)(GLuint, GLuint, GLenum, GLint*)’ 23358 | GLEW_FUN_EXPORT PFNGLGETACTIVEUNIFORMBLOCKIVPROC __glewGetActiveUniformBlockiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1168:158: error: ‘void __glewGetActiveUniformBlockName(GLuint, GLuint, GLsizei, GLsizei*, GLchar*)’ redeclared as different kind of entity 1168 | GL_APICALL void GL_APIENTRY glGetActiveUniformBlockName (GLuint program, GLuint uniformBlockIndex, GLsizei bufSize, GLsizei *length, GLchar *uniformBlockName); | ^ /usr/include/GL/glew.h:23357:52: note: previous declaration ‘void (* __glewGetActiveUniformBlockName)(GLuint, GLuint, GLsizei, GLsizei*, GLchar*)’ 23357 | GLEW_FUN_EXPORT PFNGLGETACTIVEUNIFORMBLOCKNAMEPROC __glewGetActiveUniformBlockName; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1169:120: error: ‘void __glewUniformBlockBinding(GLuint, GLuint, GLuint)’ redeclared as different kind of entity 1169 | GL_APICALL void GL_APIENTRY glUniformBlockBinding (GLuint program, GLuint uniformBlockIndex, GLuint uniformBlockBinding); | ^ /usr/include/GL/glew.h:23364:46: note: previous declaration ‘void (* __glewUniformBlockBinding)(GLuint, GLuint, GLuint)’ 23364 | GLEW_FUN_EXPORT PFNGLUNIFORMBLOCKBINDINGPROC __glewUniformBlockBinding; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1170:114: error: ‘void __glewDrawArraysInstanced(GLenum, GLint, GLsizei, GLsizei)’ redeclared as different kind of entity 1170 | GL_APICALL void GL_APIENTRY glDrawArraysInstanced (GLenum mode, GLint first, GLsizei count, GLsizei instancecount); | ^ /usr/include/GL/glew.h:22558:46: note: previous declaration ‘void (* __glewDrawArraysInstanced)(GLenum, GLint, GLsizei, GLsizei)’ 22558 | GLEW_FUN_EXPORT PFNGLDRAWARRAYSINSTANCEDPROC __glewDrawArraysInstanced; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1171:137: error: ‘void __glewDrawElementsInstanced(GLenum, GLsizei, GLenum, const void*, GLsizei)’ redeclared as different kind of entity 1171 | GL_APICALL void GL_APIENTRY glDrawElementsInstanced (GLenum mode, GLsizei count, GLenum type, const void *indices, GLsizei instancecount); | ^ /usr/include/GL/glew.h:22559:48: note: previous declaration ‘void (* __glewDrawElementsInstanced)(GLenum, GLsizei, GLenum, const void*, GLsizei)’ 22559 | GLEW_FUN_EXPORT PFNGLDRAWELEMENTSINSTANCEDPROC __glewDrawElementsInstanced; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1172:78: error: ‘__GLsync* __glewFenceSync(GLenum, GLbitfield)’ redeclared as different kind of entity 1172 | GL_APICALL GLsync GL_APIENTRY glFenceSync (GLenum condition, GLbitfield flags); | ^ /usr/include/GL/glew.h:23290:36: note: previous declaration ‘__GLsync* (* __glewFenceSync)(GLenum, GLbitfield)’ 23290 | GLEW_FUN_EXPORT PFNGLFENCESYNCPROC __glewFenceSync; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1173:55: error: ‘GLboolean __glewIsSync(GLsync)’ redeclared as different kind of entity 1173 | GL_APICALL GLboolean GL_APIENTRY glIsSync (GLsync sync); | ^ /usr/include/GL/glew.h:23293:33: note: previous declaration ‘GLboolean (* __glewIsSync)(GLsync)’ 23293 | GLEW_FUN_EXPORT PFNGLISSYNCPROC __glewIsSync; | ^~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1174:54: error: ‘void __glewDeleteSync(GLsync)’ redeclared as different kind of entity 1174 | GL_APICALL void GL_APIENTRY glDeleteSync (GLsync sync); | ^ /usr/include/GL/glew.h:23289:37: note: previous declaration ‘void (* __glewDeleteSync)(GLsync)’ 23289 | GLEW_FUN_EXPORT PFNGLDELETESYNCPROC __glewDeleteSync; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1175:96: error: ‘GLenum __glewClientWaitSync(GLsync, GLbitfield, GLuint64)’ redeclared as different kind of entity 1175 | GL_APICALL GLenum GL_APIENTRY glClientWaitSync (GLsync sync, GLbitfield flags, GLuint64 timeout); | ^ /usr/include/GL/glew.h:23288:41: note: previous declaration ‘GLenum (* __glewClientWaitSync)(GLsync, GLbitfield, GLuint64)’ 23288 | GLEW_FUN_EXPORT PFNGLCLIENTWAITSYNCPROC __glewClientWaitSync; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1176:88: error: ‘void __glewWaitSync(GLsync, GLbitfield, GLuint64)’ redeclared as different kind of entity 1176 | GL_APICALL void GL_APIENTRY glWaitSync (GLsync sync, GLbitfield flags, GLuint64 timeout); | ^ /usr/include/GL/glew.h:23294:35: note: previous declaration ‘void (* __glewWaitSync)(GLsync, GLbitfield, GLuint64)’ 23294 | GLEW_FUN_EXPORT PFNGLWAITSYNCPROC __glewWaitSync; | ^~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1177:73: error: ‘void __glewGetInteger64v(GLenum, GLint64*)’ redeclared as different kind of entity 1177 | GL_APICALL void GL_APIENTRY glGetInteger64v (GLenum pname, GLint64 *data); | ^ /usr/include/GL/glew.h:23291:40: note: previous declaration ‘void (* __glewGetInteger64v)(GLenum, GLint64*)’ 23291 | GLEW_FUN_EXPORT PFNGLGETINTEGER64VPROC __glewGetInteger64v; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1178:116: error: ‘void __glewGetSynciv(GLsync, GLenum, GLsizei, GLsizei*, GLint*)’ redeclared as different kind of entity 1178 | GL_APICALL void GL_APIENTRY glGetSynciv (GLsync sync, GLenum pname, GLsizei bufSize, GLsizei *length, GLint *values); | ^ /usr/include/GL/glew.h:23292:36: note: previous declaration ‘void (* __glewGetSynciv)(GLsync, GLenum, GLsizei, GLsizei*, GLint*)’ 23292 | GLEW_FUN_EXPORT PFNGLGETSYNCIVPROC __glewGetSynciv; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1179:90: error: ‘void __glewGetInteger64i_v(GLenum, GLuint, GLint64*)’ redeclared as different kind of entity 1179 | GL_APICALL void GL_APIENTRY glGetInteger64i_v (GLenum target, GLuint index, GLint64 *data); | ^ /usr/include/GL/glew.h:22565:42: note: previous declaration ‘void (* __glewGetInteger64i_v)(GLenum, GLuint, GLint64*)’ 22565 | GLEW_FUN_EXPORT PFNGLGETINTEGER64I_VPROC __glewGetInteger64i_v; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1180:99: error: ‘void __glewGetBufferParameteri64v(GLenum, GLenum, GLint64*)’ redeclared as different kind of entity 1180 | GL_APICALL void GL_APIENTRY glGetBufferParameteri64v (GLenum target, GLenum pname, GLint64 *params); | ^ /usr/include/GL/glew.h:22564:49: note: previous declaration ‘void (* __glewGetBufferParameteri64v)(GLenum, GLenum, GLint64*)’ 22564 | GLEW_FUN_EXPORT PFNGLGETBUFFERPARAMETERI64VPROC __glewGetBufferParameteri64v; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1181:75: error: ‘void __glewGenSamplers(GLsizei, GLuint*)’ redeclared as different kind of entity 1181 | GL_APICALL void GL_APIENTRY glGenSamplers (GLsizei count, GLuint *samplers); | ^ /usr/include/GL/glew.h:23147:38: note: previous declaration ‘void (* __glewGenSamplers)(GLsizei, GLuint*)’ 23147 | GLEW_FUN_EXPORT PFNGLGENSAMPLERSPROC __glewGenSamplers; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1182:84: error: ‘void __glewDeleteSamplers(GLsizei, const GLuint*)’ redeclared as different kind of entity 1182 | GL_APICALL void GL_APIENTRY glDeleteSamplers (GLsizei count, const GLuint *samplers); | ^ /usr/include/GL/glew.h:23146:41: note: previous declaration ‘void (* __glewDeleteSamplers)(GLsizei, const GLuint*)’ 23146 | GLEW_FUN_EXPORT PFNGLDELETESAMPLERSPROC __glewDeleteSamplers; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1183:61: error: ‘GLboolean __glewIsSampler(GLuint)’ redeclared as different kind of entity 1183 | GL_APICALL GLboolean GL_APIENTRY glIsSampler (GLuint sampler); | ^ /usr/include/GL/glew.h:23152:36: note: previous declaration ‘GLboolean (* __glewIsSampler)(GLuint)’ 23152 | GLEW_FUN_EXPORT PFNGLISSAMPLERPROC __glewIsSampler; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1184:71: error: ‘void __glewBindSampler(GLuint, GLuint)’ redeclared as different kind of entity 1184 | GL_APICALL void GL_APIENTRY glBindSampler (GLuint unit, GLuint sampler); | ^ /usr/include/GL/glew.h:23145:38: note: previous declaration ‘void (* __glewBindSampler)(GLuint, GLuint)’ 23145 | GLEW_FUN_EXPORT PFNGLBINDSAMPLERPROC __glewBindSampler; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1185:91: error: ‘void __glewSamplerParameteri(GLuint, GLenum, GLint)’ redeclared as different kind of entity 1185 | GL_APICALL void GL_APIENTRY glSamplerParameteri (GLuint sampler, GLenum pname, GLint param); | ^ /usr/include/GL/glew.h:23157:44: note: previous declaration ‘void (* __glewSamplerParameteri)(GLuint, GLenum, GLint)’ 23157 | GLEW_FUN_EXPORT PFNGLSAMPLERPARAMETERIPROC __glewSamplerParameteri; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1186:99: error: ‘void __glewSamplerParameteriv(GLuint, GLenum, const GLint*)’ redeclared as different kind of entity 1186 | GL_APICALL void GL_APIENTRY glSamplerParameteriv (GLuint sampler, GLenum pname, const GLint *param); | ^ /usr/include/GL/glew.h:23158:45: note: previous declaration ‘void (* __glewSamplerParameteriv)(GLuint, GLenum, const GLint*)’ 23158 | GLEW_FUN_EXPORT PFNGLSAMPLERPARAMETERIVPROC __glewSamplerParameteriv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1187:93: error: ‘void __glewSamplerParameterf(GLuint, GLenum, GLfloat)’ redeclared as different kind of entity 1187 | GL_APICALL void GL_APIENTRY glSamplerParameterf (GLuint sampler, GLenum pname, GLfloat param); | ^ /usr/include/GL/glew.h:23155:44: note: previous declaration ‘void (* __glewSamplerParameterf)(GLuint, GLenum, GLfloat)’ 23155 | GLEW_FUN_EXPORT PFNGLSAMPLERPARAMETERFPROC __glewSamplerParameterf; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1188:101: error: ‘void __glewSamplerParameterfv(GLuint, GLenum, const GLfloat*)’ redeclared as different kind of entity 1188 | GL_APICALL void GL_APIENTRY glSamplerParameterfv (GLuint sampler, GLenum pname, const GLfloat *param); | ^ /usr/include/GL/glew.h:23156:45: note: previous declaration ‘void (* __glewSamplerParameterfv)(GLuint, GLenum, const GLfloat*)’ 23156 | GLEW_FUN_EXPORT PFNGLSAMPLERPARAMETERFVPROC __glewSamplerParameterfv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1189:97: error: ‘void __glewGetSamplerParameteriv(GLuint, GLenum, GLint*)’ redeclared as different kind of entity 1189 | GL_APICALL void GL_APIENTRY glGetSamplerParameteriv (GLuint sampler, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:23151:48: note: previous declaration ‘void (* __glewGetSamplerParameteriv)(GLuint, GLenum, GLint*)’ 23151 | GLEW_FUN_EXPORT PFNGLGETSAMPLERPARAMETERIVPROC __glewGetSamplerParameteriv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1190:99: error: ‘void __glewGetSamplerParameterfv(GLuint, GLenum, GLfloat*)’ redeclared as different kind of entity 1190 | GL_APICALL void GL_APIENTRY glGetSamplerParameterfv (GLuint sampler, GLenum pname, GLfloat *params); | ^ /usr/include/GL/glew.h:23150:48: note: previous declaration ‘void (* __glewGetSamplerParameterfv)(GLuint, GLenum, GLfloat*)’ 23150 | GLEW_FUN_EXPORT PFNGLGETSAMPLERPARAMETERFVPROC __glewGetSamplerParameterfv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1191:80: error: ‘void __glewVertexAttribDivisor(GLuint, GLuint)’ redeclared as different kind of entity 1191 | GL_APICALL void GL_APIENTRY glVertexAttribDivisor (GLuint index, GLuint divisor); | ^ /usr/include/GL/glew.h:22567:46: note: previous declaration ‘void (* __glewVertexAttribDivisor)(GLuint, GLuint)’ 22567 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBDIVISORPROC __glewVertexAttribDivisor; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1192:78: error: ‘void __glewBindTransformFeedback(GLenum, GLuint)’ redeclared as different kind of entity 1192 | GL_APICALL void GL_APIENTRY glBindTransformFeedback (GLenum target, GLuint id); | ^ /usr/include/GL/glew.h:23334:48: note: previous declaration ‘void (* __glewBindTransformFeedback)(GLenum, GLuint)’ 23334 | GLEW_FUN_EXPORT PFNGLBINDTRANSFORMFEEDBACKPROC __glewBindTransformFeedback; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1193:85: error: ‘void __glewDeleteTransformFeedbacks(GLsizei, const GLuint*)’ redeclared as different kind of entity 1193 | GL_APICALL void GL_APIENTRY glDeleteTransformFeedbacks (GLsizei n, const GLuint *ids); | ^ /usr/include/GL/glew.h:23335:51: note: previous declaration ‘void (* __glewDeleteTransformFeedbacks)(GLsizei, const GLuint*)’ 23335 | GLEW_FUN_EXPORT PFNGLDELETETRANSFORMFEEDBACKSPROC __glewDeleteTransformFeedbacks; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1194:76: error: ‘void __glewGenTransformFeedbacks(GLsizei, GLuint*)’ redeclared as different kind of entity 1194 | GL_APICALL void GL_APIENTRY glGenTransformFeedbacks (GLsizei n, GLuint *ids); | ^ /usr/include/GL/glew.h:23337:48: note: previous declaration ‘void (* __glewGenTransformFeedbacks)(GLsizei, GLuint*)’ 23337 | GLEW_FUN_EXPORT PFNGLGENTRANSFORMFEEDBACKSPROC __glewGenTransformFeedbacks; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1195:66: error: ‘GLboolean __glewIsTransformFeedback(GLuint)’ redeclared as different kind of entity 1195 | GL_APICALL GLboolean GL_APIENTRY glIsTransformFeedback (GLuint id); | ^ /usr/include/GL/glew.h:23338:46: note: previous declaration ‘GLboolean (* __glewIsTransformFeedback)(GLuint)’ 23338 | GLEW_FUN_EXPORT PFNGLISTRANSFORMFEEDBACKPROC __glewIsTransformFeedback; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1196:59: error: ‘void __glewPauseTransformFeedback()’ redeclared as different kind of entity 1196 | GL_APICALL void GL_APIENTRY glPauseTransformFeedback (void); | ^ /usr/include/GL/glew.h:23339:49: note: previous declaration ‘void (* __glewPauseTransformFeedback)()’ 23339 | GLEW_FUN_EXPORT PFNGLPAUSETRANSFORMFEEDBACKPROC __glewPauseTransformFeedback; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1197:60: error: ‘void __glewResumeTransformFeedback()’ redeclared as different kind of entity 1197 | GL_APICALL void GL_APIENTRY glResumeTransformFeedback (void); | ^ /usr/include/GL/glew.h:23340:50: note: previous declaration ‘void (* __glewResumeTransformFeedback)()’ 23340 | GLEW_FUN_EXPORT PFNGLRESUMETRANSFORMFEEDBACKPROC __glewResumeTransformFeedback; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1198:133: error: ‘void __glewGetProgramBinary(GLuint, GLsizei, GLsizei*, GLenum*, void*)’ redeclared as different kind of entity 1198 | GL_APICALL void GL_APIENTRY glGetProgramBinary (GLuint program, GLsizei bufSize, GLsizei *length, GLenum *binaryFormat, void *binary); | ^ /usr/include/GL/glew.h:22922:43: note: previous declaration ‘void (* __glewGetProgramBinary)(GLuint, GLsizei, GLsizei*, GLenum*, void*)’ 22922 | GLEW_FUN_EXPORT PFNGLGETPROGRAMBINARYPROC __glewGetProgramBinary; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1199:117: error: ‘void __glewProgramBinary(GLuint, GLenum, const void*, GLsizei)’ redeclared as different kind of entity 1199 | GL_APICALL void GL_APIENTRY glProgramBinary (GLuint program, GLenum binaryFormat, const void *binary, GLsizei length); | ^ /usr/include/GL/glew.h:22923:40: note: previous declaration ‘void (* __glewProgramBinary)(GLuint, GLenum, const void*, GLsizei)’ 22923 | GLEW_FUN_EXPORT PFNGLPROGRAMBINARYPROC __glewProgramBinary; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1200:91: error: ‘void __glewProgramParameteri(GLuint, GLenum, GLint)’ redeclared as different kind of entity 1200 | GL_APICALL void GL_APIENTRY glProgramParameteri (GLuint program, GLenum pname, GLint value); | ^ /usr/include/GL/glew.h:22924:44: note: previous declaration ‘void (* __glewProgramParameteri)(GLuint, GLenum, GLint)’ 22924 | GLEW_FUN_EXPORT PFNGLPROGRAMPARAMETERIPROC __glewProgramParameteri; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1201:118: error: ‘void __glewInvalidateFramebuffer(GLenum, GLsizei, const GLenum*)’ redeclared as different kind of entity 1201 | GL_APICALL void GL_APIENTRY glInvalidateFramebuffer (GLenum target, GLsizei numAttachments, const GLenum *attachments); | ^ /usr/include/GL/glew.h:23033:48: note: previous declaration ‘void (* __glewInvalidateFramebuffer)(GLenum, GLsizei, const GLenum*)’ 23033 | GLEW_FUN_EXPORT PFNGLINVALIDATEFRAMEBUFFERPROC __glewInvalidateFramebuffer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1202:170: error: ‘void __glewInvalidateSubFramebuffer(GLenum, GLsizei, const GLenum*, GLint, GLint, GLsizei, GLsizei)’ redeclared as different kind of entity 1202 | GL_APICALL void GL_APIENTRY glInvalidateSubFramebuffer (GLenum target, GLsizei numAttachments, const GLenum *attachments, GLint x, GLint y, GLsizei width, GLsizei height); | ^ /usr/include/GL/glew.h:23034:51: note: previous declaration ‘void (* __glewInvalidateSubFramebuffer)(GLenum, GLsizei, const GLenum*, GLint, GLint, GLsizei, GLsizei)’ 23034 | GLEW_FUN_EXPORT PFNGLINVALIDATESUBFRAMEBUFFERPROC __glewInvalidateSubFramebuffer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1203:128: error: ‘void __glewTexStorage2D(GLenum, GLsizei, GLenum, GLsizei, GLsizei)’ redeclared as different kind of entity 1203 | GL_APICALL void GL_APIENTRY glTexStorage2D (GLenum target, GLsizei levels, GLenum internalformat, GLsizei width, GLsizei height); | ^ /usr/include/GL/glew.h:23320:39: note: previous declaration ‘void (* __glewTexStorage2D)(GLenum, GLsizei, GLenum, GLsizei, GLsizei)’ 23320 | GLEW_FUN_EXPORT PFNGLTEXSTORAGE2DPROC __glewTexStorage2D; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1204:143: error: ‘void __glewTexStorage3D(GLenum, GLsizei, GLenum, GLsizei, GLsizei, GLsizei)’ redeclared as different kind of entity 1204 | GL_APICALL void GL_APIENTRY glTexStorage3D (GLenum target, GLsizei levels, GLenum internalformat, GLsizei width, GLsizei height, GLsizei depth); | ^ /usr/include/GL/glew.h:23321:39: note: previous declaration ‘void (* __glewTexStorage3D)(GLenum, GLsizei, GLenum, GLsizei, GLsizei, GLsizei)’ 23321 | GLEW_FUN_EXPORT PFNGLTEXSTORAGE3DPROC __glewTexStorage3D; | ^~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1205:134: error: ‘void __glewGetInternalformativ(GLenum, GLenum, GLenum, GLsizei, GLint*)’ redeclared as different kind of entity 1205 | GL_APICALL void GL_APIENTRY glGetInternalformativ (GLenum target, GLenum internalformat, GLenum pname, GLsizei bufSize, GLint *params); | ^ /usr/include/GL/glew.h:23027:46: note: previous declaration ‘void (* __glewGetInternalformativ)(GLenum, GLenum, GLenum, GLsizei, GLint*)’ 23027 | GLEW_FUN_EXPORT PFNGLGETINTERNALFORMATIVPROC __glewGetInternalformativ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1453:109: error: ‘void __glewDispatchCompute(GLuint, GLuint, GLuint)’ redeclared as different kind of entity 1453 | GL_APICALL void GL_APIENTRY glDispatchCompute (GLuint num_groups_x, GLuint num_groups_y, GLuint num_groups_z); | ^ /usr/include/GL/glew.h:22764:42: note: previous declaration ‘void (* __glewDispatchCompute)(GLuint, GLuint, GLuint)’ 22764 | GLEW_FUN_EXPORT PFNGLDISPATCHCOMPUTEPROC __glewDispatchCompute; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1454:73: error: ‘void __glewDispatchComputeIndirect(GLintptr)’ redeclared as different kind of entity 1454 | GL_APICALL void GL_APIENTRY glDispatchComputeIndirect (GLintptr indirect); | ^ /usr/include/GL/glew.h:22765:50: note: previous declaration ‘void (* __glewDispatchComputeIndirect)(GLintptr)’ 22765 | GLEW_FUN_EXPORT PFNGLDISPATCHCOMPUTEINDIRECTPROC __glewDispatchComputeIndirect; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1455:84: error: ‘void __glewDrawArraysIndirect(GLenum, const void*)’ redeclared as different kind of entity 1455 | GL_APICALL void GL_APIENTRY glDrawArraysIndirect (GLenum mode, const void *indirect); | ^ /usr/include/GL/glew.h:22888:45: note: previous declaration ‘void (* __glewDrawArraysIndirect)(GLenum, const void*)’ 22888 | GLEW_FUN_EXPORT PFNGLDRAWARRAYSINDIRECTPROC __glewDrawArraysIndirect; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1456:99: error: ‘void __glewDrawElementsIndirect(GLenum, GLenum, const void*)’ redeclared as different kind of entity 1456 | GL_APICALL void GL_APIENTRY glDrawElementsIndirect (GLenum mode, GLenum type, const void *indirect); | ^ /usr/include/GL/glew.h:22889:47: note: previous declaration ‘void (* __glewDrawElementsIndirect)(GLenum, GLenum, const void*)’ 22889 | GLEW_FUN_EXPORT PFNGLDRAWELEMENTSINDIRECTPROC __glewDrawElementsIndirect; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1457:94: error: ‘void __glewFramebufferParameteri(GLenum, GLenum, GLint)’ redeclared as different kind of entity 1457 | GL_APICALL void GL_APIENTRY glFramebufferParameteri (GLenum target, GLenum pname, GLint param); | ^ /usr/include/GL/glew.h:22891:48: note: previous declaration ‘void (* __glewFramebufferParameteri)(GLenum, GLenum, GLint)’ 22891 | GLEW_FUN_EXPORT PFNGLFRAMEBUFFERPARAMETERIPROC __glewFramebufferParameteri; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1458:100: error: ‘void __glewGetFramebufferParameteriv(GLenum, GLenum, GLint*)’ redeclared as different kind of entity 1458 | GL_APICALL void GL_APIENTRY glGetFramebufferParameteriv (GLenum target, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22892:52: note: previous declaration ‘void (* __glewGetFramebufferParameteriv)(GLenum, GLenum, GLint*)’ 22892 | GLEW_FUN_EXPORT PFNGLGETFRAMEBUFFERPARAMETERIVPROC __glewGetFramebufferParameteriv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1459:122: error: ‘void __glewGetProgramInterfaceiv(GLuint, GLenum, GLenum, GLint*)’ redeclared as different kind of entity 1459 | GL_APICALL void GL_APIENTRY glGetProgramInterfaceiv (GLuint program, GLenum programInterface, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:23110:48: note: previous declaration ‘void (* __glewGetProgramInterfaceiv)(GLuint, GLenum, GLenum, GLint*)’ 23110 | GLEW_FUN_EXPORT PFNGLGETPROGRAMINTERFACEIVPROC __glewGetProgramInterfaceiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1460:117: error: ‘GLuint __glewGetProgramResourceIndex(GLuint, GLenum, const GLchar*)’ redeclared as different kind of entity 1460 | GL_APICALL GLuint GL_APIENTRY glGetProgramResourceIndex (GLuint program, GLenum programInterface, const GLchar *name); | ^ /usr/include/GL/glew.h:23111:50: note: previous declaration ‘GLuint (* __glewGetProgramResourceIndex)(GLuint, GLenum, const GLchar*)’ 23111 | GLEW_FUN_EXPORT PFNGLGETPROGRAMRESOURCEINDEXPROC __glewGetProgramResourceIndex; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1461:156: error: ‘void __glewGetProgramResourceName(GLuint, GLenum, GLuint, GLsizei, GLsizei*, GLchar*)’ redeclared as different kind of entity 1461 | GL_APICALL void GL_APIENTRY glGetProgramResourceName (GLuint program, GLenum programInterface, GLuint index, GLsizei bufSize, GLsizei *length, GLchar *name); | ^ /usr/include/GL/glew.h:23114:49: note: previous declaration ‘void (* __glewGetProgramResourceName)(GLuint, GLenum, GLuint, GLsizei, GLsizei*, GLchar*)’ 23114 | GLEW_FUN_EXPORT PFNGLGETPROGRAMRESOURCENAMEPROC __glewGetProgramResourceName; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1462:195: error: ‘void __glewGetProgramResourceiv(GLuint, GLenum, GLuint, GLsizei, const GLenum*, GLsizei, GLsizei*, GLint*)’ redeclared as different kind of entity 1462 | GL_APICALL void GL_APIENTRY glGetProgramResourceiv (GLuint program, GLenum programInterface, GLuint index, GLsizei propCount, const GLenum *props, GLsizei bufSize, GLsizei *length, GLint *params); | ^ /usr/include/GL/glew.h:23115:47: note: previous declaration ‘void (* __glewGetProgramResourceiv)(GLuint, GLenum, GLuint, GLsizei, const GLenum*, GLsizei, GLsizei*, GLint*)’ 23115 | GLEW_FUN_EXPORT PFNGLGETPROGRAMRESOURCEIVPROC __glewGetProgramResourceiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1463:119: error: ‘GLint __glewGetProgramResourceLocation(GLuint, GLenum, const GLchar*)’ redeclared as different kind of entity 1463 | GL_APICALL GLint GL_APIENTRY glGetProgramResourceLocation (GLuint program, GLenum programInterface, const GLchar *name); | ^ /usr/include/GL/glew.h:23112:53: note: previous declaration ‘GLint (* __glewGetProgramResourceLocation)(GLuint, GLenum, const GLchar*)’ 23112 | GLEW_FUN_EXPORT PFNGLGETPROGRAMRESOURCELOCATIONPROC __glewGetProgramResourceLocation; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1464:99: error: ‘void __glewUseProgramStages(GLuint, GLbitfield, GLuint)’ redeclared as different kind of entity 1464 | GL_APICALL void GL_APIENTRY glUseProgramStages (GLuint pipeline, GLbitfield stages, GLuint program); | ^ /usr/include/GL/glew.h:23218:43: note: previous declaration ‘void (* __glewUseProgramStages)(GLuint, GLbitfield, GLuint)’ 23218 | GLEW_FUN_EXPORT PFNGLUSEPROGRAMSTAGESPROC __glewUseProgramStages; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1465:83: error: ‘void __glewActiveShaderProgram(GLuint, GLuint)’ redeclared as different kind of entity 1465 | GL_APICALL void GL_APIENTRY glActiveShaderProgram (GLuint pipeline, GLuint program); | ^ /usr/include/GL/glew.h:23160:46: note: previous declaration ‘void (* __glewActiveShaderProgram)(GLuint, GLuint)’ 23160 | GLEW_FUN_EXPORT PFNGLACTIVESHADERPROGRAMPROC __glewActiveShaderProgram; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1466:110: error: ‘GLuint __glewCreateShaderProgramv(GLenum, GLsizei, const GLchar* const*)’ redeclared as different kind of entity 1466 | GL_APICALL GLuint GL_APIENTRY glCreateShaderProgramv (GLenum type, GLsizei count, const GLchar *const*strings); | ^ /usr/include/GL/glew.h:23162:47: note: previous declaration ‘GLuint (* __glewCreateShaderProgramv)(GLenum, GLsizei, const GLchar* const*)’ 23162 | GLEW_FUN_EXPORT PFNGLCREATESHADERPROGRAMVPROC __glewCreateShaderProgramv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1467:67: error: ‘void __glewBindProgramPipeline(GLuint)’ redeclared as different kind of entity 1467 | GL_APICALL void GL_APIENTRY glBindProgramPipeline (GLuint pipeline); | ^ /usr/include/GL/glew.h:23161:46: note: previous declaration ‘void (* __glewBindProgramPipeline)(GLuint)’ 23161 | GLEW_FUN_EXPORT PFNGLBINDPROGRAMPIPELINEPROC __glewBindProgramPipeline; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1468:89: error: ‘void __glewDeleteProgramPipelines(GLsizei, const GLuint*)’ redeclared as different kind of entity 1468 | GL_APICALL void GL_APIENTRY glDeleteProgramPipelines (GLsizei n, const GLuint *pipelines); | ^ /usr/include/GL/glew.h:23163:49: note: previous declaration ‘void (* __glewDeleteProgramPipelines)(GLsizei, const GLuint*)’ 23163 | GLEW_FUN_EXPORT PFNGLDELETEPROGRAMPIPELINESPROC __glewDeleteProgramPipelines; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1469:80: error: ‘void __glewGenProgramPipelines(GLsizei, GLuint*)’ redeclared as different kind of entity 1469 | GL_APICALL void GL_APIENTRY glGenProgramPipelines (GLsizei n, GLuint *pipelines); | ^ /usr/include/GL/glew.h:23164:46: note: previous declaration ‘void (* __glewGenProgramPipelines)(GLsizei, GLuint*)’ 23164 | GLEW_FUN_EXPORT PFNGLGENPROGRAMPIPELINESPROC __glewGenProgramPipelines; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1470:70: error: ‘GLboolean __glewIsProgramPipeline(GLuint)’ redeclared as different kind of entity 1470 | GL_APICALL GLboolean GL_APIENTRY glIsProgramPipeline (GLuint pipeline); | ^ /usr/include/GL/glew.h:23167:44: note: previous declaration ‘GLboolean (* __glewIsProgramPipeline)(GLuint)’ 23167 | GLEW_FUN_EXPORT PFNGLISPROGRAMPIPELINEPROC __glewIsProgramPipeline; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1471:97: error: ‘void __glewGetProgramPipelineiv(GLuint, GLenum, GLint*)’ redeclared as different kind of entity 1471 | GL_APICALL void GL_APIENTRY glGetProgramPipelineiv (GLuint pipeline, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:23166:47: note: previous declaration ‘void (* __glewGetProgramPipelineiv)(GLuint, GLenum, GLint*)’ 23166 | GLEW_FUN_EXPORT PFNGLGETPROGRAMPIPELINEIVPROC __glewGetProgramPipelineiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1472:89: error: ‘void __glewProgramUniform1i(GLuint, GLint, GLint)’ redeclared as different kind of entity 1472 | GL_APICALL void GL_APIENTRY glProgramUniform1i (GLuint program, GLint location, GLint v0); | ^ /usr/include/GL/glew.h:23172:43: note: previous declaration ‘void (* __glewProgramUniform1i)(GLuint, GLint, GLint)’ 23172 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM1IPROC __glewProgramUniform1i; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1473:99: error: ‘void __glewProgramUniform2i(GLuint, GLint, GLint, GLint)’ redeclared as different kind of entity 1473 | GL_APICALL void GL_APIENTRY glProgramUniform2i (GLuint program, GLint location, GLint v0, GLint v1); | ^ /usr/include/GL/glew.h:23180:43: note: previous declaration ‘void (* __glewProgramUniform2i)(GLuint, GLint, GLint, GLint)’ 23180 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM2IPROC __glewProgramUniform2i; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1474:109: error: ‘void __glewProgramUniform3i(GLuint, GLint, GLint, GLint, GLint)’ redeclared as different kind of entity 1474 | GL_APICALL void GL_APIENTRY glProgramUniform3i (GLuint program, GLint location, GLint v0, GLint v1, GLint v2); | ^ /usr/include/GL/glew.h:23188:43: note: previous declaration ‘void (* __glewProgramUniform3i)(GLuint, GLint, GLint, GLint, GLint)’ 23188 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM3IPROC __glewProgramUniform3i; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1475:119: error: ‘void __glewProgramUniform4i(GLuint, GLint, GLint, GLint, GLint, GLint)’ redeclared as different kind of entity 1475 | GL_APICALL void GL_APIENTRY glProgramUniform4i (GLuint program, GLint location, GLint v0, GLint v1, GLint v2, GLint v3); | ^ /usr/include/GL/glew.h:23196:43: note: previous declaration ‘void (* __glewProgramUniform4i)(GLuint, GLint, GLint, GLint, GLint, GLint)’ 23196 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM4IPROC __glewProgramUniform4i; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1476:91: error: ‘void __glewProgramUniform1ui(GLuint, GLint, GLuint)’ redeclared as different kind of entity 1476 | GL_APICALL void GL_APIENTRY glProgramUniform1ui (GLuint program, GLint location, GLuint v0); | ^ /usr/include/GL/glew.h:23174:44: note: previous declaration ‘void (* __glewProgramUniform1ui)(GLuint, GLint, GLuint)’ 23174 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM1UIPROC __glewProgramUniform1ui; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1477:102: error: ‘void __glewProgramUniform2ui(GLuint, GLint, GLuint, GLuint)’ redeclared as different kind of entity 1477 | GL_APICALL void GL_APIENTRY glProgramUniform2ui (GLuint program, GLint location, GLuint v0, GLuint v1); | ^ /usr/include/GL/glew.h:23182:44: note: previous declaration ‘void (* __glewProgramUniform2ui)(GLuint, GLint, GLuint, GLuint)’ 23182 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM2UIPROC __glewProgramUniform2ui; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1478:113: error: ‘void __glewProgramUniform3ui(GLuint, GLint, GLuint, GLuint, GLuint)’ redeclared as different kind of entity 1478 | GL_APICALL void GL_APIENTRY glProgramUniform3ui (GLuint program, GLint location, GLuint v0, GLuint v1, GLuint v2); | ^ /usr/include/GL/glew.h:23190:44: note: previous declaration ‘void (* __glewProgramUniform3ui)(GLuint, GLint, GLuint, GLuint, GLuint)’ 23190 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM3UIPROC __glewProgramUniform3ui; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1479:124: error: ‘void __glewProgramUniform4ui(GLuint, GLint, GLuint, GLuint, GLuint, GLuint)’ redeclared as different kind of entity 1479 | GL_APICALL void GL_APIENTRY glProgramUniform4ui (GLuint program, GLint location, GLuint v0, GLuint v1, GLuint v2, GLuint v3); | ^ /usr/include/GL/glew.h:23198:44: note: previous declaration ‘void (* __glewProgramUniform4ui)(GLuint, GLint, GLuint, GLuint, GLuint, GLuint)’ 23198 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM4UIPROC __glewProgramUniform4ui; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1480:91: error: ‘void __glewProgramUniform1f(GLuint, GLint, GLfloat)’ redeclared as different kind of entity 1480 | GL_APICALL void GL_APIENTRY glProgramUniform1f (GLuint program, GLint location, GLfloat v0); | ^ /usr/include/GL/glew.h:23170:43: note: previous declaration ‘void (* __glewProgramUniform1f)(GLuint, GLint, GLfloat)’ 23170 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM1FPROC __glewProgramUniform1f; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1481:103: error: ‘void __glewProgramUniform2f(GLuint, GLint, GLfloat, GLfloat)’ redeclared as different kind of entity 1481 | GL_APICALL void GL_APIENTRY glProgramUniform2f (GLuint program, GLint location, GLfloat v0, GLfloat v1); | ^ /usr/include/GL/glew.h:23178:43: note: previous declaration ‘void (* __glewProgramUniform2f)(GLuint, GLint, GLfloat, GLfloat)’ 23178 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM2FPROC __glewProgramUniform2f; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1482:115: error: ‘void __glewProgramUniform3f(GLuint, GLint, GLfloat, GLfloat, GLfloat)’ redeclared as different kind of entity 1482 | GL_APICALL void GL_APIENTRY glProgramUniform3f (GLuint program, GLint location, GLfloat v0, GLfloat v1, GLfloat v2); | ^ /usr/include/GL/glew.h:23186:43: note: previous declaration ‘void (* __glewProgramUniform3f)(GLuint, GLint, GLfloat, GLfloat, GLfloat)’ 23186 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM3FPROC __glewProgramUniform3f; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1483:127: error: ‘void __glewProgramUniform4f(GLuint, GLint, GLfloat, GLfloat, GLfloat, GLfloat)’ redeclared as different kind of entity 1483 | GL_APICALL void GL_APIENTRY glProgramUniform4f (GLuint program, GLint location, GLfloat v0, GLfloat v1, GLfloat v2, GLfloat v3); | ^ /usr/include/GL/glew.h:23194:43: note: previous declaration ‘void (* __glewProgramUniform4f)(GLuint, GLint, GLfloat, GLfloat, GLfloat, GLfloat)’ 23194 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM4FPROC __glewProgramUniform4f; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1484:115: error: ‘void __glewProgramUniform1iv(GLuint, GLint, GLsizei, const GLint*)’ redeclared as different kind of entity 1484 | GL_APICALL void GL_APIENTRY glProgramUniform1iv (GLuint program, GLint location, GLsizei count, const GLint *value); | ^ /usr/include/GL/glew.h:23173:44: note: previous declaration ‘void (* __glewProgramUniform1iv)(GLuint, GLint, GLsizei, const GLint*)’ 23173 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM1IVPROC __glewProgramUniform1iv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1485:115: error: ‘void __glewProgramUniform2iv(GLuint, GLint, GLsizei, const GLint*)’ redeclared as different kind of entity 1485 | GL_APICALL void GL_APIENTRY glProgramUniform2iv (GLuint program, GLint location, GLsizei count, const GLint *value); | ^ /usr/include/GL/glew.h:23181:44: note: previous declaration ‘void (* __glewProgramUniform2iv)(GLuint, GLint, GLsizei, const GLint*)’ 23181 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM2IVPROC __glewProgramUniform2iv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1486:115: error: ‘void __glewProgramUniform3iv(GLuint, GLint, GLsizei, const GLint*)’ redeclared as different kind of entity 1486 | GL_APICALL void GL_APIENTRY glProgramUniform3iv (GLuint program, GLint location, GLsizei count, const GLint *value); | ^ /usr/include/GL/glew.h:23189:44: note: previous declaration ‘void (* __glewProgramUniform3iv)(GLuint, GLint, GLsizei, const GLint*)’ 23189 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM3IVPROC __glewProgramUniform3iv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1487:115: error: ‘void __glewProgramUniform4iv(GLuint, GLint, GLsizei, const GLint*)’ redeclared as different kind of entity 1487 | GL_APICALL void GL_APIENTRY glProgramUniform4iv (GLuint program, GLint location, GLsizei count, const GLint *value); | ^ /usr/include/GL/glew.h:23197:44: note: previous declaration ‘void (* __glewProgramUniform4iv)(GLuint, GLint, GLsizei, const GLint*)’ 23197 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM4IVPROC __glewProgramUniform4iv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1488:117: error: ‘void __glewProgramUniform1uiv(GLuint, GLint, GLsizei, const GLuint*)’ redeclared as different kind of entity 1488 | GL_APICALL void GL_APIENTRY glProgramUniform1uiv (GLuint program, GLint location, GLsizei count, const GLuint *value); | ^ /usr/include/GL/glew.h:23175:45: note: previous declaration ‘void (* __glewProgramUniform1uiv)(GLuint, GLint, GLsizei, const GLuint*)’ 23175 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM1UIVPROC __glewProgramUniform1uiv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1489:117: error: ‘void __glewProgramUniform2uiv(GLuint, GLint, GLsizei, const GLuint*)’ redeclared as different kind of entity 1489 | GL_APICALL void GL_APIENTRY glProgramUniform2uiv (GLuint program, GLint location, GLsizei count, const GLuint *value); | ^ /usr/include/GL/glew.h:23183:45: note: previous declaration ‘void (* __glewProgramUniform2uiv)(GLuint, GLint, GLsizei, const GLuint*)’ 23183 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM2UIVPROC __glewProgramUniform2uiv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1490:117: error: ‘void __glewProgramUniform3uiv(GLuint, GLint, GLsizei, const GLuint*)’ redeclared as different kind of entity 1490 | GL_APICALL void GL_APIENTRY glProgramUniform3uiv (GLuint program, GLint location, GLsizei count, const GLuint *value); | ^ /usr/include/GL/glew.h:23191:45: note: previous declaration ‘void (* __glewProgramUniform3uiv)(GLuint, GLint, GLsizei, const GLuint*)’ 23191 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM3UIVPROC __glewProgramUniform3uiv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1491:117: error: ‘void __glewProgramUniform4uiv(GLuint, GLint, GLsizei, const GLuint*)’ redeclared as different kind of entity 1491 | GL_APICALL void GL_APIENTRY glProgramUniform4uiv (GLuint program, GLint location, GLsizei count, const GLuint *value); | ^ /usr/include/GL/glew.h:23199:45: note: previous declaration ‘void (* __glewProgramUniform4uiv)(GLuint, GLint, GLsizei, const GLuint*)’ 23199 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM4UIVPROC __glewProgramUniform4uiv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1492:117: error: ‘void __glewProgramUniform1fv(GLuint, GLint, GLsizei, const GLfloat*)’ redeclared as different kind of entity 1492 | GL_APICALL void GL_APIENTRY glProgramUniform1fv (GLuint program, GLint location, GLsizei count, const GLfloat *value); | ^ /usr/include/GL/glew.h:23171:44: note: previous declaration ‘void (* __glewProgramUniform1fv)(GLuint, GLint, GLsizei, const GLfloat*)’ 23171 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM1FVPROC __glewProgramUniform1fv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1493:117: error: ‘void __glewProgramUniform2fv(GLuint, GLint, GLsizei, const GLfloat*)’ redeclared as different kind of entity 1493 | GL_APICALL void GL_APIENTRY glProgramUniform2fv (GLuint program, GLint location, GLsizei count, const GLfloat *value); | ^ /usr/include/GL/glew.h:23179:44: note: previous declaration ‘void (* __glewProgramUniform2fv)(GLuint, GLint, GLsizei, const GLfloat*)’ 23179 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM2FVPROC __glewProgramUniform2fv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1494:117: error: ‘void __glewProgramUniform3fv(GLuint, GLint, GLsizei, const GLfloat*)’ redeclared as different kind of entity 1494 | GL_APICALL void GL_APIENTRY glProgramUniform3fv (GLuint program, GLint location, GLsizei count, const GLfloat *value); | ^ /usr/include/GL/glew.h:23187:44: note: previous declaration ‘void (* __glewProgramUniform3fv)(GLuint, GLint, GLsizei, const GLfloat*)’ 23187 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM3FVPROC __glewProgramUniform3fv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1495:117: error: ‘void __glewProgramUniform4fv(GLuint, GLint, GLsizei, const GLfloat*)’ redeclared as different kind of entity 1495 | GL_APICALL void GL_APIENTRY glProgramUniform4fv (GLuint program, GLint location, GLsizei count, const GLfloat *value); | ^ /usr/include/GL/glew.h:23195:44: note: previous declaration ‘void (* __glewProgramUniform4fv)(GLuint, GLint, GLsizei, const GLfloat*)’ 23195 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORM4FVPROC __glewProgramUniform4fv; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1496:144: error: ‘void __glewProgramUniformMatrix2fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1496 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix2fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23201:50: note: previous declaration ‘void (* __glewProgramUniformMatrix2fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23201 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX2FVPROC __glewProgramUniformMatrix2fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1497:144: error: ‘void __glewProgramUniformMatrix3fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1497 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix3fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23207:50: note: previous declaration ‘void (* __glewProgramUniformMatrix3fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23207 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX3FVPROC __glewProgramUniformMatrix3fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1498:144: error: ‘void __glewProgramUniformMatrix4fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1498 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix4fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23213:50: note: previous declaration ‘void (* __glewProgramUniformMatrix4fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23213 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX4FVPROC __glewProgramUniformMatrix4fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1499:146: error: ‘void __glewProgramUniformMatrix2x3fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1499 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix2x3fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23203:52: note: previous declaration ‘void (* __glewProgramUniformMatrix2x3fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23203 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX2X3FVPROC __glewProgramUniformMatrix2x3fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1500:146: error: ‘void __glewProgramUniformMatrix3x2fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1500 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix3x2fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23209:52: note: previous declaration ‘void (* __glewProgramUniformMatrix3x2fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23209 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX3X2FVPROC __glewProgramUniformMatrix3x2fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1501:146: error: ‘void __glewProgramUniformMatrix2x4fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1501 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix2x4fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23205:52: note: previous declaration ‘void (* __glewProgramUniformMatrix2x4fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23205 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX2X4FVPROC __glewProgramUniformMatrix2x4fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1502:146: error: ‘void __glewProgramUniformMatrix4x2fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1502 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix4x2fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23215:52: note: previous declaration ‘void (* __glewProgramUniformMatrix4x2fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23215 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX4X2FVPROC __glewProgramUniformMatrix4x2fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1503:146: error: ‘void __glewProgramUniformMatrix3x4fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1503 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix3x4fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23211:52: note: previous declaration ‘void (* __glewProgramUniformMatrix3x4fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23211 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX3X4FVPROC __glewProgramUniformMatrix3x4fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1504:146: error: ‘void __glewProgramUniformMatrix4x3fv(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ redeclared as different kind of entity 1504 | GL_APICALL void GL_APIENTRY glProgramUniformMatrix4x3fv (GLuint program, GLint location, GLsizei count, GLboolean transpose, const GLfloat *value); | ^ /usr/include/GL/glew.h:23217:52: note: previous declaration ‘void (* __glewProgramUniformMatrix4x3fv)(GLuint, GLint, GLsizei, GLboolean, const GLfloat*)’ 23217 | GLEW_FUN_EXPORT PFNGLPROGRAMUNIFORMMATRIX4X3FVPROC __glewProgramUniformMatrix4x3fv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1505:71: error: ‘void __glewValidateProgramPipeline(GLuint)’ redeclared as different kind of entity 1505 | GL_APICALL void GL_APIENTRY glValidateProgramPipeline (GLuint pipeline); | ^ /usr/include/GL/glew.h:23219:50: note: previous declaration ‘void (* __glewValidateProgramPipeline)(GLuint)’ 23219 | GLEW_FUN_EXPORT PFNGLVALIDATEPROGRAMPIPELINEPROC __glewValidateProgramPipeline; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1506:124: error: ‘void __glewGetProgramPipelineInfoLog(GLuint, GLsizei, GLsizei*, GLchar*)’ redeclared as different kind of entity 1506 | GL_APICALL void GL_APIENTRY glGetProgramPipelineInfoLog (GLuint pipeline, GLsizei bufSize, GLsizei *length, GLchar *infoLog); | ^ /usr/include/GL/glew.h:23165:52: note: previous declaration ‘void (* __glewGetProgramPipelineInfoLog)(GLuint, GLsizei, GLsizei*, GLchar*)’ 23165 | GLEW_FUN_EXPORT PFNGLGETPROGRAMPIPELINEINFOLOGPROC __glewGetProgramPipelineInfoLog; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1507:151: error: ‘void __glewBindImageTexture(GLuint, GLuint, GLint, GLboolean, GLint, GLenum, GLenum)’ redeclared as different kind of entity 1507 | GL_APICALL void GL_APIENTRY glBindImageTexture (GLuint unit, GLuint texture, GLint level, GLboolean layered, GLint layer, GLenum access, GLenum format); | ^ /usr/include/GL/glew.h:23223:43: note: previous declaration ‘void (* __glewBindImageTexture)(GLuint, GLuint, GLint, GLboolean, GLint, GLenum, GLenum)’ 23223 | GLEW_FUN_EXPORT PFNGLBINDIMAGETEXTUREPROC __glewBindImageTexture; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1508:90: error: ‘void __glewGetBooleani_v(GLenum, GLuint, GLboolean*)’ redeclared as different kind of entity 1508 | GL_APICALL void GL_APIENTRY glGetBooleani_v (GLenum target, GLuint index, GLboolean *data); | ^ /usr/include/GL/glew.h:22515:40: note: previous declaration ‘void (* __glewGetBooleani_v)(GLenum, GLuint, GLboolean*)’ 22515 | GLEW_FUN_EXPORT PFNGLGETBOOLEANI_VPROC __glewGetBooleani_v; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1509:65: error: ‘void __glewMemoryBarrier(GLbitfield)’ redeclared as different kind of entity 1509 | GL_APICALL void GL_APIENTRY glMemoryBarrier (GLbitfield barriers); | ^ /usr/include/GL/glew.h:23224:40: note: previous declaration ‘void (* __glewMemoryBarrier)(GLbitfield)’ 23224 | GLEW_FUN_EXPORT PFNGLMEMORYBARRIERPROC __glewMemoryBarrier; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1510:73: error: ‘void __glewMemoryBarrierByRegion(GLbitfield)’ redeclared as different kind of entity 1510 | GL_APICALL void GL_APIENTRY glMemoryBarrierByRegion (GLbitfield barriers); | ^ /usr/include/GL/glew.h:22720:48: note: previous declaration ‘void (* __glewMemoryBarrierByRegion)(GLbitfield)’ 22720 | GLEW_FUN_EXPORT PFNGLMEMORYBARRIERBYREGIONPROC __glewMemoryBarrierByRegion; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1511:172: error: ‘void __glewTexStorage2DMultisample(GLenum, GLsizei, GLenum, GLsizei, GLsizei, GLboolean)’ redeclared as different kind of entity 1511 | GL_APICALL void GL_APIENTRY glTexStorage2DMultisample (GLenum target, GLsizei samples, GLenum internalformat, GLsizei width, GLsizei height, GLboolean fixedsamplelocations); | ^ /usr/include/GL/glew.h:23323:50: note: previous declaration ‘void (* __glewTexStorage2DMultisample)(GLenum, GLsizei, GLenum, GLsizei, GLsizei, GLboolean)’ 23323 | GLEW_FUN_EXPORT PFNGLTEXSTORAGE2DMULTISAMPLEPROC __glewTexStorage2DMultisample; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1512:89: error: ‘void __glewGetMultisamplefv(GLenum, GLuint, GLfloat*)’ redeclared as different kind of entity 1512 | GL_APICALL void GL_APIENTRY glGetMultisamplefv (GLenum pname, GLuint index, GLfloat *val); | ^ /usr/include/GL/glew.h:23314:43: note: previous declaration ‘void (* __glewGetMultisamplefv)(GLenum, GLuint, GLfloat*)’ 23314 | GLEW_FUN_EXPORT PFNGLGETMULTISAMPLEFVPROC __glewGetMultisamplefv; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1513:78: error: ‘void __glewSampleMaski(GLuint, GLbitfield)’ redeclared as different kind of entity 1513 | GL_APICALL void GL_APIENTRY glSampleMaski (GLuint maskNumber, GLbitfield mask); | ^ /usr/include/GL/glew.h:23315:38: note: previous declaration ‘void (* __glewSampleMaski)(GLuint, GLbitfield)’ 23315 | GLEW_FUN_EXPORT PFNGLSAMPLEMASKIPROC __glewSampleMaski; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1516:116: error: ‘void __glewBindVertexBuffer(GLuint, GLuint, GLintptr, GLsizei)’ redeclared as different kind of entity 1516 | GL_APICALL void GL_APIENTRY glBindVertexBuffer (GLuint bindingindex, GLuint buffer, GLintptr offset, GLsizei stride); | ^ /usr/include/GL/glew.h:23382:43: note: previous declaration ‘void (* __glewBindVertexBuffer)(GLuint, GLuint, GLintptr, GLsizei)’ 23382 | GLEW_FUN_EXPORT PFNGLBINDVERTEXBUFFERPROC __glewBindVertexBuffer; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1517:139: error: ‘void __glewVertexAttribFormat(GLuint, GLint, GLenum, GLboolean, GLuint)’ redeclared as different kind of entity 1517 | GL_APICALL void GL_APIENTRY glVertexAttribFormat (GLuint attribindex, GLint size, GLenum type, GLboolean normalized, GLuint relativeoffset); | ^ /usr/include/GL/glew.h:23390:45: note: previous declaration ‘void (* __glewVertexAttribFormat)(GLuint, GLint, GLenum, GLboolean, GLuint)’ 23390 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBFORMATPROC __glewVertexAttribFormat; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1518:118: error: ‘void __glewVertexAttribIFormat(GLuint, GLint, GLenum, GLuint)’ redeclared as different kind of entity 1518 | GL_APICALL void GL_APIENTRY glVertexAttribIFormat (GLuint attribindex, GLint size, GLenum type, GLuint relativeoffset); | ^ /usr/include/GL/glew.h:23391:46: note: previous declaration ‘void (* __glewVertexAttribIFormat)(GLuint, GLint, GLenum, GLuint)’ 23391 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBIFORMATPROC __glewVertexAttribIFormat; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1519:91: error: ‘void __glewVertexAttribBinding(GLuint, GLuint)’ redeclared as different kind of entity 1519 | GL_APICALL void GL_APIENTRY glVertexAttribBinding (GLuint attribindex, GLuint bindingindex); | ^ /usr/include/GL/glew.h:23389:46: note: previous declaration ‘void (* __glewVertexAttribBinding)(GLuint, GLuint)’ 23389 | GLEW_FUN_EXPORT PFNGLVERTEXATTRIBBINDINGPROC __glewVertexAttribBinding; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1520:88: error: ‘void __glewVertexBindingDivisor(GLuint, GLuint)’ redeclared as different kind of entity 1520 | GL_APICALL void GL_APIENTRY glVertexBindingDivisor (GLuint bindingindex, GLuint divisor); | ^ /usr/include/GL/glew.h:23393:47: note: previous declaration ‘void (* __glewVertexBindingDivisor)(GLuint, GLuint)’ 23393 | GLEW_FUN_EXPORT PFNGLVERTEXBINDINGDIVISORPROC __glewVertexBindingDivisor; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1743:28: error: conflicting declaration ‘typedef void (* PFNGLOBJECTPTRLABELPROC)(const void*, GLsizei, const GLchar*)’ 1743 | typedef void (GL_APIENTRYP PFNGLOBJECTPTRLABELPROC) (const void *ptr, GLsizei length, const GLchar *label); | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GL/glew.h:14422:28: note: previous declaration as ‘typedef void (* PFNGLOBJECTPTRLABELPROC)(void*, GLsizei, const GLchar*)’ 14422 | typedef void (GLAPIENTRY * PFNGLOBJECTPTRLABELPROC) (void* ptr, GLsizei length, const GLchar* label); | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1744:28: error: conflicting declaration ‘typedef void (* PFNGLGETOBJECTPTRLABELPROC)(const void*, GLsizei, GLsizei*, GLchar*)’ 1744 | typedef void (GL_APIENTRYP PFNGLGETOBJECTPTRLABELPROC) (const void *ptr, GLsizei bufSize, GLsizei *length, GLchar *label); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GL/glew.h:14420:28: note: previous declaration as ‘typedef void (* PFNGLGETOBJECTPTRLABELPROC)(void*, GLsizei, GLsizei*, GLchar*)’ 14420 | typedef void (GLAPIENTRY * PFNGLGETOBJECTPTRLABELPROC) (void* ptr, GLsizei bufSize, GLsizei* length, GLchar *label); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1779:274: error: ‘void __glewCopyImageSubData(GLuint, GLenum, GLint, GLint, GLint, GLint, GLuint, GLenum, GLint, GLint, GLint, GLint, GLsizei, GLsizei, GLsizei)’ redeclared as different kind of entity 1779 | GL_APICALL void GL_APIENTRY glCopyImageSubData (GLuint srcName, GLenum srcTarget, GLint srcLevel, GLint srcX, GLint srcY, GLint srcZ, GLuint dstName, GLenum dstTarget, GLint dstLevel, GLint dstX, GLint dstY, GLint dstZ, GLsizei srcWidth, GLsizei srcHeight, GLsizei srcDepth); | ^ /usr/include/GL/glew.h:22771:43: note: previous declaration ‘void (* __glewCopyImageSubData)(GLuint, GLenum, GLint, GLint, GLint, GLint, GLuint, GLenum, GLint, GLint, GLint, GLint, GLsizei, GLsizei, GLsizei)’ 22771 | GLEW_FUN_EXPORT PFNGLCOPYIMAGESUBDATAPROC __glewCopyImageSubData; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1780:148: error: ‘void __glewDebugMessageControl(GLenum, GLenum, GLenum, GLsizei, const GLuint*, GLboolean)’ redeclared as different kind of entity 1780 | GL_APICALL void GL_APIENTRY glDebugMessageControl (GLenum source, GLenum type, GLenum severity, GLsizei count, const GLuint *ids, GLboolean enabled); | ^ /usr/include/GL/glew.h:24417:46: note: previous declaration ‘void (* __glewDebugMessageControl)(GLenum, GLenum, GLenum, GLsizei, const GLuint*, GLboolean)’ 24417 | GLEW_FUN_EXPORT PFNGLDEBUGMESSAGECONTROLPROC __glewDebugMessageControl; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1781:140: error: ‘void __glewDebugMessageInsert(GLenum, GLenum, GLuint, GLenum, GLsizei, const GLchar*)’ redeclared as different kind of entity 1781 | GL_APICALL void GL_APIENTRY glDebugMessageInsert (GLenum source, GLenum type, GLuint id, GLenum severity, GLsizei length, const GLchar *buf); | ^ /usr/include/GL/glew.h:24418:45: note: previous declaration ‘void (* __glewDebugMessageInsert)(GLenum, GLenum, GLuint, GLenum, GLsizei, const GLchar*)’ 24418 | GLEW_FUN_EXPORT PFNGLDEBUGMESSAGEINSERTPROC __glewDebugMessageInsert; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1782:96: error: ‘void __glewDebugMessageCallback(GLDEBUGPROC, const void*)’ redeclared as different kind of entity 1782 | GL_APICALL void GL_APIENTRY glDebugMessageCallback (GLDEBUGPROC callback, const void *userParam); | ^ /usr/include/GL/glew.h:24416:47: note: previous declaration ‘void (* __glewDebugMessageCallback)(GLDEBUGPROC, const void*)’ 24416 | GLEW_FUN_EXPORT PFNGLDEBUGMESSAGECALLBACKPROC __glewDebugMessageCallback; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1783:185: error: ‘GLuint __glewGetDebugMessageLog(GLuint, GLsizei, GLenum*, GLenum*, GLuint*, GLenum*, GLsizei*, GLchar*)’ redeclared as different kind of entity 1783 | GL_APICALL GLuint GL_APIENTRY glGetDebugMessageLog (GLuint count, GLsizei bufSize, GLenum *sources, GLenum *types, GLuint *ids, GLenum *severities, GLsizei *lengths, GLchar *messageLog); | ^ /usr/include/GL/glew.h:24419:45: note: previous declaration ‘GLuint (* __glewGetDebugMessageLog)(GLuint, GLsizei, GLenum*, GLenum*, GLuint*, GLenum*, GLsizei*, GLchar*)’ 24419 | GLEW_FUN_EXPORT PFNGLGETDEBUGMESSAGELOGPROC __glewGetDebugMessageLog; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1784:110: error: ‘void __glewPushDebugGroup(GLenum, GLuint, GLsizei, const GLchar*)’ redeclared as different kind of entity 1784 | GL_APICALL void GL_APIENTRY glPushDebugGroup (GLenum source, GLuint id, GLsizei length, const GLchar *message); | ^ /usr/include/GL/glew.h:24425:41: note: previous declaration ‘void (* __glewPushDebugGroup)(GLenum, GLuint, GLsizei, const GLchar*)’ 24425 | GLEW_FUN_EXPORT PFNGLPUSHDEBUGGROUPPROC __glewPushDebugGroup; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1785:50: error: ‘void __glewPopDebugGroup()’ redeclared as different kind of entity 1785 | GL_APICALL void GL_APIENTRY glPopDebugGroup (void); | ^ /usr/include/GL/glew.h:24424:40: note: previous declaration ‘void (* __glewPopDebugGroup)()’ 24424 | GLEW_FUN_EXPORT PFNGLPOPDEBUGGROUPPROC __glewPopDebugGroup; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1786:111: error: ‘void __glewObjectLabel(GLenum, GLuint, GLsizei, const GLchar*)’ redeclared as different kind of entity 1786 | GL_APICALL void GL_APIENTRY glObjectLabel (GLenum identifier, GLuint name, GLsizei length, const GLchar *label); | ^ /usr/include/GL/glew.h:24422:38: note: previous declaration ‘void (* __glewObjectLabel)(GLenum, GLuint, GLsizei, const GLchar*)’ 24422 | GLEW_FUN_EXPORT PFNGLOBJECTLABELPROC __glewObjectLabel; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1787:126: error: ‘void __glewGetObjectLabel(GLenum, GLuint, GLsizei, GLsizei*, GLchar*)’ redeclared as different kind of entity 1787 | GL_APICALL void GL_APIENTRY glGetObjectLabel (GLenum identifier, GLuint name, GLsizei bufSize, GLsizei *length, GLchar *label); | ^ /usr/include/GL/glew.h:24420:41: note: previous declaration ‘void (* __glewGetObjectLabel)(GLenum, GLuint, GLsizei, GLsizei*, GLchar*)’ 24420 | GLEW_FUN_EXPORT PFNGLGETOBJECTLABELPROC __glewGetObjectLabel; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1788:99: error: ‘void __glewObjectPtrLabel(const void*, GLsizei, const GLchar*)’ redeclared as different kind of entity 1788 | GL_APICALL void GL_APIENTRY glObjectPtrLabel (const void *ptr, GLsizei length, const GLchar *label); | ^ /usr/include/GL/glew.h:24423:41: note: previous declaration ‘void (* __glewObjectPtrLabel)(void*, GLsizei, const GLchar*)’ 24423 | GLEW_FUN_EXPORT PFNGLOBJECTPTRLABELPROC __glewObjectPtrLabel; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1789:114: error: ‘void __glewGetObjectPtrLabel(const void*, GLsizei, GLsizei*, GLchar*)’ redeclared as different kind of entity 1789 | GL_APICALL void GL_APIENTRY glGetObjectPtrLabel (const void *ptr, GLsizei bufSize, GLsizei *length, GLchar *label); | ^ /usr/include/GL/glew.h:24421:44: note: previous declaration ‘void (* __glewGetObjectPtrLabel)(void*, GLsizei, GLsizei*, GLchar*)’ 24421 | GLEW_FUN_EXPORT PFNGLGETOBJECTPTRLABELPROC __glewGetObjectPtrLabel; | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1791:67: error: ‘void __glewEnablei(GLenum, GLuint)’ redeclared as different kind of entity 1791 | GL_APICALL void GL_APIENTRY glEnablei (GLenum target, GLuint index); | ^ /usr/include/GL/glew.h:22512:34: note: previous declaration ‘void (* __glewEnablei)(GLenum, GLuint)’ 22512 | GLEW_FUN_EXPORT PFNGLENABLEIPROC __glewEnablei; | ^~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1792:68: error: ‘void __glewDisablei(GLenum, GLuint)’ redeclared as different kind of entity 1792 | GL_APICALL void GL_APIENTRY glDisablei (GLenum target, GLuint index); | ^ /usr/include/GL/glew.h:22511:35: note: previous declaration ‘void (* __glewDisablei)(GLenum, GLuint)’ 22511 | GLEW_FUN_EXPORT PFNGLDISABLEIPROC __glewDisablei; | ^~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1793:70: error: ‘void __glewBlendEquationi(GLuint, GLenum)’ redeclared as different kind of entity 1793 | GL_APICALL void GL_APIENTRY glBlendEquationi (GLuint buf, GLenum mode); | ^ /usr/include/GL/glew.h:22570:41: note: previous declaration ‘void (* __glewBlendEquationi)(GLuint, GLenum)’ 22570 | GLEW_FUN_EXPORT PFNGLBLENDEQUATIONIPROC __glewBlendEquationi; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1794:99: error: ‘void __glewBlendEquationSeparatei(GLuint, GLenum, GLenum)’ redeclared as different kind of entity 1794 | GL_APICALL void GL_APIENTRY glBlendEquationSeparatei (GLuint buf, GLenum modeRGB, GLenum modeAlpha); | ^ /usr/include/GL/glew.h:22569:49: note: previous declaration ‘void (* __glewBlendEquationSeparatei)(GLuint, GLenum, GLenum)’ 22569 | GLEW_FUN_EXPORT PFNGLBLENDEQUATIONSEPARATEIPROC __glewBlendEquationSeparatei; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1795:77: error: ‘void __glewBlendFunci(GLuint, GLenum, GLenum)’ redeclared as different kind of entity 1795 | GL_APICALL void GL_APIENTRY glBlendFunci (GLuint buf, GLenum src, GLenum dst); | ^ /usr/include/GL/glew.h:22572:37: note: previous declaration ‘void (* __glewBlendFunci)(GLuint, GLenum, GLenum)’ 22572 | GLEW_FUN_EXPORT PFNGLBLENDFUNCIPROC __glewBlendFunci; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1796:125: error: ‘void __glewBlendFuncSeparatei(GLuint, GLenum, GLenum, GLenum, GLenum)’ redeclared as different kind of entity 1796 | GL_APICALL void GL_APIENTRY glBlendFuncSeparatei (GLuint buf, GLenum srcRGB, GLenum dstRGB, GLenum srcAlpha, GLenum dstAlpha); | ^ /usr/include/GL/glew.h:22571:45: note: previous declaration ‘void (* __glewBlendFuncSeparatei)(GLuint, GLenum, GLenum, GLenum, GLenum)’ 22571 | GLEW_FUN_EXPORT PFNGLBLENDFUNCSEPARATEIPROC __glewBlendFuncSeparatei; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1797:107: error: ‘void __glewColorMaski(GLuint, GLboolean, GLboolean, GLboolean, GLboolean)’ redeclared as different kind of entity 1797 | GL_APICALL void GL_APIENTRY glColorMaski (GLuint index, GLboolean r, GLboolean g, GLboolean b, GLboolean a); | ^ /usr/include/GL/glew.h:22510:37: note: previous declaration ‘void (* __glewColorMaski)(GLuint, GLboolean, GLboolean, GLboolean, GLboolean)’ 22510 | GLEW_FUN_EXPORT PFNGLCOLORMASKIPROC __glewColorMaski; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1798:75: error: ‘GLboolean __glewIsEnabledi(GLenum, GLuint)’ redeclared as different kind of entity 1798 | GL_APICALL GLboolean GL_APIENTRY glIsEnabledi (GLenum target, GLuint index); | ^ /usr/include/GL/glew.h:22524:37: note: previous declaration ‘GLboolean (* __glewIsEnabledi)(GLenum, GLuint)’ 22524 | GLEW_FUN_EXPORT PFNGLISENABLEDIPROC __glewIsEnabledi; | ^~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1799:133: error: ‘void __glewDrawElementsBaseVertex(GLenum, GLsizei, GLenum, const void*, GLint)’ redeclared as different kind of entity 1799 | GL_APICALL void GL_APIENTRY glDrawElementsBaseVertex (GLenum mode, GLsizei count, GLenum type, const void *indices, GLint basevertex); | ^ /usr/include/GL/glew.h:22883:49: note: previous declaration ‘void (* __glewDrawElementsBaseVertex)(GLenum, GLsizei, GLenum, const void*, GLint)’ 22883 | GLEW_FUN_EXPORT PFNGLDRAWELEMENTSBASEVERTEXPROC __glewDrawElementsBaseVertex; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1800:164: error: ‘void __glewDrawRangeElementsBaseVertex(GLenum, GLuint, GLuint, GLsizei, GLenum, const void*, GLint)’ redeclared as different kind of entity 1800 | GL_APICALL void GL_APIENTRY glDrawRangeElementsBaseVertex (GLenum mode, GLuint start, GLuint end, GLsizei count, GLenum type, const void *indices, GLint basevertex); | ^ /usr/include/GL/glew.h:22885:54: note: previous declaration ‘void (* __glewDrawRangeElementsBaseVertex)(GLenum, GLuint, GLuint, GLsizei, GLenum, const void*, GLint)’ 22885 | GLEW_FUN_EXPORT PFNGLDRAWRANGEELEMENTSBASEVERTEXPROC __glewDrawRangeElementsBaseVertex; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1801:165: error: ‘void __glewDrawElementsInstancedBaseVertex(GLenum, GLsizei, GLenum, const void*, GLsizei, GLint)’ redeclared as different kind of entity 1801 | GL_APICALL void GL_APIENTRY glDrawElementsInstancedBaseVertex (GLenum mode, GLsizei count, GLenum type, const void *indices, GLsizei instancecount, GLint basevertex); | ^ /usr/include/GL/glew.h:22884:58: note: previous declaration ‘void (* __glewDrawElementsInstancedBaseVertex)(GLenum, GLsizei, GLenum, const void*, GLsizei, GLint)’ 22884 | GLEW_FUN_EXPORT PFNGLDRAWELEMENTSINSTANCEDBASEVERTEXPROC __glewDrawElementsInstancedBaseVertex; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1802:112: error: ‘void __glewFramebufferTexture(GLenum, GLenum, GLuint, GLint)’ redeclared as different kind of entity 1802 | GL_APICALL void GL_APIENTRY glFramebufferTexture (GLenum target, GLenum attachment, GLuint texture, GLint level); | ^ /usr/include/GL/glew.h:22563:45: note: previous declaration ‘void (* __glewFramebufferTexture)(GLenum, GLenum, GLuint, GLint)’ 22563 | GLEW_FUN_EXPORT PFNGLFRAMEBUFFERTEXTUREPROC __glewFramebufferTexture; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1804:61: error: ‘GLenum __glewGetGraphicsResetStatus()’ redeclared as different kind of entity 1804 | GL_APICALL GLenum GL_APIENTRY glGetGraphicsResetStatus (void); | ^ /usr/include/GL/glew.h:22575:49: note: previous declaration ‘GLenum (* __glewGetGraphicsResetStatus)()’ 22575 | GLEW_FUN_EXPORT PFNGLGETGRAPHICSRESETSTATUSPROC __glewGetGraphicsResetStatus; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1805:148: error: ‘void __glewReadnPixels(GLint, GLint, GLsizei, GLsizei, GLenum, GLenum, GLsizei, void*)’ redeclared as different kind of entity 1805 | GL_APICALL void GL_APIENTRY glReadnPixels (GLint x, GLint y, GLsizei width, GLsizei height, GLenum format, GLenum type, GLsizei bufSize, void *data); | ^ /usr/include/GL/glew.h:24432:38: note: previous declaration ‘void (* __glewReadnPixels)(GLint, GLint, GLsizei, GLsizei, GLenum, GLenum, GLsizei, void*)’ 24432 | GLEW_FUN_EXPORT PFNGLREADNPIXELSPROC __glewReadnPixels; | ^~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1806:110: error: ‘void __glewGetnUniformfv(GLuint, GLint, GLsizei, GLfloat*)’ redeclared as different kind of entity 1806 | GL_APICALL void GL_APIENTRY glGetnUniformfv (GLuint program, GLint location, GLsizei bufSize, GLfloat *params); | ^ /usr/include/GL/glew.h:24429:40: note: previous declaration ‘void (* __glewGetnUniformfv)(GLuint, GLint, GLsizei, GLfloat*)’ 24429 | GLEW_FUN_EXPORT PFNGLGETNUNIFORMFVPROC __glewGetnUniformfv; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1807:108: error: ‘void __glewGetnUniformiv(GLuint, GLint, GLsizei, GLint*)’ redeclared as different kind of entity 1807 | GL_APICALL void GL_APIENTRY glGetnUniformiv (GLuint program, GLint location, GLsizei bufSize, GLint *params); | ^ /usr/include/GL/glew.h:24430:40: note: previous declaration ‘void (* __glewGetnUniformiv)(GLuint, GLint, GLsizei, GLint*)’ 24430 | GLEW_FUN_EXPORT PFNGLGETNUNIFORMIVPROC __glewGetnUniformiv; | ^~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1808:110: error: ‘void __glewGetnUniformuiv(GLuint, GLint, GLsizei, GLuint*)’ redeclared as different kind of entity 1808 | GL_APICALL void GL_APIENTRY glGetnUniformuiv (GLuint program, GLint location, GLsizei bufSize, GLuint *params); | ^ /usr/include/GL/glew.h:24431:41: note: previous declaration ‘void (* __glewGetnUniformuiv)(GLuint, GLint, GLsizei, GLuint*)’ 24431 | GLEW_FUN_EXPORT PFNGLGETNUNIFORMUIVPROC __glewGetnUniformuiv; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1809:62: error: ‘void __glewMinSampleShading(GLfloat)’ redeclared as different kind of entity 1809 | GL_APICALL void GL_APIENTRY glMinSampleShading (GLfloat value); | ^ /usr/include/GL/glew.h:22573:43: note: previous declaration ‘void (* __glewMinSampleShading)(GLclampf)’ 22573 | GLEW_FUN_EXPORT PFNGLMINSAMPLESHADINGPROC __glewMinSampleShading; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1810:73: error: ‘void __glewPatchParameteri(GLenum, GLint)’ redeclared as different kind of entity 1810 | GL_APICALL void GL_APIENTRY glPatchParameteri (GLenum pname, GLint value); | ^ /usr/include/GL/glew.h:23297:42: note: previous declaration ‘void (* __glewPatchParameteri)(GLenum, GLint)’ 23297 | GLEW_FUN_EXPORT PFNGLPATCHPARAMETERIPROC __glewPatchParameteri; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1811:96: error: ‘void __glewTexParameterIiv(GLenum, GLenum, const GLint*)’ redeclared as different kind of entity 1811 | GL_APICALL void GL_APIENTRY glTexParameterIiv (GLenum target, GLenum pname, const GLint *params); | ^ /usr/include/GL/glew.h:22525:42: note: previous declaration ‘void (* __glewTexParameterIiv)(GLenum, GLenum, const GLint*)’ 22525 | GLEW_FUN_EXPORT PFNGLTEXPARAMETERIIVPROC __glewTexParameterIiv; | ^~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1812:98: error: ‘void __glewTexParameterIuiv(GLenum, GLenum, const GLuint*)’ redeclared as different kind of entity 1812 | GL_APICALL void GL_APIENTRY glTexParameterIuiv (GLenum target, GLenum pname, const GLuint *params); | ^ /usr/include/GL/glew.h:22526:43: note: previous declaration ‘void (* __glewTexParameterIuiv)(GLenum, GLenum, const GLuint*)’ 22526 | GLEW_FUN_EXPORT PFNGLTEXPARAMETERIUIVPROC __glewTexParameterIuiv; | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1813:93: error: ‘void __glewGetTexParameterIiv(GLenum, GLenum, GLint*)’ redeclared as different kind of entity 1813 | GL_APICALL void GL_APIENTRY glGetTexParameterIiv (GLenum target, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:22518:45: note: previous declaration ‘void (* __glewGetTexParameterIiv)(GLenum, GLenum, GLint*)’ 22518 | GLEW_FUN_EXPORT PFNGLGETTEXPARAMETERIIVPROC __glewGetTexParameterIiv; | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1814:95: error: ‘void __glewGetTexParameterIuiv(GLenum, GLenum, GLuint*)’ redeclared as different kind of entity 1814 | GL_APICALL void GL_APIENTRY glGetTexParameterIuiv (GLenum target, GLenum pname, GLuint *params); | ^ /usr/include/GL/glew.h:22519:46: note: previous declaration ‘void (* __glewGetTexParameterIuiv)(GLenum, GLenum, GLuint*)’ 22519 | GLEW_FUN_EXPORT PFNGLGETTEXPARAMETERIUIVPROC __glewGetTexParameterIuiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1815:100: error: ‘void __glewSamplerParameterIiv(GLuint, GLenum, const GLint*)’ redeclared as different kind of entity 1815 | GL_APICALL void GL_APIENTRY glSamplerParameterIiv (GLuint sampler, GLenum pname, const GLint *param); | ^ /usr/include/GL/glew.h:23153:46: note: previous declaration ‘void (* __glewSamplerParameterIiv)(GLuint, GLenum, const GLint*)’ 23153 | GLEW_FUN_EXPORT PFNGLSAMPLERPARAMETERIIVPROC __glewSamplerParameterIiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1816:102: error: ‘void __glewSamplerParameterIuiv(GLuint, GLenum, const GLuint*)’ redeclared as different kind of entity 1816 | GL_APICALL void GL_APIENTRY glSamplerParameterIuiv (GLuint sampler, GLenum pname, const GLuint *param); | ^ /usr/include/GL/glew.h:23154:47: note: previous declaration ‘void (* __glewSamplerParameterIuiv)(GLuint, GLenum, const GLuint*)’ 23154 | GLEW_FUN_EXPORT PFNGLSAMPLERPARAMETERIUIVPROC __glewSamplerParameterIuiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1817:98: error: ‘void __glewGetSamplerParameterIiv(GLuint, GLenum, GLint*)’ redeclared as different kind of entity 1817 | GL_APICALL void GL_APIENTRY glGetSamplerParameterIiv (GLuint sampler, GLenum pname, GLint *params); | ^ /usr/include/GL/glew.h:23148:49: note: previous declaration ‘void (* __glewGetSamplerParameterIiv)(GLuint, GLenum, GLint*)’ 23148 | GLEW_FUN_EXPORT PFNGLGETSAMPLERPARAMETERIIVPROC __glewGetSamplerParameterIiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1818:100: error: ‘void __glewGetSamplerParameterIuiv(GLuint, GLenum, GLuint*)’ redeclared as different kind of entity 1818 | GL_APICALL void GL_APIENTRY glGetSamplerParameterIuiv (GLuint sampler, GLenum pname, GLuint *params); | ^ /usr/include/GL/glew.h:23149:50: note: previous declaration ‘void (* __glewGetSamplerParameterIuiv)(GLuint, GLenum, GLuint*)’ 23149 | GLEW_FUN_EXPORT PFNGLGETSAMPLERPARAMETERIUIVPROC __glewGetSamplerParameterIuiv; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1819:93: error: ‘void __glewTexBuffer(GLenum, GLenum, GLuint)’ redeclared as different kind of entity 1819 | GL_APICALL void GL_APIENTRY glTexBuffer (GLenum target, GLenum internalformat, GLuint buffer); | ^ /usr/include/GL/glew.h:22561:36: note: previous declaration ‘void (* __glewTexBuffer)(GLenum, GLenum, GLuint)’ 22561 | GLEW_FUN_EXPORT PFNGLTEXBUFFERPROC __glewTexBuffer; | ^~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1820:132: error: ‘void __glewTexBufferRange(GLenum, GLenum, GLuint, GLintptr, GLsizeiptr)’ redeclared as different kind of entity 1820 | GL_APICALL void GL_APIENTRY glTexBufferRange (GLenum target, GLenum internalformat, GLuint buffer, GLintptr offset, GLsizeiptr size); | ^ /usr/include/GL/glew.h:23303:41: note: previous declaration ‘void (* __glewTexBufferRange)(GLenum, GLenum, GLuint, GLintptr, GLsizeiptr)’ 23303 | GLEW_FUN_EXPORT PFNGLTEXBUFFERRANGEPROC __glewTexBufferRange; | ^~~~~~~~~~~~~~~~~~~~ /usr/include/GLES3/gl32.h:1821:187: error: ‘void __glewTexStorage3DMultisample(GLenum, GLsizei, GLenum, GLsizei, GLsizei, GLsizei, GLboolean)’ redeclared as different kind of entity 1821 | GL_APICALL void GL_APIENTRY glTexStorage3DMultisample (GLenum target, GLsizei samples, GLenum internalformat, GLsizei width, GLsizei height, GLsizei depth, GLboolean fixedsamplelocations); | ^ /usr/include/GL/glew.h:23324:50: note: previous declaration ‘void (* __glewTexStorage3DMultisample)(GLenum, GLsizei, GLenum, GLsizei, GLsizei, GLsizei, GLboolean)’ 23324 | GLEW_FUN_EXPORT PFNGLTEXSTORAGE3DMULTISAMPLEPROC __glewTexStorage3DMultisample; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/VIEW/RENDERING/renderSetup.h:13: /<>/include/BALL/VIEW/RENDERING/renderTarget.h: In constructor ‘BALL::VIEW::FrameBufferFormat::FrameBufferFormat()’: /<>/include/BALL/VIEW/RENDERING/renderTarget.h:53:49: warning: implicitly-declared ‘constexpr BALL::VIEW::PixelFormat::PixelFormat(const BALL::VIEW::PixelFormat&)’ is deprecated [-Wdeprecated-copy] 53 | pixelFormat(PixelFormat::RGB_32) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/include/BALL/VIEW/RENDERING/renderTarget.h:16: /<>/include/BALL/VIEW/RENDERING/pixelFormat.h:162:38: note: because ‘BALL::VIEW::PixelFormat’ has user-provided ‘BALL::VIEW::PixelFormat& BALL::VIEW::PixelFormat::operator=(const BALL::VIEW::PixelFormat&)’ 162 | PixelFormat &operator=(const PixelFormat &f) | ^~~~~~~~ /<>/include/BALL/VIEW/RENDERING/renderTarget.h: In constructor ‘BALL::VIEW::FrameBufferFormat::FrameBufferFormat(BALL::Size, BALL::Size, const BALL::VIEW::PixelFormat&)’: /<>/include/BALL/VIEW/RENDERING/renderTarget.h:60:49: warning: implicitly-declared ‘constexpr BALL::VIEW::PixelFormat::PixelFormat(const BALL::VIEW::PixelFormat&)’ is deprecated [-Wdeprecated-copy] 60 | pixelFormat(pixelFormat) | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/VIEW/RENDERING/pixelFormat.h:162:38: note: because ‘BALL::VIEW::PixelFormat’ has user-provided ‘BALL::VIEW::PixelFormat& BALL::VIEW::PixelFormat::operator=(const BALL::VIEW::PixelFormat&)’ 162 | PixelFormat &operator=(const PixelFormat &f) | ^~~~~~~~ /<>/include/BALL/VIEW/RENDERING/renderTarget.h: In constructor ‘BALL::VIEW::FrameBufferFormat::FrameBufferFormat(BALL::Size, BALL::Size, BALL::Size, const BALL::VIEW::PixelFormat&)’: /<>/include/BALL/VIEW/RENDERING/renderTarget.h:69:49: warning: implicitly-declared ‘constexpr BALL::VIEW::PixelFormat::PixelFormat(const BALL::VIEW::PixelFormat&)’ is deprecated [-Wdeprecated-copy] 69 | pixelFormat(pixelFormat) | ^~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/VIEW/RENDERING/pixelFormat.h:162:38: note: because ‘BALL::VIEW::PixelFormat’ has user-provided ‘BALL::VIEW::PixelFormat& BALL::VIEW::PixelFormat::operator=(const BALL::VIEW::PixelFormat&)’ 162 | PixelFormat &operator=(const PixelFormat &f) | ^~~~~~~~ In file included from /<>/include/BALL/DATATYPE/string.h:15, from /<>/build/VIEW_autogen/2AM2ODBFSX/../../../include/BALL/VIEW/DATATYPE/dataset.h:9, from /<>/build/VIEW_autogen/2AM2ODBFSX/moc_dataset.cpp:10, from /<>/build/VIEW_autogen/mocs_compilation.cpp:2: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ParametersBase::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:43:17: note: in expansion of macro ‘BALL_CREATE’ 43 | BALL_CREATE(MMFF94ParametersBase) | ^~~~~~~~~~~ In file included from /<>/include/BALL/MOLMEC/MMFF94/MMFF94.h:25, from /<>/build/VIEW_autogen/WWXRSHT6NL/../../../include/BALL/VIEW/WIDGETS/molecularStructure.h:57, from /<>/build/VIEW_autogen/WWXRSHT6NL/moc_molecularStructure.cpp:10, from /<>/build/VIEW_autogen/mocs_compilation.cpp:76: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:226:48: note: because ‘BALL::MMFF94StretchParameters’ has user-provided ‘const BALL::MMFF94StretchParameters& BALL::MMFF94StretchParameters::operator=(const BALL::MMFF94StretchParameters&)’ 226 | const MMFF94StretchParameters& operator = (const MMFF94StretchParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:185:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 185 | class BALL_EXPORT MMFF94StretchParameters: | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchParameters::MMFF94StretchParameters(const BALL::MMFF94StretchParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:217:17: note: in expansion of macro ‘BALL_CREATE’ 217 | BALL_CREATE(MMFF94StretchParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:280:45: note: because ‘BALL::MMFF94BendParameters’ has user-provided ‘const BALL::MMFF94BendParameters& BALL::MMFF94BendParameters::operator=(const BALL::MMFF94BendParameters&)’ 280 | const MMFF94BendParameters& operator = (const MMFF94BendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:263:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 263 | class BALL_EXPORT MMFF94BendParameters | ^~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94BendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94BendParameters::MMFF94BendParameters(const BALL::MMFF94BendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:271:17: note: in expansion of macro ‘BALL_CREATE’ 271 | BALL_CREATE(MMFF94BendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:327:52: note: because ‘BALL::MMFF94StretchBendParameters’ has user-provided ‘const BALL::MMFF94StretchBendParameters& BALL::MMFF94StretchBendParameters::operator=(const BALL::MMFF94StretchBendParameters&)’ 327 | const MMFF94StretchBendParameters& operator = (const MMFF94StretchBendParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:310:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 310 | class BALL_EXPORT MMFF94StretchBendParameters | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94StretchBendParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94StretchBendParameters::MMFF94StretchBendParameters(const BALL::MMFF94StretchBendParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:318:17: note: in expansion of macro ‘BALL_CREATE’ 318 | BALL_CREATE(MMFF94StretchBendParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:383:48: note: because ‘BALL::MMFF94TorsionParameters’ has user-provided ‘const BALL::MMFF94TorsionParameters& BALL::MMFF94TorsionParameters::operator=(const BALL::MMFF94TorsionParameters&)’ 383 | const MMFF94TorsionParameters& operator = (const MMFF94TorsionParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:366:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 366 | class BALL_EXPORT MMFF94TorsionParameters | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94TorsionParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94TorsionParameters::MMFF94TorsionParameters(const BALL::MMFF94TorsionParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:374:17: note: in expansion of macro ‘BALL_CREATE’ 374 | BALL_CREATE(MMFF94TorsionParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:431:46: note: because ‘BALL::MMFF94PlaneParameters’ has user-provided ‘const BALL::MMFF94PlaneParameters& BALL::MMFF94PlaneParameters::operator=(const BALL::MMFF94PlaneParameters&)’ 431 | const MMFF94PlaneParameters& operator = (const MMFF94PlaneParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:414:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 414 | class BALL_EXPORT MMFF94PlaneParameters | ^~~~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94PlaneParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94PlaneParameters::MMFF94PlaneParameters(const BALL::MMFF94PlaneParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:422:17: note: in expansion of macro ‘BALL_CREATE’ 422 | BALL_CREATE(MMFF94PlaneParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:482:44: note: because ‘BALL::MMFF94VDWParameters’ has user-provided ‘const BALL::MMFF94VDWParameters& BALL::MMFF94VDWParameters::operator=(const BALL::MMFF94VDWParameters&)’ 482 | const MMFF94VDWParameters& operator = (const MMFF94VDWParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:458:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 458 | class BALL_EXPORT MMFF94VDWParameters | ^~~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94VDWParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94VDWParameters::MMFF94VDWParameters(const BALL::MMFF94VDWParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:473:17: note: in expansion of macro ‘BALL_CREATE’ 473 | BALL_CREATE(MMFF94VDWParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: warning: implicitly-declared ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ is deprecated [-Wdeprecated-copy] 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:539:43: note: because ‘BALL::MMFF94ESParameters’ has user-provided ‘const BALL::MMFF94ESParameters& BALL::MMFF94ESParameters::operator=(const BALL::MMFF94ESParameters&)’ 539 | const MMFF94ESParameters& operator = (const MMFF94ESParameters& param) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In copy constructor ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’: /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:525:27: warning: implicitly-declared ‘constexpr BALL::MMFF94ParametersBase::MMFF94ParametersBase(const BALL::MMFF94ParametersBase&)’ is deprecated [-Wdeprecated-copy] 525 | class BALL_EXPORT MMFF94ESParameters | ^~~~~~~~~~~~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:52:45: note: because ‘BALL::MMFF94ParametersBase’ has user-provided ‘const BALL::MMFF94ParametersBase& BALL::MMFF94ParametersBase::operator=(const BALL::MMFF94ParametersBase&)’ 52 | const MMFF94ParametersBase& operator = (const MMFF94ParametersBase&) | ^~~~~~~~ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h: In member function ‘virtual void* BALL::MMFF94ESParameters::create(bool, bool) const’: /<>/include/BALL/COMMON/create.h:73:52: note: synthesized method ‘BALL::MMFF94ESParameters::MMFF94ESParameters(const BALL::MMFF94ESParameters&)’ first required here 73 | ptr = (void*)new name(*this);\ | ^ /<>/include/BALL/MOLMEC/MMFF94/MMFF94Parameters.h:530:17: note: in expansion of macro ‘BALL_CREATE’ 530 | BALL_CREATE(MMFF94ESParameters) | ^~~~~~~~~~~ make[5]: *** [CMakeFiles/VIEW.dir/build.make:291: CMakeFiles/VIEW.dir/VIEW_autogen/mocs_compilation.cpp.o] Error 1 make[5]: Leaving directory '/<>/build' make[4]: *** [CMakeFiles/Makefile2:1580: CMakeFiles/VIEW.dir/all] Error 2 make[4]: Leaving directory '/<>/build' make[3]: *** [CMakeFiles/Makefile2:1587: CMakeFiles/VIEW.dir/rule] Error 2 make[3]: Leaving directory '/<>/build' make[2]: *** [Makefile:195: VIEW] Error 2 make[2]: Leaving directory '/<>/build' make[1]: *** [debian/rules:64: override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/<>' make: *** [debian/rules:18: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2022-12-22T00:51:09Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build Type: any Build-Space: 1016400 Build-Time: 5195 Distribution: lunar-proposed Fail-Stage: build Host Architecture: armhf Install-Time: 168 Job: ball_1.5.0+git20180813.37fc53c-11.dsc Machine Architecture: arm64 Package: ball Package-Time: 5371 Source-Version: 1.5.0+git20180813.37fc53c-11 Space: 1016400 Status: attempted Version: 1.5.0+git20180813.37fc53c-11 -------------------------------------------------------------------------------- Finished at 2022-12-22T00:51:09Z Build needed 01:29:31, 1016400k disk space E: Build failure (dpkg-buildpackage died) Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=armhf PACKAGEBUILD-25415993 Scanning for processes to kill in build PACKAGEBUILD-25415993