https://launchpad.net/ubuntu/+source/bambamc/0.0.50-5/+build/22292495 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-053 4.15.0-159-generic #167-Ubuntu SMP Tue Sep 21 08:55:05 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 18 Oct 22:28:12 ntpdate[1715]: adjust time server 10.211.37.1 offset 0.000144 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22292495 --image-type chroot /home/buildd/filecache-default/cfae87993459679a6aa555d9d98919b1d8858654 Creating target for build PACKAGEBUILD-22292495 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22292495 Starting target for build PACKAGEBUILD-22292495 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22292495 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22292495 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22292495 Updating target for build PACKAGEBUILD-22292495 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 Packages [1400 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe amd64 Packages [13.5 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5463 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 Packages [193 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [80.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 Packages [254 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [138 kB] Fetched 22.0 MB in 3s (6876 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files base-passwd bsdutils bzip2 ca-certificates coreutils debianutils fakeroot gzip libapparmor1 libargon2-1 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libcap-ng0 libcap2 libcrypt-dev libcrypt1 libdb5.3 libdebconfclient0 libfakeroot libgdbm-compat4 libgdbm6 libgmp10 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre3 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libtasn1-6 libtinfo6 libuuid1 libzstd1 lockfile-progs make mawk mount ncurses-base ncurses-bin optipng patch pinentry-curses readline-common sed sensible-utils sysvinit-utils tar util-linux xz-utils 75 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After this operation, 1252 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt-dev amd64 1:4.4.18-4ubuntu2 [111 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt1 amd64 1:4.4.18-4ubuntu2 [82.0 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main amd64 base-files amd64 12ubuntu1 [63.3 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 bsdutils amd64 1:2.36.1-8ubuntu2 [82.8 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 coreutils amd64 8.32-4ubuntu3 [1436 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 debianutils amd64 5.5-1 [77.5 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main amd64 gzip amd64 1.10-4ubuntu2 [95.6 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-bin amd64 6.2+20201114-2build2 [180 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 sed amd64 4.7-1ubuntu2 [187 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main amd64 tar amd64 1.34+dfsg-1build2 [295 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 util-linux amd64 2.36.1-8ubuntu2 [1014 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 libdebconfclient0 amd64 0.256ubuntu4 [6306 B] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 base-passwd amd64 3.5.52 [49.0 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main amd64 ncurses-base all 6.2+20201114-2build2 [19.5 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main amd64 sysvinit-utils amd64 2.96-7ubuntu2 [20.8 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 mount amd64 2.36.1-8ubuntu2 [110 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libattr1 amd64 1:2.5.1-1 [13.3 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main amd64 libaudit-common all 1:3.0-2ubuntu3 [4688 B] Get:19 http://ftpmaster.internal/ubuntu jammy/main amd64 libcap-ng0 amd64 0.7.9-2.2build2 [11.6 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main amd64 libaudit1 amd64 1:3.0-2ubuntu3 [45.9 kB] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libblkid1 amd64 2.36.1-8ubuntu2 [98.2 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 bzip2 amd64 1.0.8-4ubuntu4 [34.8 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libbz2-1.0 amd64 1.0.8-4ubuntu4 [34.1 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 libcap2 amd64 1:2.44-1build2 [18.1 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8ubuntu2 [721 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 libgmp10 amd64 2:6.2.1+dfsg-1ubuntu3 [253 kB] Get:27 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgpg-error0 amd64 1.42-3 [68.1 kB] Get:28 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libk5crypto3 amd64 1.18.3-7 [86.2 kB] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libkrb5support0 amd64 1.18.3-7 [32.2 kB] Get:30 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libkrb5-3 amd64 1.18.3-7 [355 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [143 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main amd64 libkeyutils1 amd64 1.6.1-2ubuntu2 [10.3 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main amd64 liblz4-1 amd64 1.9.3-2build1 [57.1 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main amd64 liblzma5 amd64 5.2.5-2build1 [99.8 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libselinux1 amd64 3.1-3build3 [74.2 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libmount1 amd64 2.36.1-8ubuntu2 [116 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre3 amd64 2:8.39-13build4 [245 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main amd64 libsemanage-common all 3.1-1ubuntu3 [9606 B] Get:39 http://ftpmaster.internal/ubuntu jammy/main amd64 libsemanage1 amd64 3.1-1ubuntu3 [96.5 kB] Get:40 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsmartcols1 amd64 2.36.1-8ubuntu2 [49.6 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main amd64 libncurses6 amd64 6.2+20201114-2build2 [110 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main amd64 libncursesw6 amd64 6.2+20201114-2build2 [148 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main amd64 libtinfo6 amd64 6.2+20201114-2build2 [102 kB] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libuuid1 amd64 2.36.1-8ubuntu2 [23.3 kB] Get:45 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libzstd1 amd64 1.4.8+dfsg-3 [324 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main amd64 libnettle8 amd64 3.7.3-1build1 [159 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 libhogweed6 amd64 3.7.3-1build1 [199 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libidn2-0 amd64 2.3.2-2 [66.5 kB] Get:49 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libp11-kit0 amd64 0.24.0-5 [252 kB] Get:50 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libseccomp2 amd64 2.5.1-1ubuntu2 [48.2 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main amd64 libtasn1-6 amd64 4.16.0-2build1 [42.9 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 mawk amd64 1.3.4.20200120-2build1 [103 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 sensible-utils all 0.0.17 [20.1 kB] Get:54 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 ca-certificates all 20211016 [148 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libapparmor1 amd64 3.0.3-0ubuntu2 [37.8 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 libargon2-1 amd64 0~20171227-0.2build22 [19.4 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 libip4tc2 amd64 1.8.7-1ubuntu3 [19.7 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main amd64 libjson-c5 amd64 0.15-2build3 [33.3 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main amd64 readline-common all 8.1-2build1 [53.6 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 libreadline8 amd64 8.1-2build1 [153 kB] Get:61 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsqlite3-0 amd64 3.36.0-2 [641 kB] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgdbm6 amd64 1.21-1 [35.1 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main amd64 xz-utils amd64 5.2.5-2build1 [84.7 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main amd64 libfakeroot amd64 1.25.3-1.1ubuntu3 [31.7 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 fakeroot amd64 1.25.3-1.1ubuntu3 [60.3 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgdbm-compat4 amd64 1.21-1 [6500 B] Get:67 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libisl23 amd64 0.24-2 [728 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main amd64 libmpfr6 amd64 4.1.0-3build2 [1425 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main amd64 libnpth0 amd64 1.6-3build1 [8686 B] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 lockfile-progs amd64 0.1.19 [10.0 kB] Get:71 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 make amd64 4.3-4ubuntu2 [179 kB] Get:72 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 optipng amd64 0.7.7-2 [84.7 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 patch amd64 2.7.6-7build1 [109 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main amd64 pinentry-curses amd64 1.1.1-1build1 [34.3 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libmpc3 amd64 1.2.1-1 [46.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.1 MB in 0s (34.5 MB/s) (Reading database ... 13258 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22292495 amd64 jammy-proposed -c chroot:build-PACKAGEBUILD-22292495 --arch=amd64 --dist=jammy-proposed --nolog -A bambamc_0.0.50-5.dsc Initiating build PACKAGEBUILD-22292495 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-159-generic #167-Ubuntu SMP Tue Sep 21 08:55:05 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lgw01-amd64-053.buildd +==============================================================================+ | bambamc 0.0.50-5 (amd64) Mon, 18 Oct 2021 22:28:31 +0000 | +==============================================================================+ Package: bambamc Version: 0.0.50-5 Source Version: 0.0.50-5 Distribution: jammy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22292495/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bambamc_0.0.50-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/bambamc-RSU0rV/bambamc-0.0.50' with '<>' I: NOTICE: Log filtering will replace 'build/bambamc-RSU0rV' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-RcMK5q/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-RcMK5q/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RcMK5q/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-RcMK5q/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RcMK5q/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-RcMK5q/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (164 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 650 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-RcMK5q/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [650 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 650 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13260 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, zlib1g-dev Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, pkg-config, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-bambamc-dummy' in '/<>/resolver-RcMK5q/apt_archive/sbuild-build-depends-bambamc-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bambamc-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-RcMK5q/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RcMK5q/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-RcMK5q/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RcMK5q/apt_archive ./ Sources [514 B] Get:5 copy:/<>/resolver-RcMK5q/apt_archive ./ Packages [594 B] Fetched 2071 B in 0s (197 kB/s) Reading package lists... Reading package lists... Install bambamc build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils d-shlibs debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config po-debconf sbuild-build-depends-bambamc-dummy zlib1g-dev 0 upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 19.6 MB of archives. After this operation, 68.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-RcMK5q/apt_archive ./ sbuild-build-depends-bambamc-dummy 0.invalid.0 [686 B] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 bsdextrautils amd64 2.36.1-8ubuntu2 [75.0 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main amd64 libuchardet0 amd64 0.0.7-1build1 [76.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main amd64 groff-base amd64 1.22.4-7 [956 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 libpipeline1 amd64 1.5.3-1build1 [23.2 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main amd64 man-db amd64 2.9.4-2build1 [1180 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libelf1 amd64 0.185-2 [51.3 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main amd64 libglib2.0-0 amd64 2.68.4-1ubuntu1 [1424 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main amd64 libicu67 amd64 67.1-7ubuntu1 [10.1 MB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libxml2 amd64 2.9.12+dfsg-5 [761 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main amd64 libmagic-mgc amd64 1:5.39-3build1 [236 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 libmagic1 amd64 1:5.39-3build1 [88.7 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 file amd64 1:5.39-3build1 [24.5 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main amd64 gettext-base amd64 0.21-4ubuntu3 [36.6 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main amd64 libsigsegv2 amd64 2.13-1ubuntu2 [14.6 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main amd64 m4 amd64 1.4.18-5ubuntu1 [199 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 autoconf all 2.71-2 [338 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main amd64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main amd64 automake all 1:1.16.4-2 [557 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main amd64 autopoint all 0.21-4ubuntu3 [422 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/universe amd64 d-shlibs all 0.99 [9656 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 libdebhelper-perl all 13.3.4ubuntu2 [62.5 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libtool all 2.4.6-15build1 [164 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main amd64 dh-autoreconf all 20 [16.1 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [17.5 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 dh-strip-nondeterminism all 1.12.0-1 [5228 B] Get:29 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libdw1 amd64 0.185-2 [249 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main amd64 debugedit amd64 1:5.0-0ubuntu2 [47.9 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main amd64 dwz amd64 0.14-1build1 [104 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main amd64 gettext amd64 0.21-4ubuntu3 [824 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 debhelper all 13.3.4ubuntu2 [921 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main amd64 pkg-config amd64 0.29.2-1ubuntu2 [48.2 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu7 [164 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.6 MB in 0s (44.6 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13260 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8ubuntu2_amd64.deb ... Unpacking bsdextrautils (2.36.1-8ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1build1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_amd64.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1build1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2build1_amd64.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../05-libelf1_0.185-2_amd64.deb ... Unpacking libelf1:amd64 (0.185-2) ... 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Selecting previously unselected package sbuild-build-depends-bambamc-dummy. Preparing to unpack .../36-sbuild-build-depends-bambamc-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-bambamc-dummy (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.3-1build1) ... Setting up bsdextrautils (2.36.1-8ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7ubuntu1) ... Setting up libmagic-mgc (1:5.39-3build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.68.4-1ubuntu1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4ubuntu2) ... Setting up libmagic1:amd64 (1:5.39-3build1) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.39-3build1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu2) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up d-shlibs (0.99) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up libuchardet0:amd64 (0.0.7-1build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libdw1:amd64 (0.185-2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libtool (2.4.6-15build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up sbuild-build-depends-bambamc-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-159-generic amd64 (x86_64) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-7ubuntu2 gcc-11_11.2.0-7ubuntu2 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 binutils-x86-64-linux-gnu_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu2 bsdutils_1:2.36.1-8ubuntu2 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-7ubuntu2 d-shlibs_0.99 dash_0.5.11+git20210120+802ebd4-1build1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu3 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-7ubuntu2 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-7ubuntu2 gcc-11-base_11.2.0-7ubuntu2 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapparmor1_3.0.3-0ubuntu2 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-7ubuntu2 libassuan0_2.5.5-1 libatomic1_11.2.0-7ubuntu2 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37-7ubuntu1 libblkid1_2.36.1-8ubuntu2 libbz2-1.0_1.0.8-4ubuntu4 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-7ubuntu2 libcom-err2_1.46.3-1ubuntu3 libcrypt-dev_1:4.4.18-4ubuntu2 libcrypt1_1:4.4.18-4ubuntu2 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.3.4ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-2 libelf1_0.185-2 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-11-dev_11.2.0-7ubuntu2 libgcc-s1_11.2.0-7ubuntu2 libgcrypt20_1.8.7-5ubuntu2 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libglib2.0-0_2.68.4-1ubuntu1 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-7ubuntu2 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1build1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu3 libisl23_0.24-2 libitm1_11.2.0-7ubuntu2 libjson-c5_0.15-2build3 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu4 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblsan0_11.2.0-7ubuntu2 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.39-3build1 libmagic1_1:5.39-3build1 libmount1_2.36.1-8ubuntu2 libmpc3_1.2.1-1 libmpfr6_4.1.0-3build2 libncurses6_6.2+20201114-2build2 libncursesw6_6.2+20201114-2build2 libnettle8_3.7.3-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-5 libpam-modules_1.3.1-5ubuntu11 libpam-modules-bin_1.3.1-5ubuntu11 libpam-runtime_1.3.1-5ubuntu11 libpam0g_1.3.1-5ubuntu11 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1build1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libquadmath0_11.2.0-7ubuntu2 libreadline8_8.1-2build1 libseccomp2_2.5.1-1ubuntu2 libselinux1_3.1-3build3 libsemanage-common_3.1-1ubuntu3 libsemanage1_3.1-1ubuntu3 libsepol1_3.1-1ubuntu2 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.36.1-8ubuntu2 libsqlite3-0_3.36.0-2 libss2_1.46.3-1ubuntu3 libssl1.1_1.1.1l-1ubuntu1 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 libsub-override-perl_0.09-2 libsystemd0_248.3-1ubuntu8 libtasn1-6_4.16.0-2build1 libtinfo6_6.2+20201114-2build2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libtsan0_11.2.0-7ubuntu2 libubsan1_11.2.0-7ubuntu2 libuchardet0_0.0.7-1build1 libudev1_248.3-1ubuntu8 libunistring2_0.9.10-6 libuuid1_2.36.1-8ubuntu2 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.13.0-19.19 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 mount_2.36.1-8ubuntu2 ncurses-base_6.2+20201114-2build2 ncurses-bin_6.2+20201114-2build2 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkg-config_0.29.2-1ubuntu2 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-bambamc-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021a-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu2 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Sep 29 16:26:29 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bambamc_0.0.50-5.dsc dpkg-source: info: extracting bambamc in /<> dpkg-source: info: unpacking bambamc_0.0.50.orig.tar.gz dpkg-source: info: unpacking bambamc_0.0.50-5.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22292495 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22292495 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22292495 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bambamc dpkg-buildpackage: info: source version 0.0.50-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:3: warning: The macro `AC_CANONICAL_SYSTEM' is obsolete. configure.in:3: You should run autoupdate. ./lib/autoconf/general.m4:2081: AC_CANONICAL_SYSTEM is expanded from... configure.in:3: the top level configure.in:4: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.in:4: You should run autoupdate. m4/libtool.m4:99: AC_PROG_LIBTOOL is expanded from... configure.in:4: the top level configure.in:6: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.in:6: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:1017: AM_CONFIG_HEADER is expanded from... configure.in:6: the top level configure.in:15: warning: The macro `AC_PROG_CC_C99' is obsolete. configure.in:15: You should run autoupdate. ./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from... configure.in:15: the top level configure.in:27: warning: The macro `AC_HEADER_STDC' is obsolete. configure.in:27: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.in:27: the top level configure.in:40: warning: The macro `AC_TRY_LINK' is obsolete. configure.in:40: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.in:40: the top level configure.in:68: warning: The macro `AC_TRY_LINK' is obsolete. configure.in:68: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.in:68: the top level configure.in:144: warning: The macro `AC_TRY_LINK' is obsolete. configure.in:144: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.in:144: the top level configure.in:165: warning: AC_OUTPUT should be used without arguments. configure.in:165: You should run autoupdate. autoheader: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:4: installing './compile' configure.in:3: installing './config.guess' configure.in:3: installing './config.sub' configure.in:7: installing './install-sh' configure.in:7: installing './missing' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationHash.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollatorInterface.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_FormatAlignment.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationHashEntry.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_FormatNumber.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationOutputVector.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamHeaderInfo.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_Hash.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationTempFileGenerator.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamWriter.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_List.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationVector.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_CharBuffer.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_ListNode.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollator.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_Chromosome.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_GzipReader.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_LineParsing.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamFileHeader.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamAlignmentPut.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamSingleAlignment.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamFileDecoder.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_GzipWriter.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_GzipFileDecoder.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BgzfCompressor.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_LineBuffer.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_SamInfo.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_SamFileDecoder.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_SamBamFileDecoder.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_StrDup.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:40: warning: source file 'test/bamreadertest.c' is in a subdirectory, src/Makefile.am:40: but option 'subdir-objects' is disabled src/Makefile.am:44: warning: source file 'test/bamwritertest.c' is in a subdirectory, src/Makefile.am:44: but option 'subdir-objects' is disabled src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... none checking for egrep... (cached) /usr/bin/grep -E checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib >= 0... yes checking for zlib >= 0... yes checking whether we can compile a zlib program... yes checking for _mkdir... no checking for direct.h... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating ubuntu.sh config.status: creating bambamc.pc config.status: creating src/bambamc/BamBam_Config.h config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands dh_auto_build make -j4 make[1]: Entering directory '/<>' make all-recursive make[2]: Entering directory '/<>' Making all in src make[3]: Entering directory '/<>/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o bamreadertest-bamreadertest.o `test -f 'test/bamreadertest.c' || echo './'`test/bamreadertest.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationHash.lo `test -f 'bambamc/BamBam_BamCollationHash.c' || echo './'`bambamc/BamBam_BamCollationHash.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollatorInterface.lo `test -f 'bambamc/BamBam_BamCollatorInterface.c' || echo './'`bambamc/BamBam_BamCollatorInterface.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_FormatAlignment.lo `test -f 'bambamc/BamBam_FormatAlignment.c' || echo './'`bambamc/BamBam_FormatAlignment.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationHash.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationHash.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollatorInterface.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollatorInterface.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_FormatAlignment.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_FormatAlignment.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationHash.c -o libbambamc_la-BamBam_BamCollationHash.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationHashEntry.lo `test -f 'bambamc/BamBam_BamCollationHashEntry.c' || echo './'`bambamc/BamBam_BamCollationHashEntry.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationHashEntry.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationHashEntry.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_FormatNumber.lo `test -f 'bambamc/BamBam_FormatNumber.c' || echo './'`bambamc/BamBam_FormatNumber.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_FormatAlignment.c -o libbambamc_la-BamBam_FormatAlignment.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_FormatNumber.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_FormatNumber.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollatorInterface.c -o libbambamc_la-BamBam_BamCollatorInterface.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationHashEntry.c -o libbambamc_la-BamBam_BamCollationHashEntry.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_FormatNumber.c -o libbambamc_la-BamBam_FormatNumber.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationOutputVector.lo `test -f 'bambamc/BamBam_BamCollationOutputVector.c' || echo './'`bambamc/BamBam_BamCollationOutputVector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationOutputVector.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationOutputVector.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamHeaderInfo.lo `test -f 'bambamc/BamBam_BamHeaderInfo.c' || echo './'`bambamc/BamBam_BamHeaderInfo.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_Hash.lo `test -f 'bambamc/BamBam_Hash.c' || echo './'`bambamc/BamBam_Hash.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamHeaderInfo.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamHeaderInfo.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_Hash.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_Hash.o bambamc/BamBam_Hash.c: In function ‘hash’: bambamc/BamBam_Hash.c:83:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 83 | case 11: c+=((uint32_t)k[10]<<24); | ~^~~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:84:17: note: here 84 | case 10: c+=((uint32_t)k[9]<<16); | ^~~~ bambamc/BamBam_Hash.c:84:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 84 | case 10: c+=((uint32_t)k[9]<<16); | ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:85:17: note: here 85 | case 9 : c+=((uint32_t)k[8]<<8); | ^~~~ bambamc/BamBam_Hash.c:85:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 85 | case 9 : c+=((uint32_t)k[8]<<8); | ~^~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:87:17: note: here 87 | case 8 : b+=((uint32_t)k[7]<<24); | ^~~~ bambamc/BamBam_Hash.c:87:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 87 | case 8 : b+=((uint32_t)k[7]<<24); | ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:88:17: note: here 88 | case 7 : b+=((uint32_t)k[6]<<16); | ^~~~ bambamc/BamBam_Hash.c:88:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 88 | case 7 : b+=((uint32_t)k[6]<<16); | ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:89:17: note: here 89 | case 6 : b+=((uint32_t)k[5]<<8); | ^~~~ bambamc/BamBam_Hash.c:89:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 89 | case 6 : b+=((uint32_t)k[5]<<8); | ~^~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:90:17: note: here 90 | case 5 : b+=k[4]; | ^~~~ bambamc/BamBam_Hash.c:90:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 90 | case 5 : b+=k[4]; | ~^~~~~~ bambamc/BamBam_Hash.c:91:17: note: here 91 | case 4 : a+=((uint32_t)k[3]<<24); | ^~~~ bambamc/BamBam_Hash.c:91:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 91 | case 4 : a+=((uint32_t)k[3]<<24); | ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:92:17: note: here 92 | case 3 : a+=((uint32_t)k[2]<<16); | ^~~~ bambamc/BamBam_Hash.c:92:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 92 | case 3 : a+=((uint32_t)k[2]<<16); | ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:93:17: note: here 93 | case 2 : a+=((uint32_t)k[1]<<8); | ^~~~ bambamc/BamBam_Hash.c:93:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 93 | case 2 : a+=((uint32_t)k[1]<<8); | ~^~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:94:17: note: here 94 | case 1 : a+=k[0]; | ^~~~ /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationTempFileGenerator.lo `test -f 'bambamc/BamBam_BamCollationTempFileGenerator.c' || echo './'`bambamc/BamBam_BamCollationTempFileGenerator.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationOutputVector.c -o libbambamc_la-BamBam_BamCollationOutputVector.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationTempFileGenerator.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationTempFileGenerator.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_Hash.c -o libbambamc_la-BamBam_Hash.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamWriter.lo `test -f 'bambamc/BamBam_BamWriter.c' || echo './'`bambamc/BamBam_BamWriter.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_List.lo `test -f 'bambamc/BamBam_List.c' || echo './'`bambamc/BamBam_List.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationTempFileGenerator.c -o libbambamc_la-BamBam_BamCollationTempFileGenerator.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamWriter.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamWriter.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamHeaderInfo.c -o libbambamc_la-BamBam_BamHeaderInfo.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_List.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_List.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationVector.lo `test -f 'bambamc/BamBam_BamCollationVector.c' || echo './'`bambamc/BamBam_BamCollationVector.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_List.c -o libbambamc_la-BamBam_List.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamWriter.c -o libbambamc_la-BamBam_BamWriter.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationVector.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationVector.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_CharBuffer.lo `test -f 'bambamc/BamBam_CharBuffer.c' || echo './'`bambamc/BamBam_CharBuffer.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_ListNode.lo `test -f 'bambamc/BamBam_ListNode.c' || echo './'`bambamc/BamBam_ListNode.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollator.lo `test -f 'bambamc/BamBam_BamCollator.c' || echo './'`bambamc/BamBam_BamCollator.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_CharBuffer.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_CharBuffer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_ListNode.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_ListNode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationVector.c -o libbambamc_la-BamBam_BamCollationVector.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollator.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollator.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_CharBuffer.c -o libbambamc_la-BamBam_CharBuffer.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_ListNode.c -o libbambamc_la-BamBam_ListNode.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_Chromosome.lo `test -f 'bambamc/BamBam_Chromosome.c' || echo './'`bambamc/BamBam_Chromosome.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_GzipReader.lo `test -f 'bambamc/BamBam_GzipReader.c' || echo './'`bambamc/BamBam_GzipReader.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_LineParsing.lo `test -f 'bambamc/BamBam_LineParsing.c' || echo './'`bambamc/BamBam_LineParsing.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_Chromosome.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_Chromosome.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_LineParsing.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_LineParsing.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipReader.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_GzipReader.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_Chromosome.c -o libbambamc_la-BamBam_Chromosome.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamFileHeader.lo `test -f 'bambamc/BamBam_BamFileHeader.c' || echo './'`bambamc/BamBam_BamFileHeader.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipReader.c -o libbambamc_la-BamBam_GzipReader.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamFileHeader.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamFileHeader.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_LineParsing.c -o libbambamc_la-BamBam_LineParsing.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollator.c -o libbambamc_la-BamBam_BamCollator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamAlignmentPut.lo `test -f 'bambamc/BamBam_BamAlignmentPut.c' || echo './'`bambamc/BamBam_BamAlignmentPut.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamAlignmentPut.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamAlignmentPut.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamSingleAlignment.lo `test -f 'bambamc/BamBam_BamSingleAlignment.c' || echo './'`bambamc/BamBam_BamSingleAlignment.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamSingleAlignment.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamSingleAlignment.o bambamc/BamBam_BamSingleAlignment.c: In function ‘BamBam_BamSingleAlignment_LoadAlignment’: bambamc/BamBam_BamSingleAlignment.c:882:48: warning: array subscript has type ‘char’ [-Wchar-subscripts] 882 | if ( ! bambamc_qnameValidTable[*cc] ) | ^~~ bambamc/BamBam_BamSingleAlignment.c:910:65: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare] 910 | if ( ue-BamBam_BamSingleAlignment_GetEncodedCigar(data) < BamBam_BamSingleAlignment_GetNC(data)*sizeof(uint32_t) ) | ^ bambamc/BamBam_BamSingleAlignment.c:957:29: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 957 | if ( ciglen != BamBam_BamSingleAlignment_GetLSeq(data) ) | ^~ bambamc/BamBam_BamSingleAlignment.c:1089:64: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1089 | if ( (ue-auxc) < (3+1+4+ 1*alen) ) | ^ bambamc/BamBam_BamSingleAlignment.c:1098:64: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1098 | if ( (ue-auxc) < (3+1+4+ 2*alen) ) | ^ bambamc/BamBam_BamSingleAlignment.c:1108:64: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘uint64_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1108 | if ( (ue-auxc) < (3+1+4+ 4*alen) ) | ^ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamFileHeader.c -o libbambamc_la-BamBam_BamFileHeader.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamAlignmentPut.c -o libbambamc_la-BamBam_BamAlignmentPut.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamFileDecoder.lo `test -f 'bambamc/BamBam_BamFileDecoder.c' || echo './'`bambamc/BamBam_BamFileDecoder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamFileDecoder.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamFileDecoder.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamFileDecoder.c -o libbambamc_la-BamBam_BamFileDecoder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_GzipWriter.lo `test -f 'bambamc/BamBam_GzipWriter.c' || echo './'`bambamc/BamBam_GzipWriter.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipWriter.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_GzipWriter.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto 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-Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_LineBuffer.lo `test -f 'bambamc/BamBam_LineBuffer.c' || echo './'`bambamc/BamBam_LineBuffer.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_SamInfo.lo `test -f 'bambamc/BamBam_SamInfo.c' || echo './'`bambamc/BamBam_SamInfo.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_LineBuffer.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_LineBuffer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamSingleAlignment.c -o libbambamc_la-BamBam_BamSingleAlignment.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamInfo.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_SamInfo.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BgzfCompressor.c -o libbambamc_la-BamBam_BgzfCompressor.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. 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-ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_SamBamFileDecoder.lo `test -f 'bambamc/BamBam_SamBamFileDecoder.c' || echo './'`bambamc/BamBam_SamBamFileDecoder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamBamFileDecoder.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_SamBamFileDecoder.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamInfo.c -o libbambamc_la-BamBam_SamInfo.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamFileDecoder.c -o libbambamc_la-BamBam_SamFileDecoder.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamBamFileDecoder.c -o libbambamc_la-BamBam_SamBamFileDecoder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_StrDup.lo `test -f 'bambamc/BamBam_StrDup.c' || echo './'`bambamc/BamBam_StrDup.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_StrDup.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_StrDup.o gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o bamwritertest-bamwritertest.o `test -f 'test/bamwritertest.c' || echo './'`test/bamwritertest.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_StrDup.c -o libbambamc_la-BamBam_StrDup.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -version-info 0:50:0 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -o libbambamc.la -rpath /usr/lib/x86_64-linux-gnu libbambamc_la-BamBam_BamCollationHash.lo libbambamc_la-BamBam_BamCollatorInterface.lo libbambamc_la-BamBam_FormatAlignment.lo libbambamc_la-BamBam_BamCollationHashEntry.lo libbambamc_la-BamBam_FormatNumber.lo libbambamc_la-BamBam_BamCollationOutputVector.lo libbambamc_la-BamBam_BamHeaderInfo.lo libbambamc_la-BamBam_Hash.lo libbambamc_la-BamBam_BamCollationTempFileGenerator.lo libbambamc_la-BamBam_BamWriter.lo libbambamc_la-BamBam_List.lo libbambamc_la-BamBam_BamCollationVector.lo libbambamc_la-BamBam_CharBuffer.lo libbambamc_la-BamBam_ListNode.lo libbambamc_la-BamBam_BamCollator.lo libbambamc_la-BamBam_Chromosome.lo libbambamc_la-BamBam_GzipReader.lo libbambamc_la-BamBam_LineParsing.lo libbambamc_la-BamBam_BamFileHeader.lo libbambamc_la-BamBam_BamAlignmentPut.lo libbambamc_la-BamBam_BamSingleAlignment.lo libbambamc_la-BamBam_BamFileDecoder.lo libbambamc_la-BamBam_GzipWriter.lo libbambamc_la-BamBam_GzipFileDecoder.lo libbambamc_la-BamBam_BgzfCompressor.lo libbambamc_la-BamBam_LineBuffer.lo libbambamc_la-BamBam_SamInfo.lo libbambamc_la-BamBam_SamFileDecoder.lo libbambamc_la-BamBam_SamBamFileDecoder.lo libbambamc_la-BamBam_StrDup.lo -lz libtool: link: gcc -shared -fPIC -DPIC .libs/libbambamc_la-BamBam_BamCollationHash.o .libs/libbambamc_la-BamBam_BamCollatorInterface.o .libs/libbambamc_la-BamBam_FormatAlignment.o .libs/libbambamc_la-BamBam_BamCollationHashEntry.o .libs/libbambamc_la-BamBam_FormatNumber.o .libs/libbambamc_la-BamBam_BamCollationOutputVector.o .libs/libbambamc_la-BamBam_BamHeaderInfo.o .libs/libbambamc_la-BamBam_Hash.o .libs/libbambamc_la-BamBam_BamCollationTempFileGenerator.o .libs/libbambamc_la-BamBam_BamWriter.o .libs/libbambamc_la-BamBam_List.o .libs/libbambamc_la-BamBam_BamCollationVector.o .libs/libbambamc_la-BamBam_CharBuffer.o .libs/libbambamc_la-BamBam_ListNode.o .libs/libbambamc_la-BamBam_BamCollator.o .libs/libbambamc_la-BamBam_Chromosome.o .libs/libbambamc_la-BamBam_GzipReader.o .libs/libbambamc_la-BamBam_LineParsing.o .libs/libbambamc_la-BamBam_BamFileHeader.o .libs/libbambamc_la-BamBam_BamAlignmentPut.o .libs/libbambamc_la-BamBam_BamSingleAlignment.o .libs/libbambamc_la-BamBam_BamFileDecoder.o .libs/libbambamc_la-BamBam_GzipWriter.o .libs/libbambamc_la-BamBam_GzipFileDecoder.o .libs/libbambamc_la-BamBam_BgzfCompressor.o .libs/libbambamc_la-BamBam_LineBuffer.o .libs/libbambamc_la-BamBam_SamInfo.o .libs/libbambamc_la-BamBam_SamFileDecoder.o .libs/libbambamc_la-BamBam_SamBamFileDecoder.o .libs/libbambamc_la-BamBam_StrDup.o -lz -g -O2 -flto=auto -fstack-protector-strong -O3 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z -Wl,relro -Wl,-soname -Wl,libbambamc.so.0 -o .libs/libbambamc.so.0.0.50 libtool: link: (cd ".libs" && rm -f "libbambamc.so.0" && ln -s "libbambamc.so.0.0.50" "libbambamc.so.0") libtool: link: (cd ".libs" && rm -f "libbambamc.so" && ln -s "libbambamc.so.0.0.50" "libbambamc.so") libtool: link: ar cr .libs/libbambamc.a libbambamc_la-BamBam_BamCollationHash.o libbambamc_la-BamBam_BamCollatorInterface.o libbambamc_la-BamBam_FormatAlignment.o libbambamc_la-BamBam_BamCollationHashEntry.o libbambamc_la-BamBam_FormatNumber.o libbambamc_la-BamBam_BamCollationOutputVector.o libbambamc_la-BamBam_BamHeaderInfo.o libbambamc_la-BamBam_Hash.o libbambamc_la-BamBam_BamCollationTempFileGenerator.o libbambamc_la-BamBam_BamWriter.o libbambamc_la-BamBam_List.o libbambamc_la-BamBam_BamCollationVector.o libbambamc_la-BamBam_CharBuffer.o libbambamc_la-BamBam_ListNode.o libbambamc_la-BamBam_BamCollator.o libbambamc_la-BamBam_Chromosome.o libbambamc_la-BamBam_GzipReader.o libbambamc_la-BamBam_LineParsing.o libbambamc_la-BamBam_BamFileHeader.o libbambamc_la-BamBam_BamAlignmentPut.o libbambamc_la-BamBam_BamSingleAlignment.o libbambamc_la-BamBam_BamFileDecoder.o libbambamc_la-BamBam_GzipWriter.o libbambamc_la-BamBam_GzipFileDecoder.o libbambamc_la-BamBam_BgzfCompressor.o libbambamc_la-BamBam_LineBuffer.o libbambamc_la-BamBam_SamInfo.o libbambamc_la-BamBam_SamFileDecoder.o libbambamc_la-BamBam_SamBamFileDecoder.o libbambamc_la-BamBam_StrDup.o libtool: link: ranlib .libs/libbambamc.a libtool: link: ( cd ".libs" && rm -f "libbambamc.la" && ln -s "../libbambamc.la" "libbambamc.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -o bamreadertest bamreadertest-bamreadertest.o libbambamc.la -lz /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -o bamwritertest bamwritertest-bamwritertest.o libbambamc.la -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -Wl,-z -Wl,relro -o .libs/bamreadertest bamreadertest-bamreadertest.o ./.libs/libbambamc.so -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -Wl,-z -Wl,relro -o .libs/bamwritertest bamwritertest-bamwritertest.o ./.libs/libbambamc.so -lz make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in src make[2]: Entering directory '/<>/src' make[3]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libbambamc.la '/<>/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libbambamc.so.0.0.50 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50 libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbambamc.so.0.0.50 libbambamc.so.0 || { rm -f libbambamc.so.0 && ln -s libbambamc.so.0.0.50 libbambamc.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbambamc.so.0.0.50 libbambamc.so || { rm -f libbambamc.so && ln -s libbambamc.so.0.0.50 libbambamc.so; }; }) libtool: install: /usr/bin/install -c .libs/libbambamc.lai /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.la libtool: install: /usr/bin/install -c .libs/libbambamc.a /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.a libtool: install: ranlib /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/bambamc' /usr/bin/install -c -m 644 bambamc/BamBam_BamAlignmentPut.h bambamc/BamBam_BamFlagBase.h bambamc/BamBam_FormatAlignment.h bambamc/BamBam_BamCollationHashEntry.h bambamc/BamBam_FormatNumber.h bambamc/BamBam_BamCollationHash.h bambamc/BamBam_BamHeaderInfo.h bambamc/BamBam_GzipReader.h bambamc/BamBam_BamCollationOutputVector.h bambamc/BamBam_BamSingleAlignment.h bambamc/BamBam_Hash.h bambamc/BamBam_BamCollationTempFileGenerator.h bambamc/BamBam_LineParsing.h bambamc/BamBam_BamCollationVector.h bambamc/BamBam_BamWriter.h bambamc/BamBam_List.h bambamc/BamBam_BamCollator.h bambamc/BamBam_CharBuffer.h bambamc/BamBam_ListNode.h bambamc/BamBam_BamCollatorInterface.h bambamc/BamBam_Chromosome.h bambamc/BamBam_MergeHeapEntry.h bambamc/BamBam_BamFileDecoder.h bambamc/BamBam_CollatorState.h bambamc/BamBam_Unused.h bambamc/BamBam_BamFileHeader.h bambamc/BamBam_FastQRead.h bambamc/BamBam_Config.h bambamc/BamBam_GzipWriter.h bambamc/BamBam_GzipFileDecoder.h bambamc/BamBam_BgzfCompressor.h bambamc/BamBam_LineBuffer.h bambamc/BamBam_SamInfo.h bambamc/BamBam_SamFileDecoder.h bambamc/BamBam_SamBamFileDecoder.h bambamc/BamBam_StrDup.h '/<>/debian/tmp/usr/include/bambamc' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 bambamc.pc '/<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/lib*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbambamc-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbambamc0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.a debian/libbambamc-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.so debian/libbambamc-dev/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.so.0 debian/libbambamc0/usr/lib/x86_64-linux-gnu mv /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50 debian/libbambamc0/usr/lib/x86_64-linux-gnu PKGDEV=libbambamc-dev PKGSHL=libbambamc0 install -d -m 755 debian/libbambamc-dev/usr/include mv debian/tmp/usr/include/bambamc debian/libbambamc-dev/usr/include find debian -name "lib*.la" -delete dh_install make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a 6a432aaf7fe1fae511814a8be7519543d50c4ed3 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbambamc-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libbambamc-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing libbambamc0 (in debian/libbambamc0); do_strip: , oemstrip: pkgstriptranslations: processing libbambamc-dev (in debian/libbambamc-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbambamc0-dbgsym (in debian/.debhelper/libbambamc0/dbgsym-root); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/libbambamc0/DEBIAN/control, package libbambamc0, directory debian/libbambamc0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbambamc0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbambamc0' in '../libbambamc0_0.0.50-5_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/libbambamc0/dbgsym-root/DEBIAN/control, package libbambamc0-dbgsym, directory debian/.debhelper/libbambamc0/dbgsym-root dpkg-deb: building package 'libbambamc0-dbgsym' in 'debian/.debhelper/scratch-space/build-libbambamc0/libbambamc0-dbgsym_0.0.50-5_amd64.deb'. Renaming libbambamc0-dbgsym_0.0.50-5_amd64.deb to libbambamc0-dbgsym_0.0.50-5_amd64.ddeb /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/libbambamc-dev/DEBIAN/control, package libbambamc-dev, directory debian/libbambamc-dev Searching for duplicated docs in dependency libbambamc0... symlinking changelog.Debian.gz in libbambamc-dev to file in libbambamc0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbambamc-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbambamc-dev' in '../libbambamc-dev_0.0.50-5_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../bambamc_0.0.50-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-18T22:28:59Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bambamc_0.0.50-5_amd64.changes: ------------------------------- Format: 1.8 Date: Wed, 29 Sep 2021 18:25:12 +0200 Source: bambamc Binary: libbambamc-dev libbambamc0 Built-For-Profiles: noudeb Architecture: amd64 Version: 0.0.50-5 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: libbambamc-dev - Development files for reading and writing BAM (genome alignment) libbambamc0 - Runtime library for reading and writing BAM (genome alignment) fi Changes: bambamc (0.0.50-5) unstable; urgency=medium . * Fix watchfile to detect new versions on github (routine-update) * Standards-Version: 4.6.0 (routine-update) * Apply multi-arch hints. + libbambamc-dev, libbambamc0: Add Multi-Arch: same. * watch file standard 4 (routine-update) Checksums-Sha1: 79612be2feb490e4daf02b6bb36298eb7f42efc9 6667 bambamc_0.0.50-5_amd64.buildinfo 0a8c530d8519ceec9fa21b065ced15904dc08a4e 54178 libbambamc-dev_0.0.50-5_amd64.deb e6fc1631f1b4de54d9f41701fb8e99fd256af882 110518 libbambamc0-dbgsym_0.0.50-5_amd64.ddeb 8e53ed4321cfbdbde76a54750dd98ba5fad704c2 39338 libbambamc0_0.0.50-5_amd64.deb Checksums-Sha256: cc78e4120a03ddfee413b151434985996a3a671455bde63ad8b2f91e7bb951d1 6667 bambamc_0.0.50-5_amd64.buildinfo 580139db259d2896535b25ec5f0fa6ec235c37965f96bf3b562e2583469aedba 54178 libbambamc-dev_0.0.50-5_amd64.deb bc14d72f68c35e4500818df3835d7484bceacdb1e21d896eabb8b4806839a5ce 110518 libbambamc0-dbgsym_0.0.50-5_amd64.ddeb c1f79e3ca3f6051158c81c15748df20c6dca8bbe6304d4a14bec8475269264b2 39338 libbambamc0_0.0.50-5_amd64.deb Files: d30c7fa7601686ec1e6db1efca2a9aa9 6667 science optional bambamc_0.0.50-5_amd64.buildinfo 2bc313921f7c29228feb5ea2f89b80cc 54178 libdevel optional libbambamc-dev_0.0.50-5_amd64.deb f87dcd09728ea6f5979b17675730c2f3 110518 debug optional libbambamc0-dbgsym_0.0.50-5_amd64.ddeb 6abdfc3ad56f83b22aca90aa83bdc7b7 39338 libs optional libbambamc0_0.0.50-5_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: bambamc Binary: libbambamc-dev libbambamc0 libbambamc0-dbgsym Architecture: amd64 Version: 0.0.50-5 Checksums-Md5: 2bc313921f7c29228feb5ea2f89b80cc 54178 libbambamc-dev_0.0.50-5_amd64.deb f87dcd09728ea6f5979b17675730c2f3 110518 libbambamc0-dbgsym_0.0.50-5_amd64.ddeb 6abdfc3ad56f83b22aca90aa83bdc7b7 39338 libbambamc0_0.0.50-5_amd64.deb Checksums-Sha1: 0a8c530d8519ceec9fa21b065ced15904dc08a4e 54178 libbambamc-dev_0.0.50-5_amd64.deb e6fc1631f1b4de54d9f41701fb8e99fd256af882 110518 libbambamc0-dbgsym_0.0.50-5_amd64.ddeb 8e53ed4321cfbdbde76a54750dd98ba5fad704c2 39338 libbambamc0_0.0.50-5_amd64.deb Checksums-Sha256: 580139db259d2896535b25ec5f0fa6ec235c37965f96bf3b562e2583469aedba 54178 libbambamc-dev_0.0.50-5_amd64.deb bc14d72f68c35e4500818df3835d7484bceacdb1e21d896eabb8b4806839a5ce 110518 libbambamc0-dbgsym_0.0.50-5_amd64.ddeb c1f79e3ca3f6051158c81c15748df20c6dca8bbe6304d4a14bec8475269264b2 39338 libbambamc0_0.0.50-5_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Mon, 18 Oct 2021 22:28:58 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu5), apt (= 2.3.9), autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu1), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-7ubuntu1), binutils-common (= 2.37-7ubuntu1), binutils-x86-64-linux-gnu (= 2.37-7ubuntu1), bsdextrautils (= 2.36.1-8ubuntu2), bsdutils (= 1:2.36.1-8ubuntu2), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-7ubuntu2), d-shlibs (= 0.99), dash (= 0.5.11+git20210120+802ebd4-1build1), debconf (= 1.5.77), debhelper (= 13.3.4ubuntu2), debianutils (= 5.5-1), debugedit (= 1:5.0-0ubuntu2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.39-3build1), findutils (= 4.8.0-1ubuntu2), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-7ubuntu2), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-7ubuntu2), gcc-11-base (= 11.2.0-7ubuntu2), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), gpgv (= 2.2.20-1ubuntu4), grep (= 3.7-0ubuntu1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libapt-pkg6.0 (= 2.3.9), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-7ubuntu2), libatomic1 (= 11.2.0-7ubuntu2), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.37-7ubuntu1), libblkid1 (= 2.36.1-8ubuntu2), libbz2-1.0 (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-7ubuntu2), libcom-err2 (= 1.46.3-1ubuntu3), libcrypt-dev (= 1:4.4.18-4ubuntu2), libcrypt1 (= 1:4.4.18-4ubuntu2), libctf-nobfd0 (= 2.37-7ubuntu1), libctf0 (= 2.37-7ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.3.4ubuntu2), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.185-2), libelf1 (= 0.185-2), libffi8 (= 3.4.2-1ubuntu5), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-11-dev (= 11.2.0-7ubuntu2), libgcc-s1 (= 11.2.0-7ubuntu2), libgcrypt20 (= 1.8.7-5ubuntu2), libgdbm-compat4 (= 1.21-1), libgdbm6 (= 1.21-1), libglib2.0-0 (= 2.68.4-1ubuntu1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgnutls30 (= 3.7.1-5ubuntu1), libgomp1 (= 11.2.0-7ubuntu2), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1build1), libicu67 (= 67.1-7ubuntu1), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-7ubuntu2), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-7ubuntu2), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.39-3build1), libmagic1 (= 1:5.39-3build1), libmount1 (= 2.36.1-8ubuntu2), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libnettle8 (= 3.7.3-1build1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libp11-kit0 (= 0.24.0-5), libpam-modules (= 1.3.1-5ubuntu11), libpam-modules-bin (= 1.3.1-5ubuntu11), libpam-runtime (= 1.3.1-5ubuntu11), libpam0g (= 1.3.1-5ubuntu11), libpcre2-8-0 (= 10.37-0ubuntu2), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.3-1build1), libquadmath0 (= 11.2.0-7ubuntu2), libseccomp2 (= 2.5.1-1ubuntu2), libselinux1 (= 3.1-3build3), libsemanage-common (= 3.1-1ubuntu3), libsemanage1 (= 3.1-1ubuntu3), libsepol1 (= 3.1-1ubuntu2), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.36.1-8ubuntu2), libssl1.1 (= 1.1.1l-1ubuntu1), libstdc++-11-dev (= 11.2.0-7ubuntu2), libstdc++6 (= 11.2.0-7ubuntu2), libsub-override-perl (= 0.09-2), libsystemd0 (= 248.3-1ubuntu8), libtasn1-6 (= 4.16.0-2build1), libtinfo6 (= 6.2+20201114-2build2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-7ubuntu2), libubsan1 (= 11.2.0-7ubuntu2), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), libuuid1 (= 2.36.1-8ubuntu2), libxml2 (= 2.9.12+dfsg-5), libxxhash0 (= 0.8.0-2build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.13.0-19.19), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.2+20201114-2build2), ncurses-bin (= 6.2+20201114-2build2), passwd (= 1:4.8.1-1ubuntu9), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), ubuntu-keyring (= 2021.03.26), util-linux (= 2.36.1-8ubuntu2), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1632932712" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libbambamc-dev_0.0.50-5_amd64.deb --------------------------------- new Debian package, version 2.0. size 54178 bytes: control archive=1776 bytes. 779 bytes, 18 lines control 2986 bytes, 39 lines md5sums Package: libbambamc-dev Source: bambamc Version: 0.0.50-5 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 284 Depends: libbambamc0 (= 0.0.50-5), pkg-config, zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/gt1/bambamc Description: Development files for reading and writing BAM (genome alignment) files The BAM Format is a binary format for storing sequence data. This is a lightweight C implementation of the read name collation code from the larger bambam C++ project to handle BAM file input and BAM file output. . This package contains the static library and header files. drwxr-xr-x root/root 0 2021-09-29 16:25 ./ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/include/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/include/bambamc/ -rw-r--r-- root/root 2098 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamAlignmentPut.h -rw-r--r-- root/root 1281 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamCollationHash.h -rw-r--r-- root/root 2025 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamCollationHashEntry.h -rw-r--r-- root/root 1876 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamCollationOutputVector.h -rw-r--r-- root/root 1760 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamCollationTempFileGenerator.h -rw-r--r-- root/root 1839 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamCollationVector.h -rw-r--r-- root/root 3373 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamCollator.h -rw-r--r-- root/root 1327 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamCollatorInterface.h -rw-r--r-- root/root 1383 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamFileDecoder.h -rw-r--r-- root/root 2146 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamFileHeader.h -rw-r--r-- root/root 1414 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamFlagBase.h -rw-r--r-- root/root 1794 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamHeaderInfo.h -rw-r--r-- root/root 6321 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamSingleAlignment.h -rw-r--r-- root/root 2128 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BamWriter.h -rw-r--r-- root/root 2960 2021-09-29 16:25 ./usr/include/bambamc/BamBam_BgzfCompressor.h -rw-r--r-- root/root 2813 2021-09-29 16:25 ./usr/include/bambamc/BamBam_CharBuffer.h -rw-r--r-- root/root 1178 2021-09-29 16:25 ./usr/include/bambamc/BamBam_Chromosome.h -rw-r--r-- root/root 979 2021-09-29 16:25 ./usr/include/bambamc/BamBam_CollatorState.h -rw-r--r-- root/root 836 2021-09-29 16:25 ./usr/include/bambamc/BamBam_Config.h -rw-r--r-- root/root 1241 2021-09-29 16:25 ./usr/include/bambamc/BamBam_FastQRead.h -rw-r--r-- root/root 1133 2021-09-29 16:25 ./usr/include/bambamc/BamBam_FormatAlignment.h -rw-r--r-- root/root 1233 2021-09-29 16:25 ./usr/include/bambamc/BamBam_FormatNumber.h -rw-r--r-- root/root 1362 2021-09-29 16:25 ./usr/include/bambamc/BamBam_GzipFileDecoder.h -rw-r--r-- root/root 1618 2021-09-29 16:25 ./usr/include/bambamc/BamBam_GzipReader.h -rw-r--r-- root/root 1623 2021-09-29 16:25 ./usr/include/bambamc/BamBam_GzipWriter.h -rw-r--r-- root/root 1096 2021-09-29 16:25 ./usr/include/bambamc/BamBam_Hash.h -rw-r--r-- root/root 1516 2021-09-29 16:25 ./usr/include/bambamc/BamBam_LineBuffer.h -rw-r--r-- root/root 1365 2021-09-29 16:25 ./usr/include/bambamc/BamBam_LineParsing.h -rw-r--r-- root/root 1468 2021-09-29 16:25 ./usr/include/bambamc/BamBam_List.h -rw-r--r-- root/root 1659 2021-09-29 16:25 ./usr/include/bambamc/BamBam_ListNode.h -rw-r--r-- root/root 1026 2021-09-29 16:25 ./usr/include/bambamc/BamBam_MergeHeapEntry.h -rw-r--r-- root/root 1440 2021-09-29 16:25 ./usr/include/bambamc/BamBam_SamBamFileDecoder.h -rw-r--r-- root/root 1753 2021-09-29 16:25 ./usr/include/bambamc/BamBam_SamFileDecoder.h -rw-r--r-- root/root 2181 2021-09-29 16:25 ./usr/include/bambamc/BamBam_SamInfo.h -rw-r--r-- root/root 942 2021-09-29 16:25 ./usr/include/bambamc/BamBam_StrDup.h -rw-r--r-- root/root 980 2021-09-29 16:25 ./usr/include/bambamc/BamBam_Unused.h drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/lib/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 190694 2021-09-29 16:25 ./usr/lib/x86_64-linux-gnu/libbambamc.a lrwxrwxrwx root/root 0 2021-09-29 16:25 ./usr/lib/x86_64-linux-gnu/libbambamc.so -> libbambamc.so.0.0.50 drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 221 2021-09-29 16:25 ./usr/lib/x86_64-linux-gnu/pkgconfig/bambamc.pc drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/share/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/share/doc/libbambamc-dev/ lrwxrwxrwx root/root 0 2021-09-29 16:25 ./usr/share/doc/libbambamc-dev/changelog.Debian.gz -> ../libbambamc0/changelog.Debian.gz -rw-r--r-- root/root 1517 2021-09-29 16:25 ./usr/share/doc/libbambamc-dev/copyright libbambamc0_0.0.50-5_amd64.deb ------------------------------ new Debian package, version 2.0. size 39338 bytes: control archive=822 bytes. 697 bytes, 16 lines control 230 bytes, 3 lines md5sums 37 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libbambamc0 Source: bambamc Version: 0.0.50-5 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 109 Depends: libc6 (>= 2.33), zlib1g (>= 1:1.2.0.2) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/gt1/bambamc Description: Runtime library for reading and writing BAM (genome alignment) files The BAM Format is a binary format for storing sequence data. This is a lightweight C implementation of the read name collation code from the larger bambam C++ project to handle BAM file input and BAM file output. drwxr-xr-x root/root 0 2021-09-29 16:25 ./ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/lib/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2021-09-29 16:25 ./usr/lib/x86_64-linux-gnu/libbambamc.so.0 -> libbambamc.so.0.0.50 -rw-r--r-- root/root 96720 2021-09-29 16:25 ./usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50 drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/share/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-09-29 16:25 ./usr/share/doc/libbambamc0/ -rw-r--r-- root/root 689 2021-09-29 16:25 ./usr/share/doc/libbambamc0/changelog.Debian.gz -rw-r--r-- root/root 1517 2021-09-29 16:25 ./usr/share/doc/libbambamc0/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 21 Distribution: jammy-proposed Host Architecture: amd64 Install-Time: 5 Job: bambamc_0.0.50-5.dsc Machine Architecture: amd64 Package: bambamc Package-Time: 28 Source-Version: 0.0.50-5 Space: n/a Status: successful Version: 0.0.50-5 -------------------------------------------------------------------------------- Finished at 2021-10-18T22:28:59Z Build needed 00:00:28, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22292495 Scanning for processes to kill in build PACKAGEBUILD-22292495