Ubuntu
bamtools package

bamtools 2.5.3+dfsg-1 source package in Ubuntu

Changelog

bamtools (2.5.3+dfsg-1) unstable; urgency=medium

  * Team upload
  * New upstream version
  * Fix FTBFS with CMake 4 (Closes: #1112718)
  * Standards-Version: 4.7.2 (routine-update)
  * Drop outdated patches
  * Add Doxyfile version patch

 -- Dominique Belhachemi <email address hidden>  Fri, 26 Sep 2025 21:59:11 -0400

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Resolute release universe misc

Downloads

File Size SHA-256 Checksum
bamtools_2.5.3+dfsg-1.dsc 2.3 KiB fc246e4377d59616aa5855e5589bda0d7f6f57aeb06d47f781230aaa94aa24db
bamtools_2.5.3+dfsg.orig.tar.xz 152.8 KiB 5336ee8aefef357a09f1aa847ef04a4db53041e8ec24bcd74bb1e69d751cacd3
bamtools_2.5.3+dfsg-1.debian.tar.xz 9.9 KiB b02b9f3f41dec19bdc6cbc8741b13230eec5b0bb45b19247de1dc24df15f4c09

No changes file available.

Binary packages built by this source

bamtools: toolkit for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the bamtools command-line toolkit.
 .
 Available bamtools commands:
  convert Converts between BAM and a number of other formats
  count Prints number of alignments in BAM file(s)
  coverage Prints coverage statistics from the input BAM file
  filter Filters BAM file(s) by user-specified criteria
  header Prints BAM header information
  index Generates index for BAM file
  merge Merge multiple BAM files into single file
  random Select random alignments from existing BAM file(s), intended more
           as a testing tool.
  resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
  revert Removes duplicate marks and restores original base qualities
  sort Sorts the BAM file according to some criteria
  split Splits a BAM file on user-specified property, creating a new BAM
           output file for each value found
  stats Prints some basic statistics from input BAM file(s)

bamtools-dbgsym: debug symbols for bamtools
libbamtools-dev: C++ API for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the developers API package.

libbamtools-doc: docs for dynamic library for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the documentation for the library.

libbamtools2.5.3: dynamic library for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the runtime library.

libbamtools2.5.3-dbgsym: debug symbols for libbamtools2.5.3