https://launchpad.net/ubuntu/+source/bamtools/2.5.1+dfsg-3/+build/14827320 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-038 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:58 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 4 May 21:20:01 ntpdate[1818]: adjust time server 10.211.37.1 offset -0.113556 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14827320 /home/buildd/filecache-default/fc6c56f66744d62233b3c844f67cb7d83d839bbc Creating target for build PACKAGEBUILD-14827320 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14827320 Starting target for build PACKAGEBUILD-14827320 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14827320 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14827320 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14827320 Updating target for build PACKAGEBUILD-14827320 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf Packages [967 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe armhf Packages [8264 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4941 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf Packages [17.4 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [11.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe armhf Packages [37.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [32.1 kB] Fetched 15.3 MB in 6s (2548 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: base-files bash binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential cpp cpp-7 dpkg dpkg-dev fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libasan4 libatomic1 libbinutils libblkid1 libcc1-0 libcilkrts5 libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgomp1 libmount1 libncurses5 libncursesw5 libprocps6 libreadline7 libsmartcols1 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libuuid1 mount ncurses-base ncurses-bin pinentry-curses procps readline-common util-linux 47 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 28.4 MB of archives. After this operation, 903 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main armhf base-files armhf 10.1ubuntu3 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo6 armhf 6.1+20180210-2ubuntu2 [71.0 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf bash armhf 4.4.18-2ubuntu2 [552 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf bsdutils armhf 1:2.31.1-0.4ubuntu4 [55.3 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf dpkg armhf 1.19.0.5ubuntu3 [1096 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-bin armhf 6.1+20180210-2ubuntu2 [155 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw6 armhf 6.1+20180210-2ubuntu2 [104 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libuuid1 armhf 2.31.1-0.4ubuntu4 [19.2 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libblkid1 armhf 2.31.1-0.4ubuntu4 [112 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libfdisk1 armhf 2.31.1-0.4ubuntu4 [151 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libmount1 armhf 2.31.1-0.4ubuntu4 [122 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libsmartcols1 armhf 2.31.1-0.4ubuntu4 [74.3 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf fdisk armhf 2.31.1-0.4ubuntu4 [97.8 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf util-linux armhf 2.31.1-0.4ubuntu4 [845 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main armhf ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf mount armhf 2.31.1-0.4ubuntu4 [99.8 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main armhf libgomp1 armhf 8.1.0-1ubuntu2 [66.6 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-8-base armhf 8.1.0-1ubuntu2 [18.1 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main armhf libstdc++6 armhf 8.1.0-1ubuntu2 [349 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main armhf libcc1-0 armhf 8.1.0-1ubuntu2 [32.7 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main armhf libatomic1 armhf 8.1.0-1ubuntu2 [7068 B] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcc1 armhf 1:8.1.0-1ubuntu2 [37.1 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses5 armhf 6.1+20180210-2ubuntu2 [74.8 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main armhf libncursesw5 armhf 6.1+20180210-2ubuntu2 [95.3 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main armhf libtinfo5 armhf 6.1+20180210-2ubuntu2 [67.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main armhf libprocps6 armhf 2:3.3.12-3ubuntu2 [28.5 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main armhf libncurses6 armhf 6.1+20180210-2ubuntu2 [78.5 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main armhf procps armhf 2:3.3.12-3ubuntu2 [213 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf readline-common all 7.0-4ubuntu1 [52.3 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libreadline7 armhf 7.0-4ubuntu1 [103 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main armhf libbinutils armhf 2.30-17ubuntu1 [309 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-common armhf 2.30-17ubuntu1 [193 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils armhf 2.30-17ubuntu1 [3344 B] Get:34 http://ftpmaster.internal/ubuntu cosmic/main armhf binutils-arm-linux-gnueabihf armhf 2.30-17ubuntu1 [2175 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main armhf libasan4 armhf 7.3.0-17ubuntu1 [327 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main armhf libubsan0 armhf 7.3.0-17ubuntu1 [108 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main armhf libcilkrts5 armhf 7.3.0-17ubuntu1 [35.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main armhf g++-7 armhf 7.3.0-17ubuntu1 [6047 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-7 armhf 7.3.0-17ubuntu1 [5947 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main armhf libstdc++-7-dev armhf 7.3.0-17ubuntu1 [1536 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main armhf libgcc-7-dev armhf 7.3.0-17ubuntu1 [709 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main armhf cpp-7 armhf 7.3.0-17ubuntu1 [5296 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main armhf gcc-7-base armhf 7.3.0-17ubuntu1 [18.9 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf cpp armhf 4:7.3.0-3ubuntu3 [27.6 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf gcc armhf 4:7.3.0-3ubuntu3 [5228 B] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf g++ armhf 4:7.3.0-3ubuntu3 [1600 B] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf build-essential armhf 12.5ubuntu2 [4732 B] Get:50 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf pinentry-curses armhf 1.1.0-1build1 [31.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.4 MB in 1s (28.1 MB/s) (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu3_armhf.deb ... Unpacking base-files (10.1ubuntu3) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu3) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:armhf. (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_armhf.deb ... Unpacking libtinfo6:armhf (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:armhf (6.1+20180210-2ubuntu2) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_armhf.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_armhf.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_armhf.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.1+20180210-2ubuntu2_armhf.deb ... Unpacking ncurses-bin (6.1+20180210-2ubuntu2) over (6.1-1ubuntu1) ... Setting up ncurses-bin (6.1+20180210-2ubuntu2) ... Selecting previously unselected package libncursesw6:armhf. (Reading database ... 12387 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.1+20180210-2ubuntu2_armhf.deb ... Unpacking libncursesw6:armhf (6.1+20180210-2ubuntu2) ... Setting up libncursesw6:armhf (6.1+20180210-2ubuntu2) ... (Reading database ... 12396 files and directories currently installed.) Preparing to unpack .../libuuid1_2.31.1-0.4ubuntu4_armhf.deb ... Unpacking libuuid1:armhf (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libuuid1:armhf (2.31.1-0.4ubuntu4) ... (Reading database ... 12396 files and directories currently installed.) Preparing to unpack .../libblkid1_2.31.1-0.4ubuntu4_armhf.deb ... Unpacking libblkid1:armhf (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:armhf (2.31.1-0.4ubuntu4) ... (Reading database ... 12396 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.31.1-0.4ubuntu4_armhf.deb ... Unpacking libfdisk1:armhf (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:armhf (2.31.1-0.4ubuntu4) ... (Reading database ... 12396 files and directories currently installed.) Preparing to unpack .../libmount1_2.31.1-0.4ubuntu4_armhf.deb ... Unpacking libmount1:armhf (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:armhf (2.31.1-0.4ubuntu4) ... (Reading database ... 12396 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.31.1-0.4ubuntu4_armhf.deb ... Unpacking libsmartcols1:armhf (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up libsmartcols1:armhf (2.31.1-0.4ubuntu4) ... (Reading database ... 12396 files and directories currently installed.) Preparing to unpack .../fdisk_2.31.1-0.4ubuntu4_armhf.deb ... Unpacking fdisk (2.31.1-0.4ubuntu4) over (2.31.1-0.4ubuntu3) ... Setting up fdisk (2.31.1-0.4ubuntu4) ... (Reading database ... 12396 files and directories currently installed.) Preparing to unpack .../util-linux_2.31.1-0.4ubuntu4_armhf.deb ... 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Unpacking gcc-7-base:armhf (7.3.0-17ubuntu1) over (7.3.0-16ubuntu3) ... Preparing to unpack .../18-cpp_4%3a7.3.0-3ubuntu3_armhf.deb ... Unpacking cpp (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../19-gcc_4%3a7.3.0-3ubuntu3_armhf.deb ... Unpacking gcc (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../20-g++_4%3a7.3.0-3ubuntu3_armhf.deb ... Unpacking g++ (4:7.3.0-3ubuntu3) over (4:7.3.0-3ubuntu2) ... Preparing to unpack .../21-dpkg-dev_1.19.0.5ubuntu3_all.deb ... Unpacking dpkg-dev (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../22-libdpkg-perl_1.19.0.5ubuntu3_all.deb ... Unpacking libdpkg-perl (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Preparing to unpack .../23-build-essential_12.5ubuntu2_armhf.deb ... Unpacking build-essential (12.5ubuntu2) over (12.4ubuntu1) ... Preparing to unpack .../24-pinentry-curses_1.1.0-1build1_armhf.deb ... Unpacking pinentry-curses (1.1.0-1build1) over (1.1.0-1) ... Setting up libncurses5:armhf (6.1+20180210-2ubuntu2) ... Setting up libgomp1:armhf (8.1.0-1ubuntu2) ... Setting up libatomic1:armhf (8.1.0-1ubuntu2) ... Setting up readline-common (7.0-4ubuntu1) ... Setting up libcc1-0:armhf (8.1.0-1ubuntu2) ... Setting up libncursesw5:armhf (6.1+20180210-2ubuntu2) ... Setting up libreadline7:armhf (7.0-4ubuntu1) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up libprocps6:armhf (2:3.3.12-3ubuntu2) ... Setting up gcc-7-base:armhf (7.3.0-17ubuntu1) ... Setting up binutils-common:armhf (2.30-17ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libncurses6:armhf (6.1+20180210-2ubuntu2) ... Setting up libasan4:armhf (7.3.0-17ubuntu1) ... Setting up libbinutils:armhf (2.30-17ubuntu1) ... Setting up libcilkrts5:armhf (7.3.0-17ubuntu1) ... Setting up libubsan0:armhf (7.3.0-17ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.30-17ubuntu1) ... Setting up libgcc-7-dev:armhf (7.3.0-17ubuntu1) ... Setting up cpp-7 (7.3.0-17ubuntu1) ... Setting up procps (2:3.3.12-3ubuntu2) ... Setting up libstdc++-7-dev:armhf (7.3.0-17ubuntu1) ... Processing triggers for systemd (237-3ubuntu10) ... Setting up binutils (2.30-17ubuntu1) ... Setting up cpp (4:7.3.0-3ubuntu3) ... Setting up gcc-7 (7.3.0-17ubuntu1) ... Setting up g++-7 (7.3.0-17ubuntu1) ... Setting up gcc (4:7.3.0-3ubuntu3) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up g++ (4:7.3.0-3ubuntu3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14827320 armhf cosmic-proposed -c chroot:build-PACKAGEBUILD-14827320 --arch=armhf --dist=cosmic-proposed --nolog bamtools_2.5.1+dfsg-3.dsc Initiating build PACKAGEBUILD-14827320 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-122-generic #146-Ubuntu SMP Mon Apr 23 15:34:58 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-038.buildd +==============================================================================+ | bamtools 2.5.1+dfsg-3 (armhf) 04 May 2018 21:20 | +==============================================================================+ Package: bamtools Version: 2.5.1+dfsg-3 Source Version: 2.5.1+dfsg-3 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/bamtools-X90KmU/bamtools-2.5.1+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bamtools-X90KmU' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14827320/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bamtools_2.5.1+dfsg-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-cEhepx/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-cEhepx/apt_archive ./ InRelease Get:2 copy:/<>/resolver-cEhepx/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-cEhepx/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-cEhepx/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-cEhepx/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (110 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-cEhepx/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen Filtered Build-Depends: debhelper (>= 11), d-shlibs (>= 0.56), cmake, zlib1g-dev, libjsoncpp-dev, help2man, doxygen dpkg-deb: building package 'sbuild-build-depends-bamtools-dummy' in '/<>/resolver-KdeMco/apt_archive/sbuild-build-depends-bamtools-dummy.deb'. Ign:1 copy:/<>/resolver-KdeMco/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KdeMco/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-KdeMco/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KdeMco/apt_archive ./ Sources [255 B] Get:5 copy:/<>/resolver-KdeMco/apt_archive ./ Packages [572 B] Fetched 2946 B in 0s (107 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install bamtools build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbsd0 libclang1-6.0 libcroco3 libcurl4 libedit2 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu60 libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libllvm6.0 liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtimedate-perl libtool libuv1 libwind0-heimdal libxapian30 libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make dwz doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbsd0 libclang1-6.0 libcroco3 libcurl4 libedit2 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu60 libjsoncpp-dev libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libllvm6.0 liblocale-gettext-perl liblzo2-2 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libtimedate-perl libtool libuv1 libwind0-heimdal libxapian30 libxml2 m4 man-db po-debconf sbuild-build-depends-bamtools-dummy zlib1g-dev 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 46.4 MB of archives. After this operation, 157 MB of additional disk space will be used. Get:1 copy:/<>/resolver-KdeMco/apt_archive ./ sbuild-build-depends-bamtools-dummy 0.invalid.0 [904 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main armhf liblocale-gettext-perl armhf 1.07-3build2 [16.1 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main armhf libbsd0 armhf 0.8.7-1 [40.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main armhf man-db armhf 2.8.3-2 [993 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main armhf liblzo2-2 armhf 2.08-1.2 [44.2 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main armhf libmagic-mgc armhf 1:5.32-2 [184 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main armhf libmagic1 armhf 1:5.32-2 [62.7 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main armhf file armhf 1:5.32-2 [21.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main armhf libexpat1 armhf 2.2.5-3 [59.7 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main armhf libglib2.0-0 armhf 2.56.1-2ubuntu1 [1014 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main armhf libicu60 armhf 60.2-3ubuntu3 [7797 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main armhf libxml2 armhf 2.9.4+dfsg1-6.1ubuntu1 [567 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main armhf gettext-base armhf 0.19.8.1-6build1 [46.2 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main armhf libedit2 armhf 3.1-20170329-1build1 [61.8 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main armhf libkrb5support0 armhf 1.16-2build1 [27.5 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main armhf libk5crypto3 armhf 1.16-2build1 [83.2 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main armhf libkeyutils1 armhf 1.5.9-9.2ubuntu2 [7796 B] Get:21 http://ftpmaster.internal/ubuntu cosmic/main armhf libkrb5-3 armhf 1.16-2build1 [233 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main armhf libgssapi-krb5-2 armhf 1.16-2build1 [101 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main armhf libpsl5 armhf 0.19.1-5build1 [40.5 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main armhf libsigsegv2 armhf 2.12-1 [14.0 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main armhf autoconf all 2.69-11 [322 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main armhf automake all 1:1.15.1-3ubuntu2 [509 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main armhf autopoint all 0.19.8.1-6build1 [412 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf cmake-data all 3.11.1-1ubuntu1 [1367 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main armhf libarchive13 armhf 3.2.2-3.1 [253 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main armhf libroken18-heimdal armhf 7.5.0+dfsg-1 [34.1 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main armhf libasn1-8-heimdal armhf 7.5.0+dfsg-1 [136 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main armhf libheimbase1-heimdal armhf 7.5.0+dfsg-1 [24.1 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main armhf libhcrypto4-heimdal armhf 7.5.0+dfsg-1 [76.5 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main armhf libwind0-heimdal armhf 7.5.0+dfsg-1 [47.2 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main armhf libhx509-5-heimdal armhf 7.5.0+dfsg-1 [87.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main armhf libkrb5-26-heimdal armhf 7.5.0+dfsg-1 [168 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main armhf libheimntlm0-heimdal armhf 7.5.0+dfsg-1 [13.1 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main armhf libgssapi3-heimdal armhf 7.5.0+dfsg-1 [78.8 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.0 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-3ubuntu2 [42.0 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libldap-common all 2.4.46+dfsg-2ubuntu1 [16.8 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf libldap-2.4-2 armhf 2.4.46+dfsg-2ubuntu1 [132 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main armhf libnghttp2-14 armhf 1.30.0-1ubuntu1 [67.4 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [49.1 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main armhf libcurl4 armhf 7.58.0-2ubuntu3 [183 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main armhf libjsoncpp1 armhf 1.7.4-3 [65.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main armhf librhash0 armhf 1.3.6-2 [90.3 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main armhf libuv1 armhf 1.18.0-3 [53.5 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main armhf cmake armhf 3.11.1-1ubuntu1 [2740 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/universe armhf d-shlibs all 0.82 [9880 B] Get:53 http://ftpmaster.internal/ubuntu cosmic/main armhf libtool all 2.4.6-2 [194 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main armhf dh-autoreconf all 17 [15.8 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main armhf libarchive-zip-perl all 1.60-1 [83.9 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main armhf libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main armhf dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:59 http://ftpmaster.internal/ubuntu cosmic/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main armhf gettext armhf 0.19.8.1-6build1 [834 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main armhf po-debconf all 1.0.20 [232 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main armhf debhelper all 11.2.1ubuntu1 [906 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main armhf libllvm6.0 armhf 1:6.0-1ubuntu3 [13.4 MB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main armhf libclang1-6.0 armhf 1:6.0-1ubuntu3 [6360 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main armhf libxapian30 armhf 1.4.5-1 [533 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main armhf doxygen armhf 1.8.13-10 [3459 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/universe armhf help2man armhf 1.47.6 [162 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main armhf libjsoncpp-dev armhf 1.7.4-3 [77.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.4 MB in 2s (26.5 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3build2_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-3build2) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../01-libbsd0_0.8.7-1_armhf.deb ... Unpacking libbsd0:armhf (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.0-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.3-2_armhf.deb ... Unpacking man-db (2.8.3-2) ... 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No schema files found: doing nothing. Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libclang1-6.0:armhf (1:6.0-1ubuntu3) ... Setting up d-shlibs (0.82) ... Setting up gettext-base (0.19.8.1-6build1) ... Setting up cmake-data (3.11.1-1ubuntu1) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up libroken18-heimdal:armhf (7.5.0+dfsg-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.8.7-1) ... Setting up libkrb5support0:armhf (1.16-2build1) ... Setting up libxml2:armhf (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:armhf (1:5.32-2) ... Setting up librhash0:armhf (1.3.6-2) ... Setting up libcroco3:armhf (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libheimbase1-heimdal:armhf (7.5.0+dfsg-1) ... Setting up liblocale-gettext-perl (1.07-3build2) ... Setting up libkeyutils1:armhf (1.5.9-9.2ubuntu2) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6build1) ... Setting up liblzo2-2:armhf (2.08-1.2) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libjsoncpp1:armhf (1.7.4-3) ... Setting up libjsoncpp-dev:armhf (1.7.4-3) ... Setting up libk5crypto3:armhf (1.16-2build1) ... Setting up libwind0-heimdal:armhf (7.5.0+dfsg-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libarchive13:armhf (3.2.2-3.1) ... Setting up libasn1-8-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libhcrypto4-heimdal:armhf (7.5.0+dfsg-1) ... Setting up doxygen (1.8.13-10) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up libhx509-5-heimdal:armhf (7.5.0+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.6) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:armhf (1.16-2build1) ... Setting up libkrb5-26-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libheimntlm0-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libgssapi-krb5-2:armhf (1.16-2build1) ... Setting up libgssapi3-heimdal:armhf (7.5.0+dfsg-1) ... Setting up libldap-2.4-2:armhf (2.4.46+dfsg-2ubuntu1) ... Setting up libcurl4:armhf (7.58.0-2ubuntu3) ... Setting up cmake (3.11.1-1ubuntu1) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up dh-autoreconf (17) ... Setting up sbuild-build-depends-bamtools-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-122-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-17ubuntu1 gcc-7_7.3.0-17ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 linux-libc-dev_4.15.0-20.21 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu3 base-passwd_3.5.44 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-arm-linux-gnueabihf_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 cmake_3.11.1-1ubuntu1 cmake-data_3.11.1-1ubuntu1 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-17ubuntu1 d-shlibs_0.82 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 doxygen_1.8.13-10 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-17ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-17ubuntu1 gcc-7-base_7.3.0-17ubuntu1 gcc-8-base_8.1.0-1ubuntu2 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 help2man_1.47.6 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.6.1 libarchive-zip-perl_1.60-1 libarchive13_3.2.2-3.1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-17ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-1 libassuan0_2.5.1-2 libatomic1_8.1.0-1ubuntu2 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-1ubuntu2 libcilkrts5_7.3.0-17ubuntu1 libclang1-6.0_1:6.0-1ubuntu3 libcom-err2_1.44.1-1 libcomerr2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libcurl4_7.58.0-2ubuntu3 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20170329-1build1 libexpat1_2.2.5-3 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-17ubuntu1 libgcc1_1:8.1.0-1ubuntu2 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-1ubuntu2 libgpg-error0_1.27-6 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhx509-5-heimdal_7.5.0+dfsg-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libjsoncpp-dev_1.7.4-3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu2 libkmod2_24-1ubuntu3 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 libldap-2.4-2_2.4.46+dfsg-2ubuntu1 libldap-common_2.4.46+dfsg-2ubuntu1 libllvm6.0_1:6.0-1ubuntu3 liblocale-gettext-perl_1.07-3build2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 liblzo2-2_2.08-1.2 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnghttp2-14_1.30.0-1ubuntu1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpsl5_0.19.1-5build1 libreadline7_7.0-4ubuntu1 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-17ubuntu1 libstdc++6_8.1.0-1ubuntu2 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2 libubsan0_7.3.0-17ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libuuid1_2.31.1-0.4ubuntu4 libuv1_1.18.0-3 libwind0-heimdal_7.5.0+dfsg-1 libxapian30_1.4.5-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-20.21 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6 perl-base_5.26.1-6 perl-modules-5.26_5.26.1-6 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-4ubuntu1 sbuild-build-depends-bamtools-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Apr 5 10:00:14 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bamtools_2.5.1+dfsg-3.dsc dpkg-source: info: extracting bamtools in bamtools-2.5.1+dfsg dpkg-source: info: unpacking bamtools_2.5.1+dfsg.orig.tar.gz dpkg-source: info: unpacking bamtools_2.5.1+dfsg-3.debian.tar.xz dpkg-source: info: applying doxygen-tweak dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0006-Doxygen-reproducibility dpkg-source: info: applying 0008_Cmake_Test.patch dpkg-source: info: applying spelling Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14827320 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14827320 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14827320 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bamtools dpkg-buildpackage: info: source version 2.5.1+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build bamtools-2.5.1+dfsg dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' dh_auto_configure --arch -- -DBUILD_SHARED_LIBS=on cd obj-arm-linux-gnueabihf && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DBUILD_SHARED_LIBS=on -- The CXX compiler identification is GNU 7.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:22 (cmake_policy): The OLD behavior for policy CMP0042 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Checking for one of the modules 'jsoncpp>=1' Did NOT find system JsonCpp, instead using bundled version -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j4 -Oline "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -H/<>/bamtools-2.5.1+dfsg -B/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/Makefile2 all make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/api /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 1%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 3%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 5%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamWriter.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamReader.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamMultiReader.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/BamAlignment.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamProgram.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 15%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamHeader.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamProgramChain.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroup.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 18%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamSequence.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamHeader_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 23%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamReadGroupDictionary.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 25%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/SamSequenceDictionary.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 27%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamRandomAccessController_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 28%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamIndexFactory_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamWriter_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 30%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 32%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamReader_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 33%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 35%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/bam/BamMultiReader_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFile_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 38%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BtiBlock&}; _Tp = BamTools::Internal::BtiBlock; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BamTools::Internal::BamToolsIndex::ReadBlocks(const BamTools::Internal::BtiReferenceSummary&, BamTools::Internal::BtiBlockVector&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {BamTools::Internal::BtiReferenceSummary}; _Tp = BamTools::Internal::BtiReferenceSummary; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void BamTools::Internal::BamToolsIndex::InitializeFileSummary(const int&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.h:25, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamToolsIndex_p.cpp:10: /usr/include/c++/7/bits/stl_vector.h: In member function ‘virtual bool BamTools::Internal::BamToolsIndex::Create()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 40%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamPipe_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 42%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamFtp_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Internal::BaiAlignmentChunk&}; _Tp = BamTools::Internal::BaiAlignmentChunk; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BamTools::Internal::BamStandardIndex::MergeAlignmentChunks(BamTools::Internal::BaiAlignmentChunkVector&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BamTools::Internal::BamStandardIndex::SaveAlignmentChunkToBin(BamTools::Internal::BaiBinMap&, const uint32_t&, const uint64_t&, const uint64_t&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void BamTools::Internal::BamStandardIndex::SaveLinearOffsetEntry(BamTools::Internal::BaiLinearOffsetVector&, const int&, const int&, const uint64_t&)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.h:26, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:10: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void BamTools::Internal::BamStandardIndex::CalculateCandidateOffsets(const BamTools::Internal::BaiReferenceSummary&, const uint64_t&, std::set&, std::vector&)’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void BamTools::Internal::BamStandardIndex::GetOffset(const BamTools::BamRegion&, int64_t&, bool*)’: /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from /<>/bamtools-2.5.1+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:18: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In member function ‘void BamTools::Internal::BamStandardIndex::SortLinearOffsets(BamTools::Internal::BaiLinearOffsetVector&)’: /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BamHttp_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/ByteArray_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 49%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/BgzfStream_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 50%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/ILocalIODevice_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostAddress_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HostInfo_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 55%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 57%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/HttpHeader_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/RollingBuffer_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 61%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocketEngine_unix_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 62%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/io/TcpSocket_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 64%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/utils/BamException_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatParser_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamHeaderValidator_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/c++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/api/internal/sam/SamFormatPrinter_p.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 66%] Linking CXX shared library libbamtools.so make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbamtools.so.2.5.1 -o libbamtools.so.2.5.1 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/cmake -E cmake_symlink_library libbamtools.so.2.5.1 libbamtools.so.2.5.1 libbamtools.so make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 66%] Built target BamTools make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/utils /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools-utils make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 67%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 69%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 71%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 72%] Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_pileup_engine.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp In file included from /usr/include/c++/7/vector:69:0, from /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp:20: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const BamTools::Fasta::FastaPrivate::FastaIndexData&}; _Tp = BamTools::Fasta::FastaPrivate::FastaIndexData; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_fasta.cpp:20: /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool BamTools::Fasta::FastaPrivate::CreateIndex(const string&)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘bool BamTools::Fasta::FastaPrivate::LoadIndexData()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_utilities.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/c++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/utils/bamtools_options.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 74%] Linking CXX static library libbamtools-utils.a make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1 /usr/bin/ar qc libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o /usr/bin/ranlib libbamtools-utils.a make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 74%] Built target BamTools-utils make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= Scanning dependencies of target bamtools_cmd make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 76%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 77%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 81%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 79%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_coverage.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 83%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_count.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 84%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_index.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 86%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_convert.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 88%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_header.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 89%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_merge.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 91%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_random.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_filter.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_revert.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_resolve.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_sort.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_stats.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/c++ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I/<>/bamtools-2.5.1+dfsg/src -I/<>/bamtools-2.5.1+dfsg/src/api -I/<>/bamtools-2.5.1+dfsg/src/utils -I/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit -I/<>/bamtools-2.5.1+dfsg/src/third_party/jsoncpp -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /<>/bamtools-2.5.1+dfsg/src/toolkit/bamtools_split.cpp make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [100%] Linking CXX executable bamtools make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/bamtools-2.5.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o bamtools -Wl,-rpath,/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api: ../utils/libbamtools-utils.a -ljsoncpp ../api/libbamtools.so.2.5.1 make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg' cd obj-* && ln -s src/toolkit/ bin dh_auto_test --arch cd obj-arm-linux-gnueabihf && make -j4 -Oline test ARGS\+=-j4 make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' Running tests... make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf Start 1: bamtools_help Start 2: bamtools_stats 1/2 Test #1: bamtools_help .................... Passed 0.01 sec 2/2 Test #2: bamtools_stats ................... Passed 0.01 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.01 sec make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j4 -Oline install DESTDIR=/<>/bamtools-2.5.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -H/<>/bamtools-2.5.1+dfsg -B/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/Makefile2 all make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/api /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'. make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 66%] Built target BamTools make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/utils /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'. make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [ 74%] Built target BamTools-utils make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' cd /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/bamtools-2.5.1+dfsg /<>/bamtools-2.5.1+dfsg/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'. make[2]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' [100%] Built target bamtools_cmd make[2]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make -f CMakeFiles/Makefile2 preinstall make[2]: Nothing to be done for 'preinstall'. make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' Install the project... make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' make[1]: Entering directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/bamtools-1.pc -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.1 -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbamtools.so -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /<>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools -- Set runtime path of "/<>/bamtools-2.5.1+dfsg/debian/tmp/usr/bin/bamtools" to "" make[1]: Leaving directory '/<>/bamtools-2.5.1+dfsg/obj-arm-linux-gnueabihf' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.5.1/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.1 found in none of the libraries dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libbamtools-dev (in debian/libbamtools-dev); do_strip: , oemstrip: pkgstriptranslations: processing bamtools (in debian/bamtools); do_strip: , oemstrip: pkgstriptranslations: processing libbamtools2.5.1-dbgsym (in debian/.debhelper/libbamtools2.5.1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbamtools-dev/DEBIAN/control, package libbamtools-dev, directory debian/libbamtools-dev INFO: pkgstripfiles: waiting for lock (libbamtools-dev) ... pkgstripfiles: processing control file: debian/.debhelper/libbamtools2.5.1/dbgsym-root/DEBIAN/control, package libbamtools2.5.1-dbgsym, directory debian/.debhelper/libbamtools2.5.1/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbamtools2.5.1-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbamtools2.5.1-dbgsym' in 'debian/.debhelper/scratch-space/build-libbamtools2.5.1/libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_armhf.deb'. INFO: pkgstripfiles: waiting for lock (libbamtools-dev) ... Renaming libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_armhf.deb to libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_armhf.ddeb INFO: pkgstripfiles: waiting for lock (libbamtools-dev) ... INFO: pkgstripfiles: waiting for lock (libbamtools-dev) ... INFO: pkgstripfiles: waiting for lock (libbamtools-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bamtools/DEBIAN/control, package bamtools, directory debian/bamtools Searching for duplicated docs in dependency libbamtools2.5.1... symlinking changelog.Debian.gz in bamtools to file in libbamtools2.5.1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package bamtools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bamtools' in '../bamtools_2.5.1+dfsg-3_armhf.deb'. Searching for duplicated docs in dependency libbamtools2.5.1... symlinking changelog.Debian.gz in libbamtools-dev to file in libbamtools2.5.1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbamtools-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbamtools-dev' in '../libbamtools-dev_2.5.1+dfsg-3_armhf.deb'. INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing libbamtools2.5.1 (in debian/libbamtools2.5.1); do_strip: , oemstrip: pkgstriptranslations: processing bamtools-dbgsym (in debian/.debhelper/bamtools/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbamtools2.5.1/DEBIAN/control, package libbamtools2.5.1, directory debian/libbamtools2.5.1 pkgstripfiles: Truncating usr/share/doc/libbamtools2.5.1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libbamtools2.5.1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libbamtools2.5.1' in '../libbamtools2.5.1_2.5.1+dfsg-3_armhf.deb'. pkgstripfiles: processing control file: debian/.debhelper/bamtools/dbgsym-root/DEBIAN/control, package bamtools-dbgsym, directory debian/.debhelper/bamtools/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package bamtools-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bamtools-dbgsym' in 'debian/.debhelper/scratch-space/build-bamtools/bamtools-dbgsym_2.5.1+dfsg-3_armhf.deb'. Renaming bamtools-dbgsym_2.5.1+dfsg-3_armhf.deb to bamtools-dbgsym_2.5.1+dfsg-3_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../bamtools_2.5.1+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build bamtools-2.5.1+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180504-2123 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bamtools_2.5.1+dfsg-3_armhf.changes: ------------------------------------ Format: 1.8 Date: Thu, 05 Apr 2018 11:54:57 +0200 Source: bamtools Binary: bamtools libbamtools-dev libbamtools2.5.1 libbamtools-doc Architecture: armhf Version: 2.5.1+dfsg-3 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools-doc - docs for dynamic library for manipulating BAM (genome alignment) libbamtools2.5.1 - dynamic library for manipulating BAM (genome alignment) files Closes: 894886 Changes: bamtools (2.5.1+dfsg-3) unstable; urgency=medium . * Point Vcs fields to salsa.debian.org * Use Breaks+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) since the includes were formerly in lib package Closes: #894886 Checksums-Sha1: b3fd2c801f24c873cbf266a159095e093f506758 2392268 bamtools-dbgsym_2.5.1+dfsg-3_armhf.ddeb bf73b793c4710043abd9ce9fa811b7dcc079eb67 7921 bamtools_2.5.1+dfsg-3_armhf.buildinfo 89caf96cf246b742cb5a606485cf25ca457ca88f 148368 bamtools_2.5.1+dfsg-3_armhf.deb 4cca675cf3a3e3bdc860cdd01df86e1184d90b96 19820 libbamtools-dev_2.5.1+dfsg-3_armhf.deb d2f904e2faa5ced95e89f9613ff6e6adc60d1a6c 2009288 libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_armhf.ddeb e18c74ce11e675409ab66f5afd3f82b4840d9637 132512 libbamtools2.5.1_2.5.1+dfsg-3_armhf.deb Checksums-Sha256: b7bf33115a4ab425db2b67225f2a9c415e77cfd98d4fd71ec66943aced34a21d 2392268 bamtools-dbgsym_2.5.1+dfsg-3_armhf.ddeb b4e9df621fec52d4fde7fa79570005b9b748275560addfb4f4950da4c11f9cff 7921 bamtools_2.5.1+dfsg-3_armhf.buildinfo 75ecdffe8cbac12b98087319638a68bc415c7c0147942f5dda9c1b7b1b1c6a18 148368 bamtools_2.5.1+dfsg-3_armhf.deb 1fd7a85bd01e04442f00df5bd9a0c4ffb29643a9701bdbec3d0f8db66144b776 19820 libbamtools-dev_2.5.1+dfsg-3_armhf.deb b5ff7dff730e3ccd5b326ff83139eced1552e8915895dfebf74bca0b726def05 2009288 libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_armhf.ddeb 457cf0ab39636a60a594d5d60e2a15c898a95a63dd2fa13e353f4806fe6364ac 132512 libbamtools2.5.1_2.5.1+dfsg-3_armhf.deb Files: 0a534477451c638358db84dccdb2a979 2392268 debug optional bamtools-dbgsym_2.5.1+dfsg-3_armhf.ddeb 68013d29c6e49fdb6b86860bb5c559ba 7921 science optional bamtools_2.5.1+dfsg-3_armhf.buildinfo c74c2ea4a3e4e8ea0a5e9c395e10d125 148368 science optional bamtools_2.5.1+dfsg-3_armhf.deb b630c587187f97454c840e9639cdd110 19820 libdevel optional libbamtools-dev_2.5.1+dfsg-3_armhf.deb adbe108b90158eaf695af923a94005ee 2009288 debug optional libbamtools2.5.1-dbgsym_2.5.1+dfsg-3_armhf.ddeb b51f085e33da2029f9ac1cdbab43a6ab 132512 libs optional libbamtools2.5.1_2.5.1+dfsg-3_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bamtools_2.5.1+dfsg-3_armhf.deb ------------------------------- new debian package, version 2.0. size 148368 bytes: control archive=1516 bytes. 1870 bytes, 38 lines control 545 bytes, 8 lines md5sums Package: bamtools Version: 2.5.1+dfsg-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 371 Depends: libbamtools2.5.1, libc6 (>= 2.4), libgcc1 (>= 1:3.5), libjsoncpp1 (>= 1.7.4), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit. . Available bamtools commands: convert Converts between BAM and a number of other formats count Prints number of alignments in BAM file(s) coverage Prints coverage statistics from the input BAM file filter Filters BAM file(s) by user-specified criteria header Prints BAM header information index Generates index for BAM file merge Merge multiple BAM files into single file random Select random alignments from existing BAM file(s), intended more as a testing tool. resolve Resolves paired-end reads (marking the IsProperPair flag as needed) revert Removes duplicate marks and restores original base qualities sort Sorts the BAM file according to some criteria split Splits a BAM file on user-specified property, creating a new BAM output file for each value found stats Prints some basic statistics from input BAM file(s) drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/bin/ -rwxr-xr-x root/root 357916 2018-04-05 09:54 ./usr/bin/bamtools drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/bamtools/ -rw-r--r-- root/root 262 2018-04-05 09:54 ./usr/share/doc/bamtools/README.test lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/share/doc/bamtools/changelog.Debian.gz -> ../libbamtools2.5.1/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/bamtools/copyright -rw-r--r-- root/root 352 2018-04-05 09:54 ./usr/share/doc/bamtools/filter_script -rw-r--r-- root/root 970 2018-04-05 09:54 ./usr/share/doc/bamtools/run-unit-test -rw-r--r-- root/root 375 2018-04-05 09:54 ./usr/share/doc/bamtools/sam_spec_example.bam drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 71 2018-04-05 09:54 ./usr/share/lintian/overrides/bamtools drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/man/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/man/man1/ -rw-r--r-- root/root 792 2018-04-05 09:54 ./usr/share/man/man1/bamtools.1.gz libbamtools-dev_2.5.1+dfsg-3_armhf.deb -------------------------------------- new debian package, version 2.0. size 19820 bytes: control archive=1516 bytes. 1073 bytes, 26 lines control 1645 bytes, 22 lines md5sums Package: libbamtools-dev Source: bamtools Version: 2.5.1+dfsg-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 130 Depends: libbamtools2.5.1 (= 2.5.1+dfsg-3) Suggests: libbamtools-doc (= 2.5.1+dfsg-3) Breaks: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package. drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/api/ -rw-r--r-- root/root 848 2017-12-23 18:10 ./usr/include/bamtools/api/BamAlgorithms.h -rw-r--r-- root/root 22766 2018-04-05 09:54 ./usr/include/bamtools/api/BamAlignment.h -rw-r--r-- root/root 14259 2017-12-23 18:10 ./usr/include/bamtools/api/BamAux.h -rw-r--r-- root/root 9234 2017-12-23 18:10 ./usr/include/bamtools/api/BamConstants.h -rw-r--r-- root/root 2754 2017-12-23 18:10 ./usr/include/bamtools/api/BamIndex.h -rw-r--r-- root/root 4242 2017-12-23 18:10 ./usr/include/bamtools/api/BamMultiReader.h -rw-r--r-- root/root 3780 2017-12-23 18:10 ./usr/include/bamtools/api/BamReader.h -rw-r--r-- root/root 1950 2017-12-23 18:10 ./usr/include/bamtools/api/BamWriter.h -rw-r--r-- root/root 2818 2017-12-23 18:10 ./usr/include/bamtools/api/IBamIODevice.h -rw-r--r-- root/root 3491 2017-12-23 18:10 ./usr/include/bamtools/api/SamConstants.h -rw-r--r-- root/root 2899 2017-12-23 18:10 ./usr/include/bamtools/api/SamHeader.h -rw-r--r-- root/root 2332 2017-12-23 18:10 ./usr/include/bamtools/api/SamProgram.h -rw-r--r-- root/root 2897 2017-12-23 18:10 ./usr/include/bamtools/api/SamProgramChain.h -rw-r--r-- root/root 3266 2017-12-23 18:10 ./usr/include/bamtools/api/SamReadGroup.h -rw-r--r-- root/root 3083 2017-12-23 18:10 ./usr/include/bamtools/api/SamReadGroupDictionary.h -rw-r--r-- root/root 2570 2017-12-23 18:10 ./usr/include/bamtools/api/SamSequence.h -rw-r--r-- root/root 3043 2017-12-23 18:10 ./usr/include/bamtools/api/SamSequenceDictionary.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/api/algorithms/ -rw-r--r-- root/root 12242 2017-12-23 18:10 ./usr/include/bamtools/api/algorithms/Sort.h -rw-r--r-- root/root 754 2017-12-23 18:10 ./usr/include/bamtools/api/api_global.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/include/bamtools/shared/ -rw-r--r-- root/root 2346 2017-12-23 18:10 ./usr/include/bamtools/shared/bamtools_global.h drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.5.1 drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/cmake/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/cmake/bamtools/ -rw-r--r-- root/root 1574 2018-04-05 09:54 ./usr/share/cmake/bamtools/bamtools-config.cmake drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/ lrwxrwxrwx root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz -> ../libbamtools2.5.1/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/libbamtools-dev/copyright libbamtools2.5.1_2.5.1+dfsg-3_armhf.deb --------------------------------------- new debian package, version 2.0. size 132512 bytes: control archive=1100 bytes. 982 bytes, 23 lines control 243 bytes, 3 lines md5sums 35 bytes, 1 lines shlibs 74 bytes, 2 lines triggers Package: libbamtools2.5.1 Source: bamtools Version: 2.5.1+dfsg-3 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 324 Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/pezmaster31/bamtools/wiki Description: dynamic library for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the runtime library. drwxr-xr-x root/root 0 2018-04-05 09:54 ./ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 316836 2018-04-05 09:54 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.5.1 drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/ -rw-r--r-- root/root 1707 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/changelog.Debian.gz -rw-r--r-- root/root 1665 2018-04-05 09:54 ./usr/share/doc/libbamtools2.5.1/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 67636 Build-Time: 117 Distribution: cosmic-proposed Host Architecture: armhf Install-Time: 33 Job: bamtools_2.5.1+dfsg-3.dsc Machine Architecture: arm64 Package: bamtools Package-Time: 152 Source-Version: 2.5.1+dfsg-3 Space: 67636 Status: successful Version: 2.5.1+dfsg-3 -------------------------------------------------------------------------------- Finished at 20180504-2123 Build needed 00:02:32, 67636k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14827320 Scanning for processes to kill in build PACKAGEBUILD-14827320 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14827320 Stopping target for build PACKAGEBUILD-14827320 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=armhf PACKAGEBUILD-14827320 Removing build PACKAGEBUILD-14827320