Ubuntu
bbmap package

bbmap 39.01+dfsg-2 source package in Ubuntu

Changelog

bbmap (39.01+dfsg-2) unstable; urgency=medium

  * d/control: bump bbmap dependency to openjdk-17-jre-headless.

 -- Étienne Mollier <email address hidden>  Fri, 11 Nov 2022 14:24:14 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc
Lunar release universe misc

Downloads

File Size SHA-256 Checksum
bbmap_39.01+dfsg-2.dsc 2.2 KiB 686506ff482829ee55d9234fa98c262dc91f59817c1ab3f122d9108a461f8c1b
bbmap_39.01+dfsg.orig.tar.xz 4.3 MiB 2df885877f4956a8f8461266f7463118e9cf8f9d1e59db2df72c907a90b9d5a8
bbmap_39.01+dfsg-2.debian.tar.xz 24.5 KiB cbc4af9443b2fee3930a2ca024bc4d653b08046e37efa95788a636aa84a79f0d

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Binary packages built by this source

bbmap: BBTools genomic aligner and other tools for short sequences

 The BBTools are a collection of small programs to solve recurrent
 tasks for the creative handling of short biological RNA/DNA sequences.
 This suite may be best known for its mapper, which is also the name of
 the project on sourceforge, but several tools have been added over time.
 All tools are multi-threaded, implemented platform-independently in Java:
 .
 BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
 arbitrarily large genomes with millions of scaffolds. Handles Illumina,
 PacBio, 454, and other reads; very high sensitivity and tolerant of
 errors and numerous large indels.
 .
 BBNorm: Kmer-based error-correction and normalization tool.
 .
 Dedupe: Simplifies assemblies by removing duplicate or contained
 subsequences that share a target percent identity.
 .
 Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam,
 interleaved/paired, and ASCII-33/64, at over 500 MB/s.
 .
 BBDuk: Filters, trims, or masks reads with kmer matches to an
 artifact/contaminant file.

bbmap-jni: short read aligner and other bioinformatic tools - JNI library

 BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
 arbitrarily large genomes with millions of scaffolds. Handles Illumina,
 PacBio, 454, and other reads; very high sensitivity and tolerant of
 errors and numerous large indels.
 .
 This package contains the architecture dependent library for the bbmap
 tools.

bbmap-jni-dbgsym: debug symbols for bbmap-jni