https://launchpad.net/ubuntu/+source/bamtools/2.5.1+dfsg-3/+build/14827318 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-011 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:04 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 4 May 20:00:31 ntpdate[1822]: adjust time server 10.211.37.1 offset 0.015147 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14827318 /home/buildd/filecache-default/b7d07d6b68ae68badf26a018a3a0291d50e41e42 Creating target for build PACKAGEBUILD-14827318 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14827318 Starting target for build PACKAGEBUILD-14827318 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14827318 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14827318 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14827318 Updating target for build PACKAGEBUILD-14827318 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 Packages [1018 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe amd64 Packages [8565 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4941 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 Packages [18.5 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [10.2 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe amd64 Packages [43.6 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [26.7 kB] Fetched 15.6 MB in 6s (2506 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: base-files bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libasan4 libatomic1 libbinutils libblkid1 libcc1-0 libcilkrts5 libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgomp1 libitm1 liblsan0 libmount1 libmpx2 libncurses5 libncursesw5 libprocps6 libquadmath0 libreadline7 libsmartcols1 libstdc++-7-dev libstdc++6 libtinfo5 libtsan0 libubsan0 libuuid1 mount ncurses-base ncurses-bin pinentry-curses procps readline-common util-linux 52 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After this operation, 1218 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main amd64 base-files amd64 10.1ubuntu3 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo6 amd64 6.1+20180210-2ubuntu2 [83.8 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 bash amd64 4.4.18-2ubuntu2 [614 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 bsdutils amd64 1:2.31.1-0.4ubuntu4 [60.1 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 dpkg amd64 1.19.0.5ubuntu3 [1140 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-bin amd64 6.1+20180210-2ubuntu2 [163 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw6 amd64 6.1+20180210-2ubuntu2 [130 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libuuid1 amd64 2.31.1-0.4ubuntu4 [19.9 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libblkid1 amd64 2.31.1-0.4ubuntu4 [124 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libfdisk1 amd64 2.31.1-0.4ubuntu4 [164 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libmount1 amd64 2.31.1-0.4ubuntu4 [136 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libsmartcols1 amd64 2.31.1-0.4ubuntu4 [83.5 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 fdisk amd64 2.31.1-0.4ubuntu4 [107 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 util-linux amd64 2.31.1-0.4ubuntu4 [902 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 mount amd64 2.31.1-0.4ubuntu4 [106 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 libquadmath0 amd64 8.1.0-1ubuntu2 [133 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libitm1 amd64 8.1.0-1ubuntu2 [28.0 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-8-base amd64 8.1.0-1ubuntu2 [18.1 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main amd64 libstdc++6 amd64 8.1.0-1ubuntu2 [399 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmpx2 amd64 8.1.0-1ubuntu2 [11.7 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblsan0 amd64 8.1.0-1ubuntu2 [132 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtsan0 amd64 8.1.0-1ubuntu2 [288 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcc1-0 amd64 8.1.0-1ubuntu2 [39.5 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 libatomic1 amd64 8.1.0-1ubuntu2 [9060 B] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgomp1 amd64 8.1.0-1ubuntu2 [76.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcc1 amd64 1:8.1.0-1ubuntu2 [40.7 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncursesw5 amd64 6.1+20180210-2ubuntu2 [117 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses5 amd64 6.1+20180210-2ubuntu2 [95.2 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtinfo5 amd64 6.1+20180210-2ubuntu2 [79.3 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main amd64 libprocps6 amd64 2:3.3.12-3ubuntu2 [31.5 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main amd64 libncurses6 amd64 6.1+20180210-2ubuntu2 [100 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main amd64 procps amd64 2:3.3.12-3ubuntu2 [225 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 readline-common all 7.0-4ubuntu1 [52.3 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libreadline7 amd64 7.0-4ubuntu1 [123 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-x86-64-linux-gnu amd64 2.30-17ubuntu1 [1855 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils-common amd64 2.30-17ubuntu1 [193 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main amd64 binutils amd64 2.30-17ubuntu1 [3392 B] Get:39 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbinutils amd64 2.30-17ubuntu1 [502 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main amd64 libasan4 amd64 7.3.0-17ubuntu1 [358 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main amd64 libubsan0 amd64 7.3.0-17ubuntu1 [126 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcilkrts5 amd64 7.3.0-17ubuntu1 [42.4 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main amd64 g++-7 amd64 7.3.0-17ubuntu1 [7566 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-7 amd64 7.3.0-17ubuntu1 [7445 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 libstdc++-7-dev amd64 7.3.0-17ubuntu1 [1463 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgcc-7-dev amd64 7.3.0-17ubuntu1 [2372 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 cpp-7 amd64 7.3.0-17ubuntu1 [6731 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 gcc-7-base amd64 7.3.0-17ubuntu1 [18.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 cpp amd64 4:7.3.0-3ubuntu3 [27.5 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 gcc amd64 4:7.3.0-3ubuntu3 [5216 B] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 g++ amd64 4:7.3.0-3ubuntu3 [1592 B] Get:52 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 build-essential amd64 12.5ubuntu2 [4732 B] Get:55 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 pinentry-curses amd64 1.1.0-1build1 [35.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.5 MB in 2s (21.9 MB/s) (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu3_amd64.deb ... Unpacking base-files (10.1ubuntu3) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:amd64. (Reading database ... 12637 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_amd64.deb ... Unpacking libtinfo6:amd64 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:amd64 (6.1+20180210-2ubuntu2) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_amd64.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_amd64.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_amd64.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12646 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-2ubuntu2_amd64.deb ... Unpacking ncurses-bin (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-2ubuntu2) ... Selecting previously unselected package libncursesw6:amd64. 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Setting up libtsan0:amd64 (8.1.0-1ubuntu2) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up libprocps6:amd64 (2:3.3.12-3ubuntu2) ... Setting up liblsan0:amd64 (8.1.0-1ubuntu2) ... Setting up gcc-7-base:amd64 (7.3.0-17ubuntu1) ... Setting up binutils-common:amd64 (2.30-17ubuntu1) ... Setting up libmpx2:amd64 (8.1.0-1ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libncurses6:amd64 (6.1+20180210-2ubuntu2) ... Setting up libitm1:amd64 (8.1.0-1ubuntu2) ... Setting up libasan4:amd64 (7.3.0-17ubuntu1) ... Setting up libbinutils:amd64 (2.30-17ubuntu1) ... Setting up libcilkrts5:amd64 (7.3.0-17ubuntu1) ... Setting up libubsan0:amd64 (7.3.0-17ubuntu1) ... Setting up libgcc-7-dev:amd64 (7.3.0-17ubuntu1) ... Setting up cpp-7 (7.3.0-17ubuntu1) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:amd64 (7.3.0-17ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils-x86-64-linux-gnu (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up binutils (2.30-17ubuntu1) ... Setting up gcc-7 (7.3.0-17ubuntu1) ... Setting up g++-7 (7.3.0-17ubuntu1) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14827318 amd64 cosmic-proposed -c chroot:build-PACKAGEBUILD-14827318 --arch=amd64 --dist=cosmic-proposed --nolog -A bamtools_2.5.1+dfsg-3.dsc Initiating build PACKAGEBUILD-14827318 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:04 UTC 2018 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-011.buildd +==============================================================================+ | bamtools 2.5.1+dfsg-3 (amd64) 04 May 2018 20:01 | +==============================================================================+ Package: bamtools Version: 2.5.1+dfsg-3 Source Version: 2.5.1+dfsg-3 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/bamtools-OYQP86/bamtools-2.5.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bamtools-OYQP86' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14827318/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bamtools_2.5.1+dfsg-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Aku7gh/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Aku7gh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Aku7gh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Aku7gh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Aku7gh/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Aku7gh/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (41.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Aku7gh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12661 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen Filtered Build-Depends: debhelper (>= 11), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<>/resolver-sf1Lg1/apt_archive/sbuild-build-depends-bamtools-dummy.deb'. Ign:1 copy:/<>/resolver-sf1Lg1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-sf1Lg1/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-sf1Lg1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-sf1Lg1/apt_archive ./ Sources [255 B] Get:5 copy:/<>/resolver-sf1Lg1/apt_archive ./ Packages [575 B] Fetched 2949 B in 0s (40.2 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install bamtools build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbsd0 libclang1-6.0 libcroco3 libcurl4 libedit2 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu60 libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libllvm6.0 liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtimedate-perl libtool libuv1 libwind0-heimdal libxapian30 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make dwz doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbsd0 libclang1-6.0 libcroco3 libcurl4 libedit2 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu60 libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libllvm6.0 liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtimedate-perl libtool libuv1 libwind0-heimdal libxapian30 libxml2 m4 man-db po-debconf sbuild-build-depends-bamtools-dummy zlib1g-dev 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 50.4 MB of archives. After this operation, 204 MB of additional disk space will be used. Get:1 copy:/<>/resolver-sf1Lg1/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblocale-gettext-perl amd64 1.07-3build2 [16.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main amd64 libbsd0 amd64 0.8.7-1 [41.5 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main amd64 bsdmainutils amd64 11.1.2ubuntu2 [181 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main amd64 groff-base amd64 1.22.3-10 [1153 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main amd64 man-db amd64 2.8.3-2 [1019 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main amd64 liblzo2-2 amd64 2.08-1.2 [48.7 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic-mgc amd64 1:5.32-2 [184 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main amd64 libmagic1 amd64 1:5.32-2 [68.5 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main amd64 file amd64 1:5.32-2 [22.1 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main amd64 libexpat1 amd64 2.2.5-3 [80.2 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main amd64 libglib2.0-0 amd64 2.56.1-2ubuntu1 [1167 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main amd64 libicu60 amd64 60.2-3ubuntu3 [8054 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1ubuntu1 [662 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext-base amd64 0.19.8.1-6build1 [50.0 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main amd64 libedit2 amd64 3.1-20170329-1build1 [76.7 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkrb5support0 amd64 1.16-2build1 [31.1 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main amd64 libk5crypto3 amd64 1.16-2build1 [85.6 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu2 [8720 B] Get:21 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkrb5-3 amd64 1.16-2build1 [279 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgssapi-krb5-2 amd64 1.16-2build1 [122 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main amd64 libpsl5 amd64 0.19.1-5build1 [41.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsigsegv2 amd64 2.12-1 [14.7 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main amd64 autoconf all 2.69-11 [322 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main amd64 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main amd64 autopoint all 0.19.8.1-6build1 [412 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 cmake-data all 3.11.1-1ubuntu1 [1367 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main amd64 libarchive13 amd64 3.2.2-3.1 [289 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-1 [41.3 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-1 [175 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-1 [29.3 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-1 [85.9 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-1 [47.8 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-1 [107 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-1 [206 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-1 [14.8 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-1 [96.5 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsasl2-modules-db amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [14.8 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main amd64 libsasl2-2 amd64 2.1.27~101-g0780600+dfsg-3ubuntu2 [49.2 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libldap-common all 2.4.46+dfsg-2ubuntu1 [16.8 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 libldap-2.4-2 amd64 2.4.46+dfsg-2ubuntu1 [155 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main amd64 libnghttp2-14 amd64 1.30.0-1ubuntu1 [77.8 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-1 [54.2 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcurl4 amd64 7.58.0-2ubuntu3 [214 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjsoncpp1 amd64 1.7.4-3 [73.6 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main amd64 librhash0 amd64 1.3.6-2 [78.1 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main amd64 libuv1 amd64 1.18.0-3 [64.4 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main amd64 cmake amd64 3.11.1-1ubuntu1 [3174 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/universe amd64 d-shlibs all 0.82 [9880 B] Get:53 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtool all 2.4.6-2 [194 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-autoreconf all 17 [15.8 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main amd64 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main amd64 libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main amd64 dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:59 http://ftpmaster.internal/ubuntu cosmic/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main amd64 gettext amd64 0.19.8.1-6build1 [895 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main amd64 po-debconf all 1.0.20 [232 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main amd64 debhelper all 11.2.1ubuntu1 [906 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main amd64 libllvm6.0 amd64 1:6.0-1ubuntu3 [14.5 MB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main amd64 libclang1-6.0 amd64 1:6.0-1ubuntu3 [7064 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main amd64 libxapian30 amd64 1.4.5-1 [629 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main amd64 doxygen amd64 1.8.13-10 [3880 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/universe amd64 help2man amd64 1.47.6 [162 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main amd64 libjsoncpp-dev amd64 1.7.4-3 [85.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.4 MB in 3s (17.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12661 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3build2_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3build2) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.8.7-1_amd64.deb ... Unpacking libbsd0:amd64 (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_amd64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.3-10_amd64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.3-2_amd64.deb ... Unpacking man-db (2.8.3-2) ... 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No schema files found: doing nothing. Setting up libsasl2-modules-db:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:amd64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libclang1-6.0:amd64 (1:6.0-1ubuntu3) ... Setting up d-shlibs (0.82) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up cmake-data (3.11.1-1ubuntu1) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up libroken18-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:amd64 (0.8.7-1) ... Setting up libkrb5support0:amd64 (1.16-2build1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:amd64 (1:5.32-2) ... Setting up librhash0:amd64 (1.3.6-2) ... Setting up libcroco3:amd64 (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-3build2) ... Setting up libkeyutils1:amd64 (1.5.9-9.2ubuntu2) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6build1) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libjsoncpp-dev:amd64 (1.7.4-3) ... Setting up libk5crypto3:amd64 (1.16-2build1) ... Setting up libwind0-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libarchive13:amd64 (3.2.2-3.1) ... Setting up libasn1-8-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libhcrypto4-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up doxygen (1.8.13-10) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up libhx509-5-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.6) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:amd64 (1.16-2build1) ... Setting up libkrb5-26-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libheimntlm0-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libgssapi-krb5-2:amd64 (1.16-2build1) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.46+dfsg-2ubuntu1) ... Setting up libcurl4:amd64 (7.58.0-2ubuntu3) ... Setting up cmake (3.11.1-1ubuntu1) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up dh-autoreconf (17) ... Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-122-generic amd64 (x86_64) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-17ubuntu1 gcc-7_7.3.0-17ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu3 base-passwd_3.5.44 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-x86-64-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 cmake_3.11.1-1ubuntu1 cmake-data_3.11.1-1ubuntu1 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-17ubuntu1 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 doxygen_1.8.13-10 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-17ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-17ubuntu1 gcc-7-base_7.3.0-17ubuntu1 gcc-8-base_8.1.0-1ubuntu2 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 help2man_1.47.6 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-17ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-1 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu2 libcilkrts5_7.3.0-17ubuntu1 libclang1-6.0_1:6.0-1ubuntu3 libcom-err2_1.44.1-1 libcomerr2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libcurl4_7.58.0-2ubuntu3 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20170329-1build1 libexpat1_2.2.5-3 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-17ubuntu1 libgcc1_1:8.1.0-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu2 libgpg-error0_1.27-6 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-1ubuntu2 libjson-c3_0.12.1-1.3 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu2 libkmod2_24-1ubuntu3 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 libldap-2.4-2_2.4.46+dfsg-2ubuntu1 libldap-common_2.4.46+dfsg-2ubuntu1 libllvm6.0_1:6.0-1ubuntu3 liblocale-gettext-perl_1.07-3build2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.1.0-1ubuntu2 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-1ubuntu2 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnghttp2-14_1.30.0-1ubuntu1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpsl5_0.19.1-5build1 libquadmath0_8.1.0-1ubuntu2 libreadline7_7.0-4ubuntu1 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2 libtsan0_8.1.0-1ubuntu2 libubsan0_7.3.0-17ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libuuid1_2.31.1-0.4ubuntu4 libuv1_1.18.0-3 libwind0-heimdal_7.5.0+dfsg-1 libxapian30_1.4.5-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-4ubuntu1 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Apr 5 10:00:14 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bamtools_2.5.1+dfsg-3.dsc dpkg-source: info: extracting bamtools in bamtools-2.5.1+dfsg dpkg-source: info: unpacking bamtools_2.5.1+dfsg.orig.tar.gz dpkg-source: info: unpacking bamtools_2.5.1+dfsg-3.debian.tar.xz dpkg-source: info: applying doxygen-tweak dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0006-Doxygen-reproducibility dpkg-source: info: applying 0008_Cmake_Test.patch dpkg-source: info: applying spelling Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14827318 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14827318 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14827318 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build bamtools-2.5.1+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' dh_auto_configure --arch -- -DBUILD_SHARED_LIBS=on cd obj-x86_64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DBUILD_SHARED_LIBS=on -- The CXX compiler identification is GNU 7.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Checking for one of the modules 'jsoncpp>=1' Did NOT find system JsonCpp, instead using bundled version -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' doxygen -u docs/Doxyfile warning: Tag `SYMBOL_CACHE_SIZE' at line 300 of file `docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag `SHOW_DIRECTORIES' at line 500 of file `docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag `HTML_ALIGN_MEMBERS' at line 862 of file `docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag `USE_INLINE_TREES' at line 1032 of file `docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag `XML_SCHEMA' at line 1244 of file `docs/Doxyfile' has become obsolete. This tag has been removed. warning: Tag `XML_DTD' at line 1250 of file `docs/Doxyfile' has become obsolete. This tag has been removed. Configuration file `docs/Doxyfile' updated. doxygen docs/Doxyfile Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/bam Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/index Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/io Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/sam Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/utils Searching INPUT for files to process... Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/algorithms Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/bam Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/index Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/io Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/sam Searching for files in directory /<>/bamtools-2.5.1+dfsg/src/api/internal/utils Reading and parsing tag files Parsing files Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/algorithms/Sort.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/algorithms/Sort.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/api_global.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/api_global.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamAlgorithms.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamAlgorithms.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamAux.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamAux.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamConstants.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamConstants.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamIndex.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamIndex.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamReader.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamReader.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamReader.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamReader.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamWriter.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/BamWriter.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/IBamIODevice.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/IBamIODevice.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp:25: warning: Documentation for undefined enum `MergeOrder' found. /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:187: warning: documented symbol `bool BamTools::AddTag' was not declared or defined. /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:303: warning: documented symbol `template< typename T > bool BamTools::AddTag' was not declared or defined. /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:368: warning: documented symbol `template< typename T > bool BamTools::EditTag' was not declared or defined. /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:394: warning: documented symbol `template< typename T > bool BamTools::EditTag' was not declared or defined. /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:417: warning: documented symbol `template< typename T > bool BamTools::GetTag' was not declared or defined. /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.h:542: warning: documented symbol `template< typename T > bool BamTools::GetTag' was not declared or defined. /<>/bamtools-2.5.1+dfsg/src/api/SamConstants.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamConstants.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamHeader.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamHeader.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamProgram.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamProgram.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamSequence.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamSequence.h... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp... Preprocessing /<>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.h... Parsing file /<>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file api_global.h... Generating code for file BamAlgorithms.h... Generating code for file BamAlignment.h... Generating code for file BamAux.h... Generating code for file BamConstants.h... Generating code for file BamIndex.h... Generating code for file BamMultiReader.h... Generating code for file BamReader.h... Generating code for file BamWriter.h... Generating code for file IBamIODevice.h... Generating code for file SamConstants.h... Generating code for file SamHeader.h... Generating code for file SamProgram.h... Generating code for file SamProgramChain.h... Generating code for file SamReadGroup.h... Generating code for file SamReadGroupDictionary.h... Generating code for file SamSequence.h... Generating code for file SamSequenceDictionary.h... Generating code for file Sort.h... Generating file documentation... Generating docs for file api_global.h... Generating docs for file BamAlgorithms.h... Generating docs for file BamAlignment.cpp... Generating docs for file BamAlignment.h... Generating docs for file BamAux.h... Generating docs for file BamConstants.h... Generating docs for file BamIndex.h... Generating docs for file BamMultiReader.cpp... Generating docs for file BamMultiReader.h... Generating docs for file BamReader.cpp... Generating docs for file BamReader.h... Generating docs for file BamWriter.cpp... Generating docs for file BamWriter.h... Generating docs for file IBamIODevice.h... Generating docs for file SamConstants.h... Generating docs for file SamHeader.cpp... Generating docs for file SamHeader.h... Generating docs for file SamProgram.cpp... Generating docs for file SamProgram.h... Generating docs for file SamProgramChain.cpp... Generating docs for file SamProgramChain.h... Generating docs for file SamReadGroup.cpp... Generating docs for file SamReadGroup.h... Generating docs for file SamReadGroupDictionary.cpp... Generating docs for file SamReadGroupDictionary.h... Generating docs for file SamSequence.cpp... Generating docs for file SamSequence.h... Generating docs for file SamSequenceDictionary.cpp... Generating docs for file SamSequenceDictionary.h... Generating docs for file Sort.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace BamTools Generating docs for compound BamTools::BamAlignment... Generating docs for compound BamTools::BamIndex... Generating docs for compound BamTools::BamMultiReader... Generating docs for compound BamTools::BamReader... Generating docs for compound BamTools::BamRegion... Generating docs for compound BamTools::BamWriter... Generating docs for compound BamTools::CigarOp... Generating docs for compound BamTools::CustomHeaderTag... Generating docs for compound BamTools::IBamIODevice... Generating docs for compound BamTools::RefData... Generating docs for compound BamTools::SamHeader... Generating docs for compound BamTools::SamProgram... Generating docs for compound BamTools::SamProgramChain... Generating docs for compound BamTools::SamReadGroup... Generating docs for compound BamTools::SamReadGroupDictionary... Generating docs for compound BamTools::SamSequence... Generating docs for compound BamTools::SamSequenceDictionary... Generating docs for namespace BamTools::Algorithms Generating docs for compound BamTools::Algorithms::Sort... Generating docs for nested compound BamTools::Algorithms::Sort::ByName... Generating docs for nested compound BamTools::Algorithms::Sort::ByPosition... Generating docs for nested compound BamTools::Algorithms::Sort::ByTag... Generating docs for nested compound BamTools::Algorithms::Sort::Unsorted... Generating docs for namespace BamTools::Constants Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 1188/65536 hits=6495 misses=1216 finished... mv docs/Doxyfile.bak docs/Doxyfile make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' dh_auto_build -Nlibbamtools-doc cd obj-x86_64-linux-gnu && make -j4 -Oline "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/bamtools-2.5.1+dfsg -B/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 all make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/api /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 5%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamReader.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 15%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 32%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 35%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 49%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 66%] Linking CXX shared library libbamtools.so make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.1 -o libbamtools.so.2.5.1 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.1 libbamtools.so.2.5.1 libbamtools.so make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 66%] Built target BamTools make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/utils /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools-utils make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_pileup_engine.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_utilities.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_options.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 74%] Linking CXX static library libbamtools-utils.a make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1 /usr/bin/ar qc libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o /usr/bin/ranlib libbamtools-utils.a make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target BamTools-utils make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= Scanning dependencies of target bamtools_cmd make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 77%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_coverage.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_count.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_convert.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_index.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_header.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_merge.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_random.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_revert.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_filter.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_resolve.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_sort.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_stats.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_split.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [100%] Linking CXX executable bamtools make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o bamtools -Wl,-rpath,/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api: ../utils/libbamtools-utils.a -ljsoncpp ../api/libbamtools.so.2.5.1 make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' cd obj-* && ln -s src/toolkit/ bin dh_auto_test --arch cd obj-x86_64-linux-gnu && make -j4 -Oline test ARGS\+=-j4 make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' Running tests... make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu Start 1: bamtools_help Start 2: bamtools_stats 1/2 Test #1: bamtools_help .................... Passed 0.04 sec 2/2 Test #2: bamtools_stats ................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.05 sec make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j4 -Oline install DESTDIR=/<>/bamtools-2.5.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/bamtools-2.5.1+dfsg -B/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 all make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/api /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'. make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 66%] Built target BamTools make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/utils /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'. make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target BamTools-utils make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' cd /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'. make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 preinstall make[2]: Nothing to be done for 'preinstall'. make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' Install the project... make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/bamtools-1.pc -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1 -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libbamtools.so -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools -- Set runtime path of "/<>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools" to "" make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install-indep make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' dh_install --indep rm -f debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js ln -s /usr/share/javascript/jquery/jquery.js debian/libbamtools-doc/usr/share/doc/libbamtools-dev/html/jquery.js make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' dh_install -Nlibbamtools-doc dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing bamtools (in debian/bamtools); do_strip: , oemstrip: pkgstriptranslations: processing libbamtools-dev (in debian/libbamtools-dev); do_strip: , oemstrip: pkgstriptranslations: processing libbamtools2.5.1-dbgsym (in debian/.debhelper/libbamtools2.5.1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bamtools/DEBIAN/control, package bamtools, directory debian/bamtools Searching for duplicated docs in dependency libbamtools2.5.1... symlinking changelog.Debian.gz in bamtools to file in libbamtools2.5.1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package bamtools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bamtools' in '../bamtools_2.5.1+dfsg-3_amd64.deb'. INFO: pkgstriptranslations version 138 pkgstriptranslations: processing bamtools-dbgsym (in debian/.debhelper/bamtools/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libbamtools2.5.1/dbgsym-root/DEBIAN/control, package libbamtools2.5.1-dbgsym, directory debian/.debhelper/libbamtools2.5.1/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbamtools2.5.1-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbamtools2.5.1-dbgsym' in 'debian/.debhelper/scratch-space/build-libbamtools2.5.1/libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/bamtools/dbgsym-root/DEBIAN/control, package bamtools-dbgsym, directory debian/.debhelper/bamtools/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package bamtools-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bamtools-dbgsym' in 'debian/.debhelper/scratch-space/build-bamtools/bamtools-dbgsym_2.5.1+dfsg-3_amd64.deb'. Renaming libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_amd64.deb to libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_amd64.ddeb Renaming bamtools-dbgsym_2.5.1+dfsg-3_amd64.deb to bamtools-dbgsym_2.5.1+dfsg-3_amd64.ddeb INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libbamtools-doc (in debian/libbamtools-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbamtools-doc/DEBIAN/control, package libbamtools-doc, directory debian/libbamtools-doc INFO: pkgstripfiles: waiting for lock (libbamtools-doc) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libbamtools-doc) ... pkgstripfiles: processing control file: debian/libbamtools-dev/DEBIAN/control, package libbamtools-dev, directory debian/libbamtools-dev Searching for duplicated docs in dependency libbamtools2.5.1... symlinking changelog.Debian.gz in libbamtools-dev to file in libbamtools2.5.1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbamtools-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.1+dfsg-3_amd64.deb'. INFO: pkgstripfiles: waiting for lock (libbamtools-doc) ... INFO: pkgstripfiles: waiting for lock (libbamtools-doc) ... INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libbamtools2.5.1 (in debian/libbamtools2.5.1); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (libbamtools-doc) ... INFO: pkgstripfiles: waiting for lock (libbamtools-doc) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbamtools2.5.1/DEBIAN/control, package libbamtools2.5.1, directory debian/libbamtools2.5.1 INFO: pkgstripfiles: waiting for lock (libbamtools-doc) ... pkgstripfiles: Truncating usr/share/doc/libbamtools2.5.1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbamtools2.5.1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbamtools2.5.1' in '../libbamtools2.5.1_2.5.1+dfsg-3_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/libbamtools-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package libbamtools-doc (to save build time) dpkg-deb: building package 'libbamtools-doc' in '../libbamtools-doc_2.5.1+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../bamtools_2.5.1+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build bamtools-2.5.1+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180504-2005 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bamtools_2.5.1+dfsg-3_amd64.changes: ------------------------------------ Format: 1.8 Date: Thu, 05 Apr 2018 11:54:57 +0200 Source: bamtools Binary: bamtools libbamtools-dev libbamtools2.5.1 libbamtools-doc Architecture: amd64 all Version: 2.5.1+dfsg-3 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools-doc - docs for dynamic library for manipulating BAM (genome alignment) libbamtools2.5.1 - dynamic library for manipulating BAM (genome alignment) files Closes: 894886 Changes: bamtools (2.5.1+dfsg-3) unstable; urgency=medium . * Point Vcs fields to salsa.debian.org * Use Breaks+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) since the includes were formerly in lib package Closes: #894886 Checksums-Sha1: ed3900c30daf6a7ea35bdd47342314a5f6791357 2491828 bamtools-dbgsym_2.5.1+dfsg-3_amd64.ddeb e331b4cbbe22e1a9cbd13a846c2539c5f3d5e708 8348 bamtools_2.5.1+dfsg-3_amd64.buildinfo 2e749c256064beb12f368512af95b465c2b709b2 168680 bamtools_2.5.1+dfsg-3_amd64.deb 7f9a9e51e406e3e1a185bc38c3b5e64be769b464 19824 libbamtools-dev_2.5.1+dfsg-3_amd64.deb 613e391df97124a2d259a4a99e451a9488836b4c 156712 libbamtools-doc_2.5.1+dfsg-3_all.deb 0fb379ced3f0dd5ee82b75674fa1774967dba498 2099868 libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_amd64.ddeb 34006381f8e0019d15aef4948cc9c8017b826680 150592 libbamtools2.5.1_2.5.1+dfsg-3_amd64.deb Checksums-Sha256: 32ffd51c5f587d5a11ce9308405f7ada0985734f04a7027dff5ab087884bba82 2491828 bamtools-dbgsym_2.5.1+dfsg-3_amd64.ddeb 6f8cabbe5d2ee7846adcf90ec19ef6ad14e117be72bc7160ebe0bb3ad54d82a0 8348 bamtools_2.5.1+dfsg-3_amd64.buildinfo 58cf489b648b9f40a6b214f6a1cf321366d56820cd5de50d0391b27fbc591159 168680 bamtools_2.5.1+dfsg-3_amd64.deb 91838cc1a6f422ad350a710e1f280c671d6010641f3c34018281693e6b2f8023 19824 libbamtools-dev_2.5.1+dfsg-3_amd64.deb 89dd6dcb0c2256a9cbab873f9f3a9340724628e88ba5fad7246d52648571cc71 156712 libbamtools-doc_2.5.1+dfsg-3_all.deb e1e000065148b9a56c14d1cdb22e2a723f81d8e02608c7dd6777cf0be09e06c4 2099868 libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_amd64.ddeb 5630e5bc3896f5d33c98ba98ec7af639d2ac7fe3f060577fc7ef04249fe79638 150592 libbamtools2.5.1_2.5.1+dfsg-3_amd64.deb Files: 7e6a32fc0f1ac2851a1fd14247ba07f3 2491828 debug optional bamtools-dbgsym_2.5.1+dfsg-3_amd64.ddeb 7a299ad889d750dbfef8168da198fe00 8348 science optional bamtools_2.5.1+dfsg-3_amd64.buildinfo 0b198f2f120041457fb6708485fc01a3 168680 science optional bamtools_2.5.1+dfsg-3_amd64.deb cb8425b2e4a98e60c070a09acab8a836 19824 libdevel optional libbamtools-dev_2.5.1+dfsg-3_amd64.deb c9e49739052054159f77033e5459856d 156712 doc optional libbamtools-doc_2.5.1+dfsg-3_all.deb 9265781eab68587a5d03262c9574e425 2099868 debug optional libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_amd64.ddeb a185c9ebdfa9fd27ab722d9cec819cab 150592 libs optional libbamtools2.5.1_2.5.1+dfsg-3_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bamtools_2.5.1+dfsg-3_amd64.deb ------------------------------- new debian package, version 2.0. size 168680 bytes: control archive=1516 bytes. 1871 bytes, 38 lines control 545 bytes, 8 lines md5sums Package: bamtools Version: 2.5.1+dfsg-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 560 Depends: libbamtools2.5.1, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libjsoncpp1 (>= 1.7.4), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit. . Available bamtools commands: convert Converts between BAM and a number of other formats count Prints number of alignments in BAM file(s) coverage Prints coverage statistics from the input BAM file filter Filters BAM file(s) by user-specified criteria header Prints BAM header information index Generates index for BAM file merge Merge multiple BAM files into single file random Select random alignments from existing BAM file(s), intended more as a testing tool. resolve Resolves paired-end reads (marking the IsProperPair flag as needed) revert Removes duplicate marks and restores original base qualities sort Sorts the BAM file according to some criteria split Splits a BAM file on user-specified property, creating a new BAM output file for each value found stats Prints some basic statistics from input BAM file(s) drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/bin/ -rwxr-xr-x root/root 551088 2018-04-05 09:54 ./usr/bin/bamtools drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/bamtools/ -rw-r--r-- root/root 262 2018-04-05 09:54 ./usr/share/doc/bamtools/README.test lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/share/doc/bamtools/changelog.Debian.gz -> ../libbamtools2.5.1/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/bamtools/copyright -rw-r--r-- root/root 352 2018-04-05 09:54 ./usr/share/doc/bamtools/filter_script -rw-r--r-- root/root 970 2018-04-05 09:54 ./usr/share/doc/bamtools/run-unit-test -rw-r--r-- root/root 375 2018-04-05 09:54 ./usr/share/doc/bamtools/sam_spec_example.bam drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 71 2018-04-05 09:54 ./usr/share/lintian/overrides/bamtools drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/man/man1/ -rw-r--r-- root/root 792 2018-04-05 09:54 ./usr/share/man/man1/bamtools.1.gz libbamtools-dev_2.5.1+dfsg-3_amd64.deb -------------------------------------- new debian package, version 2.0. size 19824 bytes: control archive=1520 bytes. 1073 bytes, 26 lines control 1645 bytes, 22 lines md5sums Package: libbamtools-dev Source: bamtools Version: 2.5.1+dfsg-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 130 Depends: libbamtools2.5.1 (= 2.5.1+dfsg-3) Suggests: libbamtools-doc (= 2.5.1+dfsg-3) Breaks: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . 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It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . 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-rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/libbamtools-doc/copyright libbamtools2.5.1_2.5.1+dfsg-3_amd64.deb --------------------------------------- new debian package, version 2.0. size 150592 bytes: control archive=1100 bytes. 982 bytes, 23 lines control 240 bytes, 3 lines md5sums 35 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libbamtools2.5.1 Source: bamtools Version: 2.5.1+dfsg-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 493 Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: dynamic library for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the runtime library. drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 489496 2018-04-05 09:54 ./usr/lib/x86_64-linux-gnu/libbamtools.so.2.5.1 drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/ -rw-r--r-- root/root 1707 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 99928 Build-Time: 172 Distribution: cosmic-proposed Host Architecture: amd64 Install-Time: 51 Job: bamtools_2.5.1+dfsg-3.dsc Machine Architecture: amd64 Package: bamtools Package-Time: 227 Source-Version: 2.5.1+dfsg-3 Space: 99928 Status: successful Version: 2.5.1+dfsg-3 -------------------------------------------------------------------------------- Finished at 20180504-2005 Build needed 00:03:47, 99928k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14827318 Scanning for processes to kill in build PACKAGEBUILD-14827318 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14827318 Stopping target for build PACKAGEBUILD-14827318 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=amd64 PACKAGEBUILD-14827318 Removing build PACKAGEBUILD-14827318