https://launchpad.net/ubuntu/+source/bcbio/1.2.5-1/+build/20937648 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-056 4.15.0-140-generic #144-Ubuntu SMP Fri Mar 19 14:12:35 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_195~480~ubuntu18.04.1 python3-lpbuildd_195~480~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.8 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 8 Apr 11:05:01 ntpdate[1693]: adjust time server 10.211.37.1 offset -0.000168 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20937648 --image-type chroot /home/buildd/filecache-default/720a8366e1260e086c1691fe6381a3f2b1c21d81 Creating target for build PACKAGEBUILD-20937648 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20937648 Starting target for build PACKAGEBUILD-20937648 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20937648 'deb http://ftpmaster.internal/ubuntu hirsute main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu hirsute-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-20937648 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20937648 Updating target for build PACKAGEBUILD-20937648 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [269 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main amd64 Packages [1405 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/restricted amd64 Packages [78.7 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/restricted Translation-en [12.1 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute/universe amd64 Packages [13.2 MB] Get:10 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5449 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/multiverse amd64 Packages [204 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/multiverse Translation-en [107 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 Packages [73.9 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [23.1 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 Packages [127 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [51.1 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/multiverse amd64 Packages [20.5 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/multiverse Translation-en [9692 B] Fetched 21.8 MB in 3s (7064 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-11-base libisl23 libperl5.32 libxxhash0 lto-disabled-list perl-modules-5.32 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 ca-certificates coreutils cpp-10 dash dpkg dpkg-dev e2fsprogs fakeroot findutils g++-10 gcc-10 gcc-10-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libargon2-1 libasan6 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfakeroot libffi8ubuntu1 libgcc-10-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libitm1 libjson-c5 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre2-8-0 libpcre3 libpng16-16 libprocps8 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-10-dev libstdc++6 libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave mount ncurses-base ncurses-bin openssl passwd patch perl perl-base pkgbinarymangler procps readline-common sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 147 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. Need to get 94.9 MB of archives. After this operation, 58.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfakeroot amd64 1.25.3-1.1ubuntu2 [28.1 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute/main amd64 fakeroot amd64 1.25.3-1.1ubuntu2 [62.9 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcrypt-dev amd64 1:4.4.17-1ubuntu3 [104 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc6-dev amd64 2.33-0ubuntu5 [2143 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc-dev-bin amd64 2.33-0ubuntu5 [19.3 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcrypt1 amd64 1:4.4.17-1ubuntu3 [75.2 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main amd64 linux-libc-dev amd64 5.11.0-13.14 [1189 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc-common all 1.3.1-1build1 [7316 B] Get:9 http://ftpmaster.internal/ubuntu hirsute/main amd64 libk5crypto3 amd64 1.18.3-4 [77.9 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgssapi-krb5-2 amd64 1.18.3-4 [129 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5-3 amd64 1.18.3-4 [326 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5support0 amd64 1.18.3-4 [30.8 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcom-err2 amd64 1.45.7-1ubuntu2 [10.3 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main amd64 libssl1.1 amd64 1.1.1j-1ubuntu3 [1324 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc-dev amd64 1.3.1-1build1 [183 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtirpc3 amd64 1.3.1-1build1 [76.8 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc6 amd64 2.33-0ubuntu5 [2690 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libc-bin amd64 2.33-0ubuntu5 [646 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main amd64 gcc-11-base amd64 11-20210404-1ubuntu1 [19.2 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgcc-s1 amd64 11-20210404-1ubuntu1 [42.1 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-files amd64 11ubuntu18 [60.6 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main amd64 bash amd64 5.1-2ubuntu1 [731 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main amd64 bsdutils amd64 1:2.36.1-7ubuntu2 [87.7 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main amd64 coreutils amd64 8.32-4ubuntu2 [1353 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main amd64 tar amd64 1.34+dfsg-1build1 [281 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main amd64 dpkg amd64 1.20.7.1ubuntu4 [1261 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main amd64 dash amd64 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 [87.1 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main amd64 findutils amd64 4.8.0-1ubuntu1 [332 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main amd64 grep amd64 3.6-1 [155 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main amd64 gzip amd64 1.10-2ubuntu3 [95.1 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main amd64 login amd64 1:4.8.1-1ubuntu8 [220 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main amd64 libncurses6 amd64 6.2+20201114-2build1 [101 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main amd64 libncursesw6 amd64 6.2+20201114-2build1 [132 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtinfo6 amd64 6.2+20201114-2build1 [87.1 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main amd64 ncurses-bin amd64 6.2+20201114-2build1 [173 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main amd64 perl-modules-5.32 all 5.32.1-3ubuntu2 [2755 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main amd64 libperl5.32 amd64 5.32.1-3ubuntu2 [4047 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main amd64 perl amd64 5.32.1-3ubuntu2 [225 kB] Get:39 http://ftpmaster.internal/ubuntu hirsute/main amd64 perl-base amd64 5.32.1-3ubuntu2 [1592 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main amd64 bzip2 amd64 1.0.8-4ubuntu3 [33.4 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbz2-1.0 amd64 1.0.8-4ubuntu3 [32.1 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.6ubuntu4 [676 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgdbm6 amd64 1.19-2 [27.5 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgdbm-compat4 amd64 1.19-2 [6236 B] Get:45 http://ftpmaster.internal/ubuntu hirsute/main amd64 zlib1g amd64 1:1.2.11.dfsg-2ubuntu6 [54.0 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main amd64 util-linux amd64 2.36.1-7ubuntu2 [1074 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdebconfclient0 amd64 0.256ubuntu3 [6100 B] Get:48 http://ftpmaster.internal/ubuntu hirsute/main amd64 base-passwd amd64 3.5.49 [47.5 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main amd64 init-system-helpers all 1.60 [37.8 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main amd64 ncurses-base all 6.2+20201114-2build1 [18.4 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main amd64 sysvinit-utils amd64 2.96-6ubuntu1 [20.8 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxxhash0 amd64 0.8.0-2 [25.3 kB] Get:53 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgpg-error0 amd64 1.38-2build1 [63.7 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgcrypt20 amd64 1.8.7-2ubuntu2 [424 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblz4-1 amd64 1.9.3-1build1 [55.5 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblzma5 amd64 5.2.5-1.0build2 [96.6 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main amd64 libstdc++6 amd64 11-20210404-1ubuntu1 [583 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgmp10 amd64 2:6.2.1+dfsg-1ubuntu2 [236 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnettle8 amd64 3.7-2.1 [145 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhogweed6 amd64 3.7-2.1 [195 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main amd64 libidn2-0 amd64 2.3.0-5 [52.2 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main amd64 libffi8ubuntu1 amd64 3.4~20200819gead65ca871-0ubuntu5 [20.0 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main amd64 libp11-kit0 amd64 0.23.22-1 [191 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgnutls30 amd64 3.7.0-5ubuntu1 [918 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd-sysv amd64 247.3-3ubuntu3 [10.3 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit-common all 1:3.0-2ubuntu1 [4836 B] Get:67 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcap-ng0 amd64 0.7.9-2.2build1 [11.0 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main amd64 libaudit1 amd64 1:3.0-2ubuntu1 [40.5 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre2-8-0 amd64 10.36-2ubuntu5 [204 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main amd64 libselinux1 amd64 3.1-3build1 [69.6 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage-common all 3.1-1ubuntu1 [9872 B] Get:72 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsemanage1 amd64 3.1-1ubuntu1 [86.6 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsepol1 amd64 3.1-1ubuntu1 [259 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/main amd64 passwd amd64 1:4.8.1-1ubuntu8 [798 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main amd64 adduser all 3.118ubuntu5 [156 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd-timesyncd amd64 247.3-3ubuntu3 [28.2 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main amd64 libacl1 amd64 2.2.53-10ubuntu1 [15.3 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapparmor1 amd64 3.0.0-0ubuntu7 [34.5 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main amd64 libargon2-1 amd64 0~20171227-0.2build21.04.0 [19.2 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main amd64 libblkid1 amd64 2.36.1-7ubuntu2 [132 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libudev1 amd64 247.3-3ubuntu3 [69.6 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdevmapper1.02.1 amd64 2:1.02.175-2ubuntu4 [128 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjson-c5 amd64 0.15-2build2 [30.9 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuuid1 amd64 2.36.1-7ubuntu2 [22.2 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcryptsetup12 amd64 2:2.3.4-1ubuntu3 [195 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main amd64 libip4tc2 amd64 1.8.7-1ubuntu2 [18.7 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkmod2 amd64 28-1ubuntu2 [44.4 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmount1 amd64 2.36.1-7ubuntu2 [146 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main amd64 libseccomp2 amd64 2.5.1-1ubuntu1 [43.3 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute/main amd64 mount amd64 2.36.1-7ubuntu2 [121 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 systemd amd64 247.3-3ubuntu3 [4323 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libsystemd0 amd64 247.3-3ubuntu3 [276 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/main amd64 libzstd1 amd64 1.4.8+dfsg-2build2 [293 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/main amd64 libapt-pkg6.0 amd64 2.2.2ubuntu1 [811 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main amd64 gpgv amd64 2.2.20-1ubuntu3 [202 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main amd64 ubuntu-keyring all 2021.03.26 [20.9 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main amd64 apt amd64 2.2.2ubuntu1 [1302 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main amd64 logsave amd64 1.45.7-1ubuntu2 [11.0 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main amd64 libext2fs2 amd64 1.45.7-1ubuntu2 [185 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main amd64 e2fsprogs amd64 1.45.7-1ubuntu2 [533 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/main amd64 init amd64 1.60 [6040 B] Get:102 http://ftpmaster.internal/ubuntu hirsute/main amd64 libattr1 amd64 1:2.4.48-6build1 [12.8 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcre3 amd64 2:8.39-13build3 [234 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsmartcols1 amd64 2.36.1-7ubuntu2 [95.3 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgomp1 amd64 11-20210404-1ubuntu1 [107 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/main amd64 libitm1 amd64 11-20210404-1ubuntu1 [26.4 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main amd64 libatomic1 amd64 11-20210404-1ubuntu1 [9232 B] Get:108 http://ftpmaster.internal/ubuntu hirsute/main amd64 libasan6 amd64 11-20210404-1ubuntu1 [2140 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblsan0 amd64 11-20210404-1ubuntu1 [894 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtsan0 amd64 11-20210404-1ubuntu1 [2090 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/main amd64 libubsan1 amd64 11-20210404-1ubuntu1 [845 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/main amd64 libquadmath0 amd64 11-20210404-1ubuntu1 [146 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/main amd64 g++-10 amd64 10.2.1-24ubuntu1 [9803 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/main amd64 gcc-10 amd64 10.2.1-24ubuntu1 [17.5 MB] Get:115 http://ftpmaster.internal/ubuntu hirsute/main amd64 libstdc++-10-dev amd64 10.2.1-24ubuntu1 [1753 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgcc-10-dev amd64 10.2.1-24ubuntu1 [2341 kB] Get:117 http://ftpmaster.internal/ubuntu hirsute/main amd64 libisl23 amd64 0.23-1build1 [661 kB] Get:118 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmpfr6 amd64 4.1.0-3build1 [1400 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmpc3 amd64 1.2.0-1build1 [44.1 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcc1-0 amd64 11-20210404-1ubuntu1 [48.7 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/main amd64 libctf0 amd64 2.36.1-6ubuntu1 [95.0 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/main amd64 libctf-nobfd0 amd64 2.36.1-6ubuntu1 [97.8 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/main amd64 binutils-x86-64-linux-gnu amd64 2.36.1-6ubuntu1 [1830 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbinutils amd64 2.36.1-6ubuntu1 [584 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute/main amd64 binutils amd64 2.36.1-6ubuntu1 [3388 B] Get:126 http://ftpmaster.internal/ubuntu hirsute/main amd64 binutils-common amd64 2.36.1-6ubuntu1 [217 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute/main amd64 cpp-10 amd64 10.2.1-24ubuntu1 [8613 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/main amd64 gcc-10-base amd64 10.2.1-24ubuntu1 [20.3 kB] Get:129 http://ftpmaster.internal/ubuntu hirsute/main amd64 libprocps8 amd64 2:3.3.16-5ubuntu3 [32.4 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/main amd64 libss2 amd64 1.45.7-1ubuntu2 [11.4 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/main amd64 procps amd64 2:3.3.16-5ubuntu3 [232 kB] Get:132 http://ftpmaster.internal/ubuntu hirsute/main amd64 sensible-utils all 0.0.14 [13.5 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/main amd64 openssl amd64 1.1.1j-1ubuntu3 [625 kB] Get:134 http://ftpmaster.internal/ubuntu hirsute/main amd64 ca-certificates all 20210119build1 [147 kB] Get:135 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcap2 amd64 1:2.44-1build1 [16.8 kB] Get:136 http://ftpmaster.internal/ubuntu hirsute/main amd64 readline-common all 8.1-1 [54.1 kB] Get:137 http://ftpmaster.internal/ubuntu hirsute/main amd64 libreadline8 amd64 8.1-1 [137 kB] Get:138 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsqlite3-0 amd64 3.34.1-3 [588 kB] Get:139 http://ftpmaster.internal/ubuntu hirsute/main amd64 tzdata all 2021a-1ubuntu1 [294 kB] Get:140 http://ftpmaster.internal/ubuntu hirsute/main amd64 xz-utils amd64 5.2.5-1.0build2 [81.6 kB] Get:141 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpng16-16 amd64 1.6.37-3build3 [184 kB] Get:142 http://ftpmaster.internal/ubuntu hirsute/main amd64 dpkg-dev all 1.20.7.1ubuntu4 [935 kB] Get:143 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdpkg-perl all 1.20.7.1ubuntu4 [233 kB] Get:144 http://ftpmaster.internal/ubuntu hirsute/main amd64 patch amd64 2.7.6-7 [105 kB] Get:145 http://ftpmaster.internal/ubuntu hirsute/main amd64 lto-disabled-list all 6 [11.3 kB] Get:146 http://ftpmaster.internal/ubuntu hirsute/main amd64 libassuan0 amd64 2.5.4-1ubuntu1 [35.7 kB] Get:147 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnpth0 amd64 1.6-3 [8220 B] Get:148 http://ftpmaster.internal/ubuntu hirsute/main amd64 gpg amd64 2.2.20-1ubuntu3 [486 kB] Get:149 http://ftpmaster.internal/ubuntu hirsute/main amd64 gpgconf amd64 2.2.20-1ubuntu3 [125 kB] Get:150 http://ftpmaster.internal/ubuntu hirsute/main amd64 gpg-agent amd64 2.2.20-1ubuntu3 [233 kB] Get:151 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblockfile-bin amd64 1.17-1 [11.9 kB] Get:152 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblockfile1 amd64 1.17-1 [6716 B] Get:153 http://ftpmaster.internal/ubuntu hirsute/main amd64 pkgbinarymangler all 147 [31.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 94.9 MB in 2s (39.3 MB/s) (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../0-libfakeroot_1.25.3-1.1ubuntu2_amd64.deb ... Unpacking libfakeroot:amd64 (1.25.3-1.1ubuntu2) over (1.25.2-1) ... Preparing to unpack .../1-fakeroot_1.25.3-1.1ubuntu2_amd64.deb ... Unpacking fakeroot (1.25.3-1.1ubuntu2) over (1.25.2-1) ... Preparing to unpack .../2-libcrypt-dev_1%3a4.4.17-1ubuntu3_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1ubuntu3) over (1:4.4.16-1ubuntu1) ... Preparing to unpack .../3-libc6-dev_2.33-0ubuntu5_amd64.deb ... Unpacking libc6-dev:amd64 (2.33-0ubuntu5) over (2.32-0ubuntu3) ... Preparing to unpack .../4-libc-dev-bin_2.33-0ubuntu5_amd64.deb ... Unpacking libc-dev-bin (2.33-0ubuntu5) over (2.32-0ubuntu3) ... Preparing to unpack .../5-libcrypt1_1%3a4.4.17-1ubuntu3_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.17-1ubuntu3) over (1:4.4.16-1ubuntu1) ... Setting up libcrypt1:amd64 (1:4.4.17-1ubuntu3) ... (Reading database ... 12978 files and directories currently installed.) Preparing to unpack .../00-linux-libc-dev_5.11.0-13.14_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.11.0-13.14) over (5.8.0-25.26) ... Preparing to unpack .../01-libtirpc-common_1.3.1-1build1_all.deb ... Unpacking libtirpc-common (1.3.1-1build1) over (1.2.6-1build1) ... Preparing to unpack .../02-libk5crypto3_1.18.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.18.3-4) over (1.17-10) ... Preparing to unpack .../03-libgssapi-krb5-2_1.18.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.18.3-4) over (1.17-10) ... Preparing to unpack .../04-libkrb5-3_1.18.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.18.3-4) over (1.17-10) ... Preparing to unpack .../05-libkrb5support0_1.18.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.18.3-4) over (1.17-10) ... Preparing to unpack .../06-libcom-err2_1.45.7-1ubuntu2_amd64.deb ... Unpacking libcom-err2:amd64 (1.45.7-1ubuntu2) over (1.45.6-1ubuntu1) ... Preparing to unpack .../07-libssl1.1_1.1.1j-1ubuntu3_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1j-1ubuntu3) over (1.1.1f-1ubuntu4) ... Preparing to unpack .../08-libtirpc-dev_1.3.1-1build1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.1-1build1) over (1.2.6-1build1) ... Preparing to unpack .../09-libtirpc3_1.3.1-1build1_amd64.deb ... Unpacking libtirpc3:amd64 (1.3.1-1build1) over (1.2.6-1build1) ... Preparing to unpack .../10-libc6_2.33-0ubuntu5_amd64.deb ... Unpacking libc6:amd64 (2.33-0ubuntu5) over (2.32-0ubuntu3) ... Setting up libc6:amd64 (2.33-0ubuntu5) ... (Reading database ... 12981 files and directories currently installed.) Preparing to unpack .../libc-bin_2.33-0ubuntu5_amd64.deb ... Unpacking libc-bin (2.33-0ubuntu5) over (2.32-0ubuntu3) ... Setting up libc-bin (2.33-0ubuntu5) ... Selecting previously unselected package gcc-11-base:amd64. (Reading database ... 12981 files and directories currently installed.) Preparing to unpack .../gcc-11-base_11-20210404-1ubuntu1_amd64.deb ... Unpacking gcc-11-base:amd64 (11-20210404-1ubuntu1) ... Setting up gcc-11-base:amd64 (11-20210404-1ubuntu1) ... (Reading database ... 12986 files and directories currently installed.) Preparing to unpack .../libgcc-s1_11-20210404-1ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Setting up libgcc-s1:amd64 (11-20210404-1ubuntu1) ... (Reading database ... 12986 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu18_amd64.deb ... Unpacking base-files (11ubuntu18) over (11ubuntu14) ... Setting up base-files (11ubuntu18) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12986 files and directories currently installed.) Preparing to unpack .../bash_5.1-2ubuntu1_amd64.deb ... Unpacking bash (5.1-2ubuntu1) over (5.0-6ubuntu2) ... Setting up bash (5.1-2ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12986 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.36.1-7ubuntu2_amd64.deb ... Unpacking bsdutils (1:2.36.1-7ubuntu2) over (1:2.36-3ubuntu1) ... Setting up bsdutils (1:2.36.1-7ubuntu2) ... (Reading database ... 12986 files and directories currently installed.) Preparing to unpack .../coreutils_8.32-4ubuntu2_amd64.deb ... Unpacking coreutils (8.32-4ubuntu2) over (8.32-3ubuntu1) ... Setting up coreutils (8.32-4ubuntu2) ... (Reading database ... 12986 files and directories currently installed.) Preparing to unpack .../tar_1.34+dfsg-1build1_amd64.deb ... Unpacking tar (1.34+dfsg-1build1) over (1.30+dfsg-7) ... Setting up tar (1.34+dfsg-1build1) ... (Reading database ... 12986 files and directories currently installed.) Preparing to unpack .../dpkg_1.20.7.1ubuntu4_amd64.deb ... Unpacking dpkg (1.20.7.1ubuntu4) over (1.20.5ubuntu2) ... Setting up dpkg (1.20.7.1ubuntu4) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 13000 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1_amd64.deb ... Unpacking dash (0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1) over (0.5.10.2-7) ... Setting up dash (0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1) ... (Reading database ... 13000 files and directories currently installed.) Preparing to unpack .../findutils_4.8.0-1ubuntu1_amd64.deb ... Unpacking findutils (4.8.0-1ubuntu1) over (4.7.0-1ubuntu2) ... Setting up findutils (4.8.0-1ubuntu1) ... (Reading database ... 13000 files and directories currently installed.) Preparing to unpack .../archives/grep_3.6-1_amd64.deb ... Unpacking grep (3.6-1) over (3.4-1) ... Setting up grep (3.6-1) ... (Reading database ... 13001 files and directories currently installed.) Preparing to unpack .../gzip_1.10-2ubuntu3_amd64.deb ... Unpacking gzip (1.10-2ubuntu3) over (1.10-2ubuntu1) ... Setting up gzip (1.10-2ubuntu3) ... (Reading database ... 13001 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu8_amd64.deb ... Unpacking login (1:4.8.1-1ubuntu8) over (1:4.8.1-1ubuntu6) ... Setting up login (1:4.8.1-1ubuntu8) ... Installing new version of config file /etc/login.defs ... (Reading database ... 13001 files and directories currently installed.) Preparing to unpack .../libncurses6_6.2+20201114-2build1_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2build1) over (6.2-1) ... Preparing to unpack .../libncursesw6_6.2+20201114-2build1_amd64.deb ... Unpacking libncursesw6:amd64 (6.2+20201114-2build1) over (6.2-1) ... Preparing to unpack .../libtinfo6_6.2+20201114-2build1_amd64.deb ... Unpacking libtinfo6:amd64 (6.2+20201114-2build1) over (6.2-1) ... Setting up libtinfo6:amd64 (6.2+20201114-2build1) ... (Reading database ... 13001 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2+20201114-2build1_amd64.deb ... Unpacking ncurses-bin (6.2+20201114-2build1) over (6.2-1) ... Setting up ncurses-bin (6.2+20201114-2build1) ... (Reading database ... 13001 files and directories currently installed.) Preparing to unpack .../perl_5.32.1-3ubuntu2_amd64.deb ... Unpacking perl (5.32.1-3ubuntu2) over (5.30.3-4) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../perl-modules-5.32_5.32.1-3ubuntu2_all.deb ... Unpacking perl-modules-5.32 (5.32.1-3ubuntu2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../libperl5.32_5.32.1-3ubuntu2_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-3ubuntu2) ... Preparing to unpack .../perl-base_5.32.1-3ubuntu2_amd64.deb ... Unpacking perl-base (5.32.1-3ubuntu2) over (5.30.3-4) ... Setting up perl-base (5.32.1-3ubuntu2) ... (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-4ubuntu3_amd64.deb ... Unpacking bzip2 (1.0.8-4ubuntu3) over (1.0.8-4ubuntu2) ... Preparing to unpack .../libbz2-1.0_1.0.8-4ubuntu3_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-4ubuntu3) over (1.0.8-4ubuntu2) ... Setting up libbz2-1.0:amd64 (1.0.8-4ubuntu3) ... (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../libdb5.3_5.3.28+dfsg1-0.6ubuntu4_amd64.deb ... Unpacking libdb5.3:amd64 (5.3.28+dfsg1-0.6ubuntu4) over (5.3.28+dfsg1-0.6ubuntu3) ... Setting up libdb5.3:amd64 (5.3.28+dfsg1-0.6ubuntu4) ... (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../libgdbm6_1.19-2_amd64.deb ... Unpacking libgdbm6:amd64 (1.19-2) over (1.18.1-5.1) ... Preparing to unpack .../libgdbm-compat4_1.19-2_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.19-2) over (1.18.1-5.1) ... Preparing to unpack .../zlib1g_1%3a1.2.11.dfsg-2ubuntu6_amd64.deb ... Unpacking zlib1g:amd64 (1:1.2.11.dfsg-2ubuntu6) over (1:1.2.11.dfsg-2ubuntu4) ... Setting up zlib1g:amd64 (1:1.2.11.dfsg-2ubuntu6) ... (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../util-linux_2.36.1-7ubuntu2_amd64.deb ... Unpacking util-linux (2.36.1-7ubuntu2) over (2.36-3ubuntu1) ... Setting up util-linux (2.36.1-7ubuntu2) ... Installing new version of config file /etc/init.d/hwclock.sh ... (Reading database ... 14923 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.256ubuntu3_amd64.deb ... Unpacking libdebconfclient0:amd64 (0.256ubuntu3) over (0.252ubuntu1) ... Setting up libdebconfclient0:amd64 (0.256ubuntu3) ... (Reading database ... 14923 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.49_amd64.deb ... Unpacking base-passwd (3.5.49) over (3.5.47) ... Setting up base-passwd (3.5.49) ... Changing home-directory of irc from /var/run/ircd to /run/ircd 1 changes have been made, rewriting files Writing passwd-file to /etc/passwd Writing shadow-file to /etc/shadow Writing group-file to /etc/group (Reading database ... 14923 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.60_all.deb ... Unpacking init-system-helpers (1.60) over (1.58) ... Setting up init-system-helpers (1.60) ... (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2+20201114-2build1_all.deb ... Unpacking ncurses-base (6.2+20201114-2build1) over (6.2-1) ... Setting up ncurses-base (6.2+20201114-2build1) ... (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_2.96-6ubuntu1_amd64.deb ... Unpacking sysvinit-utils (2.96-6ubuntu1) over (2.96-3ubuntu1) ... Setting up sysvinit-utils (2.96-6ubuntu1) ... Selecting previously unselected package libxxhash0:amd64. (Reading database ... 14922 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.0-2_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.0-2) ... Setting up libxxhash0:amd64 (0.8.0-2) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.38-2build1_amd64.deb ... Unpacking libgpg-error0:amd64 (1.38-2build1) over (1.38-2) ... Setting up libgpg-error0:amd64 (1.38-2build1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.8.7-2ubuntu2_amd64.deb ... Unpacking libgcrypt20:amd64 (1.8.7-2ubuntu2) over (1.8.5-5ubuntu2) ... Setting up libgcrypt20:amd64 (1.8.7-2ubuntu2) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.3-1build1_amd64.deb ... Unpacking liblz4-1:amd64 (1.9.3-1build1) over (1.9.2-2) ... Setting up liblz4-1:amd64 (1.9.3-1build1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.5-1.0build2_amd64.deb ... Unpacking liblzma5:amd64 (5.2.5-1.0build2) over (5.2.4-1ubuntu1) ... Setting up liblzma5:amd64 (5.2.5-1.0build2) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libstdc++6_11-20210404-1ubuntu1_amd64.deb ... Unpacking libstdc++6:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Setting up libstdc++6:amd64 (11-20210404-1ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.2.1+dfsg-1ubuntu2_amd64.deb ... Unpacking libgmp10:amd64 (2:6.2.1+dfsg-1ubuntu2) over (2:6.2.0+dfsg-6ubuntu1) ... Setting up libgmp10:amd64 (2:6.2.1+dfsg-1ubuntu2) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libnettle8_3.7-2.1_amd64.deb ... Unpacking libnettle8:amd64 (3.7-2.1) over (3.6-2) ... Setting up libnettle8:amd64 (3.7-2.1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libhogweed6_3.7-2.1_amd64.deb ... Unpacking libhogweed6:amd64 (3.7-2.1) over (3.6-2) ... Setting up libhogweed6:amd64 (3.7-2.1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.0-5_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.0-5) over (2.3.0-1) ... Setting up libidn2-0:amd64 (2.3.0-5) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5_amd64.deb ... Unpacking libffi8ubuntu1:amd64 (3.4~20200819gead65ca871-0ubuntu5) over (3.4~20200819gead65ca871-0ubuntu3) ... Setting up libffi8ubuntu1:amd64 (3.4~20200819gead65ca871-0ubuntu5) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.23.22-1_amd64.deb ... Unpacking libp11-kit0:amd64 (0.23.22-1) over (0.23.21-2build1) ... Setting up libp11-kit0:amd64 (0.23.22-1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.7.0-5ubuntu1_amd64.deb ... Unpacking libgnutls30:amd64 (3.7.0-5ubuntu1) over (3.6.15-4ubuntu2) ... Setting up libgnutls30:amd64 (3.7.0-5ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../systemd-sysv_247.3-3ubuntu3_amd64.deb ... Unpacking systemd-sysv (247.3-3ubuntu3) over (246.6-1ubuntu1) ... Preparing to unpack .../libaudit-common_1%3a3.0-2ubuntu1_all.deb ... Unpacking libaudit-common (1:3.0-2ubuntu1) over (1:2.8.5-3ubuntu1) ... Setting up libaudit-common (1:3.0-2ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.7.9-2.2build1_amd64.deb ... Unpacking libcap-ng0:amd64 (0.7.9-2.2build1) over (0.7.9-2.2) ... Setting up libcap-ng0:amd64 (0.7.9-2.2build1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.0-2ubuntu1_amd64.deb ... Unpacking libaudit1:amd64 (1:3.0-2ubuntu1) over (1:2.8.5-3ubuntu1) ... Setting up libaudit1:amd64 (1:3.0-2ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.36-2ubuntu5_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.36-2ubuntu5) over (10.34-7) ... Setting up libpcre2-8-0:amd64 (10.36-2ubuntu5) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libselinux1_3.1-3build1_amd64.deb ... Unpacking libselinux1:amd64 (3.1-3build1) over (3.1-2) ... Setting up libselinux1:amd64 (3.1-3build1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.1-1ubuntu1_all.deb ... Unpacking libsemanage-common (3.1-1ubuntu1) over (3.1-1) ... Setting up libsemanage-common (3.1-1ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libsemanage1_3.1-1ubuntu1_amd64.deb ... Unpacking libsemanage1:amd64 (3.1-1ubuntu1) over (3.1-1) ... Setting up libsemanage1:amd64 (3.1-1ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libsepol1_3.1-1ubuntu1_amd64.deb ... Unpacking libsepol1:amd64 (3.1-1ubuntu1) over (3.1-1) ... Setting up libsepol1:amd64 (3.1-1ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-1ubuntu8_amd64.deb ... Unpacking passwd (1:4.8.1-1ubuntu8) over (1:4.8.1-1ubuntu6) ... Setting up passwd (1:4.8.1-1ubuntu8) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../adduser_3.118ubuntu5_all.deb ... Unpacking adduser (3.118ubuntu5) over (3.118ubuntu2) ... Setting up adduser (3.118ubuntu5) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../systemd-timesyncd_247.3-3ubuntu3_amd64.deb ... Unpacking systemd-timesyncd (247.3-3ubuntu3) over (246.6-1ubuntu1) ... Preparing to unpack .../libacl1_2.2.53-10ubuntu1_amd64.deb ... Unpacking libacl1:amd64 (2.2.53-10ubuntu1) over (2.2.53-8) ... Setting up libacl1:amd64 (2.2.53-10ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.0.0-0ubuntu7_amd64.deb ... Unpacking libapparmor1:amd64 (3.0.0-0ubuntu7) over (3.0.0-0ubuntu1) ... Preparing to unpack .../libargon2-1_0~20171227-0.2build21.04.0_amd64.deb ... Unpacking libargon2-1:amd64 (0~20171227-0.2build21.04.0) over (0~20171227-0.2build20.10.0) ... Preparing to unpack .../libblkid1_2.36.1-7ubuntu2_amd64.deb ... Unpacking libblkid1:amd64 (2.36.1-7ubuntu2) over (2.36-3ubuntu1) ... Setting up libblkid1:amd64 (2.36.1-7ubuntu2) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libudev1_247.3-3ubuntu3_amd64.deb ... Unpacking libudev1:amd64 (247.3-3ubuntu3) over (246.6-1ubuntu1) ... Setting up libudev1:amd64 (247.3-3ubuntu3) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.175-2ubuntu4_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.175-2ubuntu4) over (2:1.02.167-1ubuntu3) ... Preparing to unpack .../libjson-c5_0.15-2build2_amd64.deb ... Unpacking libjson-c5:amd64 (0.15-2build2) over (0.15-1) ... Preparing to unpack .../libuuid1_2.36.1-7ubuntu2_amd64.deb ... Unpacking libuuid1:amd64 (2.36.1-7ubuntu2) over (2.36-3ubuntu1) ... Setting up libuuid1:amd64 (2.36.1-7ubuntu2) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libcryptsetup12_2%3a2.3.4-1ubuntu3_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.3.4-1ubuntu3) over (2:2.3.3-1ubuntu6) ... Preparing to unpack .../libip4tc2_1.8.7-1ubuntu2_amd64.deb ... Unpacking libip4tc2:amd64 (1.8.7-1ubuntu2) over (1.8.5-3ubuntu1) ... Preparing to unpack .../libkmod2_28-1ubuntu2_amd64.deb ... Unpacking libkmod2:amd64 (28-1ubuntu2) over (27+20200310-2ubuntu1) ... Preparing to unpack .../libmount1_2.36.1-7ubuntu2_amd64.deb ... Unpacking libmount1:amd64 (2.36.1-7ubuntu2) over (2.36-3ubuntu1) ... Setting up libmount1:amd64 (2.36.1-7ubuntu2) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.1-1ubuntu1_amd64.deb ... Unpacking libseccomp2:amd64 (2.5.1-1ubuntu1) over (2.4.3-1ubuntu4) ... Setting up libseccomp2:amd64 (2.5.1-1ubuntu1) ... (Reading database ... 14927 files and directories currently installed.) Preparing to unpack .../mount_2.36.1-7ubuntu2_amd64.deb ... Unpacking mount (2.36.1-7ubuntu2) over (2.36-3ubuntu1) ... Preparing to unpack .../systemd_247.3-3ubuntu3_amd64.deb ... Unpacking systemd (247.3-3ubuntu3) over (246.6-1ubuntu1) ... Preparing to unpack .../libsystemd0_247.3-3ubuntu3_amd64.deb ... Unpacking libsystemd0:amd64 (247.3-3ubuntu3) over (246.6-1ubuntu1) ... Setting up libsystemd0:amd64 (247.3-3ubuntu3) ... (Reading database ... 14937 files and directories currently installed.) Preparing to unpack .../libzstd1_1.4.8+dfsg-2build2_amd64.deb ... Unpacking libzstd1:amd64 (1.4.8+dfsg-2build2) over (1.4.5+dfsg-4) ... Setting up libzstd1:amd64 (1.4.8+dfsg-2build2) ... (Reading database ... 14937 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.2.2ubuntu1_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.2.2ubuntu1) over (2.1.10) ... Setting up libapt-pkg6.0:amd64 (2.2.2ubuntu1) ... (Reading database ... 14937 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.20-1ubuntu3_amd64.deb ... Unpacking gpgv (2.2.20-1ubuntu3) over (2.2.20-1ubuntu1) ... Setting up gpgv (2.2.20-1ubuntu3) ... (Reading database ... 14937 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2021.03.26_all.deb ... Unpacking ubuntu-keyring (2021.03.26) over (2020.06.17.1) ... Setting up ubuntu-keyring (2021.03.26) ... (Reading database ... 14937 files and directories currently installed.) Preparing to unpack .../apt_2.2.2ubuntu1_amd64.deb ... Unpacking apt (2.2.2ubuntu1) over (2.1.10) ... Setting up apt (2.2.2ubuntu1) ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... (Reading database ... 14941 files and directories currently installed.) Preparing to unpack .../logsave_1.45.7-1ubuntu2_amd64.deb ... Unpacking logsave (1.45.7-1ubuntu2) over (1.45.6-1ubuntu1) ... Preparing to unpack .../libext2fs2_1.45.7-1ubuntu2_amd64.deb ... Unpacking libext2fs2:amd64 (1.45.7-1ubuntu2) over (1.45.6-1ubuntu1) ... Setting up libcom-err2:amd64 (1.45.7-1ubuntu2) ... Setting up libext2fs2:amd64 (1.45.7-1ubuntu2) ... (Reading database ... 14941 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.45.7-1ubuntu2_amd64.deb ... Unpacking e2fsprogs (1.45.7-1ubuntu2) over (1.45.6-1ubuntu1) ... Setting up libapparmor1:amd64 (3.0.0-0ubuntu7) ... Setting up libargon2-1:amd64 (0~20171227-0.2build21.04.0) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.175-2ubuntu4) ... Setting up libjson-c5:amd64 (0.15-2build2) ... Setting up libssl1.1:amd64 (1.1.1j-1ubuntu3) ... Setting up libcryptsetup12:amd64 (2:2.3.4-1ubuntu3) ... Setting up libip4tc2:amd64 (1.8.7-1ubuntu2) ... Setting up libkmod2:amd64 (28-1ubuntu2) ... Setting up mount (2.36.1-7ubuntu2) ... Setting up systemd-timesyncd (247.3-3ubuntu3) ... Setting up systemd (247.3-3ubuntu3) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... Initializing machine ID from random generator. Removing obsolete conffile /etc/pam.d/systemd-user ... Setting up systemd-sysv (247.3-3ubuntu3) ... (Reading database ... 14941 files and directories currently installed.) Preparing to unpack .../archives/init_1.60_amd64.deb ... Unpacking init (1.60) over (1.58) ... Preparing to unpack .../libattr1_1%3a2.4.48-6build1_amd64.deb ... Unpacking libattr1:amd64 (1:2.4.48-6build1) over (1:2.4.48-5) ... Setting up libattr1:amd64 (1:2.4.48-6build1) ... (Reading database ... 14941 files and directories currently installed.) Preparing to unpack .../libpcre3_2%3a8.39-13build3_amd64.deb ... Unpacking libpcre3:amd64 (2:8.39-13build3) over (2:8.39-13) ... Setting up libpcre3:amd64 (2:8.39-13build3) ... (Reading database ... 14941 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.36.1-7ubuntu2_amd64.deb ... Unpacking libsmartcols1:amd64 (2.36.1-7ubuntu2) over (2.36-3ubuntu1) ... Setting up libsmartcols1:amd64 (2.36.1-7ubuntu2) ... (Reading database ... 14941 files and directories currently installed.) Preparing to unpack .../00-libgomp1_11-20210404-1ubuntu1_amd64.deb ... Unpacking libgomp1:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../01-libitm1_11-20210404-1ubuntu1_amd64.deb ... Unpacking libitm1:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../02-libatomic1_11-20210404-1ubuntu1_amd64.deb ... Unpacking libatomic1:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../03-libasan6_11-20210404-1ubuntu1_amd64.deb ... Unpacking libasan6:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../04-liblsan0_11-20210404-1ubuntu1_amd64.deb ... Unpacking liblsan0:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../05-libtsan0_11-20210404-1ubuntu1_amd64.deb ... Unpacking libtsan0:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../06-libubsan1_11-20210404-1ubuntu1_amd64.deb ... Unpacking libubsan1:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../07-libquadmath0_11-20210404-1ubuntu1_amd64.deb ... Unpacking libquadmath0:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../08-g++-10_10.2.1-24ubuntu1_amd64.deb ... Unpacking g++-10 (10.2.1-24ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../09-gcc-10_10.2.1-24ubuntu1_amd64.deb ... Unpacking gcc-10 (10.2.1-24ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../10-libstdc++-10-dev_10.2.1-24ubuntu1_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.1-24ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../11-libgcc-10-dev_10.2.1-24ubuntu1_amd64.deb ... Unpacking libgcc-10-dev:amd64 (10.2.1-24ubuntu1) over (10.2.0-13ubuntu1) ... Selecting previously unselected package libisl23:amd64. Preparing to unpack .../12-libisl23_0.23-1build1_amd64.deb ... Unpacking libisl23:amd64 (0.23-1build1) ... Preparing to unpack .../13-libmpfr6_4.1.0-3build1_amd64.deb ... Unpacking libmpfr6:amd64 (4.1.0-3build1) over (4.1.0-3) ... Preparing to unpack .../14-libmpc3_1.2.0-1build1_amd64.deb ... Unpacking libmpc3:amd64 (1.2.0-1build1) over (1.2.0~rc1-1) ... Preparing to unpack .../15-libcc1-0_11-20210404-1ubuntu1_amd64.deb ... Unpacking libcc1-0:amd64 (11-20210404-1ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../16-libctf0_2.36.1-6ubuntu1_amd64.deb ... Unpacking libctf0:amd64 (2.36.1-6ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../17-libctf-nobfd0_2.36.1-6ubuntu1_amd64.deb ... Unpacking libctf-nobfd0:amd64 (2.36.1-6ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../18-binutils-x86-64-linux-gnu_2.36.1-6ubuntu1_amd64.deb ... Unpacking binutils-x86-64-linux-gnu (2.36.1-6ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../19-libbinutils_2.36.1-6ubuntu1_amd64.deb ... Unpacking libbinutils:amd64 (2.36.1-6ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../20-binutils_2.36.1-6ubuntu1_amd64.deb ... Unpacking binutils (2.36.1-6ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../21-binutils-common_2.36.1-6ubuntu1_amd64.deb ... Unpacking binutils-common:amd64 (2.36.1-6ubuntu1) over (2.35.1-1ubuntu1) ... Preparing to unpack .../22-cpp-10_10.2.1-24ubuntu1_amd64.deb ... Unpacking cpp-10 (10.2.1-24ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../23-gcc-10-base_10.2.1-24ubuntu1_amd64.deb ... Unpacking gcc-10-base:amd64 (10.2.1-24ubuntu1) over (10.2.0-13ubuntu1) ... Preparing to unpack .../24-libprocps8_2%3a3.3.16-5ubuntu3_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.16-5ubuntu3) over (2:3.3.16-5ubuntu2) ... Preparing to unpack .../25-libss2_1.45.7-1ubuntu2_amd64.deb ... Unpacking libss2:amd64 (1.45.7-1ubuntu2) over (1.45.6-1ubuntu1) ... Preparing to unpack .../26-procps_2%3a3.3.16-5ubuntu3_amd64.deb ... Unpacking procps (2:3.3.16-5ubuntu3) over (2:3.3.16-5ubuntu2) ... Preparing to unpack .../27-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) over (0.0.13) ... Preparing to unpack .../28-openssl_1.1.1j-1ubuntu3_amd64.deb ... Unpacking openssl (1.1.1j-1ubuntu3) over (1.1.1f-1ubuntu4) ... Preparing to unpack .../29-ca-certificates_20210119build1_all.deb ... Unpacking ca-certificates (20210119build1) over (20200601) ... Preparing to unpack .../30-libcap2_1%3a2.44-1build1_amd64.deb ... Unpacking libcap2:amd64 (1:2.44-1build1) over (1:2.43-1) ... Preparing to unpack .../31-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) over (8.0-4) ... Preparing to unpack .../32-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) over (8.0-4) ... Preparing to unpack .../33-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) over (3.33.0-1) ... Preparing to unpack .../34-tzdata_2021a-1ubuntu1_all.deb ... Unpacking tzdata (2021a-1ubuntu1) over (2020b-1ubuntu1) ... Preparing to unpack .../35-xz-utils_5.2.5-1.0build2_amd64.deb ... Unpacking xz-utils (5.2.5-1.0build2) over (5.2.4-1ubuntu1) ... Preparing to unpack .../36-libpng16-16_1.6.37-3build3_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.37-3build3) over (1.6.37-3) ... Preparing to unpack .../37-dpkg-dev_1.20.7.1ubuntu4_all.deb ... Unpacking dpkg-dev (1.20.7.1ubuntu4) over (1.20.5ubuntu2) ... Preparing to unpack .../38-libdpkg-perl_1.20.7.1ubuntu4_all.deb ... Unpacking libdpkg-perl (1.20.7.1ubuntu4) over (1.20.5ubuntu2) ... Preparing to unpack .../39-patch_2.7.6-7_amd64.deb ... Unpacking patch (2.7.6-7) over (2.7.6-6) ... Selecting previously unselected package lto-disabled-list. Preparing to unpack .../40-lto-disabled-list_6_all.deb ... Unpacking lto-disabled-list (6) ... Preparing to unpack .../41-libassuan0_2.5.4-1ubuntu1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.4-1ubuntu1) over (2.5.3-7.1) ... Preparing to unpack .../42-libnpth0_1.6-3_amd64.deb ... Unpacking libnpth0:amd64 (1.6-3) over (1.6-2) ... Preparing to unpack .../43-gpg_2.2.20-1ubuntu3_amd64.deb ... Unpacking gpg (2.2.20-1ubuntu3) over (2.2.20-1ubuntu1) ... Preparing to unpack .../44-gpgconf_2.2.20-1ubuntu3_amd64.deb ... Unpacking gpgconf (2.2.20-1ubuntu3) over (2.2.20-1ubuntu1) ... Preparing to unpack .../45-gpg-agent_2.2.20-1ubuntu3_amd64.deb ... Unpacking gpg-agent (2.2.20-1ubuntu3) over (2.2.20-1ubuntu1) ... Preparing to unpack .../46-liblockfile-bin_1.17-1_amd64.deb ... Unpacking liblockfile-bin (1.17-1) over (1.16-1.1) ... Preparing to unpack .../47-liblockfile1_1.17-1_amd64.deb ... Unpacking liblockfile1:amd64 (1.17-1) over (1.16-1.1) ... Preparing to unpack .../48-pkgbinarymangler_147_all.deb ... Unpacking pkgbinarymangler (147) over (146) ... Setting up lto-disabled-list (6) ... Setting up liblockfile-bin (1.17-1) ... Setting up pkgbinarymangler (147) ... Setting up init (1.60) ... Setting up libtirpc-common (1.3.1-1build1) ... Setting up perl-modules-5.32 (5.32.1-3ubuntu2) ... Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up binutils-common:amd64 (2.36.1-6ubuntu1) ... Setting up linux-libc-dev:amd64 (5.11.0-13.14) ... Setting up libctf-nobfd0:amd64 (2.36.1-6ubuntu1) ... Setting up libnpth0:amd64 (1.6-3) ... Setting up libassuan0:amd64 (2.5.4-1ubuntu1) ... Setting up libgomp1:amd64 (11-20210404-1ubuntu1) ... Setting up bzip2 (1.0.8-4ubuntu3) ... Setting up libcap2:amd64 (1:2.44-1build1) ... Setting up libfakeroot:amd64 (1.25.3-1.1ubuntu2) ... Setting up libasan6:amd64 (11-20210404-1ubuntu1) ... Setting up libkrb5support0:amd64 (1.18.3-4) ... Setting up tzdata (2021a-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Apr 8 11:05:34 UTC 2021. Universal Time is now: Thu Apr 8 11:05:34 UTC 2021. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.25.3-1.1ubuntu2) ... Setting up gcc-10-base:amd64 (10.2.1-24ubuntu1) ... Setting up libmpfr6:amd64 (4.1.0-3build1) ... Setting up libncurses6:amd64 (6.2+20201114-2build1) ... Setting up xz-utils (5.2.5-1.0build2) ... Setting up libquadmath0:amd64 (11-20210404-1ubuntu1) ... Setting up libpng16-16:amd64 (1.6.37-3build3) ... Setting up libmpc3:amd64 (1.2.0-1build1) ... Setting up libatomic1:amd64 (11-20210404-1ubuntu1) ... Setting up patch (2.7.6-7) ... Setting up libss2:amd64 (1.45.7-1ubuntu2) ... Setting up libncursesw6:amd64 (6.2+20201114-2build1) ... Setting up libk5crypto3:amd64 (1.18.3-4) ... Setting up logsave (1.45.7-1ubuntu2) ... Setting up libubsan1:amd64 (11-20210404-1ubuntu1) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1ubuntu3) ... Setting up libkrb5-3:amd64 (1.18.3-4) ... Setting up liblockfile1:amd64 (1.17-1) ... Setting up libbinutils:amd64 (2.36.1-6ubuntu1) ... Setting up libisl23:amd64 (0.23-1build1) ... Setting up libc-dev-bin (2.33-0ubuntu5) ... Setting up openssl (1.1.1j-1ubuntu3) ... Setting up readline-common (8.1-1) ... Setting up libcc1-0:amd64 (11-20210404-1ubuntu1) ... Setting up liblsan0:amd64 (11-20210404-1ubuntu1) ... Setting up libprocps8:amd64 (2:3.3.16-5ubuntu3) ... Setting up cpp-10 (10.2.1-24ubuntu1) ... Setting up libitm1:amd64 (11-20210404-1ubuntu1) ... Setting up libgdbm6:amd64 (1.19-2) ... Setting up libtsan0:amd64 (11-20210404-1ubuntu1) ... Setting up libctf0:amd64 (2.36.1-6ubuntu1) ... Setting up libgcc-10-dev:amd64 (10.2.1-24ubuntu1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up e2fsprogs (1.45.7-1ubuntu2) ... Setting up ca-certificates (20210119build1) ... Updating certificates in /etc/ssl/certs... 10 added, 7 removed; done. Setting up libgssapi-krb5-2:amd64 (1.18.3-4) ... Setting up libgdbm-compat4:amd64 (1.19-2) ... Setting up libperl5.32:amd64 (5.32.1-3ubuntu2) ... Setting up procps (2:3.3.16-5ubuntu3) ... Setting up gpgconf (2.2.20-1ubuntu3) ... Setting up gpg (2.2.20-1ubuntu3) ... Setting up binutils-x86-64-linux-gnu (2.36.1-6ubuntu1) ... Setting up libtirpc3:amd64 (1.3.1-1build1) ... Setting up gpg-agent (2.2.20-1ubuntu3) ... Setting up binutils (2.36.1-6ubuntu1) ... Setting up perl (5.32.1-3ubuntu2) ... Setting up libtirpc-dev:amd64 (1.3.1-1build1) ... Setting up gcc-10 (10.2.1-24ubuntu1) ... Setting up libdpkg-perl (1.20.7.1ubuntu4) ... Setting up libc6-dev:amd64 (2.33-0ubuntu5) ... Setting up libstdc++-10-dev:amd64 (10.2.1-24ubuntu1) ... Setting up g++-10 (10.2.1-24ubuntu1) ... Setting up dpkg-dev (1.20.7.1ubuntu4) ... Processing triggers for libc-bin (2.33-0ubuntu5) ... Processing triggers for ca-certificates (20210119build1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20937648 amd64 hirsute-proposed -c chroot:build-PACKAGEBUILD-20937648 --arch=amd64 --dist=hirsute-proposed --nolog -A bcbio_1.2.5-1.dsc Initiating build PACKAGEBUILD-20937648 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-140-generic #144-Ubuntu SMP Fri Mar 19 14:12:35 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lgw01-amd64-056.buildd +==============================================================================+ | bcbio 1.2.5-1 (amd64) Thu, 08 Apr 2021 11:05:38 +0000 | +==============================================================================+ Package: bcbio Version: 1.2.5-1 Source Version: 1.2.5-1 Distribution: hirsute-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20937648/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bcbio_1.2.5-1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/bcbio-9tN93X/bcbio-1.2.5' with '<>' I: NOTICE: Log filtering will replace 'build/bcbio-9tN93X' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-LQWdnK/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-LQWdnK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LQWdnK/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-LQWdnK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LQWdnK/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-LQWdnK/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (133 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-LQWdnK/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14993 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-gffutils, python3-mock, python3-pandas, python3-pybedtools, python3-pysam, python3-pyvcf, python3-toolz, python3-tornado, python3-yaml, python3-scipy, python3-psutil, python3-joblib, atropos, bcftools, bedtools, biobambam2, bowtie2, cnvkit, fastqc, freebayes, gffread, grabix, gsort, hisat2, hts-nim-tools, libfreetype6, lumpy-sv, mosdepth, multiqc, perl, libpicard-java, libvcflib-tools, picard-tools, python3-biopython, python3-cyvcf2, python3-geneimpacts, python3-logbook, python3-nose, python3-requests, python3-pytest, python3-pytest-mock, python3-seqcluster, pythonpy, rapmap, rna-star, r-other-wasabi, r-bioc-htsfilter, r-bioc-degreport, r-bioc-purecn, r-cran-tidyverse, r-bioc-titancna, r-bioc-tximport, salmon, samblaster, samtools, seqan-apps, seqtk, subread, tabix, tophat-recondition, umis, vcfanno, vt, wham-align, xonsh, python3-sphinx Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-gffutils, python3-mock, python3-pandas, python3-pybedtools, python3-pysam, python3-pyvcf, python3-toolz, python3-tornado, python3-yaml, python3-scipy, python3-psutil, python3-joblib, atropos, bcftools, bedtools, biobambam2, bowtie2, cnvkit, fastqc, freebayes, gffread, grabix, gsort, hisat2, hts-nim-tools, libfreetype6, lumpy-sv, mosdepth, multiqc, perl, libpicard-java, libvcflib-tools, picard-tools, python3-biopython, python3-cyvcf2, python3-geneimpacts, python3-logbook, python3-nose, python3-requests, python3-pytest, python3-pytest-mock, python3-seqcluster, pythonpy, rapmap, rna-star, r-other-wasabi, r-bioc-htsfilter, r-bioc-degreport, r-bioc-purecn, r-cran-tidyverse, r-bioc-titancna, r-bioc-tximport, salmon, samblaster, samtools, seqan-apps, seqtk, subread, tabix, tophat-recondition, umis, vcfanno, vt, wham-align, xonsh, python3-sphinx dpkg-deb: building package 'sbuild-build-depends-bcbio-dummy' in '/<>/resolver-LQWdnK/apt_archive/sbuild-build-depends-bcbio-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-bcbio-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-LQWdnK/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LQWdnK/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-LQWdnK/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LQWdnK/apt_archive ./ Sources [936 B] Get:5 copy:/<>/resolver-LQWdnK/apt_archive ./ Packages [974 B] Fetched 2873 B in 0s (205 kB/s) Reading package lists... Reading package lists... Install bcbio build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libisl22 libperl5.30 perl-modules-5.30 Use 'apt autoremove' to remove them. The following additional packages will be installed: ant ant-optional atropos autoconf automake autopoint autotools-dev bamkit bcftools bedtools biobambam2 bowtie2 bsdextrautils ca-certificates-java cnvkit cython3 debhelper debugedit default-jre default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz fastqc file fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx fonts-mathjax freebayes gettext gettext-base gffread grabix groff-base gsort hisat2 hts-nim-tools intltool-debian java-common libactivation-java libaec0 libaopalliance-java libapache-pom-java libarchive-zip-perl libargs4j-java libasn1-8-heimdal libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbarclay-java libblas3 libblosc1 libboost-dev libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost1.74-dev libbrotli1 libbsd0 libc-ares2 libcairo2 libcdi-api-java libcmark-gfm-extensions0 libcmark-gfm0 libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcups2 libcurl3-gnutls libcurl4 libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdisorder0 libdivsufsort3 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libdw1 libedit2 libelf1 libexpat1 libfastahack0 libfastinfoset-java libfile-stripnondeterminism-perl libfindbin-libs-perl libfml0 libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgatk-native-bindings-java libgclib2 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran5 libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgpgme11 libgraphite2-3 libgssapi3-heimdal libguava-java libguice-java libgzstream0 libharfbuzz0b libhcrypto4-heimdal libhdf5-103-1 libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libhx509-5-heimdal libice6 libicu67 libimagequant0 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjbzip2-java libjemalloc2 libjoptsimple-java libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjs-underscore libjsoncpp24 libjsoup-java libjsr305-java libkrb5-26-heimdal liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblightcouch-java libllvm11 liblog4j2-java libmagic-mgc libmagic1 libmaus2-2 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmd0 libmongodb-java libmpdec3 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnode72 libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libpicard-java libpipeline1 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libseqlib2 libsigsegv2 libsis-base-java libsis-base-jni libsis-jhdf5-java libsis-jhdf5-jni libsisu-inject-java libsisu-plexus-java libslf4j-java libsm6 libsmithwaterman0 libsnappy-java libsnappy-jni libsnappy1v5 libssh-4 libssw0 libstaden-read14 libstax-ex-java libstreambuffer-java libsub-override-perl libsz2 libtabixpp0 libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libtxw2-java libuchardet0 libuv1 libvcflib-tools libvcflib1 libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxss1 libxt6 libxtst6 libxxf86vm1 libxz-java libyaml-0-2 littler lumpy-sv m4 mailcap man-db media-types mime-support mosdepth multiqc nim nim-hts-dev node-highlight.js node-html5shiv node-normalize.css nodejs openjdk-11-jre openjdk-11-jre-headless pandoc pandoc-data picard-tools po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-argcomplete python3-argh python3-attr python3-babel python3-biopython python3-certifi python3-chardet python3-click python3-colorama python3-coloredlogs python3-colorlog python3-colormath python3-commonmark python3-cycler python3-cyvcf2 python3-dateutil python3-decorator python3-distutils python3-docutils python3-future python3-geneimpacts python3-gffutils python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-logbook python3-lzstring python3-markdown python3-markupsafe python3-matplotlib python3-minimal python3-mirtop python3-mock python3-more-itertools python3-networkx python3-nose python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pbr python3-pil python3-pkg-resources python3-pluggy python3-ply python3-pomegranate python3-progressbar python3-psutil python3-py python3-pybedtools python3-pyfaidx python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pytest-mock python3-recommonmark python3-regex python3-reportlab python3-reportlab-accel python3-requests python3-roman python3-scipy python3-seqcluster python3-setuptools python3-simplejson python3-six python3-sklearn python3-sklearn-lib python3-snowballstemmer python3-spectra python3-sphinx python3-threadpoolctl python3-toml python3-toolz python3-tornado python3-tz python3-urllib3 python3-vcf python3-yaml python3-zipp python3.9 python3.9-minimal pythonpy r-base-core r-bioc-all r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-complexheatmap r-bioc-consensusclusterplus r-bioc-degreport r-bioc-delayedarray r-bioc-deseq2 r-bioc-dnacopy r-bioc-edger r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-htsfilter r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-titancna r-bioc-tximport r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-broom r-cran-cachem r-cran-cairo r-cran-callr r-cran-cellranger r-cran-circlize r-cran-cli r-cran-clipr r-cran-clue r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-forcats r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-getoptlong r-cran-ggdendro r-cran-ggplot2 r-cran-ggrepel r-cran-globaloptions r-cran-glue r-cran-gridbase r-cran-gridextra r-cran-gtable r-cran-haven r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-iterators r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lasso2 r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-logging r-cran-lubridate r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-mnormt r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nozzle.r1 r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-psych r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-readr r-cran-readxl r-cran-rematch r-cran-rematch2 r-cran-reprex r-cran-reshape r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-rvest r-cran-scales r-cran-selectr r-cran-shape r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tidyverse r-cran-tinytex r-cran-tmvnsim r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml r-other-wasabi rapmap rna-star salmon samblaster samtools seqan-apps seqtk sgml-base sphinx-common sphinx-rtd-theme-common subread tabix tophat-recondition ttf-bitstream-vera ucf umis unzip vcfanno vt wham-align x11-common xdg-utils xml-core xonsh zip zlib1g-dev Suggested packages: ant-doc default-jdk | java-compiler | java-sdk antlr javacc junit junit4 jython libbcel-java libbsf-java libcommons-net-java libmail-java libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java libregexp-java libxalan2-java autoconf-archive gnu-standards autoconf-doc texlive-latex-recommended bowtie2-examples cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libaopalliance-java-doc libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libel-api-java libcommons-io-java-doc libcommons-lang3-java-doc libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java cups-common libdom4j-java-doc libmsv-java libxpp2-java libxpp3-java libjdom1-java librhino-java libgoogle-gson-java-doc libasm-java libcglib-java libxom-java libjoptsimple-java-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc libjsoup-java-doc libjsr305-java-doc liblcms2-utils libgeronimo-jms-1.1-spec-java libmaven-file-management-java-doc libmaven-shared-io-java-doc libmaven-shared-utils-java-doc liblogback-java pciutils pcscd libplexus-classworlds-java-doc libplexus-sec-dispatcher-java-doc libplexus-utils2-java-doc lm-sensors testng tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk r-cran-pracma libxml-commons-resolver1.1-java-doc m4-doc apparmor less www-browser nim-doc nim-hts-examples npm libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc php python ruby node-katex citation-style-language-styles libmail-box-perl python3-doc python3-tk python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-renderpm python3-psycopg2 raxml t-coffee wise w3-dtd-mathml python-cycler-doc docutils-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base python-future-doc python-jinja2-doc python-logbook-doc python-markdown-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip texlive-extra-utils ttf-staypuft python-mock-doc python-networkx-doc python3-gdal python3-pydot python3-pygraphviz python-nose-doc gfortran python-numpy-doc python3-dev python3-numpy-dbg python-pandas-doc python3-statsmodels python-pil-doc python3-pil-dbg python-ply-doc python-pomegranate-doc python-psutil-doc subversion python-pybedtools-doc python-pygments-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python3-cryptography python3-openssl python3-socks python-requests-doc python-scipy-doc seqcluster python-setuptools-doc python3-dap python-sklearn-doc python3-stemmer fonts-freefont-otf imagemagick-6.q16 latexmk python3-sphinx-rtd-theme sphinx-doc texlive-fonts-recommended texlive-plain-generic python-toolz-doc python3-pycurl python-tornado-doc python3-twisted python3.9-venv python3.9-doc binfmt-support bash-completion elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rpart r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-bioc-affy r-cran-bbmisc r-bioc-shortread r-cran-biocmanager r-cran-jpeg r-cran-tiff r-cran-fastcluster r-cran-grimport2 r-cran-pheatmap r-cran-statmod r-bioc-hdf5array r-bioc-delayedmatrixstats r-cran-pbapply r-bioc-ensembldb r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-edaseq r-cran-biasedurn r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats r-cran-pscbs r-cran-covr r-cran-optparse r-cran-tinytest r-cran-roxygen2 r-cran-aer r-cran-bbmle r-cran-boot r-cran-car r-cran-caret r-cran-cmprsk r-cran-coda r-cran-e1071 r-cran-emmeans r-cran-epir r-cran-gam r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm r-cran-hmisc r-cran-irlba r-cran-ks r-cran-lavaan r-cran-leaps r-cran-lme4 r-cran-lmtest r-cran-lsmeans r-cran-maps r-cran-maptools r-cran-mclust r-cran-metafor r-cran-modeldata r-cran-multcomp r-cran-network r-cran-nnet r-cran-ordinal r-cran-plm r-cran-quantreg r-cran-robust r-cran-robustbase r-cran-rsample r-cran-sandwich r-cran-sp r-cran-spdep r-cran-spatialreg r-cran-survey r-cran-systemfit r-cran-tseries r-cran-zoo r-cran-dendextend r-cran-htmlwidgets r-cran-prettycode r-cran-lpsolve r-cran-quadprog r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-viridis r-cran-gridgraphics r-cran-magick r-cran-patchwork r-cran-ragg r-cran-venndiagram r-cran-bench r-cran-r.utils r-cran-xts r-cran-rmysql r-cran-rpostgresql r-cran-unitizer r-cran-sf r-cran-svglite r-cran-devtools r-cran-ggbeeswarm r-cran-rgl r-cran-webshot r-cran-reticulate r-cran-getopt r-cran-interp r-cran-doparallel r-cran-itertools r-cran-inline r-cran-miniui r-cran-sessioninfo r-cran-tufte r-cran-dygraphs r-cran-rsconnect r-cran-gh r-cran-dichromat r-cran-rmpi r-cran-rsprng r-cran-rlecuyer r-cran-mockery r-cran-usethis r-cran-formattable r-cran-zeallot r-cran-remotes cwltool cwltool | cwl-runner sgml-base-doc tophat2 umis-examples xonsh-doc python3-pyperclip Recommended packages: python3-dev parallel curl | wget | lynx python3-hisat2 alsa-ucm-conf alsa-topology-conf dbus libarchive-cpio-perl libgkl-jni libglib2.0-data shared-mime-info xdg-user-dirs dirmngr gpg-wks-client gpgsm javascript-common libldap-common libjansi-java publicsuffix libsasl2-modules libltdl-dev mesa-vulkan-drivers | vulkan-icd sambamba node-clipboard libjs-filesaver git libhts-dev nodejs-doc libatk-wrapper-java-jni fonts-dejavu-extra libmail-sendmail-perl python-biopython-doc ncbi-blast+ snpeff python3-tk python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4 python3-html5lib python3-lxml python3-tables python3-numba python3-olefile python3-renderpm mirtop python3-cutadapt python3-dateutils r-cran-devtools r-cran-gplots r-cran-gtools r-cran-pheatmap vienna-rna r-recommended r-base-dev r-doc-html r-bioc-go.db r-cran-runit r-cran-batchjobs r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-biovizbase r-cran-dendextend r-cran-gridtext r-bioc-glmgampoi r-cran-statmod r-cran-class r-bioc-shortread r-bioc-org.hs.eg.db r-bioc-biocstyle r-bioc-snpstats r-cran-cliapp r-cran-mockery r-cran-vdiffr r-cran-decor r-cran-webutils r-cran-rmysql r-cran-rpostgresql r-cran-testit r-cran-covr r-cran-sp r-cran-mapproj r-cran-hexbin r-cran-quantreg r-cran-tikzdevice r-cran-sodium r-cran-domc r-cran-abind r-cran-future r-cran-sem r-cran-gparotation r-cran-psychtools r-cran-lavaan r-cran-mockr r-cran-dbitest r-cran-dygraphs r-cran-htmlwidgets libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils python3-prompt-toolkit python3-setproctitle The following NEW packages will be installed: ant ant-optional atropos autoconf automake autopoint autotools-dev bamkit bcftools bedtools biobambam2 bowtie2 bsdextrautils ca-certificates-java cnvkit cython3 debhelper debugedit default-jre default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz fastqc file fontconfig fontconfig-config fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx fonts-mathjax freebayes gettext gettext-base gffread grabix groff-base gsort hisat2 hts-nim-tools intltool-debian java-common libactivation-java libaec0 libaopalliance-java libapache-pom-java libarchive-zip-perl libargs4j-java libasn1-8-heimdal libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libbamtools2.5.1 libbarclay-java libblas3 libblosc1 libboost-dev libboost-filesystem1.74.0 libboost-iostreams1.74.0 libboost-program-options1.74.0 libboost1.74-dev libbrotli1 libbsd0 libc-ares2 libcairo2 libcdi-api-java libcmark-gfm-extensions0 libcmark-gfm0 libcodemodel-java libcommons-cli-java libcommons-codec-java libcommons-compress-java libcommons-io-java libcommons-jexl2-java libcommons-lang3-java libcommons-logging-java libcommons-math3-java libcommons-parent-java libcups2 libcurl3-gnutls libcurl4 libdatrie1 libdbus-1-3 libdebhelper-perl libdeflate0 libdisorder0 libdivsufsort3 libdom4j-java libdrm-amdgpu1 libdrm-common libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libdtd-parser-java libdw1 libedit2 libelf1 libexpat1 libfastahack0 libfastinfoset-java libfile-stripnondeterminism-perl libfindbin-libs-perl libfml0 libfontconfig1 libfreemarker-java libfreetype6 libfribidi0 libgatk-native-bindings-java libgclib2 libgeronimo-annotation-1.3-spec-java libgeronimo-interceptor-3.0-spec-java libgfortran5 libgif7 libgkl-java libgl1 libgl1-mesa-dri libglapi-mesa libglib2.0-0 libglvnd0 libglx-mesa0 libglx0 libgoogle-gson-java libgpgme11 libgraphite2-3 libgssapi3-heimdal libguava-java libguice-java libgzstream0 libharfbuzz0b libhcrypto4-heimdal libhdf5-103-1 libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhtscodecs2 libhtsjdk-java libhttpclient-java libhttpcore-java libhx509-5-heimdal libice6 libicu67 libimagequant0 libistack-commons-java libjaxb-api-java libjaxb-java libjaxen-java libjbig0 libjbzip2-java libjemalloc2 libjoptsimple-java libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-jquery-metadata libjs-jquery-selectize.js libjs-jquery-tablesorter libjs-jquery-ui libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-prettify libjs-sifter.js libjs-sphinxdoc libjs-twitter-bootstrap-datepicker libjs-underscore libjsoncpp24 libjsoup-java libjsr305-java libkrb5-26-heimdal liblapack3 liblbfgsb0 liblcms2-2 libldap-2.4-2 liblightcouch-java libllvm11 liblog4j2-java libmagic-mgc libmagic1 libmaus2-2 libmaven-file-management-java libmaven-parent-java libmaven-resolver-java libmaven-shared-io-java libmaven-shared-utils-java libmaven3-core-java libmd0 libmongodb-java libmpdec3 libnghttp2-14 libngs-java libngs-sdk-dev libngs-sdk2 libnode72 libnspr4 libnss3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 libpcsclite1 libpicard-java libpipeline1 libpixman-1-0 libplexus-archiver-java libplexus-cipher-java libplexus-classworlds-java libplexus-component-annotations-java libplexus-interpolation-java libplexus-io-java libplexus-sec-dispatcher-java libplexus-utils2-java libpsl5 libpython3-stdlib libpython3.9-minimal libpython3.9-stdlib librelaxng-datatype-java librngom-java libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5 libseqlib2 libsigsegv2 libsis-base-java libsis-base-jni libsis-jhdf5-java libsis-jhdf5-jni libsisu-inject-java libsisu-plexus-java libslf4j-java libsm6 libsmithwaterman0 libsnappy-java libsnappy-jni libsnappy1v5 libssh-4 libssw0 libstaden-read14 libstax-ex-java libstreambuffer-java libsub-override-perl libsz2 libtabixpp0 libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libtxw2-java libuchardet0 libuv1 libvcflib-tools libvcflib1 libvulkan1 libwagon-http-java libwagon-provider-api-java libwebp6 libwebpdemux2 libwebpmux3 libwind0-heimdal libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxcb1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxml-commons-resolver1.1-java libxml2 libxrender1 libxshmfence1 libxsom-java libxss1 libxt6 libxtst6 libxxf86vm1 libxz-java libyaml-0-2 littler lumpy-sv m4 mailcap man-db media-types mime-support mosdepth multiqc nim nim-hts-dev node-highlight.js node-html5shiv node-normalize.css nodejs openjdk-11-jre openjdk-11-jre-headless pandoc pandoc-data picard-tools po-debconf python-babel-localedata python-matplotlib-data python3 python3-alabaster python3-all python3-argcomplete python3-argh python3-attr python3-babel python3-biopython python3-certifi python3-chardet python3-click python3-colorama python3-coloredlogs python3-colorlog python3-colormath python3-commonmark python3-cycler python3-cyvcf2 python3-dateutil python3-decorator python3-distutils python3-docutils python3-future python3-geneimpacts python3-gffutils python3-humanfriendly python3-idna python3-imagesize python3-importlib-metadata python3-iniconfig python3-jinja2 python3-joblib python3-kiwisolver python3-lib2to3 python3-logbook python3-lzstring python3-markdown python3-markupsafe python3-matplotlib python3-minimal python3-mirtop python3-mock python3-more-itertools python3-networkx python3-nose python3-numpy python3-packaging python3-pandas python3-pandas-lib python3-pbr python3-pil python3-pkg-resources python3-pluggy python3-ply python3-pomegranate python3-progressbar python3-psutil python3-py python3-pybedtools python3-pyfaidx python3-pygments python3-pyparsing python3-pysam python3-pytest python3-pytest-mock python3-recommonmark python3-regex python3-reportlab python3-reportlab-accel python3-requests python3-roman python3-scipy python3-seqcluster python3-setuptools python3-simplejson python3-six python3-sklearn python3-sklearn-lib python3-snowballstemmer python3-spectra python3-sphinx python3-threadpoolctl python3-toml python3-toolz python3-tornado python3-tz python3-urllib3 python3-vcf python3-yaml python3-zipp python3.9 python3.9-minimal pythonpy r-base-core r-bioc-all r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-complexheatmap r-bioc-consensusclusterplus r-bioc-degreport r-bioc-delayedarray r-bioc-deseq2 r-bioc-dnacopy r-bioc-edger r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-htsfilter r-bioc-iranges r-bioc-limma r-bioc-matrixgenerics r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-titancna r-bioc-tximport r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-brio r-cran-broom r-cran-cachem r-cran-cairo r-cran-callr r-cran-cellranger r-cran-circlize r-cran-cli r-cran-clipr r-cran-clue r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cowplot r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap r-cran-forcats r-cran-foreach r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-getoptlong r-cran-ggdendro r-cran-ggplot2 r-cran-ggrepel r-cran-globaloptions r-cran-glue r-cran-gridbase r-cran-gridextra r-cran-gtable r-cran-haven r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-iterators r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-lasso2 r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-logging r-cran-lubridate r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-mnormt r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nozzle.r1 r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-psych r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-readr r-cran-readxl r-cran-rematch r-cran-rematch2 r-cran-reprex r-cran-reshape r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-rvest r-cran-scales r-cran-selectr r-cran-shape r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tidyverse r-cran-tinytex r-cran-tmvnsim r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml r-other-wasabi rapmap rna-star salmon samblaster samtools sbuild-build-depends-bcbio-dummy seqan-apps seqtk sgml-base sphinx-common sphinx-rtd-theme-common subread tabix tophat-recondition ttf-bitstream-vera ucf umis unzip vcfanno vt wham-align x11-common xdg-utils xml-core xonsh zip zlib1g-dev 0 upgraded, 647 newly installed, 0 to remove and 0 not upgraded. Need to get 555 MB of archives. After this operation, 2033 MB of additional disk space will be used. Get:1 copy:/<>/resolver-LQWdnK/apt_archive ./ sbuild-build-depends-bcbio-dummy 0.invalid.0 [1260 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.9-minimal amd64 3.9.4-1 [755 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main amd64 libexpat1 amd64 2.2.10-2 [76.2 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3.9-minimal amd64 3.9.4-1 [1914 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-minimal amd64 3.9.4-1 [23.7 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main amd64 media-types all 4.0.0 [22.2 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main amd64 mailcap all 3.68ubuntu1 [24.1 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 mime-support all 3.66 [3696 B] Get:9 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmpdec3 amd64 2.5.1-2 [79.8 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.9-stdlib amd64 3.9.4-1 [1687 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3.9 amd64 3.9.4-1 [420 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpython3-stdlib amd64 3.9.4-1 [6984 B] Get:13 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3 amd64 3.9.4-1 [22.2 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main amd64 bsdextrautils amd64 2.36.1-7ubuntu2 [81.6 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/main amd64 groff-base amd64 1.22.4-6 [864 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main amd64 man-db amd64 2.9.4-2 [1154 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main amd64 fonts-lato all 2.0-2.1 [2696 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/universe amd64 node-normalize.css all 8.0.1-3 [10.3 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main amd64 sgml-base all 1.30 [12.5 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic-mgc amd64 1:5.39-3 [228 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic1 amd64 1:5.39-3 [80.6 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main amd64 file amd64 1:5.39-3 [23.7 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmd0 amd64 1.0.3-3build1 [21.5 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbsd0 amd64 0.11.3-1ubuntu2 [41.1 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdbus-1-3 amd64 1.12.20-1ubuntu3 [183 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main amd64 libelf1 amd64 0.183-6 [47.3 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfribidi0 amd64 1.0.8-2ubuntu1 [23.8 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libglib2.0-0 amd64 2.68.0-1 [1303 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main amd64 libicu67 amd64 67.1-6ubuntu2 [8619 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxml2 amd64 2.9.10+dfsg-6.3build2 [697 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main amd64 libyaml-0-2 amd64 0.2.2-1 [48.9 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-pkg-resources all 52.0.0-3 [129 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-yaml amd64 5.3.1-3build1 [132 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main amd64 ucf all 3.0043 [56.1 kB] Get:37 http://ftpmaster.internal/ubuntu hirsute/main amd64 gettext-base amd64 0.21-3ubuntu2 [39.5 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdrm-common all 2.4.104-1build1 [5632 B] Get:39 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdrm2 amd64 2.4.104-1build1 [32.1 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main amd64 libedit2 amd64 3.1-20191231-2 [87.8 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpsl5 amd64 0.21.0-1.2 [53.5 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuv1 amd64 1.40.0-1 [81.6 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxau6 amd64 1:1.0.9-1build3 [7360 B] Get:44 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxdmcp6 amd64 1:1.1.3-0ubuntu3 [10.3 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb1 amd64 1.14-3ubuntu1 [45.3 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main amd64 libx11-data all 2:1.7.0-2build2 [112 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/main amd64 libx11-6 amd64 2:1.7.0-2build2 [575 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxext6 amd64 2:1.3.4-0ubuntu3 [28.9 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnspr4 amd64 2:4.29-1 [106 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libnss3 amd64 2:3.63-1ubuntu1 [1270 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main amd64 ca-certificates-java all 20190909 [12.1 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/main amd64 java-common all 0.72 [6816 B] Get:53 http://ftpmaster.internal/ubuntu hirsute/main amd64 libavahi-common-data amd64 0.8-5ubuntu2 [25.1 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/main amd64 libavahi-common3 amd64 0.8-5ubuntu2 [22.1 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/main amd64 libavahi-client3 amd64 0.8-5ubuntu2 [25.8 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcups2 amd64 2.3.3op2-3ubuntu3 [234 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblcms2-2 amd64 2.12~rc1-2 [143 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg-turbo8 amd64 2.0.6-0ubuntu2 [117 kB] Get:59 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:60 http://ftpmaster.internal/ubuntu hirsute/main amd64 libbrotli1 amd64 1.0.9-2build2 [274 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfreetype6 amd64 2.10.4+dfsg-1build1 [348 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/universe amd64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get:63 http://ftpmaster.internal/ubuntu hirsute/main amd64 fontconfig-config all 2.13.1-4.2ubuntu3 [28.2 kB] Get:64 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfontconfig1 amd64 2.13.1-4.2ubuntu3 [116 kB] Get:65 http://ftpmaster.internal/ubuntu hirsute/main amd64 libasound2-data all 1.2.4-1.1ubuntu2 [18.8 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/main amd64 libasound2 amd64 1.2.4-1.1ubuntu2 [335 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgraphite2-3 amd64 1.3.14-1 [73.7 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main amd64 libharfbuzz0b amd64 2.7.4-1ubuntu1 [345 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpcsclite1 amd64 1.9.1-1 [22.7 kB] Get:70 http://ftpmaster.internal/ubuntu hirsute/main amd64 openjdk-11-jre-headless amd64 11.0.11+8-0ubuntu2 [37.2 MB] Get:71 http://ftpmaster.internal/ubuntu hirsute/main amd64 default-jre-headless amd64 2:1.11-72 [3192 B] Get:72 http://ftpmaster.internal/ubuntu hirsute/universe amd64 ant all 1.10.9-3 [2108 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute/universe amd64 ant-optional all 1.10.9-3 [370 kB] Get:74 http://ftpmaster.internal/ubuntu hirsute/universe amd64 cython3 amd64 0.29.21-1ubuntu3 [1267 kB] Get:75 http://ftpmaster.internal/ubuntu hirsute/main amd64 libroken18-heimdal amd64 7.7.0+dfsg-2 [41.8 kB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main amd64 libasn1-8-heimdal amd64 7.7.0+dfsg-2 [181 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/main amd64 libheimbase1-heimdal amd64 7.7.0+dfsg-2 [29.7 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhcrypto4-heimdal amd64 7.7.0+dfsg-2 [88.0 kB] Get:79 http://ftpmaster.internal/ubuntu hirsute/main amd64 libwind0-heimdal amd64 7.7.0+dfsg-2 [47.6 kB] Get:80 http://ftpmaster.internal/ubuntu hirsute/main amd64 libhx509-5-heimdal amd64 7.7.0+dfsg-2 [107 kB] Get:81 http://ftpmaster.internal/ubuntu hirsute/main amd64 libkrb5-26-heimdal amd64 7.7.0+dfsg-2 [207 kB] Get:82 http://ftpmaster.internal/ubuntu hirsute/main amd64 libheimntlm0-heimdal amd64 7.7.0+dfsg-2 [15.1 kB] Get:83 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgssapi3-heimdal amd64 7.7.0+dfsg-2 [96.5 kB] Get:84 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2ubuntu1 [14.7 kB] Get:85 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2ubuntu1 [49.3 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-2ubuntu1 [156 kB] Get:87 http://ftpmaster.internal/ubuntu hirsute/main amd64 libnghttp2-14 amd64 1.43.0-1 [72.5 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build2 [55.0 kB] Get:89 http://ftpmaster.internal/ubuntu hirsute/main amd64 libssh-4 amd64 0.9.5-1 [172 kB] Get:90 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libcurl3-gnutls amd64 7.74.0-1ubuntu2 [247 kB] Get:91 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdeflate0 amd64 1.7-1ubuntu1 [52.6 kB] Get:92 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhts3 amd64 1.11-4 [353 kB] Get:93 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pysam amd64 0.15.4+ds-3build2 [1530 kB] Get:94 http://ftpmaster.internal/ubuntu hirsute/universe amd64 atropos amd64 1.1.29+dfsg-1 [193 kB] Get:95 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsigsegv2 amd64 2.13-1ubuntu1 [14.2 kB] Get:96 http://ftpmaster.internal/ubuntu hirsute/main amd64 m4 amd64 1.4.18-5 [200 kB] Get:97 http://ftpmaster.internal/ubuntu hirsute/main amd64 autoconf all 2.69-14 [293 kB] Get:98 http://ftpmaster.internal/ubuntu hirsute/main amd64 autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:99 http://ftpmaster.internal/ubuntu hirsute/main amd64 automake all 1:1.16.3-2ubuntu1 [552 kB] Get:100 http://ftpmaster.internal/ubuntu hirsute/main amd64 autopoint all 0.21-3ubuntu2 [422 kB] Get:101 http://ftpmaster.internal/ubuntu hirsute/universe amd64 bamkit all 0.0.1+git20170413.ccd079d-2 [13.8 kB] Get:102 http://ftpmaster.internal/ubuntu hirsute/universe amd64 bcftools amd64 1.11-1 [618 kB] Get:103 http://ftpmaster.internal/ubuntu hirsute/universe amd64 bedtools amd64 2.30.0+dfsg-1 [661 kB] Get:104 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgpgme11 amd64 1.14.0-1ubuntu3 [122 kB] Get:105 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libmaus2-2 amd64 2.0.768+dfsg-1 [1557 kB] Get:106 http://ftpmaster.internal/ubuntu hirsute/universe amd64 biobambam2 amd64 2.0.179+ds-1 [9442 kB] Get:107 http://ftpmaster.internal/ubuntu hirsute/main amd64 libblas3 amd64 3.9.0-3ubuntu2 [199 kB] Get:108 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgfortran5 amd64 11-20210404-1ubuntu1 [717 kB] Get:109 http://ftpmaster.internal/ubuntu hirsute/main amd64 liblapack3 amd64 3.9.0-3ubuntu2 [2255 kB] Get:110 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-numpy amd64 1:1.19.5-1ubuntu2 [2680 kB] Get:111 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-reportlab-accel amd64 3.5.66-1 [18.8 kB] Get:112 http://ftpmaster.internal/ubuntu hirsute/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] Get:113 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjbig0 amd64 2.1-3.1build1 [26.7 kB] Get:114 http://ftpmaster.internal/ubuntu hirsute/main amd64 libwebp6 amd64 0.6.1-2 [185 kB] Get:115 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtiff5 amd64 4.2.0-1build1 [168 kB] Get:116 http://ftpmaster.internal/ubuntu hirsute/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] Get:117 http://ftpmaster.internal/ubuntu hirsute/main amd64 libwebpmux3 amd64 0.6.1-2 [19.6 kB] Get:118 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-pil amd64 8.1.2-1 [380 kB] Get:119 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-reportlab all 3.5.66-1 [542 kB] Get:120 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-biopython amd64 1.78+dfsg-4ubuntu1 [1397 kB] Get:121 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [314 kB] Get:122 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-8 [231 kB] Get:123 http://ftpmaster.internal/ubuntu hirsute/universe amd64 fonts-lyx all 2.3.6-1 [159 kB] Get:124 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python-matplotlib-data all 3.3.4-1 [3803 kB] Get:125 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-six all 1.15.0-2 [12.0 kB] Get:126 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-dateutil all 2.8.1-5 [79.8 kB] Get:127 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-pyparsing all 2.4.7-1 [61.4 kB] Get:128 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-cycler all 0.10.0-3 [8132 B] Get:129 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-kiwisolver amd64 1.3.1-1build1 [54.9 kB] Get:130 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-matplotlib amd64 3.3.4-1 [3384 kB] Get:131 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-tz all 2021.1-1 [31.7 kB] Get:132 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pandas-lib amd64 1.1.5+dfsg-2 [3272 kB] Get:133 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pandas all 1.1.5+dfsg-2 [2077 kB] Get:134 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-joblib all 0.17.0-2 [200 kB] Get:135 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] Get:136 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-networkx all 2.4-4ubuntu1 [855 kB] Get:137 http://ftpmaster.internal/ubuntu hirsute/universe amd64 liblbfgsb0 amd64 3.0+dfsg.3-9 [28.5 kB] Get:138 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-scipy amd64 1.6.0-2 [12.3 MB] Get:139 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pomegranate amd64 0.13.5-1 [2481 kB] Get:140 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pyfaidx all 0.5.9.2-1 [26.4 kB] Get:141 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-sklearn-lib amd64 0.23.2-5ubuntu2 [1869 kB] Get:142 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-threadpoolctl all 2.1.0-1 [15.1 kB] Get:143 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-sklearn all 0.23.2-5ubuntu2 [1805 kB] Get:144 http://ftpmaster.internal/ubuntu hirsute/main amd64 zip amd64 3.0-12 [162 kB] Get:145 http://ftpmaster.internal/ubuntu hirsute/main amd64 unzip amd64 6.0-26ubuntu1 [168 kB] Get:146 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpaper1 amd64 1.1.28 [13.0 kB] Get:147 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpaper-utils amd64 1.1.28 [8400 B] Get:148 http://ftpmaster.internal/ubuntu hirsute/main amd64 xdg-utils all 1.1.3-2ubuntu2 [61.5 kB] Get:149 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpixman-1-0 amd64 0.40.0-1build2 [236 kB] Get:150 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-render0 amd64 1.14-3ubuntu1 [14.8 kB] Get:151 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-shm0 amd64 1.14-3ubuntu1 [5588 B] Get:152 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxrender1 amd64 1:0.9.10-1build2 [18.5 kB] Get:153 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcairo2 amd64 1.16.0-5ubuntu1 [589 kB] Get:154 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libcurl4 amd64 7.74.0-1ubuntu2 [251 kB] Get:155 http://ftpmaster.internal/ubuntu hirsute/main amd64 fontconfig amd64 2.13.1-4.2ubuntu3 [171 kB] Get:156 http://ftpmaster.internal/ubuntu hirsute/main amd64 libthai-data all 0.1.28-4 [134 kB] Get:157 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdatrie1 amd64 0.2.13-1ubuntu2 [19.4 kB] Get:158 http://ftpmaster.internal/ubuntu hirsute/main amd64 libthai0 amd64 0.1.28-4 [18.0 kB] Get:159 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpango-1.0-0 amd64 1.48.2-1build2 [169 kB] Get:160 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpangoft2-1.0-0 amd64 1.48.2-1build2 [36.9 kB] Get:161 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpangocairo-1.0-0 amd64 1.48.2-1build2 [25.2 kB] Get:162 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtcl8.6 amd64 8.6.11+dfsg-1 [913 kB] Get:163 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxft2 amd64 2.3.3-0ubuntu3 [38.9 kB] Get:164 http://ftpmaster.internal/ubuntu hirsute/main amd64 x11-common all 1:7.7+22ubuntu1 [22.3 kB] Get:165 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxss1 amd64 1:1.2.3-1 [8140 B] Get:166 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtk8.6 amd64 8.6.11-2 [721 kB] Get:167 http://ftpmaster.internal/ubuntu hirsute/main amd64 libice6 amd64 2:1.0.10-1 [40.2 kB] Get:168 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsm6 amd64 2:1.2.3-1 [16.1 kB] Get:169 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxt6 amd64 1:1.2.0-1 [160 kB] Get:170 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-base-core amd64 4.0.4-1build1 [25.1 MB] Get:171 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-biocgenerics all 0.36.0-1 [646 kB] Get:172 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-dnacopy amd64 1.64.0-1 [419 kB] Get:173 http://ftpmaster.internal/ubuntu hirsute/universe amd64 cnvkit amd64 0.9.8-1 [15.4 MB] Get:174 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdebhelper-perl all 13.3.4ubuntu1 [61.1 kB] Get:175 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtool all 2.4.6-15 [161 kB] Get:176 http://ftpmaster.internal/ubuntu hirsute/main amd64 dh-autoreconf all 20 [16.1 kB] Get:177 http://ftpmaster.internal/ubuntu hirsute/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:178 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:179 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfile-stripnondeterminism-perl all 1.11.0-1 [17.0 kB] Get:180 http://ftpmaster.internal/ubuntu hirsute/main amd64 dh-strip-nondeterminism all 1.11.0-1 [5236 B] Get:181 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdw1 amd64 0.183-6 [225 kB] Get:182 http://ftpmaster.internal/ubuntu hirsute/main amd64 debugedit amd64 1:0.1-0ubuntu2 [39.7 kB] Get:183 http://ftpmaster.internal/ubuntu hirsute/main amd64 dwz amd64 0.14-1 [98.1 kB] Get:184 http://ftpmaster.internal/ubuntu hirsute/main amd64 gettext amd64 0.21-3ubuntu2 [825 kB] Get:185 http://ftpmaster.internal/ubuntu hirsute/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:186 http://ftpmaster.internal/ubuntu hirsute/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] Get:187 http://ftpmaster.internal/ubuntu hirsute/main amd64 debhelper all 13.3.4ubuntu1 [920 kB] Get:188 http://ftpmaster.internal/ubuntu hirsute/main amd64 libglvnd0 amd64 1.3.2-1 [51.8 kB] Get:189 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libglapi-mesa amd64 21.0.1-2 [26.6 kB] Get:190 http://ftpmaster.internal/ubuntu hirsute/main amd64 libx11-xcb1 amd64 2:1.7.0-2build2 [7604 B] Get:191 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-dri2-0 amd64 1.14-3ubuntu1 [6924 B] Get:192 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-dri3-0 amd64 1.14-3ubuntu1 [6720 B] Get:193 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-glx0 amd64 1.14-3ubuntu1 [22.3 kB] Get:194 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-present0 amd64 1.14-3ubuntu1 [5556 B] Get:195 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-sync1 amd64 1.14-3ubuntu1 [8900 B] Get:196 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxcb-xfixes0 amd64 1.14-3ubuntu1 [9288 B] Get:197 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxfixes3 amd64 1:5.0.3-2build1 [10.7 kB] Get:198 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxshmfence1 amd64 1.3-1build2 [5168 B] Get:199 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxxf86vm1 amd64 1:1.1.4-1build1 [10.2 kB] Get:200 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdrm-amdgpu1 amd64 2.4.104-1build1 [18.4 kB] Get:201 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpciaccess0 amd64 0.16-1build2 [18.0 kB] Get:202 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdrm-intel1 amd64 2.4.104-1build1 [61.5 kB] Get:203 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdrm-nouveau2 amd64 2.4.104-1build1 [16.4 kB] Get:204 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdrm-radeon1 amd64 2.4.104-1build1 [19.9 kB] Get:205 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libllvm11 amd64 1:11.0.1-2ubuntu2 [17.8 MB] Get:206 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsensors-config all 1:3.6.0-7 [5708 B] Get:207 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsensors5 amd64 1:3.6.0-7 [25.8 kB] Get:208 http://ftpmaster.internal/ubuntu hirsute/main amd64 libvulkan1 amd64 1.2.162.0-1 [97.2 kB] Get:209 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libgl1-mesa-dri amd64 21.0.1-2 [10.4 MB] Get:210 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libglx-mesa0 amd64 21.0.1-2 [139 kB] Get:211 http://ftpmaster.internal/ubuntu hirsute/main amd64 libglx0 amd64 1.3.2-1 [34.0 kB] Get:212 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgl1 amd64 1.3.2-1 [87.3 kB] Get:213 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgif7 amd64 5.1.9-2 [32.6 kB] Get:214 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxi6 amd64 2:1.7.10-1build2 [29.7 kB] Get:215 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxtst6 amd64 2:1.2.3-1build2 [13.0 kB] Get:216 http://ftpmaster.internal/ubuntu hirsute/main amd64 openjdk-11-jre amd64 11.0.11+8-0ubuntu2 [176 kB] Get:217 http://ftpmaster.internal/ubuntu hirsute/main amd64 default-jre amd64 2:1.11-72 [1084 B] Get:218 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-lib2to3 all 3.9.4-0ubuntu1 [76.1 kB] Get:219 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-distutils all 3.9.4-0ubuntu1 [140 kB] Get:220 http://ftpmaster.internal/ubuntu hirsute/universe amd64 dh-python all 4.20201102ubuntu4 [92.0 kB] Get:221 http://ftpmaster.internal/ubuntu hirsute/main amd64 xml-core all 0.18+nmu1 [21.6 kB] Get:222 http://ftpmaster.internal/ubuntu hirsute/main amd64 docutils-common all 0.16+dfsg-3 [116 kB] Get:223 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-math3-java all 3.6.1-3 [2016 kB] Get:224 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjbzip2-java all 0.9.1-5 [42.6 kB] Get:225 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libapache-pom-java all 18-1 [4720 B] Get:226 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-parent-java all 43-1 [10.8 kB] Get:227 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-compress-java all 1.20-1 [556 kB] Get:228 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-logging-java all 1.2-2 [60.3 kB] Get:229 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-jexl2-java all 2.1.1-5 [251 kB] Get:230 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libactivation-java all 1.2.0-2 [84.7 kB] Get:231 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libargs4j-java all 2.33-1.1 [137 kB] Get:232 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjaxen-java all 1.1.6-4 [214 kB] Get:233 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libdom4j-java all 2.1.3-1 [309 kB] Get:234 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-io-java all 2.8.0-1 [261 kB] Get:235 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libmaven-shared-utils-java all 3.3.0-1 [149 kB] Get:236 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] Get:237 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-cli-java all 1.4-2 [55.8 kB] Get:238 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-lang3-java all 3.11-1 [526 kB] Get:239 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.2 kB] Get:240 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libaopalliance-java all 20070526-6 [9084 B] Get:241 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjsr305-java all 0.1~+svn49-11 [27.0 kB] Get:242 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libguava-java all 29.0-6 [2418 kB] Get:243 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libguice-java all 4.2.3-2 [1434 kB] Get:244 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libmaven-parent-java all 31-2 [5140 B] Get:245 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libplexus-utils2-java all 3.3.0-1 [250 kB] Get:246 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libwagon-provider-api-java all 3.3.4-1 [48.5 kB] Get:247 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libmaven-resolver-java all 1.4.2-3build1 [555 kB] Get:248 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libplexus-cipher-java all 1.8-2 [15.1 kB] Get:249 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libplexus-classworlds-java all 2.6.0-1 [49.4 kB] Get:250 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libplexus-component-annotations-java all 2.1.0-1 [6564 B] Get:251 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get:252 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libplexus-sec-dispatcher-java all 1.4-4 [28.1 kB] Get:253 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4fakesync [8616 B] Get:254 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcdi-api-java all 1.2-3 [54.3 kB] Get:255 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libslf4j-java all 1.7.30-1 [141 kB] Get:256 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsisu-inject-java all 0.3.4-2 [347 kB] Get:257 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsisu-plexus-java all 0.3.4-3 [181 kB] Get:258 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libmaven3-core-java all 3.6.3-5 [1535 kB] Get:259 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libmaven-shared-io-java all 3.0.0-3 [33.3 kB] Get:260 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get:261 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libplexus-io-java all 3.2.0-1.1 [64.8 kB] Get:262 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] Get:263 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsnappy-jni amd64 1.1.8.3-1 [6756 B] Get:264 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsnappy-java all 1.1.8.3-1 [93.9 kB] Get:265 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libxz-java all 1.8-2 [140 kB] Get:266 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libplexus-archiver-java all 3.6.0-2 [171 kB] Get:267 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhttpcore-java all 4.4.14-1 [610 kB] Get:268 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcommons-codec-java all 1.15-1 [291 kB] Get:269 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhttpclient-java all 4.5.13-1 [1225 kB] Get:270 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjsoup-java all 1.10.2-2 [337 kB] Get:271 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libwagon-http-java all 3.3.4-1 [51.1 kB] Get:272 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libistack-commons-java all 3.0.6-5 [145 kB] Get:273 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcodemodel-java all 2.6+jaxb2.3.0.1-10 [163 kB] Get:274 http://ftpmaster.internal/ubuntu hirsute/universe amd64 librelaxng-datatype-java all 1.0+ds1-3.1 [11.8 kB] Get:275 http://ftpmaster.internal/ubuntu hirsute/universe amd64 librngom-java all 2.3.0.1-10 [288 kB] Get:276 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libxsom-java all 2.3.0.1-10 [396 kB] Get:277 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libtxw2-java all 2.3.0.1-10 [132 kB] Get:278 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libxml-commons-resolver1.1-java all 1.2-11 [97.6 kB] Get:279 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libdtd-parser-java all 1.2-1 [64.9 kB] Get:280 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjaxb-api-java all 2.3.1-1 [119 kB] Get:281 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libstax-ex-java all 1.7.8-3 [40.9 kB] Get:282 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libstreambuffer-java all 1.5.4-1.1 [74.0 kB] Get:283 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libfastinfoset-java all 1.2.12-3 [343 kB] Get:284 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjaxb-java all 2.3.0.1-10 [1952 kB] Get:285 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libngs-sdk2 amd64 2.10.9-1 [58.0 kB] Get:286 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libngs-sdk-dev amd64 2.10.9-1 [99.8 kB] Get:287 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libngs-java amd64 2.10.9-1 [76.2 kB] Get:288 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhtsjdk-java all 2.23.0+dfsg-2 [1605 kB] Get:289 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libfindbin-libs-perl all 2.190.02-1 [23.2 kB] Get:290 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsis-base-jni amd64 18.09~pre1+git20180928.45fbd31+dfsg-3 [12.7 kB] Get:291 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsis-base-java all 18.09~pre1+git20180928.45fbd31+dfsg-3 [96.4 kB] Get:292 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] Get:293 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] Get:294 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhdf5-103-1 amd64 1.10.6+repack-2 [1155 kB] Get:295 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsis-jhdf5-jni amd64 19.04.0+dfsg-4 [96.6 kB] Get:296 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsis-jhdf5-java all 19.04.0+dfsg-4 [1490 kB] Get:297 http://ftpmaster.internal/ubuntu hirsute/universe amd64 fastqc all 0.11.9+dfsg-4 [368 kB] Get:298 http://ftpmaster.internal/ubuntu hirsute/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4 [515 kB] Get:299 http://ftpmaster.internal/ubuntu hirsute/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-2 [117 kB] Get:300 http://ftpmaster.internal/ubuntu hirsute/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] Get:301 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libfml0 amd64 0.1+git20190320.b499514-1 [70.6 kB] Get:302 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjsoncpp24 amd64 1.9.4-4 [75.2 kB] Get:303 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libssw0 amd64 1.1-13 [19.1 kB] Get:304 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libseqlib2 amd64 1.2.0+dfsg-4 [161 kB] Get:305 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libtabixpp0 amd64 1.1.0-4ubuntu1 [9440 B] Get:306 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-2 [4464 B] Get:307 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libfastahack0 amd64 1.0.0+dfsg-7 [25.5 kB] Get:308 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-11 [36.0 kB] Get:309 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libvcflib1 amd64 1.0.2+dfsg-2 [150 kB] Get:310 http://ftpmaster.internal/ubuntu hirsute/universe amd64 freebayes amd64 1.3.5-1 [1462 kB] Get:311 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libgclib2 amd64 0.11.10+ds-2 [145 kB] Get:312 http://ftpmaster.internal/ubuntu hirsute/universe amd64 gffread amd64 0.12.1-4 [46.6 kB] Get:313 http://ftpmaster.internal/ubuntu hirsute/universe amd64 tabix amd64 1.11-4 [316 kB] Get:314 http://ftpmaster.internal/ubuntu hirsute/universe amd64 grabix amd64 0.1.7-2build1 [14.9 kB] Get:315 http://ftpmaster.internal/ubuntu hirsute/universe amd64 gsort amd64 0.1.4-3 [1745 kB] Get:316 http://ftpmaster.internal/ubuntu hirsute/universe amd64 hisat2 amd64 2.2.1-2 [3643 kB] Get:317 http://ftpmaster.internal/ubuntu hirsute/universe amd64 nim amd64 1.4.2-1 [3275 kB] Get:318 http://ftpmaster.internal/ubuntu hirsute/universe amd64 nim-hts-dev all 0.3.14+ds-1 [33.8 kB] Get:319 http://ftpmaster.internal/ubuntu hirsute/universe amd64 hts-nim-tools amd64 0.2.1-1 [207 kB] Get:320 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libbamtools2.5.1 amd64 2.5.1+dfsg-8 [155 kB] Get:321 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libfreemarker-java all 2.3.23-11 [1218 kB] Get:322 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjoptsimple-java all 5.0.4-4 [73.1 kB] Get:323 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libgoogle-gson-java all 2.8.6-1 [218 kB] Get:324 http://ftpmaster.internal/ubuntu hirsute/universe amd64 liblightcouch-java all 0.0.6-1.1 [65.2 kB] Get:325 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libmongodb-java all 3.6.3-2 [1899 kB] Get:326 http://ftpmaster.internal/ubuntu hirsute/universe amd64 liblog4j2-java all 2.13.3-1 [1976 kB] Get:327 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libbarclay-java all 2.1.0-3.1 [116 kB] Get:328 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libblosc1 amd64 1.20.1+ds1-2 [33.2 kB] Get:329 http://ftpmaster.internal/ubuntu hirsute/main amd64 libboost1.74-dev amd64 1.74.0-8ubuntu2 [9509 kB] Get:330 http://ftpmaster.internal/ubuntu hirsute/main amd64 libboost-dev amd64 1.74.0.3ubuntu5 [3580 B] Get:331 http://ftpmaster.internal/ubuntu hirsute/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-8ubuntu2 [256 kB] Get:332 http://ftpmaster.internal/ubuntu hirsute/main amd64 libboost-iostreams1.74.0 amd64 1.74.0-8ubuntu2 [238 kB] Get:333 http://ftpmaster.internal/ubuntu hirsute/main amd64 libboost-program-options1.74.0 amd64 1.74.0-8ubuntu2 [330 kB] Get:334 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcmark-gfm0 amd64 0.29.0.gfm.0-6 [93.9 kB] Get:335 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libcmark-gfm-extensions0 amd64 0.29.0.gfm.0-6 [23.3 kB] Get:336 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libdivsufsort3 amd64 2.0.1-5 [42.8 kB] Get:337 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libgatk-native-bindings-java all 1.0.0-2.1 [7380 B] Get:338 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libgkl-java all 0.8.7+dfsg-1 [1005 kB] Get:339 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libgzstream0 amd64 1.5+dfsg-5 [6888 B] Get:340 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhtscodecs2 amd64 0.5-3 [50.8 kB] Get:341 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjemalloc2 amd64 5.2.1-2 [224 kB] Get:342 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-bootstrap all 3.4.1+dfsg-2 [124 kB] Get:343 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] Get:344 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-es5-shim all 4.5.15-1 [36.1 kB] Get:345 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-1 [367 kB] Get:346 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-jquery-datatables all 1.10.21+dfsg-1 [137 kB] Get:347 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-jquery-metadata all 12-3 [7096 B] Get:348 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-sifter.js all 0.6.0+dfsg-1 [12.2 kB] Get:349 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] Get:350 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] Get:351 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-1 [185 kB] Get:352 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-json all 0~20190826+~1.0.5-2 [20.0 kB] Get:353 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] Get:354 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:355 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjs-sphinxdoc all 3.5.3-1 [130 kB] Get:356 http://ftpmaster.internal/ubuntu hirsute/main amd64 libc-ares2 amd64 1.17.1-1 [42.0 kB] Get:357 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libnode72 amd64 12.21.0~dfsg-3ubuntu1 [8490 kB] Get:358 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libpicard-java all 2.24.1+dfsg-1 [1615 kB] Get:359 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libstaden-read14 amd64 1.14.13-4 [230 kB] Get:360 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-littler amd64 0.3.12-1 [83.0 kB] Get:361 http://ftpmaster.internal/ubuntu hirsute/universe amd64 littler all 0.3.12-1 [2380 B] Get:362 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-pkgkitten all 0.2.1-1 [24.8 kB] Get:363 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rcpp amd64 1.0.6-1 [1944 kB] Get:364 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-plyr amd64 1.8.6-2build1 [830 kB] Get:365 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-digest amd64 0.6.27-1 [179 kB] Get:366 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-glue amd64 1.4.2-1 [134 kB] Get:367 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-gtable all 0.3.0+dfsg-2build1 [138 kB] Get:368 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-brio amd64 1.1.1-1 [31.5 kB] Get:369 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-ps amd64 1.5.0-1 [277 kB] Get:370 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-r6 all 2.5.0-1 [98.5 kB] Get:371 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-processx amd64 3.4.5-1 [296 kB] Get:372 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-callr all 3.5.1-1 [386 kB] Get:373 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-assertthat all 0.2.1-2build1 [56.5 kB] Get:374 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-cli all 2.3.0-1 [479 kB] Get:375 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-crayon all 1.4.0-1 [144 kB] Get:376 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rprojroot all 2.0.2-1 [114 kB] Get:377 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-desc all 1.2.0-3build1 [299 kB] Get:378 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rlang amd64 0.4.10-1ubuntu1 [1169 kB] Get:379 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-ellipsis amd64 0.3.1-1build1 [31.8 kB] Get:380 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-evaluate all 0.14-2build1 [81.4 kB] Get:381 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-jsonlite amd64 1.7.2+dfsg-1 [447 kB] Get:382 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-lifecycle all 0.2.0-2build1 [93.3 kB] Get:383 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-magrittr amd64 2.0.1-1 [149 kB] Get:384 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-prettyunits all 1.1.1-2build1 [39.6 kB] Get:385 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-withr all 2.4.1-1 [198 kB] Get:386 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get:387 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rstudioapi all 0.13-1 [256 kB] Get:388 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-pkgload amd64 1.1.0-1 [168 kB] Get:389 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] Get:390 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-diffobj amd64 0.3.2-1 [1069 kB] Get:391 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-fansi amd64 0.4.2-1 [345 kB] Get:392 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-utf8 amd64 1.1.4-2 [131 kB] Get:393 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-vctrs amd64 0.3.6-1 [1051 kB] Get:394 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-pillar all 1.4.7-1 [225 kB] Get:395 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] Get:396 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-tibble amd64 3.0.6+dfsg-1 [410 kB] Get:397 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] Get:398 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-waldo all 0.2.3-2 [79.4 kB] Get:399 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-testthat amd64 3.0.1-1 [1444 kB] Get:400 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-isoband amd64 0.2.3-2 [1952 kB] Get:401 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-mass amd64 7.3-53.1-1 [1114 kB] Get:402 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-lattice amd64 0.20-41-1build1 [1120 kB] Get:403 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-nlme amd64 3.1.152-1 [2227 kB] Get:404 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-matrix amd64 1.3-2+really1.3-2-0ubuntu1 [3570 kB] Get:405 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-mgcv amd64 1.8-34-1 [2947 kB] Get:406 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-farver amd64 2.0.3-1build2 [1337 kB] Get:407 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-labeling all 0.4.2-1 [62.6 kB] Get:408 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-colorspace amd64 2.0-0+dfsg-1 [1534 kB] Get:409 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-munsell all 0.5.0-2build1 [208 kB] Get:410 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rcolorbrewer all 1.1-2-3 [54.6 kB] Get:411 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-viridislite all 0.3.0-4 [58.9 kB] Get:412 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-scales all 1.1.1-1build1 [486 kB] Get:413 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-ggplot2 all 3.3.3+dfsg-1 [3122 kB] Get:414 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-gridbase all 0.4-7-5build1 [163 kB] Get:415 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libvcflib-tools amd64 1.0.2+dfsg-2 [718 kB] Get:416 http://ftpmaster.internal/ubuntu hirsute/universe amd64 samblaster amd64 0.1.26-1 [26.6 kB] Get:417 http://ftpmaster.internal/ubuntu hirsute/universe amd64 samtools amd64 1.11-1 [516 kB] Get:418 http://ftpmaster.internal/ubuntu hirsute/universe amd64 lumpy-sv amd64 0.3.1+dfsg-5 [188 kB] Get:419 http://ftpmaster.internal/ubuntu hirsute/universe amd64 mosdepth amd64 0.3.1+ds-2 [155 kB] Get:420 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-colorama all 0.4.4-1 [24.5 kB] Get:421 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-click all 7.1.2-1 [66.1 kB] Get:422 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-humanfriendly all 9.1-1 [69.0 kB] Get:423 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-coloredlogs all 7.3-2 [28.0 kB] Get:424 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-future all 0.18.2-5 [336 kB] Get:425 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-markupsafe amd64 1.1.1-1build2 [13.7 kB] Get:426 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-jinja2 all 2.11.2-1 [99.8 kB] Get:427 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-lzstring all 1.0.4-1.1 [5496 B] Get:428 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-markdown all 3.3.4-1 [67.2 kB] Get:429 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-certifi all 2020.6.20-1 [150 kB] Get:430 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-chardet all 4.0.0-1 [98.0 kB] Get:431 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-idna all 2.10-1 [35.2 kB] Get:432 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-urllib3 all 1.26.2-1ubuntu1 [95.9 kB] Get:433 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-requests all 2.25.1+dfsg-2 [47.9 kB] Get:434 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-simplejson amd64 3.17.2-1 [50.9 kB] Get:435 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-colormath all 3.0.0-1.1 [35.3 kB] Get:436 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-spectra all 0.0.11-2 [16.4 kB] Get:437 http://ftpmaster.internal/ubuntu hirsute/universe amd64 multiqc all 1.9+dfsg-2 [514 kB] Get:438 http://ftpmaster.internal/ubuntu hirsute/universe amd64 nodejs amd64 12.21.0~dfsg-3ubuntu1 [119 kB] Get:439 http://ftpmaster.internal/ubuntu hirsute/universe amd64 node-highlight.js all 9.18.5+dfsg1-1 [304 kB] Get:440 http://ftpmaster.internal/ubuntu hirsute/universe amd64 node-html5shiv all 3.7.3+dfsg-3 [12.9 kB] Get:441 http://ftpmaster.internal/ubuntu hirsute/universe amd64 pandoc-data all 2.9.2.1-1ubuntu3 [78.5 kB] Get:442 http://ftpmaster.internal/ubuntu hirsute/universe amd64 pandoc amd64 2.9.2.1-1ubuntu3 [18.2 MB] Get:443 http://ftpmaster.internal/ubuntu hirsute/universe amd64 picard-tools all 2.24.1+dfsg-1 [309 kB] Get:444 http://ftpmaster.internal/ubuntu hirsute/main amd64 python-babel-localedata all 2.8.0+dfsg.1-6 [4985 kB] Get:445 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-all amd64 3.9.4-1 [1096 B] Get:446 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-argcomplete all 1.8.1-1.5 [27.2 kB] Get:447 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-attr all 20.3.0-1 [40.2 kB] Get:448 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-babel all 2.8.0+dfsg.1-6 [85.1 kB] Get:449 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-colorlog all 4.7.2-1 [19.4 kB] Get:450 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-commonmark all 0.9.1-3 [43.7 kB] Get:451 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-cyvcf2 amd64 0.30.4-4 [805 kB] Get:452 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-roman all 2.0.0-5 [8928 B] Get:453 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-docutils all 0.16+dfsg-3 [369 kB] Get:454 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-geneimpacts all 0.3.7-3 [33.5 kB] Get:455 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-argh all 0.26.2-1.1 [24.9 kB] Get:456 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-gffutils all 0.10.1-2 [1028 kB] Get:457 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-imagesize all 1.2.0-2 [5868 B] Get:458 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-more-itertools all 4.2.0-3 [39.8 kB] Get:459 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-zipp all 1.0.0-3 [5440 B] Get:460 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get:461 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-iniconfig all 1.1.1-1 [5960 B] Get:462 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-logbook amd64 1.5.3-4build1 [96.0 kB] Get:463 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pybedtools amd64 0.8.0-5build2 [12.1 MB] Get:464 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-mirtop all 0.4.23-1 [52.2 kB] Get:465 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-nose all 1.3.7-7 [116 kB] Get:466 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-packaging all 20.9-2 [29.9 kB] Get:467 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-setuptools all 52.0.0-3 [379 kB] Get:468 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-pbr all 5.5.1-0ubuntu1 [64.1 kB] Get:469 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pluggy all 0.13.0-6 [18.7 kB] Get:470 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-ply all 3.11-4 [46.6 kB] Get:471 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-progressbar all 2.5-2 [11.6 kB] Get:472 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-psutil amd64 5.8.0-1 [153 kB] Get:473 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-py all 1.10.0-1 [71.9 kB] Get:474 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-pygments all 2.7.1+dfsg-2ubuntu1 [639 kB] Get:475 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-toml all 0.10.1-1 [16.0 kB] Get:476 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pytest all 6.0.2-2ubuntu1 [205 kB] Get:477 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-pytest-mock all 1.10.4-4 [14.9 kB] Get:478 http://ftpmaster.internal/ubuntu hirsute/main amd64 sphinx-common all 3.5.3-1 [576 kB] Get:479 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get:480 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get:481 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-sphinx all 3.5.3-1 [524 kB] Get:482 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-recommonmark all 0.6.0+ds-1 [16.6 kB] Get:483 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-regex amd64 0.1.20201113-1 [256 kB] Get:484 http://ftpmaster.internal/ubuntu hirsute/multiverse amd64 python3-seqcluster all 1.2.7+ds-1 [1662 kB] Get:485 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-toolz all 0.9.0-1.1 [42.1 kB] Get:486 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-tornado amd64 6.1.0-1build1 [283 kB] Get:487 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-vcf amd64 0.6.8+git20170215.476169c-7build2 [40.1 kB] Get:488 http://ftpmaster.internal/ubuntu hirsute/universe amd64 pythonpy all 0.4.11b-3 [9874 B] Get:489 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-biobase amd64 2.50.0-1build1 [2229 kB] Get:490 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-all all 1.32.0-1 [11.4 MB] Get:491 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-s4vectors amd64 0.28.1-1 [2026 kB] Get:492 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-iranges amd64 2.24.1-1 [2200 kB] Get:493 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-dbi all 1.1.1-1 [617 kB] Get:494 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-bit amd64 4.0.4+dfsg-1 [423 kB] Get:495 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] Get:496 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-blob all 1.2.1-2build1 [49.9 kB] Get:497 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-fastmap amd64 1.1.0-1 [64.8 kB] Get:498 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-cachem amd64 1.0.3-1 [61.6 kB] Get:499 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-memoise all 2.0.0-1 [52.8 kB] Get:500 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-bh all 1.74.0-1 [5240 B] Get:501 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] Get:502 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rsqlite amd64 2.2.3-1 [1036 kB] Get:503 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-annotationdbi all 1.52.0-1 [4702 kB] Get:504 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-xml amd64 3.99-0.5-1 [1700 kB] Get:505 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get:506 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-curl amd64 4.3+dfsg-1build1 [152 kB] Get:507 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-mime amd64 0.9-1build1 [35.7 kB] Get:508 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-sys amd64 3.4-1 [43.0 kB] Get:509 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-askpass amd64 1.1-2 [22.4 kB] Get:510 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-openssl amd64 1.4.3+dfsg-2 [375 kB] Get:511 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-httr all 1.4.2-1 [478 kB] Get:512 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-annotate all 1.68.0+dfsg-1 [2103 kB] Get:513 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-generics all 0.1.0-1 [73.5 kB] Get:514 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-purrr amd64 0.3.4-1build1 [397 kB] Get:515 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-tidyselect amd64 1.1.0+dfsg-1build1 [192 kB] Get:516 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-dplyr amd64 1.0.4-1 [1132 kB] Get:517 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-dbplyr all 2.1.0-1 [791 kB] Get:518 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] Get:519 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-biocfilecache all 1.14.0+dfsg-1 [289 kB] Get:520 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-formatr all 1.7-2build1 [147 kB] Get:521 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] Get:522 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] Get:523 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] Get:524 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-snow all 1:0.4.3-2 [109 kB] Get:525 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-biocparallel amd64 1.24.1-1 [1142 kB] Get:526 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-hms all 1.0.0-1 [95.1 kB] Get:527 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-progress all 1.2.2-2build1 [88.9 kB] Get:528 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-stringi amd64 1.5.3-1 [731 kB] Get:529 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-stringr all 1.4.0-2build1 [192 kB] Get:530 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-xml2 amd64 1.3.2-1build1 [274 kB] Get:531 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-biomart all 2.46.2+dfsg-1 [399 kB] Get:532 http://ftpmaster.internal/ubuntu hirsute/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu6 [156 kB] Get:533 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8908 B] Get:534 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-xvector amd64 0.30.0-1 [620 kB] Get:535 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-biostrings amd64 2.58.0-1 [14.2 MB] Get:536 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-bitops amd64 1.0-6-5 [23.1 kB] Get:537 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rcurl amd64 1.98-1.2-1build1 [789 kB] Get:538 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get:539 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-genomeinfodb all 1.26.2-2 [3904 kB] Get:540 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-genomicranges amd64 1.42.0+dfsg-1 [1861 kB] Get:541 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-rhtslib amd64 1.22.0+dfsg-1 [1020 kB] Get:542 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-rsamtools amd64 2.6.0-1 [3655 kB] Get:543 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-matrixstats amd64 0.58.0-2 [671 kB] Get:544 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-matrixgenerics all 1.2.1-4 [289 kB] Get:545 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-delayedarray amd64 0.16.1+dfsg-1 [1795 kB] Get:546 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1953 kB] Get:547 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-genomicalignments amd64 1.26.0-1 [2195 kB] Get:548 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-rtracklayer amd64 1.50.0-1 [7464 kB] Get:549 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-bsgenome all 1.58.0-1 [7206 kB] Get:550 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-globaloptions all 0.1.2-1 [417 kB] Get:551 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-shape all 1.4.5-1 [771 kB] Get:552 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-circlize all 0.4.12-1 [3217 kB] Get:553 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rjson amd64 0.2.20-2 [127 kB] Get:554 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-getoptlong all 1.0.5+dfsg-1 [395 kB] Get:555 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-cluster amd64 2.1.1-1build1 [535 kB] Get:556 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-clue amd64 0.3-58-1 [1113 kB] Get:557 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-png amd64 0.1-7-4 [39.7 kB] Get:558 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-cairo amd64 1.5-12.2-1 [74.4 kB] Get:559 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-complexheatmap all 2.6.2+dfsg-1 [2873 kB] Get:560 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-consensusclusterplus all 1.54.0-1 [326 kB] Get:561 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-backports amd64 1.2.1-1 [89.1 kB] Get:562 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-cpp11 all 0.2.6-1 [144 kB] Get:563 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-tidyr amd64 1.1.2-1 [774 kB] Get:564 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-broom all 0.7.4+dfsg-1 [1658 kB] Get:565 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-cowplot all 1.1.1+dfsg-1 [614 kB] Get:566 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-survival amd64 3.2-7-1 [7604 kB] Get:567 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-genefilter amd64 1.72.1-1 [1153 kB] Get:568 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-locfit amd64 1.5-9.4-2build1 [505 kB] Get:569 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-geneplotter all 1.68.0-1 [1551 kB] Get:570 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rcpparmadillo amd64 0.10.2.1.0-1build1 [1128 kB] Get:571 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-deseq2 amd64 1.30.1+dfsg-1 [1253 kB] Get:572 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-limma amd64 3.46.0+dfsg-1 [1710 kB] Get:573 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-edger amd64 3.32.1+dfsg-1 [1075 kB] Get:574 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-ggdendro all 0.1.22+dfsg-1 [135 kB] Get:575 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-ggrepel amd64 0.9.1-1 [375 kB] Get:576 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-highr all 0.8+dfsg-2build1 [40.3 kB] Get:577 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-xfun amd64 0.20-1 [288 kB] Get:578 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-markdown amd64 1.1+dfsg-1build1 [125 kB] Get:579 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-yaml amd64 2.2.1-1build1 [101 kB] Get:580 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] Get:581 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-knitr all 1.31+dfsg-1 [831 kB] Get:582 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-logging all 0.10-108-2build1 [158 kB] Get:583 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-lasso2 amd64 1.2-21.1-1 [261 kB] Get:584 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-nozzle.r1 all 1.1-1+dfsg-4build1 [310 kB] Get:585 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-tmvnsim amd64 1.0-2-1 [19.9 kB] Get:586 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-mnormt amd64 2.0.2-1 [149 kB] Get:587 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-psych all 2.0.12-1 [4634 kB] Get:588 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-reshape all 0.8.8-2build1 [168 kB] Get:589 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-degreport all 1.26.0+dfsg-1 [1851 kB] Get:590 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-genomicfeatures all 1.42.1+dfsg-1 [1835 kB] Get:591 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-htsfilter all 1.30.1+dfsg-1 [162 kB] Get:592 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-variantannotation amd64 1.36.0-1 [3500 kB] Get:593 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-data.table amd64 1.13.6+dfsg-1 [1715 kB] Get:594 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] Get:595 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-vgam amd64 1.1-5-1 [6977 kB] Get:596 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-rhdf5lib amd64 1.12.1+dfsg-2 [27.7 kB] Get:597 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-rhdf5filters amd64 1.2.0+dfsg2-1 [22.3 kB] Get:598 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-rhdf5 amd64 2.34.0+dfsg-1 [527 kB] Get:599 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-purecn all 1.20.0+dfsg-3 [5310 kB] Get:600 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-codetools all 0.2-18-1 [90.8 kB] Get:601 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-iterators all 1.0.13-1 [329 kB] Get:602 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-foreach all 1.5.1-1 [120 kB] Get:603 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-titancna amd64 1.28.0-2 [3950 kB] Get:604 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-bioc-tximport all 1.18.0+dfsg-1 [86.4 kB] Get:605 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] Get:606 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rematch all 1.0.1-3 [14.2 kB] Get:607 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-cellranger all 1.1.0-3 [102 kB] Get:608 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-clipr all 0.7.1-1 [50.7 kB] Get:609 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-commonmark amd64 1.7-2 [111 kB] Get:610 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-forcats all 0.5.1-1 [302 kB] Get:611 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-fs amd64 1.5.0+dfsg-1 [224 kB] Get:612 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-readr amd64 1.4.0-1 [749 kB] Get:613 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-haven amd64 2.3.1-1 [312 kB] Get:614 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-htmltools amd64 0.5.1.1-1 [241 kB] Get:615 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-later amd64 1.1.0.1+dfsg-1 [120 kB] Get:616 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-promises amd64 1.1.1+dfsg-1 [173 kB] Get:617 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-httpuv amd64 1.5.5+dfsg-1 [492 kB] Get:618 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-lubridate amd64 1.7.9.2+dfsg-1 [1033 kB] Get:619 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-modelr all 0.1.8-1build1 [196 kB] Get:620 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-readxl amd64 1.3.1-2build2 [720 kB] Get:621 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-tinytex all 0.29-1 [118 kB] Get:622 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-modernizr all 2.6.2+ds1-4 [47.1 kB] Get:623 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-sourcetools amd64 0.1.7-3 [45.4 kB] Get:624 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] Get:625 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-shiny all 1.5.0+dfsg-1 [3562 kB] Get:626 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rmarkdown all 2.6+dfsg-1 [2149 kB] Get:627 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-reprex all 1.0.0-1 [449 kB] Get:628 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-selectr all 0.4-2-2build1 [416 kB] Get:629 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-rvest all 0.3.6-1 [1492 kB] Get:630 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-cran-tidyverse all 1.3.0-2build1 [399 kB] Get:631 http://ftpmaster.internal/ubuntu hirsute/universe amd64 r-other-wasabi all 1.0.1-2build1 [27.6 kB] Get:632 http://ftpmaster.internal/ubuntu hirsute/universe amd64 rapmap amd64 0.15.0+dfsg-1build1 [840 kB] Get:633 http://ftpmaster.internal/ubuntu hirsute/universe amd64 rna-star amd64 2.7.8a+dfsg-2 [1243 kB] Get:634 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libtbb2 amd64 2020.3-1 [125 kB] Get:635 http://ftpmaster.internal/ubuntu hirsute/main amd64 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [992 kB] Get:636 http://ftpmaster.internal/ubuntu hirsute/universe amd64 salmon amd64 1.4.0+ds1-1build1 [2150 kB] Get:637 http://ftpmaster.internal/ubuntu hirsute/universe amd64 seqtk amd64 1.3-2 [30.2 kB] Get:638 http://ftpmaster.internal/ubuntu hirsute/universe amd64 subread amd64 2.0.1+dfsg-1 [657 kB] Get:639 http://ftpmaster.internal/ubuntu hirsute/universe amd64 tophat-recondition all 1.4-3 [9648 B] Get:640 http://ftpmaster.internal/ubuntu hirsute/universe amd64 umis amd64 1.0.7-1build1 [24.0 kB] Get:641 http://ftpmaster.internal/ubuntu hirsute/universe amd64 vcfanno amd64 0.3.2+ds-2 [2150 kB] Get:642 http://ftpmaster.internal/ubuntu hirsute/universe amd64 vt amd64 0.57721+ds-3 [776 kB] Get:643 http://ftpmaster.internal/ubuntu hirsute/universe amd64 wham-align amd64 0.1.5-8 [156 kB] Get:644 http://ftpmaster.internal/ubuntu hirsute/universe amd64 xonsh all 0.9.25+dfsg-1 [340 kB] Get:645 http://ftpmaster.internal/ubuntu hirsute/universe amd64 bowtie2 amd64 2.4.2-2 [1327 kB] Get:646 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3-mock all 4.0.3-1 [27.9 kB] Get:647 http://ftpmaster.internal/ubuntu hirsute/universe amd64 seqan-apps amd64 2.4.0+dfsg-14ubuntu1 [12.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 555 MB in 13s (41.5 MB/s) Selecting previously unselected package libpython3.9-minimal:amd64. (Reading database ... 14993 files and directories currently installed.) Preparing to unpack .../libpython3.9-minimal_3.9.4-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.4-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../python3.9-minimal_3.9.4-1_amd64.deb ... Unpacking python3.9-minimal (3.9.4-1) ... Setting up libpython3.9-minimal:amd64 (3.9.4-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15286 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.4-1_amd64.deb ... Unpacking python3-minimal (3.9.4-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.68ubuntu1_all.deb ... Unpacking mailcap (3.68ubuntu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../4-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.4-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.4-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.4-1_amd64.deb ... Unpacking python3.9 (3.9.4-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.4-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.4-1) ... Setting up python3-minimal (3.9.4-1) ... Selecting previously unselected package python3. (Reading database ... 15707 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.4-1_amd64.deb ... Unpacking python3 (3.9.4-1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../001-bsdextrautils_2.36.1-7ubuntu2_amd64.deb ... Unpacking bsdextrautils (2.36.1-7ubuntu2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../006-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package node-normalize.css. Preparing to unpack .../007-node-normalize.css_8.0.1-3_all.deb ... Unpacking node-normalize.css (8.0.1-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../008-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../010-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../012-libmd0_1.0.3-3build1_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3build1) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../013-libbsd0_0.11.3-1ubuntu2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1ubuntu2) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../014-libdbus-1-3_1.12.20-1ubuntu3_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-1ubuntu3) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../015-libelf1_0.183-6_amd64.deb ... Unpacking libelf1:amd64 (0.183-6) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../016-libfribidi0_1.0.8-2ubuntu1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.8-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../017-libglib2.0-0_2.68.0-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.68.0-1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../018-libicu67_67.1-6ubuntu2_amd64.deb ... Unpacking libicu67:amd64 (67.1-6ubuntu2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../019-libxml2_2.9.10+dfsg-6.3build2_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.3build2) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../020-libyaml-0-2_0.2.2-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.2-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../021-python3-pkg-resources_52.0.0-3_all.deb ... Unpacking python3-pkg-resources (52.0.0-3) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../022-python3-yaml_5.3.1-3build1_amd64.deb ... Unpacking python3-yaml (5.3.1-3build1) ... Selecting previously unselected package ucf. Preparing to unpack .../023-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package gettext-base. Preparing to unpack .../024-gettext-base_0.21-3ubuntu2_amd64.deb ... Unpacking gettext-base (0.21-3ubuntu2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../025-libdrm-common_2.4.104-1build1_all.deb ... Unpacking libdrm-common (2.4.104-1build1) ... Selecting previously unselected package libdrm2:amd64. Preparing to unpack .../026-libdrm2_2.4.104-1build1_amd64.deb ... Unpacking libdrm2:amd64 (2.4.104-1build1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../027-libedit2_3.1-20191231-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-2) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../028-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../029-libuv1_1.40.0-1_amd64.deb ... Unpacking libuv1:amd64 (1.40.0-1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../030-libxau6_1%3a1.0.9-1build3_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.9-1build3) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../031-libxdmcp6_1%3a1.1.3-0ubuntu3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.3-0ubuntu3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../032-libxcb1_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb1:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../033-libx11-data_2%3a1.7.0-2build2_all.deb ... Unpacking libx11-data (2:1.7.0-2build2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../034-libx11-6_2%3a1.7.0-2build2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.7.0-2build2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../035-libxext6_2%3a1.3.4-0ubuntu3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-0ubuntu3) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../036-libnspr4_2%3a4.29-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.29-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../037-libnss3_2%3a3.63-1ubuntu1_amd64.deb ... Unpacking libnss3:amd64 (2:3.63-1ubuntu1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../038-ca-certificates-java_20190909_all.deb ... Unpacking ca-certificates-java (20190909) ... Selecting previously unselected package java-common. Preparing to unpack .../039-java-common_0.72_all.deb ... Unpacking java-common (0.72) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../040-libavahi-common-data_0.8-5ubuntu2_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.8-5ubuntu2) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../041-libavahi-common3_0.8-5ubuntu2_amd64.deb ... Unpacking libavahi-common3:amd64 (0.8-5ubuntu2) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../042-libavahi-client3_0.8-5ubuntu2_amd64.deb ... Unpacking libavahi-client3:amd64 (0.8-5ubuntu2) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../043-libcups2_2.3.3op2-3ubuntu3_amd64.deb ... Unpacking libcups2:amd64 (2.3.3op2-3ubuntu3) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../044-liblcms2-2_2.12~rc1-2_amd64.deb ... Unpacking liblcms2-2:amd64 (2.12~rc1-2) ... Selecting previously unselected package libjpeg-turbo8:amd64. Preparing to unpack .../045-libjpeg-turbo8_2.0.6-0ubuntu2_amd64.deb ... Unpacking libjpeg-turbo8:amd64 (2.0.6-0ubuntu2) ... Selecting previously unselected package libjpeg8:amd64. Preparing to unpack .../046-libjpeg8_8c-2ubuntu8_amd64.deb ... Unpacking libjpeg8:amd64 (8c-2ubuntu8) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../047-libbrotli1_1.0.9-2build2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2build2) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../048-libfreetype6_2.10.4+dfsg-1build1_amd64.deb ... Unpacking libfreetype6:amd64 (2.10.4+dfsg-1build1) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../049-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../050-fontconfig-config_2.13.1-4.2ubuntu3_all.deb ... Unpacking fontconfig-config (2.13.1-4.2ubuntu3) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../051-libfontconfig1_2.13.1-4.2ubuntu3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-4.2ubuntu3) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../052-libasound2-data_1.2.4-1.1ubuntu2_all.deb ... Unpacking libasound2-data (1.2.4-1.1ubuntu2) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../053-libasound2_1.2.4-1.1ubuntu2_amd64.deb ... Unpacking libasound2:amd64 (1.2.4-1.1ubuntu2) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../054-libgraphite2-3_1.3.14-1_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../055-libharfbuzz0b_2.7.4-1ubuntu1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.7.4-1ubuntu1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../056-libpcsclite1_1.9.1-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.9.1-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../057-openjdk-11-jre-headless_11.0.11+8-0ubuntu2_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.11+8-0ubuntu2) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../058-default-jre-headless_2%3a1.11-72_amd64.deb ... Unpacking default-jre-headless (2:1.11-72) ... Selecting previously unselected package ant. Preparing to unpack .../059-ant_1.10.9-3_all.deb ... Unpacking ant (1.10.9-3) ... Selecting previously unselected package ant-optional. Preparing to unpack .../060-ant-optional_1.10.9-3_all.deb ... Unpacking ant-optional (1.10.9-3) ... Selecting previously unselected package cython3. Preparing to unpack .../061-cython3_0.29.21-1ubuntu3_amd64.deb ... Unpacking cython3 (0.29.21-1ubuntu3) ... Selecting previously unselected package libroken18-heimdal:amd64. Preparing to unpack .../062-libroken18-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libroken18-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libasn1-8-heimdal:amd64. Preparing to unpack .../063-libasn1-8-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libasn1-8-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libheimbase1-heimdal:amd64. Preparing to unpack .../064-libheimbase1-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libheimbase1-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libhcrypto4-heimdal:amd64. Preparing to unpack .../065-libhcrypto4-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libhcrypto4-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libwind0-heimdal:amd64. Preparing to unpack .../066-libwind0-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libwind0-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libhx509-5-heimdal:amd64. Preparing to unpack .../067-libhx509-5-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libhx509-5-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libkrb5-26-heimdal:amd64. Preparing to unpack .../068-libkrb5-26-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libkrb5-26-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libheimntlm0-heimdal:amd64. Preparing to unpack .../069-libheimntlm0-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libheimntlm0-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libgssapi3-heimdal:amd64. Preparing to unpack .../070-libgssapi3-heimdal_7.7.0+dfsg-2_amd64.deb ... Unpacking libgssapi3-heimdal:amd64 (7.7.0+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../071-libsasl2-modules-db_2.1.27+dfsg-2ubuntu1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../072-libsasl2-2_2.1.27+dfsg-2ubuntu1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2ubuntu1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../073-libldap-2.4-2_2.4.57+dfsg-2ubuntu1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-2ubuntu1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../074-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../075-librtmp1_2.4+20151223.gitfa8646d.1-2build2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build2) ... Selecting previously unselected package libssh-4:amd64. Preparing to unpack .../076-libssh-4_0.9.5-1_amd64.deb ... Unpacking libssh-4:amd64 (0.9.5-1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../077-libcurl3-gnutls_7.74.0-1ubuntu2_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.74.0-1ubuntu2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../078-libdeflate0_1.7-1ubuntu1_amd64.deb ... Unpacking libdeflate0:amd64 (1.7-1ubuntu1) ... Selecting previously unselected package libhts3:amd64. Preparing to unpack .../079-libhts3_1.11-4_amd64.deb ... Unpacking libhts3:amd64 (1.11-4) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../080-python3-pysam_0.15.4+ds-3build2_amd64.deb ... Unpacking python3-pysam (0.15.4+ds-3build2) ... Selecting previously unselected package atropos. Preparing to unpack .../081-atropos_1.1.29+dfsg-1_amd64.deb ... Unpacking atropos (1.1.29+dfsg-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../082-libsigsegv2_2.13-1ubuntu1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1ubuntu1) ... Selecting previously unselected package m4. Preparing to unpack .../083-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../084-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../085-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../086-automake_1%3a1.16.3-2ubuntu1_all.deb ... Unpacking automake (1:1.16.3-2ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../087-autopoint_0.21-3ubuntu2_all.deb ... Unpacking autopoint (0.21-3ubuntu2) ... Selecting previously unselected package bamkit. Preparing to unpack .../088-bamkit_0.0.1+git20170413.ccd079d-2_all.deb ... Unpacking bamkit (0.0.1+git20170413.ccd079d-2) ... Selecting previously unselected package bcftools. Preparing to unpack .../089-bcftools_1.11-1_amd64.deb ... Unpacking bcftools (1.11-1) ... Selecting previously unselected package bedtools. Preparing to unpack .../090-bedtools_2.30.0+dfsg-1_amd64.deb ... Unpacking bedtools (2.30.0+dfsg-1) ... Selecting previously unselected package libgpgme11:amd64. Preparing to unpack .../091-libgpgme11_1.14.0-1ubuntu3_amd64.deb ... Unpacking libgpgme11:amd64 (1.14.0-1ubuntu3) ... Selecting previously unselected package libmaus2-2. Preparing to unpack .../092-libmaus2-2_2.0.768+dfsg-1_amd64.deb ... Unpacking libmaus2-2 (2.0.768+dfsg-1) ... Selecting previously unselected package biobambam2. Preparing to unpack .../093-biobambam2_2.0.179+ds-1_amd64.deb ... Unpacking biobambam2 (2.0.179+ds-1) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../094-libblas3_3.9.0-3ubuntu2_amd64.deb ... Unpacking libblas3:amd64 (3.9.0-3ubuntu2) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../095-libgfortran5_11-20210404-1ubuntu1_amd64.deb ... Unpacking libgfortran5:amd64 (11-20210404-1ubuntu1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../096-liblapack3_3.9.0-3ubuntu2_amd64.deb ... Unpacking liblapack3:amd64 (3.9.0-3ubuntu2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../097-python3-numpy_1%3a1.19.5-1ubuntu2_amd64.deb ... Unpacking python3-numpy (1:1.19.5-1ubuntu2) ... Selecting previously unselected package python3-reportlab-accel:amd64. Preparing to unpack .../098-python3-reportlab-accel_3.5.66-1_amd64.deb ... Unpacking python3-reportlab-accel:amd64 (3.5.66-1) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../099-libimagequant0_2.12.2-1.1_amd64.deb ... Unpacking libimagequant0:amd64 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../100-libjbig0_2.1-3.1build1_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1build1) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../101-libwebp6_0.6.1-2_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../102-libtiff5_4.2.0-1build1_amd64.deb ... Unpacking libtiff5:amd64 (4.2.0-1build1) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../103-libwebpdemux2_0.6.1-2_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.6.1-2) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../104-libwebpmux3_0.6.1-2_amd64.deb ... Unpacking libwebpmux3:amd64 (0.6.1-2) ... Selecting previously unselected package python3-pil:amd64. Preparing to unpack .../105-python3-pil_8.1.2-1_amd64.deb ... Unpacking python3-pil:amd64 (8.1.2-1) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../106-python3-reportlab_3.5.66-1_all.deb ... Unpacking python3-reportlab (3.5.66-1) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../107-python3-biopython_1.78+dfsg-4ubuntu1_amd64.deb ... Unpacking python3-biopython (1.78+dfsg-4ubuntu1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../108-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../109-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../110-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../111-python-matplotlib-data_3.3.4-1_all.deb ... Unpacking python-matplotlib-data (3.3.4-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../112-python3-six_1.15.0-2_all.deb ... Unpacking python3-six (1.15.0-2) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../113-python3-dateutil_2.8.1-5_all.deb ... Unpacking python3-dateutil (2.8.1-5) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../114-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../115-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../116-python3-kiwisolver_1.3.1-1build1_amd64.deb ... Unpacking python3-kiwisolver (1.3.1-1build1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../117-python3-matplotlib_3.3.4-1_amd64.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../118-python3-tz_2021.1-1_all.deb ... Unpacking python3-tz (2021.1-1) ... Selecting previously unselected package python3-pandas-lib:amd64. Preparing to unpack .../119-python3-pandas-lib_1.1.5+dfsg-2_amd64.deb ... Unpacking python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../120-python3-pandas_1.1.5+dfsg-2_all.deb ... Unpacking python3-pandas (1.1.5+dfsg-2) ... Selecting previously unselected package python3-joblib. Preparing to unpack .../121-python3-joblib_0.17.0-2_all.deb ... Unpacking python3-joblib (0.17.0-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../122-python3-decorator_4.4.2-0ubuntu1_all.deb ... Unpacking python3-decorator (4.4.2-0ubuntu1) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../123-python3-networkx_2.4-4ubuntu1_all.deb ... Unpacking python3-networkx (2.4-4ubuntu1) ... Selecting previously unselected package liblbfgsb0:amd64. Preparing to unpack .../124-liblbfgsb0_3.0+dfsg.3-9_amd64.deb ... Unpacking liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../125-python3-scipy_1.6.0-2_amd64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-pomegranate. Preparing to unpack .../126-python3-pomegranate_0.13.5-1_amd64.deb ... Unpacking python3-pomegranate (0.13.5-1) ... Selecting previously unselected package python3-pyfaidx. Preparing to unpack .../127-python3-pyfaidx_0.5.9.2-1_all.deb ... Unpacking python3-pyfaidx (0.5.9.2-1) ... Selecting previously unselected package python3-sklearn-lib:amd64. Preparing to unpack .../128-python3-sklearn-lib_0.23.2-5ubuntu2_amd64.deb ... Unpacking python3-sklearn-lib:amd64 (0.23.2-5ubuntu2) ... Selecting previously unselected package python3-threadpoolctl. Preparing to unpack .../129-python3-threadpoolctl_2.1.0-1_all.deb ... Unpacking python3-threadpoolctl (2.1.0-1) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../130-python3-sklearn_0.23.2-5ubuntu2_all.deb ... Unpacking python3-sklearn (0.23.2-5ubuntu2) ... Selecting previously unselected package zip. Preparing to unpack .../131-zip_3.0-12_amd64.deb ... Unpacking zip (3.0-12) ... Selecting previously unselected package unzip. Preparing to unpack .../132-unzip_6.0-26ubuntu1_amd64.deb ... Unpacking unzip (6.0-26ubuntu1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../133-libpaper1_1.1.28_amd64.deb ... Unpacking libpaper1:amd64 (1.1.28) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../134-libpaper-utils_1.1.28_amd64.deb ... Unpacking libpaper-utils (1.1.28) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../135-xdg-utils_1.1.3-2ubuntu2_all.deb ... Unpacking xdg-utils (1.1.3-2ubuntu2) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../136-libpixman-1-0_0.40.0-1build2_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.40.0-1build2) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../137-libxcb-render0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../138-libxcb-shm0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../139-libxrender1_1%3a0.9.10-1build2_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1build2) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../140-libcairo2_1.16.0-5ubuntu1_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-5ubuntu1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../141-libcurl4_7.74.0-1ubuntu2_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1ubuntu2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../142-fontconfig_2.13.1-4.2ubuntu3_amd64.deb ... Unpacking fontconfig (2.13.1-4.2ubuntu3) ... Selecting previously unselected package libthai-data. Preparing to unpack .../143-libthai-data_0.1.28-4_all.deb ... Unpacking libthai-data (0.1.28-4) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../144-libdatrie1_0.2.13-1ubuntu2_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.13-1ubuntu2) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../145-libthai0_0.1.28-4_amd64.deb ... Unpacking libthai0:amd64 (0.1.28-4) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../146-libpango-1.0-0_1.48.2-1build2_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.48.2-1build2) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../147-libpangoft2-1.0-0_1.48.2-1build2_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.48.2-1build2) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../148-libpangocairo-1.0-0_1.48.2-1build2_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.48.2-1build2) ... Selecting previously unselected package libtcl8.6:amd64. Preparing to unpack .../149-libtcl8.6_8.6.11+dfsg-1_amd64.deb ... Unpacking libtcl8.6:amd64 (8.6.11+dfsg-1) ... Selecting previously unselected package libxft2:amd64. Preparing to unpack .../150-libxft2_2.3.3-0ubuntu3_amd64.deb ... Unpacking libxft2:amd64 (2.3.3-0ubuntu3) ... Selecting previously unselected package x11-common. Preparing to unpack .../151-x11-common_1%3a7.7+22ubuntu1_all.deb ... Unpacking x11-common (1:7.7+22ubuntu1) ... Selecting previously unselected package libxss1:amd64. Preparing to unpack .../152-libxss1_1%3a1.2.3-1_amd64.deb ... Unpacking libxss1:amd64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:amd64. Preparing to unpack .../153-libtk8.6_8.6.11-2_amd64.deb ... Unpacking libtk8.6:amd64 (8.6.11-2) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../154-libice6_2%3a1.0.10-1_amd64.deb ... Unpacking libice6:amd64 (2:1.0.10-1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../155-libsm6_2%3a1.2.3-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../156-libxt6_1%3a1.2.0-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.2.0-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../157-r-base-core_4.0.4-1build1_amd64.deb ... Unpacking r-base-core (4.0.4-1build1) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../158-r-bioc-biocgenerics_0.36.0-1_all.deb ... Unpacking r-bioc-biocgenerics (0.36.0-1) ... Selecting previously unselected package r-bioc-dnacopy. Preparing to unpack .../159-r-bioc-dnacopy_1.64.0-1_amd64.deb ... Unpacking r-bioc-dnacopy (1.64.0-1) ... Selecting previously unselected package cnvkit. Preparing to unpack .../160-cnvkit_0.9.8-1_amd64.deb ... Unpacking cnvkit (0.9.8-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../161-libdebhelper-perl_13.3.4ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.3.4ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../162-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../163-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../164-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../165-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../166-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../167-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libdw1:amd64. Preparing to unpack .../168-libdw1_0.183-6_amd64.deb ... Unpacking libdw1:amd64 (0.183-6) ... Selecting previously unselected package debugedit. Preparing to unpack .../169-debugedit_1%3a0.1-0ubuntu2_amd64.deb ... Unpacking debugedit (1:0.1-0ubuntu2) ... Selecting previously unselected package dwz. Preparing to unpack .../170-dwz_0.14-1_amd64.deb ... Unpacking dwz (0.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../171-gettext_0.21-3ubuntu2_amd64.deb ... Unpacking gettext (0.21-3ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../172-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../173-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../174-debhelper_13.3.4ubuntu1_all.deb ... Unpacking debhelper (13.3.4ubuntu1) ... Selecting previously unselected package libglvnd0:amd64. Preparing to unpack .../175-libglvnd0_1.3.2-1_amd64.deb ... Unpacking libglvnd0:amd64 (1.3.2-1) ... Selecting previously unselected package libglapi-mesa:amd64. Preparing to unpack .../176-libglapi-mesa_21.0.1-2_amd64.deb ... Unpacking libglapi-mesa:amd64 (21.0.1-2) ... Selecting previously unselected package libx11-xcb1:amd64. Preparing to unpack .../177-libx11-xcb1_2%3a1.7.0-2build2_amd64.deb ... Unpacking libx11-xcb1:amd64 (2:1.7.0-2build2) ... Selecting previously unselected package libxcb-dri2-0:amd64. Preparing to unpack .../178-libxcb-dri2-0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-dri2-0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxcb-dri3-0:amd64. Preparing to unpack .../179-libxcb-dri3-0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-dri3-0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxcb-glx0:amd64. Preparing to unpack .../180-libxcb-glx0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-glx0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxcb-present0:amd64. Preparing to unpack .../181-libxcb-present0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-present0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxcb-sync1:amd64. Preparing to unpack .../182-libxcb-sync1_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-sync1:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxcb-xfixes0:amd64. Preparing to unpack .../183-libxcb-xfixes0_1.14-3ubuntu1_amd64.deb ... Unpacking libxcb-xfixes0:amd64 (1.14-3ubuntu1) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../184-libxfixes3_1%3a5.0.3-2build1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.3-2build1) ... Selecting previously unselected package libxshmfence1:amd64. Preparing to unpack .../185-libxshmfence1_1.3-1build2_amd64.deb ... Unpacking libxshmfence1:amd64 (1.3-1build2) ... Selecting previously unselected package libxxf86vm1:amd64. Preparing to unpack .../186-libxxf86vm1_1%3a1.1.4-1build1_amd64.deb ... Unpacking libxxf86vm1:amd64 (1:1.1.4-1build1) ... Selecting previously unselected package libdrm-amdgpu1:amd64. Preparing to unpack .../187-libdrm-amdgpu1_2.4.104-1build1_amd64.deb ... Unpacking libdrm-amdgpu1:amd64 (2.4.104-1build1) ... Selecting previously unselected package libpciaccess0:amd64. Preparing to unpack .../188-libpciaccess0_0.16-1build2_amd64.deb ... Unpacking libpciaccess0:amd64 (0.16-1build2) ... Selecting previously unselected package libdrm-intel1:amd64. Preparing to unpack .../189-libdrm-intel1_2.4.104-1build1_amd64.deb ... Unpacking libdrm-intel1:amd64 (2.4.104-1build1) ... Selecting previously unselected package libdrm-nouveau2:amd64. Preparing to unpack .../190-libdrm-nouveau2_2.4.104-1build1_amd64.deb ... Unpacking libdrm-nouveau2:amd64 (2.4.104-1build1) ... Selecting previously unselected package libdrm-radeon1:amd64. Preparing to unpack .../191-libdrm-radeon1_2.4.104-1build1_amd64.deb ... Unpacking libdrm-radeon1:amd64 (2.4.104-1build1) ... Selecting previously unselected package libllvm11:amd64. Preparing to unpack .../192-libllvm11_1%3a11.0.1-2ubuntu2_amd64.deb ... Unpacking libllvm11:amd64 (1:11.0.1-2ubuntu2) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../193-libsensors-config_1%3a3.6.0-7_all.deb ... Unpacking libsensors-config (1:3.6.0-7) ... Selecting previously unselected package libsensors5:amd64. Preparing to unpack .../194-libsensors5_1%3a3.6.0-7_amd64.deb ... Unpacking libsensors5:amd64 (1:3.6.0-7) ... Selecting previously unselected package libvulkan1:amd64. Preparing to unpack .../195-libvulkan1_1.2.162.0-1_amd64.deb ... Unpacking libvulkan1:amd64 (1.2.162.0-1) ... Selecting previously unselected package libgl1-mesa-dri:amd64. Preparing to unpack .../196-libgl1-mesa-dri_21.0.1-2_amd64.deb ... Unpacking libgl1-mesa-dri:amd64 (21.0.1-2) ... Selecting previously unselected package libglx-mesa0:amd64. Preparing to unpack .../197-libglx-mesa0_21.0.1-2_amd64.deb ... Unpacking libglx-mesa0:amd64 (21.0.1-2) ... Selecting previously unselected package libglx0:amd64. Preparing to unpack .../198-libglx0_1.3.2-1_amd64.deb ... Unpacking libglx0:amd64 (1.3.2-1) ... Selecting previously unselected package libgl1:amd64. Preparing to unpack .../199-libgl1_1.3.2-1_amd64.deb ... Unpacking libgl1:amd64 (1.3.2-1) ... Selecting previously unselected package libgif7:amd64. Preparing to unpack .../200-libgif7_5.1.9-2_amd64.deb ... Unpacking libgif7:amd64 (5.1.9-2) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../201-libxi6_2%3a1.7.10-1build2_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.10-1build2) ... Selecting previously unselected package libxtst6:amd64. Preparing to unpack .../202-libxtst6_2%3a1.2.3-1build2_amd64.deb ... Unpacking libxtst6:amd64 (2:1.2.3-1build2) ... Selecting previously unselected package openjdk-11-jre:amd64. Preparing to unpack .../203-openjdk-11-jre_11.0.11+8-0ubuntu2_amd64.deb ... Unpacking openjdk-11-jre:amd64 (11.0.11+8-0ubuntu2) ... Selecting previously unselected package default-jre. Preparing to unpack .../204-default-jre_2%3a1.11-72_amd64.deb ... Unpacking default-jre (2:1.11-72) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../205-python3-lib2to3_3.9.4-0ubuntu1_all.deb ... Unpacking python3-lib2to3 (3.9.4-0ubuntu1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../206-python3-distutils_3.9.4-0ubuntu1_all.deb ... Unpacking python3-distutils (3.9.4-0ubuntu1) ... Selecting previously unselected package dh-python. Preparing to unpack .../207-dh-python_4.20201102ubuntu4_all.deb ... Unpacking dh-python (4.20201102ubuntu4) ... Selecting previously unselected package xml-core. Preparing to unpack .../208-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../209-docutils-common_0.16+dfsg-3_all.deb ... Unpacking docutils-common (0.16+dfsg-3) ... Selecting previously unselected package libcommons-math3-java. Preparing to unpack .../210-libcommons-math3-java_3.6.1-3_all.deb ... Unpacking libcommons-math3-java (3.6.1-3) ... Selecting previously unselected package libjbzip2-java. Preparing to unpack .../211-libjbzip2-java_0.9.1-5_all.deb ... Unpacking libjbzip2-java (0.9.1-5) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../212-libapache-pom-java_18-1_all.deb ... Unpacking libapache-pom-java (18-1) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../213-libcommons-parent-java_43-1_all.deb ... Unpacking libcommons-parent-java (43-1) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../214-libcommons-compress-java_1.20-1_all.deb ... Unpacking libcommons-compress-java (1.20-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../215-libcommons-logging-java_1.2-2_all.deb ... Unpacking libcommons-logging-java (1.2-2) ... Selecting previously unselected package libcommons-jexl2-java. Preparing to unpack .../216-libcommons-jexl2-java_2.1.1-5_all.deb ... Unpacking libcommons-jexl2-java (2.1.1-5) ... Selecting previously unselected package libactivation-java. Preparing to unpack .../217-libactivation-java_1.2.0-2_all.deb ... Unpacking libactivation-java (1.2.0-2) ... Selecting previously unselected package libargs4j-java. Preparing to unpack .../218-libargs4j-java_2.33-1.1_all.deb ... Unpacking libargs4j-java (2.33-1.1) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../219-libjaxen-java_1.1.6-4_all.deb ... Unpacking libjaxen-java (1.1.6-4) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../220-libdom4j-java_2.1.3-1_all.deb ... Unpacking libdom4j-java (2.1.3-1) ... Selecting previously unselected package libcommons-io-java. Preparing to unpack .../221-libcommons-io-java_2.8.0-1_all.deb ... Unpacking libcommons-io-java (2.8.0-1) ... Selecting previously unselected package libmaven-shared-utils-java. Preparing to unpack .../222-libmaven-shared-utils-java_3.3.0-1_all.deb ... Unpacking libmaven-shared-utils-java (3.3.0-1) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../223-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../224-libcommons-cli-java_1.4-2_all.deb ... Unpacking libcommons-cli-java (1.4-2) ... Selecting previously unselected package libcommons-lang3-java. Preparing to unpack .../225-libcommons-lang3-java_3.11-1_all.deb ... Unpacking libcommons-lang3-java (3.11-1) ... Selecting previously unselected package libgeronimo-annotation-1.3-spec-java. Preparing to unpack .../226-libgeronimo-annotation-1.3-spec-java_1.3-1_all.deb ... Unpacking libgeronimo-annotation-1.3-spec-java (1.3-1) ... Selecting previously unselected package libaopalliance-java. Preparing to unpack .../227-libaopalliance-java_20070526-6_all.deb ... Unpacking libaopalliance-java (20070526-6) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../228-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../229-libguava-java_29.0-6_all.deb ... Unpacking libguava-java (29.0-6) ... Selecting previously unselected package libguice-java. Preparing to unpack .../230-libguice-java_4.2.3-2_all.deb ... Unpacking libguice-java (4.2.3-2) ... Selecting previously unselected package libmaven-parent-java. Preparing to unpack .../231-libmaven-parent-java_31-2_all.deb ... Unpacking libmaven-parent-java (31-2) ... Selecting previously unselected package libplexus-utils2-java. Preparing to unpack .../232-libplexus-utils2-java_3.3.0-1_all.deb ... Unpacking libplexus-utils2-java (3.3.0-1) ... Selecting previously unselected package libwagon-provider-api-java. Preparing to unpack .../233-libwagon-provider-api-java_3.3.4-1_all.deb ... Unpacking libwagon-provider-api-java (3.3.4-1) ... Selecting previously unselected package libmaven-resolver-java. Preparing to unpack .../234-libmaven-resolver-java_1.4.2-3build1_all.deb ... Unpacking libmaven-resolver-java (1.4.2-3build1) ... Selecting previously unselected package libplexus-cipher-java. Preparing to unpack .../235-libplexus-cipher-java_1.8-2_all.deb ... Unpacking libplexus-cipher-java (1.8-2) ... Selecting previously unselected package libplexus-classworlds-java. Preparing to unpack .../236-libplexus-classworlds-java_2.6.0-1_all.deb ... Unpacking libplexus-classworlds-java (2.6.0-1) ... Selecting previously unselected package libplexus-component-annotations-java. Preparing to unpack .../237-libplexus-component-annotations-java_2.1.0-1_all.deb ... Unpacking libplexus-component-annotations-java (2.1.0-1) ... Selecting previously unselected package libplexus-interpolation-java. Preparing to unpack .../238-libplexus-interpolation-java_1.26-1_all.deb ... Unpacking libplexus-interpolation-java (1.26-1) ... Selecting previously unselected package libplexus-sec-dispatcher-java. Preparing to unpack .../239-libplexus-sec-dispatcher-java_1.4-4_all.deb ... Unpacking libplexus-sec-dispatcher-java (1.4-4) ... Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java. Preparing to unpack .../240-libgeronimo-interceptor-3.0-spec-java_1.0.1-4fakesync_all.deb ... Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... Selecting previously unselected package libcdi-api-java. Preparing to unpack .../241-libcdi-api-java_1.2-3_all.deb ... Unpacking libcdi-api-java (1.2-3) ... Selecting previously unselected package libslf4j-java. Preparing to unpack .../242-libslf4j-java_1.7.30-1_all.deb ... Unpacking libslf4j-java (1.7.30-1) ... Selecting previously unselected package libsisu-inject-java. Preparing to unpack .../243-libsisu-inject-java_0.3.4-2_all.deb ... Unpacking libsisu-inject-java (0.3.4-2) ... Selecting previously unselected package libsisu-plexus-java. Preparing to unpack .../244-libsisu-plexus-java_0.3.4-3_all.deb ... Unpacking libsisu-plexus-java (0.3.4-3) ... Selecting previously unselected package libmaven3-core-java. Preparing to unpack .../245-libmaven3-core-java_3.6.3-5_all.deb ... Unpacking libmaven3-core-java (3.6.3-5) ... Selecting previously unselected package libmaven-shared-io-java. Preparing to unpack .../246-libmaven-shared-io-java_3.0.0-3_all.deb ... Unpacking libmaven-shared-io-java (3.0.0-3) ... Selecting previously unselected package libmaven-file-management-java. Preparing to unpack .../247-libmaven-file-management-java_3.0.0-1_all.deb ... Unpacking libmaven-file-management-java (3.0.0-1) ... Selecting previously unselected package libplexus-io-java. Preparing to unpack .../248-libplexus-io-java_3.2.0-1.1_all.deb ... Unpacking libplexus-io-java (3.2.0-1.1) ... Selecting previously unselected package libsnappy1v5:amd64. Preparing to unpack .../249-libsnappy1v5_1.1.8-1build1_amd64.deb ... Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... Selecting previously unselected package libsnappy-jni. Preparing to unpack .../250-libsnappy-jni_1.1.8.3-1_amd64.deb ... Unpacking libsnappy-jni (1.1.8.3-1) ... Selecting previously unselected package libsnappy-java. Preparing to unpack .../251-libsnappy-java_1.1.8.3-1_all.deb ... Unpacking libsnappy-java (1.1.8.3-1) ... Selecting previously unselected package libxz-java. Preparing to unpack .../252-libxz-java_1.8-2_all.deb ... Unpacking libxz-java (1.8-2) ... Selecting previously unselected package libplexus-archiver-java. Preparing to unpack .../253-libplexus-archiver-java_3.6.0-2_all.deb ... Unpacking libplexus-archiver-java (3.6.0-2) ... Selecting previously unselected package libhttpcore-java. Preparing to unpack .../254-libhttpcore-java_4.4.14-1_all.deb ... Unpacking libhttpcore-java (4.4.14-1) ... Selecting previously unselected package libcommons-codec-java. Preparing to unpack .../255-libcommons-codec-java_1.15-1_all.deb ... Unpacking libcommons-codec-java (1.15-1) ... Selecting previously unselected package libhttpclient-java. Preparing to unpack .../256-libhttpclient-java_4.5.13-1_all.deb ... Unpacking libhttpclient-java (4.5.13-1) ... Selecting previously unselected package libjsoup-java. Preparing to unpack .../257-libjsoup-java_1.10.2-2_all.deb ... Unpacking libjsoup-java (1.10.2-2) ... Selecting previously unselected package libwagon-http-java. Preparing to unpack .../258-libwagon-http-java_3.3.4-1_all.deb ... Unpacking libwagon-http-java (3.3.4-1) ... Selecting previously unselected package libistack-commons-java. Preparing to unpack .../259-libistack-commons-java_3.0.6-5_all.deb ... Unpacking libistack-commons-java (3.0.6-5) ... Selecting previously unselected package libcodemodel-java. Preparing to unpack .../260-libcodemodel-java_2.6+jaxb2.3.0.1-10_all.deb ... Unpacking libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Selecting previously unselected package librelaxng-datatype-java. Preparing to unpack .../261-librelaxng-datatype-java_1.0+ds1-3.1_all.deb ... Unpacking librelaxng-datatype-java (1.0+ds1-3.1) ... Selecting previously unselected package librngom-java. Preparing to unpack .../262-librngom-java_2.3.0.1-10_all.deb ... Unpacking librngom-java (2.3.0.1-10) ... Selecting previously unselected package libxsom-java. Preparing to unpack .../263-libxsom-java_2.3.0.1-10_all.deb ... Unpacking libxsom-java (2.3.0.1-10) ... Selecting previously unselected package libtxw2-java. Preparing to unpack .../264-libtxw2-java_2.3.0.1-10_all.deb ... Unpacking libtxw2-java (2.3.0.1-10) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../265-libxml-commons-resolver1.1-java_1.2-11_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-11) ... Selecting previously unselected package libdtd-parser-java. Preparing to unpack .../266-libdtd-parser-java_1.2-1_all.deb ... Unpacking libdtd-parser-java (1.2-1) ... Selecting previously unselected package libjaxb-api-java. Preparing to unpack .../267-libjaxb-api-java_2.3.1-1_all.deb ... Unpacking libjaxb-api-java (2.3.1-1) ... Selecting previously unselected package libstax-ex-java. Preparing to unpack .../268-libstax-ex-java_1.7.8-3_all.deb ... Unpacking libstax-ex-java (1.7.8-3) ... Selecting previously unselected package libstreambuffer-java. Preparing to unpack .../269-libstreambuffer-java_1.5.4-1.1_all.deb ... Unpacking libstreambuffer-java (1.5.4-1.1) ... Selecting previously unselected package libfastinfoset-java. Preparing to unpack .../270-libfastinfoset-java_1.2.12-3_all.deb ... Unpacking libfastinfoset-java (1.2.12-3) ... Selecting previously unselected package libjaxb-java. Preparing to unpack .../271-libjaxb-java_2.3.0.1-10_all.deb ... Unpacking libjaxb-java (2.3.0.1-10) ... Selecting previously unselected package libngs-sdk2:amd64. Preparing to unpack .../272-libngs-sdk2_2.10.9-1_amd64.deb ... Unpacking libngs-sdk2:amd64 (2.10.9-1) ... Selecting previously unselected package libngs-sdk-dev:amd64. Preparing to unpack .../273-libngs-sdk-dev_2.10.9-1_amd64.deb ... Unpacking libngs-sdk-dev:amd64 (2.10.9-1) ... Selecting previously unselected package libngs-java:amd64. Preparing to unpack .../274-libngs-java_2.10.9-1_amd64.deb ... Unpacking libngs-java:amd64 (2.10.9-1) ... Selecting previously unselected package libhtsjdk-java. Preparing to unpack .../275-libhtsjdk-java_2.23.0+dfsg-2_all.deb ... Unpacking libhtsjdk-java (2.23.0+dfsg-2) ... Selecting previously unselected package libfindbin-libs-perl. Preparing to unpack .../276-libfindbin-libs-perl_2.190.02-1_all.deb ... Unpacking libfindbin-libs-perl (2.190.02-1) ... Selecting previously unselected package libsis-base-jni. Preparing to unpack .../277-libsis-base-jni_18.09~pre1+git20180928.45fbd31+dfsg-3_amd64.deb ... Unpacking libsis-base-jni (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Selecting previously unselected package libsis-base-java. Preparing to unpack .../278-libsis-base-java_18.09~pre1+git20180928.45fbd31+dfsg-3_all.deb ... Unpacking libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Selecting previously unselected package libaec0:amd64. Preparing to unpack .../279-libaec0_1.0.4-1_amd64.deb ... Unpacking libaec0:amd64 (1.0.4-1) ... Selecting previously unselected package libsz2:amd64. Preparing to unpack .../280-libsz2_1.0.4-1_amd64.deb ... Unpacking libsz2:amd64 (1.0.4-1) ... Selecting previously unselected package libhdf5-103-1:amd64. Preparing to unpack .../281-libhdf5-103-1_1.10.6+repack-2_amd64.deb ... Unpacking libhdf5-103-1:amd64 (1.10.6+repack-2) ... Selecting previously unselected package libsis-jhdf5-jni. Preparing to unpack .../282-libsis-jhdf5-jni_19.04.0+dfsg-4_amd64.deb ... Unpacking libsis-jhdf5-jni (19.04.0+dfsg-4) ... Selecting previously unselected package libsis-jhdf5-java. Preparing to unpack .../283-libsis-jhdf5-java_19.04.0+dfsg-4_all.deb ... Unpacking libsis-jhdf5-java (19.04.0+dfsg-4) ... Selecting previously unselected package fastqc. Preparing to unpack .../284-fastqc_0.11.9+dfsg-4_all.deb ... Unpacking fastqc (0.11.9+dfsg-4) ... Selecting previously unselected package fonts-font-awesome. Preparing to unpack .../285-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4_all.deb ... Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4) ... Selecting previously unselected package fonts-glyphicons-halflings. Preparing to unpack .../286-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-2_all.deb ... Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../287-fonts-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking fonts-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package libfml0:amd64. Preparing to unpack .../288-libfml0_0.1+git20190320.b499514-1_amd64.deb ... Unpacking libfml0:amd64 (0.1+git20190320.b499514-1) ... Selecting previously unselected package libjsoncpp24:amd64. Preparing to unpack .../289-libjsoncpp24_1.9.4-4_amd64.deb ... Unpacking libjsoncpp24:amd64 (1.9.4-4) ... Selecting previously unselected package libssw0:amd64. Preparing to unpack .../290-libssw0_1.1-13_amd64.deb ... Unpacking libssw0:amd64 (1.1-13) ... Selecting previously unselected package libseqlib2:amd64. Preparing to unpack .../291-libseqlib2_1.2.0+dfsg-4_amd64.deb ... Unpacking libseqlib2:amd64 (1.2.0+dfsg-4) ... Selecting previously unselected package libtabixpp0:amd64. Preparing to unpack .../292-libtabixpp0_1.1.0-4ubuntu1_amd64.deb ... Unpacking libtabixpp0:amd64 (1.1.0-4ubuntu1) ... Selecting previously unselected package libdisorder0:amd64. Preparing to unpack .../293-libdisorder0_0.0.2+git20130809.8062ee1-2_amd64.deb ... Unpacking libdisorder0:amd64 (0.0.2+git20130809.8062ee1-2) ... Selecting previously unselected package libfastahack0. Preparing to unpack .../294-libfastahack0_1.0.0+dfsg-7_amd64.deb ... Unpacking libfastahack0 (1.0.0+dfsg-7) ... Selecting previously unselected package libsmithwaterman0. Preparing to unpack .../295-libsmithwaterman0_0.0+git20160702.2610e25-11_amd64.deb ... Unpacking libsmithwaterman0 (0.0+git20160702.2610e25-11) ... Selecting previously unselected package libvcflib1:amd64. Preparing to unpack .../296-libvcflib1_1.0.2+dfsg-2_amd64.deb ... Unpacking libvcflib1:amd64 (1.0.2+dfsg-2) ... Selecting previously unselected package freebayes. Preparing to unpack .../297-freebayes_1.3.5-1_amd64.deb ... Unpacking freebayes (1.3.5-1) ... Selecting previously unselected package libgclib2:amd64. Preparing to unpack .../298-libgclib2_0.11.10+ds-2_amd64.deb ... Unpacking libgclib2:amd64 (0.11.10+ds-2) ... Selecting previously unselected package gffread. Preparing to unpack .../299-gffread_0.12.1-4_amd64.deb ... Unpacking gffread (0.12.1-4) ... Selecting previously unselected package tabix. Preparing to unpack .../300-tabix_1.11-4_amd64.deb ... Unpacking tabix (1.11-4) ... Selecting previously unselected package grabix. Preparing to unpack .../301-grabix_0.1.7-2build1_amd64.deb ... Unpacking grabix (0.1.7-2build1) ... Selecting previously unselected package gsort. Preparing to unpack .../302-gsort_0.1.4-3_amd64.deb ... Unpacking gsort (0.1.4-3) ... Selecting previously unselected package hisat2. Preparing to unpack .../303-hisat2_2.2.1-2_amd64.deb ... Unpacking hisat2 (2.2.1-2) ... Selecting previously unselected package nim. Preparing to unpack .../304-nim_1.4.2-1_amd64.deb ... Unpacking nim (1.4.2-1) ... Selecting previously unselected package nim-hts-dev. Preparing to unpack .../305-nim-hts-dev_0.3.14+ds-1_all.deb ... Unpacking nim-hts-dev (0.3.14+ds-1) ... Selecting previously unselected package hts-nim-tools. Preparing to unpack .../306-hts-nim-tools_0.2.1-1_amd64.deb ... Unpacking hts-nim-tools (0.2.1-1) ... Selecting previously unselected package libbamtools2.5.1:amd64. Preparing to unpack .../307-libbamtools2.5.1_2.5.1+dfsg-8_amd64.deb ... Unpacking libbamtools2.5.1:amd64 (2.5.1+dfsg-8) ... Selecting previously unselected package libfreemarker-java. Preparing to unpack .../308-libfreemarker-java_2.3.23-11_all.deb ... Unpacking libfreemarker-java (2.3.23-11) ... Selecting previously unselected package libjoptsimple-java. Preparing to unpack .../309-libjoptsimple-java_5.0.4-4_all.deb ... Unpacking libjoptsimple-java (5.0.4-4) ... Selecting previously unselected package libgoogle-gson-java. Preparing to unpack .../310-libgoogle-gson-java_2.8.6-1_all.deb ... Unpacking libgoogle-gson-java (2.8.6-1) ... Selecting previously unselected package liblightcouch-java. Preparing to unpack .../311-liblightcouch-java_0.0.6-1.1_all.deb ... Unpacking liblightcouch-java (0.0.6-1.1) ... Selecting previously unselected package libmongodb-java. Preparing to unpack .../312-libmongodb-java_3.6.3-2_all.deb ... Unpacking libmongodb-java (3.6.3-2) ... Selecting previously unselected package liblog4j2-java. Preparing to unpack .../313-liblog4j2-java_2.13.3-1_all.deb ... Unpacking liblog4j2-java (2.13.3-1) ... Selecting previously unselected package libbarclay-java. Preparing to unpack .../314-libbarclay-java_2.1.0-3.1_all.deb ... Unpacking libbarclay-java (2.1.0-3.1) ... Selecting previously unselected package libblosc1. Preparing to unpack .../315-libblosc1_1.20.1+ds1-2_amd64.deb ... Unpacking libblosc1 (1.20.1+ds1-2) ... Selecting previously unselected package libboost1.74-dev:amd64. Preparing to unpack .../316-libboost1.74-dev_1.74.0-8ubuntu2_amd64.deb ... Unpacking libboost1.74-dev:amd64 (1.74.0-8ubuntu2) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../317-libboost-dev_1.74.0.3ubuntu5_amd64.deb ... Unpacking libboost-dev:amd64 (1.74.0.3ubuntu5) ... Selecting previously unselected package libboost-filesystem1.74.0:amd64. Preparing to unpack .../318-libboost-filesystem1.74.0_1.74.0-8ubuntu2_amd64.deb ... Unpacking libboost-filesystem1.74.0:amd64 (1.74.0-8ubuntu2) ... Selecting previously unselected package libboost-iostreams1.74.0:amd64. Preparing to unpack .../319-libboost-iostreams1.74.0_1.74.0-8ubuntu2_amd64.deb ... Unpacking libboost-iostreams1.74.0:amd64 (1.74.0-8ubuntu2) ... Selecting previously unselected package libboost-program-options1.74.0:amd64. Preparing to unpack .../320-libboost-program-options1.74.0_1.74.0-8ubuntu2_amd64.deb ... Unpacking libboost-program-options1.74.0:amd64 (1.74.0-8ubuntu2) ... Selecting previously unselected package libcmark-gfm0:amd64. Preparing to unpack .../321-libcmark-gfm0_0.29.0.gfm.0-6_amd64.deb ... Unpacking libcmark-gfm0:amd64 (0.29.0.gfm.0-6) ... Selecting previously unselected package libcmark-gfm-extensions0:amd64. Preparing to unpack .../322-libcmark-gfm-extensions0_0.29.0.gfm.0-6_amd64.deb ... Unpacking libcmark-gfm-extensions0:amd64 (0.29.0.gfm.0-6) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../323-libdivsufsort3_2.0.1-5_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-5) ... Selecting previously unselected package libgatk-native-bindings-java. Preparing to unpack .../324-libgatk-native-bindings-java_1.0.0-2.1_all.deb ... Unpacking libgatk-native-bindings-java (1.0.0-2.1) ... Selecting previously unselected package libgkl-java. Preparing to unpack .../325-libgkl-java_0.8.7+dfsg-1_all.deb ... Unpacking libgkl-java (0.8.7+dfsg-1) ... Selecting previously unselected package libgzstream0. Preparing to unpack .../326-libgzstream0_1.5+dfsg-5_amd64.deb ... Unpacking libgzstream0 (1.5+dfsg-5) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../327-libhtscodecs2_0.5-3_amd64.deb ... Unpacking libhtscodecs2:amd64 (0.5-3) ... Selecting previously unselected package libjemalloc2:amd64. Preparing to unpack .../328-libjemalloc2_5.2.1-2_amd64.deb ... Unpacking libjemalloc2:amd64 (5.2.1-2) ... Selecting previously unselected package libjs-bootstrap. Preparing to unpack .../329-libjs-bootstrap_3.4.1+dfsg-2_all.deb ... Unpacking libjs-bootstrap (3.4.1+dfsg-2) ... Selecting previously unselected package libjs-d3. Preparing to unpack .../330-libjs-d3_3.5.17-4_all.deb ... Unpacking libjs-d3 (3.5.17-4) ... Selecting previously unselected package libjs-es5-shim. Preparing to unpack .../331-libjs-es5-shim_4.5.15-1_all.deb ... Unpacking libjs-es5-shim (4.5.15-1) ... Selecting previously unselected package libjs-highlight.js. Preparing to unpack .../332-libjs-highlight.js_9.18.5+dfsg1-1_all.deb ... Unpacking libjs-highlight.js (9.18.5+dfsg1-1) ... Selecting previously unselected package libjs-jquery-datatables. Preparing to unpack .../333-libjs-jquery-datatables_1.10.21+dfsg-1_all.deb ... Unpacking libjs-jquery-datatables (1.10.21+dfsg-1) ... Selecting previously unselected package libjs-jquery-metadata. Preparing to unpack .../334-libjs-jquery-metadata_12-3_all.deb ... Unpacking libjs-jquery-metadata (12-3) ... Selecting previously unselected package libjs-sifter.js. Preparing to unpack .../335-libjs-sifter.js_0.6.0+dfsg-1_all.deb ... Unpacking libjs-sifter.js (0.6.0+dfsg-1) ... Selecting previously unselected package libjs-microplugin.js. Preparing to unpack .../336-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... Selecting previously unselected package libjs-jquery-selectize.js. Preparing to unpack .../337-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Selecting previously unselected package libjs-jquery-tablesorter. Preparing to unpack .../338-libjs-jquery-tablesorter_1%3a2.31.3+dfsg1-1_all.deb ... Unpacking libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ... Selecting previously unselected package libjs-json. Preparing to unpack .../339-libjs-json_0~20190826+~1.0.5-2_all.deb ... Unpacking libjs-json (0~20190826+~1.0.5-2) ... Selecting previously unselected package libjs-prettify. Preparing to unpack .../340-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../341-libjs-underscore_1.9.1~dfsg-1_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../342-libjs-sphinxdoc_3.5.3-1_all.deb ... Unpacking libjs-sphinxdoc (3.5.3-1) ... Selecting previously unselected package libc-ares2:amd64. Preparing to unpack .../343-libc-ares2_1.17.1-1_amd64.deb ... Unpacking libc-ares2:amd64 (1.17.1-1) ... Selecting previously unselected package libnode72:amd64. Preparing to unpack .../344-libnode72_12.21.0~dfsg-3ubuntu1_amd64.deb ... Unpacking libnode72:amd64 (12.21.0~dfsg-3ubuntu1) ... Selecting previously unselected package libpicard-java. Preparing to unpack .../345-libpicard-java_2.24.1+dfsg-1_all.deb ... Unpacking libpicard-java (2.24.1+dfsg-1) ... Selecting previously unselected package libstaden-read14:amd64. Preparing to unpack .../346-libstaden-read14_1.14.13-4_amd64.deb ... Unpacking libstaden-read14:amd64 (1.14.13-4) ... Selecting previously unselected package r-cran-littler. Preparing to unpack .../347-r-cran-littler_0.3.12-1_amd64.deb ... Unpacking r-cran-littler (0.3.12-1) ... Selecting previously unselected package littler. Preparing to unpack .../348-littler_0.3.12-1_all.deb ... Unpacking littler (0.3.12-1) ... Selecting previously unselected package r-cran-pkgkitten. Preparing to unpack .../349-r-cran-pkgkitten_0.2.1-1_all.deb ... Unpacking r-cran-pkgkitten (0.2.1-1) ... Selecting previously unselected package r-cran-rcpp. Preparing to unpack .../350-r-cran-rcpp_1.0.6-1_amd64.deb ... Unpacking r-cran-rcpp (1.0.6-1) ... Selecting previously unselected package r-cran-plyr. Preparing to unpack .../351-r-cran-plyr_1.8.6-2build1_amd64.deb ... Unpacking r-cran-plyr (1.8.6-2build1) ... Selecting previously unselected package r-cran-digest. Preparing to unpack .../352-r-cran-digest_0.6.27-1_amd64.deb ... Unpacking r-cran-digest (0.6.27-1) ... Selecting previously unselected package r-cran-glue. Preparing to unpack .../353-r-cran-glue_1.4.2-1_amd64.deb ... Unpacking r-cran-glue (1.4.2-1) ... Selecting previously unselected package r-cran-gtable. Preparing to unpack .../354-r-cran-gtable_0.3.0+dfsg-2build1_all.deb ... Unpacking r-cran-gtable (0.3.0+dfsg-2build1) ... Selecting previously unselected package r-cran-brio. Preparing to unpack .../355-r-cran-brio_1.1.1-1_amd64.deb ... Unpacking r-cran-brio (1.1.1-1) ... Selecting previously unselected package r-cran-ps. Preparing to unpack .../356-r-cran-ps_1.5.0-1_amd64.deb ... Unpacking r-cran-ps (1.5.0-1) ... Selecting previously unselected package r-cran-r6. Preparing to unpack .../357-r-cran-r6_2.5.0-1_all.deb ... Unpacking r-cran-r6 (2.5.0-1) ... Selecting previously unselected package r-cran-processx. Preparing to unpack .../358-r-cran-processx_3.4.5-1_amd64.deb ... Unpacking r-cran-processx (3.4.5-1) ... Selecting previously unselected package r-cran-callr. Preparing to unpack .../359-r-cran-callr_3.5.1-1_all.deb ... Unpacking r-cran-callr (3.5.1-1) ... Selecting previously unselected package r-cran-assertthat. Preparing to unpack .../360-r-cran-assertthat_0.2.1-2build1_all.deb ... Unpacking r-cran-assertthat (0.2.1-2build1) ... Selecting previously unselected package r-cran-cli. Preparing to unpack .../361-r-cran-cli_2.3.0-1_all.deb ... Unpacking r-cran-cli (2.3.0-1) ... Selecting previously unselected package r-cran-crayon. Preparing to unpack .../362-r-cran-crayon_1.4.0-1_all.deb ... Unpacking r-cran-crayon (1.4.0-1) ... Selecting previously unselected package r-cran-rprojroot. Preparing to unpack .../363-r-cran-rprojroot_2.0.2-1_all.deb ... Unpacking r-cran-rprojroot (2.0.2-1) ... Selecting previously unselected package r-cran-desc. Preparing to unpack .../364-r-cran-desc_1.2.0-3build1_all.deb ... Unpacking r-cran-desc (1.2.0-3build1) ... Selecting previously unselected package r-cran-rlang. Preparing to unpack .../365-r-cran-rlang_0.4.10-1ubuntu1_amd64.deb ... Unpacking r-cran-rlang (0.4.10-1ubuntu1) ... Selecting previously unselected package r-cran-ellipsis. Preparing to unpack .../366-r-cran-ellipsis_0.3.1-1build1_amd64.deb ... Unpacking r-cran-ellipsis (0.3.1-1build1) ... Selecting previously unselected package r-cran-evaluate. Preparing to unpack .../367-r-cran-evaluate_0.14-2build1_all.deb ... Unpacking r-cran-evaluate (0.14-2build1) ... Selecting previously unselected package r-cran-jsonlite. Preparing to unpack .../368-r-cran-jsonlite_1.7.2+dfsg-1_amd64.deb ... Unpacking r-cran-jsonlite (1.7.2+dfsg-1) ... Selecting previously unselected package r-cran-lifecycle. Preparing to unpack .../369-r-cran-lifecycle_0.2.0-2build1_all.deb ... Unpacking r-cran-lifecycle (0.2.0-2build1) ... Selecting previously unselected package r-cran-magrittr. Preparing to unpack .../370-r-cran-magrittr_2.0.1-1_amd64.deb ... Unpacking r-cran-magrittr (2.0.1-1) ... Selecting previously unselected package r-cran-prettyunits. Preparing to unpack .../371-r-cran-prettyunits_1.1.1-2build1_all.deb ... Unpacking r-cran-prettyunits (1.1.1-2build1) ... Selecting previously unselected package r-cran-withr. Preparing to unpack .../372-r-cran-withr_2.4.1-1_all.deb ... Unpacking r-cran-withr (2.4.1-1) ... Selecting previously unselected package r-cran-pkgbuild. Preparing to unpack .../373-r-cran-pkgbuild_1.2.0-1_all.deb ... Unpacking r-cran-pkgbuild (1.2.0-1) ... Selecting previously unselected package r-cran-rstudioapi. Preparing to unpack .../374-r-cran-rstudioapi_0.13-1_all.deb ... Unpacking r-cran-rstudioapi (0.13-1) ... Selecting previously unselected package r-cran-pkgload. Preparing to unpack .../375-r-cran-pkgload_1.1.0-1_amd64.deb ... Unpacking r-cran-pkgload (1.1.0-1) ... Selecting previously unselected package r-cran-praise. Preparing to unpack .../376-r-cran-praise_1.0.0-4build1_all.deb ... Unpacking r-cran-praise (1.0.0-4build1) ... Selecting previously unselected package r-cran-diffobj. Preparing to unpack .../377-r-cran-diffobj_0.3.2-1_amd64.deb ... Unpacking r-cran-diffobj (0.3.2-1) ... Selecting previously unselected package r-cran-fansi. Preparing to unpack .../378-r-cran-fansi_0.4.2-1_amd64.deb ... Unpacking r-cran-fansi (0.4.2-1) ... Selecting previously unselected package r-cran-utf8. Preparing to unpack .../379-r-cran-utf8_1.1.4-2_amd64.deb ... Unpacking r-cran-utf8 (1.1.4-2) ... Selecting previously unselected package r-cran-vctrs. Preparing to unpack .../380-r-cran-vctrs_0.3.6-1_amd64.deb ... Unpacking r-cran-vctrs (0.3.6-1) ... Selecting previously unselected package r-cran-pillar. Preparing to unpack .../381-r-cran-pillar_1.4.7-1_all.deb ... Unpacking r-cran-pillar (1.4.7-1) ... Selecting previously unselected package r-cran-pkgconfig. Preparing to unpack .../382-r-cran-pkgconfig_2.0.3-2build1_all.deb ... Unpacking r-cran-pkgconfig (2.0.3-2build1) ... Selecting previously unselected package r-cran-tibble. Preparing to unpack .../383-r-cran-tibble_3.0.6+dfsg-1_amd64.deb ... Unpacking r-cran-tibble (3.0.6+dfsg-1) ... Selecting previously unselected package r-cran-rematch2. Preparing to unpack .../384-r-cran-rematch2_2.1.2-2build1_all.deb ... Unpacking r-cran-rematch2 (2.1.2-2build1) ... Selecting previously unselected package r-cran-waldo. Preparing to unpack .../385-r-cran-waldo_0.2.3-2_all.deb ... Unpacking r-cran-waldo (0.2.3-2) ... Selecting previously unselected package r-cran-testthat. Preparing to unpack .../386-r-cran-testthat_3.0.1-1_amd64.deb ... Unpacking r-cran-testthat (3.0.1-1) ... Selecting previously unselected package r-cran-isoband. Preparing to unpack .../387-r-cran-isoband_0.2.3-2_amd64.deb ... Unpacking r-cran-isoband (0.2.3-2) ... Selecting previously unselected package r-cran-mass. Preparing to unpack .../388-r-cran-mass_7.3-53.1-1_amd64.deb ... Unpacking r-cran-mass (7.3-53.1-1) ... Selecting previously unselected package r-cran-lattice. Preparing to unpack .../389-r-cran-lattice_0.20-41-1build1_amd64.deb ... Unpacking r-cran-lattice (0.20-41-1build1) ... Selecting previously unselected package r-cran-nlme. Preparing to unpack .../390-r-cran-nlme_3.1.152-1_amd64.deb ... Unpacking r-cran-nlme (3.1.152-1) ... Selecting previously unselected package r-cran-matrix. Preparing to unpack .../391-r-cran-matrix_1.3-2+really1.3-2-0ubuntu1_amd64.deb ... Unpacking r-cran-matrix (1.3-2+really1.3-2-0ubuntu1) ... Selecting previously unselected package r-cran-mgcv. Preparing to unpack .../392-r-cran-mgcv_1.8-34-1_amd64.deb ... Unpacking r-cran-mgcv (1.8-34-1) ... Selecting previously unselected package r-cran-farver. Preparing to unpack .../393-r-cran-farver_2.0.3-1build2_amd64.deb ... Unpacking r-cran-farver (2.0.3-1build2) ... Selecting previously unselected package r-cran-labeling. Preparing to unpack .../394-r-cran-labeling_0.4.2-1_all.deb ... Unpacking r-cran-labeling (0.4.2-1) ... Selecting previously unselected package r-cran-colorspace. Preparing to unpack .../395-r-cran-colorspace_2.0-0+dfsg-1_amd64.deb ... Unpacking r-cran-colorspace (2.0-0+dfsg-1) ... Selecting previously unselected package r-cran-munsell. Preparing to unpack .../396-r-cran-munsell_0.5.0-2build1_all.deb ... Unpacking r-cran-munsell (0.5.0-2build1) ... Selecting previously unselected package r-cran-rcolorbrewer. Preparing to unpack .../397-r-cran-rcolorbrewer_1.1-2-3_all.deb ... Unpacking r-cran-rcolorbrewer (1.1-2-3) ... Selecting previously unselected package r-cran-viridislite. Preparing to unpack .../398-r-cran-viridislite_0.3.0-4_all.deb ... Unpacking r-cran-viridislite (0.3.0-4) ... Selecting previously unselected package r-cran-scales. Preparing to unpack .../399-r-cran-scales_1.1.1-1build1_all.deb ... Unpacking r-cran-scales (1.1.1-1build1) ... Selecting previously unselected package r-cran-ggplot2. Preparing to unpack .../400-r-cran-ggplot2_3.3.3+dfsg-1_all.deb ... Unpacking r-cran-ggplot2 (3.3.3+dfsg-1) ... Selecting previously unselected package r-cran-gridbase. Preparing to unpack .../401-r-cran-gridbase_0.4-7-5build1_all.deb ... Unpacking r-cran-gridbase (0.4-7-5build1) ... Selecting previously unselected package libvcflib-tools. Preparing to unpack .../402-libvcflib-tools_1.0.2+dfsg-2_amd64.deb ... Unpacking libvcflib-tools (1.0.2+dfsg-2) ... Selecting previously unselected package samblaster. Preparing to unpack .../403-samblaster_0.1.26-1_amd64.deb ... Unpacking samblaster (0.1.26-1) ... Selecting previously unselected package samtools. Preparing to unpack .../404-samtools_1.11-1_amd64.deb ... Unpacking samtools (1.11-1) ... Selecting previously unselected package lumpy-sv. Preparing to unpack .../405-lumpy-sv_0.3.1+dfsg-5_amd64.deb ... Unpacking lumpy-sv (0.3.1+dfsg-5) ... Selecting previously unselected package mosdepth. Preparing to unpack .../406-mosdepth_0.3.1+ds-2_amd64.deb ... Unpacking mosdepth (0.3.1+ds-2) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../407-python3-colorama_0.4.4-1_all.deb ... Unpacking python3-colorama (0.4.4-1) ... Selecting previously unselected package python3-click. Preparing to unpack .../408-python3-click_7.1.2-1_all.deb ... Unpacking python3-click (7.1.2-1) ... Selecting previously unselected package python3-humanfriendly. Preparing to unpack .../409-python3-humanfriendly_9.1-1_all.deb ... Unpacking python3-humanfriendly (9.1-1) ... Selecting previously unselected package python3-coloredlogs. Preparing to unpack .../410-python3-coloredlogs_7.3-2_all.deb ... Unpacking python3-coloredlogs (7.3-2) ... Selecting previously unselected package python3-future. Preparing to unpack .../411-python3-future_0.18.2-5_all.deb ... Unpacking python3-future (0.18.2-5) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../412-python3-markupsafe_1.1.1-1build2_amd64.deb ... Unpacking python3-markupsafe (1.1.1-1build2) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../413-python3-jinja2_2.11.2-1_all.deb ... Unpacking python3-jinja2 (2.11.2-1) ... Selecting previously unselected package python3-lzstring. Preparing to unpack .../414-python3-lzstring_1.0.4-1.1_all.deb ... Unpacking python3-lzstring (1.0.4-1.1) ... Selecting previously unselected package python3-markdown. Preparing to unpack .../415-python3-markdown_3.3.4-1_all.deb ... Unpacking python3-markdown (3.3.4-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../416-python3-certifi_2020.6.20-1_all.deb ... Unpacking python3-certifi (2020.6.20-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../417-python3-chardet_4.0.0-1_all.deb ... Unpacking python3-chardet (4.0.0-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../418-python3-idna_2.10-1_all.deb ... Unpacking python3-idna (2.10-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../419-python3-urllib3_1.26.2-1ubuntu1_all.deb ... Unpacking python3-urllib3 (1.26.2-1ubuntu1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../420-python3-requests_2.25.1+dfsg-2_all.deb ... Unpacking python3-requests (2.25.1+dfsg-2) ... Selecting previously unselected package python3-simplejson. Preparing to unpack .../421-python3-simplejson_3.17.2-1_amd64.deb ... Unpacking python3-simplejson (3.17.2-1) ... Selecting previously unselected package python3-colormath. Preparing to unpack .../422-python3-colormath_3.0.0-1.1_all.deb ... Unpacking python3-colormath (3.0.0-1.1) ... Selecting previously unselected package python3-spectra. Preparing to unpack .../423-python3-spectra_0.0.11-2_all.deb ... Unpacking python3-spectra (0.0.11-2) ... Selecting previously unselected package multiqc. Preparing to unpack .../424-multiqc_1.9+dfsg-2_all.deb ... Unpacking multiqc (1.9+dfsg-2) ... Selecting previously unselected package nodejs. Preparing to unpack .../425-nodejs_12.21.0~dfsg-3ubuntu1_amd64.deb ... Unpacking nodejs (12.21.0~dfsg-3ubuntu1) ... Selecting previously unselected package node-highlight.js. Preparing to unpack .../426-node-highlight.js_9.18.5+dfsg1-1_all.deb ... Unpacking node-highlight.js (9.18.5+dfsg1-1) ... Selecting previously unselected package node-html5shiv. Preparing to unpack .../427-node-html5shiv_3.7.3+dfsg-3_all.deb ... Unpacking node-html5shiv (3.7.3+dfsg-3) ... Selecting previously unselected package pandoc-data. Preparing to unpack .../428-pandoc-data_2.9.2.1-1ubuntu3_all.deb ... Unpacking pandoc-data (2.9.2.1-1ubuntu3) ... Selecting previously unselected package pandoc. Preparing to unpack .../429-pandoc_2.9.2.1-1ubuntu3_amd64.deb ... Unpacking pandoc (2.9.2.1-1ubuntu3) ... Selecting previously unselected package picard-tools. Preparing to unpack .../430-picard-tools_2.24.1+dfsg-1_all.deb ... Unpacking picard-tools (2.24.1+dfsg-1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../431-python-babel-localedata_2.8.0+dfsg.1-6_all.deb ... Unpacking python-babel-localedata (2.8.0+dfsg.1-6) ... Selecting previously unselected package python3-all. Preparing to unpack .../432-python3-all_3.9.4-1_amd64.deb ... Unpacking python3-all (3.9.4-1) ... Selecting previously unselected package python3-argcomplete. Preparing to unpack .../433-python3-argcomplete_1.8.1-1.5_all.deb ... Unpacking python3-argcomplete (1.8.1-1.5) ... Selecting previously unselected package python3-attr. Preparing to unpack .../434-python3-attr_20.3.0-1_all.deb ... Unpacking python3-attr (20.3.0-1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../435-python3-babel_2.8.0+dfsg.1-6_all.deb ... Unpacking python3-babel (2.8.0+dfsg.1-6) ... Selecting previously unselected package python3-colorlog. Preparing to unpack .../436-python3-colorlog_4.7.2-1_all.deb ... Unpacking python3-colorlog (4.7.2-1) ... Selecting previously unselected package python3-commonmark. Preparing to unpack .../437-python3-commonmark_0.9.1-3_all.deb ... Unpacking python3-commonmark (0.9.1-3) ... Selecting previously unselected package python3-cyvcf2. Preparing to unpack .../438-python3-cyvcf2_0.30.4-4_amd64.deb ... Unpacking python3-cyvcf2 (0.30.4-4) ... Selecting previously unselected package python3-roman. Preparing to unpack .../439-python3-roman_2.0.0-5_all.deb ... Unpacking python3-roman (2.0.0-5) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../440-python3-docutils_0.16+dfsg-3_all.deb ... Unpacking python3-docutils (0.16+dfsg-3) ... Selecting previously unselected package python3-geneimpacts. Preparing to unpack .../441-python3-geneimpacts_0.3.7-3_all.deb ... Unpacking python3-geneimpacts (0.3.7-3) ... Selecting previously unselected package python3-argh. Preparing to unpack .../442-python3-argh_0.26.2-1.1_all.deb ... Unpacking python3-argh (0.26.2-1.1) ... Selecting previously unselected package python3-gffutils. Preparing to unpack .../443-python3-gffutils_0.10.1-2_all.deb ... Unpacking python3-gffutils (0.10.1-2) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../444-python3-imagesize_1.2.0-2_all.deb ... Unpacking python3-imagesize (1.2.0-2) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../445-python3-more-itertools_4.2.0-3_all.deb ... Unpacking python3-more-itertools (4.2.0-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../446-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../447-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../448-python3-iniconfig_1.1.1-1_all.deb ... Unpacking python3-iniconfig (1.1.1-1) ... Selecting previously unselected package python3-logbook. Preparing to unpack .../449-python3-logbook_1.5.3-4build1_amd64.deb ... Unpacking python3-logbook (1.5.3-4build1) ... Selecting previously unselected package python3-pybedtools. Preparing to unpack .../450-python3-pybedtools_0.8.0-5build2_amd64.deb ... Unpacking python3-pybedtools (0.8.0-5build2) ... Selecting previously unselected package python3-mirtop. Preparing to unpack .../451-python3-mirtop_0.4.23-1_all.deb ... Unpacking python3-mirtop (0.4.23-1) ... Selecting previously unselected package python3-nose. Preparing to unpack .../452-python3-nose_1.3.7-7_all.deb ... Unpacking python3-nose (1.3.7-7) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../453-python3-packaging_20.9-2_all.deb ... Unpacking python3-packaging (20.9-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../454-python3-setuptools_52.0.0-3_all.deb ... Unpacking python3-setuptools (52.0.0-3) ... Selecting previously unselected package python3-pbr. Preparing to unpack .../455-python3-pbr_5.5.1-0ubuntu1_all.deb ... Unpacking python3-pbr (5.5.1-0ubuntu1) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../456-python3-pluggy_0.13.0-6_all.deb ... Unpacking python3-pluggy (0.13.0-6) ... Selecting previously unselected package python3-ply. Preparing to unpack .../457-python3-ply_3.11-4_all.deb ... Unpacking python3-ply (3.11-4) ... Selecting previously unselected package python3-progressbar. Preparing to unpack .../458-python3-progressbar_2.5-2_all.deb ... Unpacking python3-progressbar (2.5-2) ... Selecting previously unselected package python3-psutil. Preparing to unpack .../459-python3-psutil_5.8.0-1_amd64.deb ... Unpacking python3-psutil (5.8.0-1) ... Selecting previously unselected package python3-py. Preparing to unpack .../460-python3-py_1.10.0-1_all.deb ... Unpacking python3-py (1.10.0-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../461-python3-pygments_2.7.1+dfsg-2ubuntu1_all.deb ... Unpacking python3-pygments (2.7.1+dfsg-2ubuntu1) ... Selecting previously unselected package python3-toml. Preparing to unpack .../462-python3-toml_0.10.1-1_all.deb ... Unpacking python3-toml (0.10.1-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../463-python3-pytest_6.0.2-2ubuntu1_all.deb ... Unpacking python3-pytest (6.0.2-2ubuntu1) ... Selecting previously unselected package python3-pytest-mock. Preparing to unpack .../464-python3-pytest-mock_1.10.4-4_all.deb ... Unpacking python3-pytest-mock (1.10.4-4) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../465-sphinx-common_3.5.3-1_all.deb ... Unpacking sphinx-common (3.5.3-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../466-python3-alabaster_0.7.8-1.1_all.deb ... Unpacking python3-alabaster (0.7.8-1.1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../467-python3-snowballstemmer_2.1.0-1_all.deb ... Unpacking python3-snowballstemmer (2.1.0-1) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../468-python3-sphinx_3.5.3-1_all.deb ... Unpacking python3-sphinx (3.5.3-1) ... Selecting previously unselected package python3-recommonmark. Preparing to unpack .../469-python3-recommonmark_0.6.0+ds-1_all.deb ... Unpacking python3-recommonmark (0.6.0+ds-1) ... Selecting previously unselected package python3-regex. Preparing to unpack .../470-python3-regex_0.1.20201113-1_amd64.deb ... Unpacking python3-regex (0.1.20201113-1) ... Selecting previously unselected package python3-seqcluster. Preparing to unpack .../471-python3-seqcluster_1.2.7+ds-1_all.deb ... Unpacking python3-seqcluster (1.2.7+ds-1) ... Selecting previously unselected package python3-toolz. Preparing to unpack .../472-python3-toolz_0.9.0-1.1_all.deb ... Unpacking python3-toolz (0.9.0-1.1) ... Selecting previously unselected package python3-tornado. Preparing to unpack .../473-python3-tornado_6.1.0-1build1_amd64.deb ... Unpacking python3-tornado (6.1.0-1build1) ... Selecting previously unselected package python3-vcf. Preparing to unpack .../474-python3-vcf_0.6.8+git20170215.476169c-7build2_amd64.deb ... Unpacking python3-vcf (0.6.8+git20170215.476169c-7build2) ... Selecting previously unselected package pythonpy. Preparing to unpack .../475-pythonpy_0.4.11b-3_all.deb ... Unpacking pythonpy (0.4.11b-3) ... Selecting previously unselected package r-bioc-biobase. Preparing to unpack .../476-r-bioc-biobase_2.50.0-1build1_amd64.deb ... Unpacking r-bioc-biobase (2.50.0-1build1) ... Selecting previously unselected package r-bioc-all. Preparing to unpack .../477-r-bioc-all_1.32.0-1_all.deb ... Unpacking r-bioc-all (1.32.0-1) ... Selecting previously unselected package r-bioc-s4vectors. Preparing to unpack .../478-r-bioc-s4vectors_0.28.1-1_amd64.deb ... Unpacking r-bioc-s4vectors (0.28.1-1) ... Selecting previously unselected package r-bioc-iranges. Preparing to unpack .../479-r-bioc-iranges_2.24.1-1_amd64.deb ... Unpacking r-bioc-iranges (2.24.1-1) ... Selecting previously unselected package r-cran-dbi. Preparing to unpack .../480-r-cran-dbi_1.1.1-1_all.deb ... Unpacking r-cran-dbi (1.1.1-1) ... Selecting previously unselected package r-cran-bit. Preparing to unpack .../481-r-cran-bit_4.0.4+dfsg-1_amd64.deb ... Unpacking r-cran-bit (4.0.4+dfsg-1) ... Selecting previously unselected package r-cran-bit64. Preparing to unpack .../482-r-cran-bit64_4.0.5-1_amd64.deb ... Unpacking r-cran-bit64 (4.0.5-1) ... Selecting previously unselected package r-cran-blob. Preparing to unpack .../483-r-cran-blob_1.2.1-2build1_all.deb ... Unpacking r-cran-blob (1.2.1-2build1) ... Selecting previously unselected package r-cran-fastmap. Preparing to unpack .../484-r-cran-fastmap_1.1.0-1_amd64.deb ... Unpacking r-cran-fastmap (1.1.0-1) ... Selecting previously unselected package r-cran-cachem. Preparing to unpack .../485-r-cran-cachem_1.0.3-1_amd64.deb ... Unpacking r-cran-cachem (1.0.3-1) ... Selecting previously unselected package r-cran-memoise. Preparing to unpack .../486-r-cran-memoise_2.0.0-1_all.deb ... Unpacking r-cran-memoise (2.0.0-1) ... Selecting previously unselected package r-cran-bh. Preparing to unpack .../487-r-cran-bh_1.74.0-1_all.deb ... Unpacking r-cran-bh (1.74.0-1) ... Selecting previously unselected package r-cran-plogr. Preparing to unpack .../488-r-cran-plogr_0.2.0-3build1_all.deb ... Unpacking r-cran-plogr (0.2.0-3build1) ... Selecting previously unselected package r-cran-rsqlite. Preparing to unpack .../489-r-cran-rsqlite_2.2.3-1_amd64.deb ... Unpacking r-cran-rsqlite (2.2.3-1) ... Selecting previously unselected package r-bioc-annotationdbi. Preparing to unpack .../490-r-bioc-annotationdbi_1.52.0-1_all.deb ... Unpacking r-bioc-annotationdbi (1.52.0-1) ... Selecting previously unselected package r-cran-xml. Preparing to unpack .../491-r-cran-xml_3.99-0.5-1_amd64.deb ... Unpacking r-cran-xml (3.99-0.5-1) ... Selecting previously unselected package r-cran-xtable. Preparing to unpack .../492-r-cran-xtable_1%3a1.8-4-2_all.deb ... Unpacking r-cran-xtable (1:1.8-4-2) ... Selecting previously unselected package r-cran-curl. Preparing to unpack .../493-r-cran-curl_4.3+dfsg-1build1_amd64.deb ... Unpacking r-cran-curl (4.3+dfsg-1build1) ... Selecting previously unselected package r-cran-mime. Preparing to unpack .../494-r-cran-mime_0.9-1build1_amd64.deb ... Unpacking r-cran-mime (0.9-1build1) ... Selecting previously unselected package r-cran-sys. Preparing to unpack .../495-r-cran-sys_3.4-1_amd64.deb ... Unpacking r-cran-sys (3.4-1) ... Selecting previously unselected package r-cran-askpass. Preparing to unpack .../496-r-cran-askpass_1.1-2_amd64.deb ... Unpacking r-cran-askpass (1.1-2) ... Selecting previously unselected package r-cran-openssl. Preparing to unpack .../497-r-cran-openssl_1.4.3+dfsg-2_amd64.deb ... Unpacking r-cran-openssl (1.4.3+dfsg-2) ... Selecting previously unselected package r-cran-httr. Preparing to unpack .../498-r-cran-httr_1.4.2-1_all.deb ... Unpacking r-cran-httr (1.4.2-1) ... Selecting previously unselected package r-bioc-annotate. Preparing to unpack .../499-r-bioc-annotate_1.68.0+dfsg-1_all.deb ... Unpacking r-bioc-annotate (1.68.0+dfsg-1) ... Selecting previously unselected package r-cran-generics. Preparing to unpack .../500-r-cran-generics_0.1.0-1_all.deb ... Unpacking r-cran-generics (0.1.0-1) ... Selecting previously unselected package r-cran-purrr. Preparing to unpack .../501-r-cran-purrr_0.3.4-1build1_amd64.deb ... Unpacking r-cran-purrr (0.3.4-1build1) ... Selecting previously unselected package r-cran-tidyselect. Preparing to unpack .../502-r-cran-tidyselect_1.1.0+dfsg-1build1_amd64.deb ... Unpacking r-cran-tidyselect (1.1.0+dfsg-1build1) ... Selecting previously unselected package r-cran-dplyr. Preparing to unpack .../503-r-cran-dplyr_1.0.4-1_amd64.deb ... Unpacking r-cran-dplyr (1.0.4-1) ... Selecting previously unselected package r-cran-dbplyr. Preparing to unpack .../504-r-cran-dbplyr_2.1.0-1_all.deb ... Unpacking r-cran-dbplyr (2.1.0-1) ... Selecting previously unselected package r-cran-rappdirs. Preparing to unpack .../505-r-cran-rappdirs_0.3.3-1_amd64.deb ... Unpacking r-cran-rappdirs (0.3.3-1) ... Selecting previously unselected package r-bioc-biocfilecache. Preparing to unpack .../506-r-bioc-biocfilecache_1.14.0+dfsg-1_all.deb ... Unpacking r-bioc-biocfilecache (1.14.0+dfsg-1) ... Selecting previously unselected package r-cran-formatr. Preparing to unpack .../507-r-cran-formatr_1.7-2build1_all.deb ... Unpacking r-cran-formatr (1.7-2build1) ... Selecting previously unselected package r-cran-lambda.r. Preparing to unpack .../508-r-cran-lambda.r_1.2.4-2build1_all.deb ... Unpacking r-cran-lambda.r (1.2.4-2build1) ... Selecting previously unselected package r-cran-futile.options. Preparing to unpack .../509-r-cran-futile.options_1.0.1-3build1_all.deb ... Unpacking r-cran-futile.options (1.0.1-3build1) ... Selecting previously unselected package r-cran-futile.logger. Preparing to unpack .../510-r-cran-futile.logger_1.4.3-4build1_all.deb ... Unpacking r-cran-futile.logger (1.4.3-4build1) ... Selecting previously unselected package r-cran-snow. Preparing to unpack .../511-r-cran-snow_1%3a0.4.3-2_all.deb ... Unpacking r-cran-snow (1:0.4.3-2) ... Selecting previously unselected package r-bioc-biocparallel. Preparing to unpack .../512-r-bioc-biocparallel_1.24.1-1_amd64.deb ... Unpacking r-bioc-biocparallel (1.24.1-1) ... Selecting previously unselected package r-cran-hms. Preparing to unpack .../513-r-cran-hms_1.0.0-1_all.deb ... Unpacking r-cran-hms (1.0.0-1) ... Selecting previously unselected package r-cran-progress. Preparing to unpack .../514-r-cran-progress_1.2.2-2build1_all.deb ... Unpacking r-cran-progress (1.2.2-2build1) ... Selecting previously unselected package r-cran-stringi. Preparing to unpack .../515-r-cran-stringi_1.5.3-1_amd64.deb ... Unpacking r-cran-stringi (1.5.3-1) ... Selecting previously unselected package r-cran-stringr. Preparing to unpack .../516-r-cran-stringr_1.4.0-2build1_all.deb ... Unpacking r-cran-stringr (1.4.0-2build1) ... Selecting previously unselected package r-cran-xml2. Preparing to unpack .../517-r-cran-xml2_1.3.2-1build1_amd64.deb ... Unpacking r-cran-xml2 (1.3.2-1build1) ... Selecting previously unselected package r-bioc-biomart. Preparing to unpack .../518-r-bioc-biomart_2.46.2+dfsg-1_all.deb ... Unpacking r-bioc-biomart (2.46.2+dfsg-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../519-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu6_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu6) ... Selecting previously unselected package r-bioc-zlibbioc. Preparing to unpack .../520-r-bioc-zlibbioc_1.36.0+dfsg-1_all.deb ... Unpacking r-bioc-zlibbioc (1.36.0+dfsg-1) ... Selecting previously unselected package r-bioc-xvector. Preparing to unpack .../521-r-bioc-xvector_0.30.0-1_amd64.deb ... Unpacking r-bioc-xvector (0.30.0-1) ... Selecting previously unselected package r-bioc-biostrings. Preparing to unpack .../522-r-bioc-biostrings_2.58.0-1_amd64.deb ... Unpacking r-bioc-biostrings (2.58.0-1) ... Selecting previously unselected package r-cran-bitops. Preparing to unpack .../523-r-cran-bitops_1.0-6-5_amd64.deb ... Unpacking r-cran-bitops (1.0-6-5) ... Selecting previously unselected package r-cran-rcurl. Preparing to unpack .../524-r-cran-rcurl_1.98-1.2-1build1_amd64.deb ... Unpacking r-cran-rcurl (1.98-1.2-1build1) ... Selecting previously unselected package r-bioc-genomeinfodbdata. Preparing to unpack .../525-r-bioc-genomeinfodbdata_1.2.4-1_all.deb ... Unpacking r-bioc-genomeinfodbdata (1.2.4-1) ... Selecting previously unselected package r-bioc-genomeinfodb. Preparing to unpack .../526-r-bioc-genomeinfodb_1.26.2-2_all.deb ... Unpacking r-bioc-genomeinfodb (1.26.2-2) ... Selecting previously unselected package r-bioc-genomicranges. Preparing to unpack .../527-r-bioc-genomicranges_1.42.0+dfsg-1_amd64.deb ... Unpacking r-bioc-genomicranges (1.42.0+dfsg-1) ... Selecting previously unselected package r-bioc-rhtslib. Preparing to unpack .../528-r-bioc-rhtslib_1.22.0+dfsg-1_amd64.deb ... Unpacking r-bioc-rhtslib (1.22.0+dfsg-1) ... Selecting previously unselected package r-bioc-rsamtools. Preparing to unpack .../529-r-bioc-rsamtools_2.6.0-1_amd64.deb ... Unpacking r-bioc-rsamtools (2.6.0-1) ... Selecting previously unselected package r-cran-matrixstats. Preparing to unpack .../530-r-cran-matrixstats_0.58.0-2_amd64.deb ... Unpacking r-cran-matrixstats (0.58.0-2) ... Selecting previously unselected package r-bioc-matrixgenerics. Preparing to unpack .../531-r-bioc-matrixgenerics_1.2.1-4_all.deb ... Unpacking r-bioc-matrixgenerics (1.2.1-4) ... Selecting previously unselected package r-bioc-delayedarray. Preparing to unpack .../532-r-bioc-delayedarray_0.16.1+dfsg-1_amd64.deb ... Unpacking r-bioc-delayedarray (0.16.1+dfsg-1) ... Selecting previously unselected package r-bioc-summarizedexperiment. Preparing to unpack .../533-r-bioc-summarizedexperiment_1.20.0+dfsg-1_all.deb ... Unpacking r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Selecting previously unselected package r-bioc-genomicalignments. Preparing to unpack .../534-r-bioc-genomicalignments_1.26.0-1_amd64.deb ... Unpacking r-bioc-genomicalignments (1.26.0-1) ... Selecting previously unselected package r-bioc-rtracklayer. Preparing to unpack .../535-r-bioc-rtracklayer_1.50.0-1_amd64.deb ... Unpacking r-bioc-rtracklayer (1.50.0-1) ... Selecting previously unselected package r-bioc-bsgenome. Preparing to unpack .../536-r-bioc-bsgenome_1.58.0-1_all.deb ... Unpacking r-bioc-bsgenome (1.58.0-1) ... Selecting previously unselected package r-cran-globaloptions. Preparing to unpack .../537-r-cran-globaloptions_0.1.2-1_all.deb ... Unpacking r-cran-globaloptions (0.1.2-1) ... Selecting previously unselected package r-cran-shape. Preparing to unpack .../538-r-cran-shape_1.4.5-1_all.deb ... Unpacking r-cran-shape (1.4.5-1) ... Selecting previously unselected package r-cran-circlize. Preparing to unpack .../539-r-cran-circlize_0.4.12-1_all.deb ... Unpacking r-cran-circlize (0.4.12-1) ... Selecting previously unselected package r-cran-rjson. Preparing to unpack .../540-r-cran-rjson_0.2.20-2_amd64.deb ... Unpacking r-cran-rjson (0.2.20-2) ... Selecting previously unselected package r-cran-getoptlong. Preparing to unpack .../541-r-cran-getoptlong_1.0.5+dfsg-1_all.deb ... Unpacking r-cran-getoptlong (1.0.5+dfsg-1) ... Selecting previously unselected package r-cran-cluster. Preparing to unpack .../542-r-cran-cluster_2.1.1-1build1_amd64.deb ... Unpacking r-cran-cluster (2.1.1-1build1) ... Selecting previously unselected package r-cran-clue. Preparing to unpack .../543-r-cran-clue_0.3-58-1_amd64.deb ... Unpacking r-cran-clue (0.3-58-1) ... Selecting previously unselected package r-cran-png. Preparing to unpack .../544-r-cran-png_0.1-7-4_amd64.deb ... Unpacking r-cran-png (0.1-7-4) ... Selecting previously unselected package r-cran-cairo. Preparing to unpack .../545-r-cran-cairo_1.5-12.2-1_amd64.deb ... Unpacking r-cran-cairo (1.5-12.2-1) ... Selecting previously unselected package r-bioc-complexheatmap. Preparing to unpack .../546-r-bioc-complexheatmap_2.6.2+dfsg-1_all.deb ... Unpacking r-bioc-complexheatmap (2.6.2+dfsg-1) ... Selecting previously unselected package r-bioc-consensusclusterplus. Preparing to unpack .../547-r-bioc-consensusclusterplus_1.54.0-1_all.deb ... Unpacking r-bioc-consensusclusterplus (1.54.0-1) ... Selecting previously unselected package r-cran-backports. Preparing to unpack .../548-r-cran-backports_1.2.1-1_amd64.deb ... Unpacking r-cran-backports (1.2.1-1) ... Selecting previously unselected package r-cran-cpp11. Preparing to unpack .../549-r-cran-cpp11_0.2.6-1_all.deb ... Unpacking r-cran-cpp11 (0.2.6-1) ... Selecting previously unselected package r-cran-tidyr. Preparing to unpack .../550-r-cran-tidyr_1.1.2-1_amd64.deb ... Unpacking r-cran-tidyr (1.1.2-1) ... Selecting previously unselected package r-cran-broom. Preparing to unpack .../551-r-cran-broom_0.7.4+dfsg-1_all.deb ... Unpacking r-cran-broom (0.7.4+dfsg-1) ... Selecting previously unselected package r-cran-cowplot. Preparing to unpack .../552-r-cran-cowplot_1.1.1+dfsg-1_all.deb ... Unpacking r-cran-cowplot (1.1.1+dfsg-1) ... Selecting previously unselected package r-cran-survival. Preparing to unpack .../553-r-cran-survival_3.2-7-1_amd64.deb ... Unpacking r-cran-survival (3.2-7-1) ... Selecting previously unselected package r-bioc-genefilter. Preparing to unpack .../554-r-bioc-genefilter_1.72.1-1_amd64.deb ... Unpacking r-bioc-genefilter (1.72.1-1) ... Selecting previously unselected package r-cran-locfit. Preparing to unpack .../555-r-cran-locfit_1.5-9.4-2build1_amd64.deb ... Unpacking r-cran-locfit (1.5-9.4-2build1) ... Selecting previously unselected package r-bioc-geneplotter. Preparing to unpack .../556-r-bioc-geneplotter_1.68.0-1_all.deb ... Unpacking r-bioc-geneplotter (1.68.0-1) ... Selecting previously unselected package r-cran-rcpparmadillo. Preparing to unpack .../557-r-cran-rcpparmadillo_0.10.2.1.0-1build1_amd64.deb ... Unpacking r-cran-rcpparmadillo (0.10.2.1.0-1build1) ... Selecting previously unselected package r-bioc-deseq2. Preparing to unpack .../558-r-bioc-deseq2_1.30.1+dfsg-1_amd64.deb ... Unpacking r-bioc-deseq2 (1.30.1+dfsg-1) ... Selecting previously unselected package r-bioc-limma. Preparing to unpack .../559-r-bioc-limma_3.46.0+dfsg-1_amd64.deb ... Unpacking r-bioc-limma (3.46.0+dfsg-1) ... Selecting previously unselected package r-bioc-edger. Preparing to unpack .../560-r-bioc-edger_3.32.1+dfsg-1_amd64.deb ... Unpacking r-bioc-edger (3.32.1+dfsg-1) ... Selecting previously unselected package r-cran-ggdendro. Preparing to unpack .../561-r-cran-ggdendro_0.1.22+dfsg-1_all.deb ... Unpacking r-cran-ggdendro (0.1.22+dfsg-1) ... Selecting previously unselected package r-cran-ggrepel. Preparing to unpack .../562-r-cran-ggrepel_0.9.1-1_amd64.deb ... Unpacking r-cran-ggrepel (0.9.1-1) ... Selecting previously unselected package r-cran-highr. Preparing to unpack .../563-r-cran-highr_0.8+dfsg-2build1_all.deb ... Unpacking r-cran-highr (0.8+dfsg-2build1) ... Selecting previously unselected package r-cran-xfun. Preparing to unpack .../564-r-cran-xfun_0.20-1_amd64.deb ... Unpacking r-cran-xfun (0.20-1) ... Selecting previously unselected package r-cran-markdown. Preparing to unpack .../565-r-cran-markdown_1.1+dfsg-1build1_amd64.deb ... Unpacking r-cran-markdown (1.1+dfsg-1build1) ... Selecting previously unselected package r-cran-yaml. Preparing to unpack .../566-r-cran-yaml_2.2.1-1build1_amd64.deb ... Unpacking r-cran-yaml (2.2.1-1build1) ... Selecting previously unselected package libjs-mathjax. Preparing to unpack .../567-libjs-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking libjs-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package r-cran-knitr. Preparing to unpack .../568-r-cran-knitr_1.31+dfsg-1_all.deb ... Unpacking r-cran-knitr (1.31+dfsg-1) ... Selecting previously unselected package r-cran-logging. Preparing to unpack .../569-r-cran-logging_0.10-108-2build1_all.deb ... Unpacking r-cran-logging (0.10-108-2build1) ... Selecting previously unselected package r-cran-lasso2. Preparing to unpack .../570-r-cran-lasso2_1.2-21.1-1_amd64.deb ... Unpacking r-cran-lasso2 (1.2-21.1-1) ... Selecting previously unselected package r-cran-nozzle.r1. Preparing to unpack .../571-r-cran-nozzle.r1_1.1-1+dfsg-4build1_all.deb ... Unpacking r-cran-nozzle.r1 (1.1-1+dfsg-4build1) ... Selecting previously unselected package r-cran-tmvnsim. Preparing to unpack .../572-r-cran-tmvnsim_1.0-2-1_amd64.deb ... Unpacking r-cran-tmvnsim (1.0-2-1) ... Selecting previously unselected package r-cran-mnormt. Preparing to unpack .../573-r-cran-mnormt_2.0.2-1_amd64.deb ... Unpacking r-cran-mnormt (2.0.2-1) ... Selecting previously unselected package r-cran-psych. Preparing to unpack .../574-r-cran-psych_2.0.12-1_all.deb ... Unpacking r-cran-psych (2.0.12-1) ... Selecting previously unselected package r-cran-reshape. Preparing to unpack .../575-r-cran-reshape_0.8.8-2build1_all.deb ... Unpacking r-cran-reshape (0.8.8-2build1) ... Selecting previously unselected package r-bioc-degreport. Preparing to unpack .../576-r-bioc-degreport_1.26.0+dfsg-1_all.deb ... Unpacking r-bioc-degreport (1.26.0+dfsg-1) ... Selecting previously unselected package r-bioc-genomicfeatures. Preparing to unpack .../577-r-bioc-genomicfeatures_1.42.1+dfsg-1_all.deb ... Unpacking r-bioc-genomicfeatures (1.42.1+dfsg-1) ... Selecting previously unselected package r-bioc-htsfilter. Preparing to unpack .../578-r-bioc-htsfilter_1.30.1+dfsg-1_all.deb ... Unpacking r-bioc-htsfilter (1.30.1+dfsg-1) ... Selecting previously unselected package r-bioc-variantannotation. Preparing to unpack .../579-r-bioc-variantannotation_1.36.0-1_amd64.deb ... Unpacking r-bioc-variantannotation (1.36.0-1) ... Selecting previously unselected package r-cran-data.table. Preparing to unpack .../580-r-cran-data.table_1.13.6+dfsg-1_amd64.deb ... Unpacking r-cran-data.table (1.13.6+dfsg-1) ... Selecting previously unselected package r-cran-gridextra. Preparing to unpack .../581-r-cran-gridextra_2.3-3build1_all.deb ... Unpacking r-cran-gridextra (2.3-3build1) ... Selecting previously unselected package r-cran-vgam. Preparing to unpack .../582-r-cran-vgam_1.1-5-1_amd64.deb ... Unpacking r-cran-vgam (1.1-5-1) ... Selecting previously unselected package r-bioc-rhdf5lib. Preparing to unpack .../583-r-bioc-rhdf5lib_1.12.1+dfsg-2_amd64.deb ... Unpacking r-bioc-rhdf5lib (1.12.1+dfsg-2) ... Selecting previously unselected package r-bioc-rhdf5filters. Preparing to unpack .../584-r-bioc-rhdf5filters_1.2.0+dfsg2-1_amd64.deb ... Unpacking r-bioc-rhdf5filters (1.2.0+dfsg2-1) ... Selecting previously unselected package r-bioc-rhdf5. Preparing to unpack .../585-r-bioc-rhdf5_2.34.0+dfsg-1_amd64.deb ... Unpacking r-bioc-rhdf5 (2.34.0+dfsg-1) ... Selecting previously unselected package r-bioc-purecn. Preparing to unpack .../586-r-bioc-purecn_1.20.0+dfsg-3_all.deb ... Unpacking r-bioc-purecn (1.20.0+dfsg-3) ... Selecting previously unselected package r-cran-codetools. Preparing to unpack .../587-r-cran-codetools_0.2-18-1_all.deb ... Unpacking r-cran-codetools (0.2-18-1) ... Selecting previously unselected package r-cran-iterators. Preparing to unpack .../588-r-cran-iterators_1.0.13-1_all.deb ... Unpacking r-cran-iterators (1.0.13-1) ... Selecting previously unselected package r-cran-foreach. Preparing to unpack .../589-r-cran-foreach_1.5.1-1_all.deb ... Unpacking r-cran-foreach (1.5.1-1) ... Selecting previously unselected package r-bioc-titancna. Preparing to unpack .../590-r-bioc-titancna_1.28.0-2_amd64.deb ... Unpacking r-bioc-titancna (1.28.0-2) ... Selecting previously unselected package r-bioc-tximport. Preparing to unpack .../591-r-bioc-tximport_1.18.0+dfsg-1_all.deb ... Unpacking r-bioc-tximport (1.18.0+dfsg-1) ... Selecting previously unselected package r-cran-base64enc. Preparing to unpack .../592-r-cran-base64enc_0.1-3-3_amd64.deb ... Unpacking r-cran-base64enc (0.1-3-3) ... Selecting previously unselected package r-cran-rematch. Preparing to unpack .../593-r-cran-rematch_1.0.1-3_all.deb ... Unpacking r-cran-rematch (1.0.1-3) ... Selecting previously unselected package r-cran-cellranger. Preparing to unpack .../594-r-cran-cellranger_1.1.0-3_all.deb ... Unpacking r-cran-cellranger (1.1.0-3) ... Selecting previously unselected package r-cran-clipr. Preparing to unpack .../595-r-cran-clipr_0.7.1-1_all.deb ... Unpacking r-cran-clipr (0.7.1-1) ... Selecting previously unselected package r-cran-commonmark. Preparing to unpack .../596-r-cran-commonmark_1.7-2_amd64.deb ... Unpacking r-cran-commonmark (1.7-2) ... Selecting previously unselected package r-cran-forcats. Preparing to unpack .../597-r-cran-forcats_0.5.1-1_all.deb ... Unpacking r-cran-forcats (0.5.1-1) ... Selecting previously unselected package r-cran-fs. Preparing to unpack .../598-r-cran-fs_1.5.0+dfsg-1_amd64.deb ... Unpacking r-cran-fs (1.5.0+dfsg-1) ... Selecting previously unselected package r-cran-readr. Preparing to unpack .../599-r-cran-readr_1.4.0-1_amd64.deb ... Unpacking r-cran-readr (1.4.0-1) ... Selecting previously unselected package r-cran-haven. Preparing to unpack .../600-r-cran-haven_2.3.1-1_amd64.deb ... Unpacking r-cran-haven (2.3.1-1) ... Selecting previously unselected package r-cran-htmltools. Preparing to unpack .../601-r-cran-htmltools_0.5.1.1-1_amd64.deb ... Unpacking r-cran-htmltools (0.5.1.1-1) ... Selecting previously unselected package r-cran-later. Preparing to unpack .../602-r-cran-later_1.1.0.1+dfsg-1_amd64.deb ... Unpacking r-cran-later (1.1.0.1+dfsg-1) ... Selecting previously unselected package r-cran-promises. Preparing to unpack .../603-r-cran-promises_1.1.1+dfsg-1_amd64.deb ... Unpacking r-cran-promises (1.1.1+dfsg-1) ... Selecting previously unselected package r-cran-httpuv. Preparing to unpack .../604-r-cran-httpuv_1.5.5+dfsg-1_amd64.deb ... Unpacking r-cran-httpuv (1.5.5+dfsg-1) ... Selecting previously unselected package r-cran-lubridate. Preparing to unpack .../605-r-cran-lubridate_1.7.9.2+dfsg-1_amd64.deb ... Unpacking r-cran-lubridate (1.7.9.2+dfsg-1) ... Selecting previously unselected package r-cran-modelr. Preparing to unpack .../606-r-cran-modelr_0.1.8-1build1_all.deb ... Unpacking r-cran-modelr (0.1.8-1build1) ... Selecting previously unselected package r-cran-readxl. Preparing to unpack .../607-r-cran-readxl_1.3.1-2build2_amd64.deb ... Unpacking r-cran-readxl (1.3.1-2build2) ... Selecting previously unselected package r-cran-tinytex. Preparing to unpack .../608-r-cran-tinytex_0.29-1_all.deb ... Unpacking r-cran-tinytex (0.29-1) ... Selecting previously unselected package libjs-modernizr. Preparing to unpack .../609-libjs-modernizr_2.6.2+ds1-4_all.deb ... Unpacking libjs-modernizr (2.6.2+ds1-4) ... Selecting previously unselected package r-cran-sourcetools. Preparing to unpack .../610-r-cran-sourcetools_0.1.7-3_amd64.deb ... Unpacking r-cran-sourcetools (0.1.7-3) ... Selecting previously unselected package libjs-twitter-bootstrap-datepicker. Preparing to unpack .../611-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Selecting previously unselected package r-cran-shiny. Preparing to unpack .../612-r-cran-shiny_1.5.0+dfsg-1_all.deb ... Unpacking r-cran-shiny (1.5.0+dfsg-1) ... Selecting previously unselected package r-cran-rmarkdown. Preparing to unpack .../613-r-cran-rmarkdown_2.6+dfsg-1_all.deb ... Unpacking r-cran-rmarkdown (2.6+dfsg-1) ... Selecting previously unselected package r-cran-reprex. Preparing to unpack .../614-r-cran-reprex_1.0.0-1_all.deb ... Unpacking r-cran-reprex (1.0.0-1) ... Selecting previously unselected package r-cran-selectr. Preparing to unpack .../615-r-cran-selectr_0.4-2-2build1_all.deb ... Unpacking r-cran-selectr (0.4-2-2build1) ... Selecting previously unselected package r-cran-rvest. Preparing to unpack .../616-r-cran-rvest_0.3.6-1_all.deb ... Unpacking r-cran-rvest (0.3.6-1) ... Selecting previously unselected package r-cran-tidyverse. Preparing to unpack .../617-r-cran-tidyverse_1.3.0-2build1_all.deb ... Unpacking r-cran-tidyverse (1.3.0-2build1) ... Selecting previously unselected package r-other-wasabi. Preparing to unpack .../618-r-other-wasabi_1.0.1-2build1_all.deb ... Unpacking r-other-wasabi (1.0.1-2build1) ... Selecting previously unselected package rapmap. Preparing to unpack .../619-rapmap_0.15.0+dfsg-1build1_amd64.deb ... Unpacking rapmap (0.15.0+dfsg-1build1) ... Selecting previously unselected package rna-star. Preparing to unpack .../620-rna-star_2.7.8a+dfsg-2_amd64.deb ... Unpacking rna-star (2.7.8a+dfsg-2) ... Selecting previously unselected package libtbb2:amd64. Preparing to unpack .../621-libtbb2_2020.3-1_amd64.deb ... Unpacking libtbb2:amd64 (2020.3-1) ... Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../622-sphinx-rtd-theme-common_0.5.1+dfsg-1_all.deb ... Unpacking sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Selecting previously unselected package salmon. Preparing to unpack .../623-salmon_1.4.0+ds1-1build1_amd64.deb ... Unpacking salmon (1.4.0+ds1-1build1) ... Selecting previously unselected package seqtk. Preparing to unpack .../624-seqtk_1.3-2_amd64.deb ... Unpacking seqtk (1.3-2) ... Selecting previously unselected package subread. Preparing to unpack .../625-subread_2.0.1+dfsg-1_amd64.deb ... Unpacking subread (2.0.1+dfsg-1) ... Selecting previously unselected package tophat-recondition. Preparing to unpack .../626-tophat-recondition_1.4-3_all.deb ... Unpacking tophat-recondition (1.4-3) ... Selecting previously unselected package umis. Preparing to unpack .../627-umis_1.0.7-1build1_amd64.deb ... Unpacking umis (1.0.7-1build1) ... Selecting previously unselected package vcfanno. Preparing to unpack .../628-vcfanno_0.3.2+ds-2_amd64.deb ... Unpacking vcfanno (0.3.2+ds-2) ... Selecting previously unselected package vt. Preparing to unpack .../629-vt_0.57721+ds-3_amd64.deb ... Unpacking vt (0.57721+ds-3) ... Selecting previously unselected package wham-align. Preparing to unpack .../630-wham-align_0.1.5-8_amd64.deb ... Unpacking wham-align (0.1.5-8) ... Selecting previously unselected package xonsh. Preparing to unpack .../631-xonsh_0.9.25+dfsg-1_all.deb ... Unpacking xonsh (0.9.25+dfsg-1) ... Selecting previously unselected package bowtie2. Preparing to unpack .../632-bowtie2_2.4.2-2_amd64.deb ... Unpacking bowtie2 (2.4.2-2) ... Selecting previously unselected package python3-mock. Preparing to unpack .../633-python3-mock_4.0.3-1_all.deb ... Unpacking python3-mock (4.0.3-1) ... Selecting previously unselected package seqan-apps. Preparing to unpack .../634-seqan-apps_2.4.0+dfsg-14ubuntu1_amd64.deb ... Unpacking seqan-apps (2.4.0+dfsg-14ubuntu1) ... Selecting previously unselected package sbuild-build-depends-bcbio-dummy. Preparing to unpack .../635-sbuild-build-depends-bcbio-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-bcbio-dummy (0.invalid.0) ... Setting up libhtscodecs2:amd64 (0.5-3) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libjs-json (0~20190826+~1.0.5-2) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.12~rc1-2) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-2) ... Setting up libpixman-1-0:amd64 (0.40.0-1build2) ... Setting up libdtd-parser-java (1.2-1) ... Setting up libgclib2:amd64 (0.11.10+ds-2) ... Setting up libpciaccess0:amd64 (0.16-1build2) ... Setting up libslf4j-java (1.7.30-1) ... Setting up libxau6:amd64 (1:1.0.9-1build3) ... Setting up libplexus-utils2-java (3.3.0-1) ... Setting up gffread (0.12.1-4) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libplexus-classworlds-java (2.6.0-1) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up libboost1.74-dev:amd64 (1.74.0-8ubuntu2) ... Setting up fonts-lato (2.0-2.1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up seqtk (1.3-2) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up bsdextrautils (2.36.1-7ubuntu2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libgatk-native-bindings-java (1.0.0-2.1) ... Setting up java-common (0.72) ... Setting up libicu67:amd64 (67.1-6ubuntu2) ... Setting up libdatrie1:amd64 (0.2.13-1ubuntu2) ... Setting up libaopalliance-java (20070526-6) ... Setting up libcommons-cli-java (1.4-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up samblaster (0.1.26-1) ... Setting up mosdepth (0.3.1+ds-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libgkl-java (0.8.7+dfsg-1) ... Setting up libglib2.0-0:amd64 (2.68.0-1) ... No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-1) ... Setting up libboost-iostreams1.74.0:amd64 (1.74.0-8ubuntu2) ... Setting up libglvnd0:amd64 (1.3.2-1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-2) ... Setting up libgoogle-gson-java (2.8.6-1) ... Setting up libboost-program-options1.74.0:amd64 (1.74.0-8ubuntu2) ... Setting up fonts-lyx (2.3.6-1) ... Setting up unzip (6.0-26ubuntu1) ... Setting up libdebhelper-perl (13.3.4ubuntu1) ... Setting up libbrotli1:amd64 (1.0.9-2build2) ... Setting up libtbb2:amd64 (2020.3-1) ... Setting up x11-common (1:7.7+22ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.6.0-7) ... Setting up libsmithwaterman0 (0.0+git20160702.2610e25-11) ... Setting up node-html5shiv (3.7.3+dfsg-3) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libngs-sdk2:amd64 (2.10.9-1) ... Setting up libdeflate0:amd64 (1.7-1ubuntu1) ... Setting up gettext-base (0.21-3ubuntu2) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-8ubuntu2) ... Setting up libplexus-component-annotations-java (2.1.0-1) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up libfindbin-libs-perl (2.190.02-1) ... Setting up libc-ares2:amd64 (1.17.1-1) ... Setting up file (1:5.39-3) ... Setting up libjemalloc2:amd64 (5.2.1-2) ... Setting up libjs-modernizr (2.6.2+ds1-4) ... Setting up libgpgme11:amd64 (1.14.0-1ubuntu3) ... Setting up libfml0:amd64 (0.1+git20190320.b499514-1) ... Setting up libfastahack0 (1.0.0+dfsg-7) ... Setting up libjbig0:amd64 (2.1-3.1build1) ... Setting up gsort (0.1.4-3) ... Setting up libnode72:amd64 (12.21.0~dfsg-3ubuntu1) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up python-babel-localedata (2.8.0+dfsg.1-6) ... Setting up libplexus-cipher-java (1.8-2) ... Setting up libsnappy1v5:amd64 (1.1.8-1build1) ... Setting up libjs-es5-shim (4.5.15-1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2ubuntu1) ... Setting up wham-align (0.1.5-8) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4fakesync) ... Setting up libasound2-data (1.2.4-1.1ubuntu2) ... Setting up libsis-base-jni (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Setting up zip (3.0-12) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.40.0-1) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1build1) ... Setting up libx11-data (2:1.7.0-2build2) ... Setting up libnspr4:amd64 (2:4.29-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build2) ... Setting up libapache-pom-java (18-1) ... Setting up libavahi-common-data:amd64 (0.8-5ubuntu2) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:amd64 (1.12.20-1ubuntu3) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu1) ... Setting up libfribidi0:amd64 (1.0.8-2ubuntu1) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up seqan-apps (2.4.0+dfsg-14ubuntu1) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libbamtools2.5.1:amd64 (2.5.1+dfsg-8) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libxz-java (1.8-2) ... Setting up libtcl8.6:amd64 (8.6.11+dfsg-1) ... Setting up autopoint (0.21-3ubuntu2) ... Setting up libwebp6:amd64 (0.6.1-2) ... Setting up libjbzip2-java (0.9.1-5) ... Setting up libngs-sdk-dev:amd64 (2.10.9-1) ... Setting up libpcsclite1:amd64 (1.9.1-1) ... Setting up ucf (3.0043) ... Setting up libsensors5:amd64 (1:3.6.0-7) ... Setting up libcmark-gfm0:amd64 (0.29.0.gfm.0-6) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libjpeg-turbo8:amd64 (2.0.6-0ubuntu2) ... Setting up libactivation-java (1.2.0-2) ... Setting up libglapi-mesa:amd64 (21.0.1-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2ubuntu1) ... Setting up libssh-4:amd64 (0.9.5-1) ... Setting up libgfortran5:amd64 (11-20210404-1ubuntu1) ... Setting up libvulkan1:amd64 (1.2.162.0-1) ... Setting up libroken18-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libgzstream0 (1.5+dfsg-5) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up libgif7:amd64 (5.1.9-2) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2ubuntu6) ... Setting up libmd0:amd64 (1.0.3-3build1) ... Setting up libjs-highlight.js (9.18.5+dfsg1-1) ... Setting up libfreemarker-java (2.3.23-11) ... Setting up libxshmfence1:amd64 (1.3-1build2) ... Setting up libjsoup-java (1.10.2-2) ... Setting up subread (2.0.1+dfsg-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libasound2:amd64 (1.2.4-1.1ubuntu2) ... Setting up libblosc1 (1.20.1+ds1-2) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libsub-override-perl (0.09-2) ... Setting up libplexus-sec-dispatcher-java (1.4-4) ... Setting up libharfbuzz0b:amd64 (2.7.4-1ubuntu1) ... Setting up libthai-data (0.1.28-4) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up sgml-base (1.30) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up nim (1.4.2-1) ... Setting up libboost-dev:amd64 (1.74.0.3ubuntu5) ... Setting up libhttpcore-java (4.4.14-1) ... Setting up pandoc-data (2.9.2.1-1ubuntu3) ... Setting up libjoptsimple-java (5.0.4-4) ... Setting up vcfanno (0.3.2+ds-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libngs-java:amd64 (2.10.9-1) ... Setting up librelaxng-datatype-java (1.0+ds1-3.1) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:amd64 (0.6.1-2) ... Setting up libbsd0:amd64 (0.11.3-1ubuntu2) ... Setting up node-normalize.css (8.0.1-3) ... Setting up tabix (1.11-4) ... Setting up libdrm-common (2.4.104-1build1) ... Setting up mailcap (3.68ubuntu1) ... Setting up libcdi-api-java (1.2-3) ... Setting up libelf1:amd64 (0.183-6) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up libssw0:amd64 (1.1-13) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3build2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up xdg-utils (1.1.3-2ubuntu2) ... Setting up bedtools (2.30.0+dfsg-1) ... Setting up libargs4j-java (2.33-1.1) ... Setting up libsz2:amd64 (1.0.4-1) ... Setting up libjs-bootstrap (3.4.1+dfsg-2) ... Setting up libpython3.9-stdlib:amd64 (3.9.4-1) ... Setting up libpython3-stdlib:amd64 (3.9.4-1) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libdom4j-java (2.1.3-1) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up r-cran-bh (1.74.0-1) ... Setting up libwagon-provider-api-java (3.3.4-1) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libdw1:amd64 (0.183-6) ... Setting up libxdmcp6:amd64 (1:1.1.3-0ubuntu3) ... Setting up liblapack3:amd64 (3.9.0-3ubuntu2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3ubuntu1) ... Setting up gettext (0.21-3ubuntu2) ... Setting up libxcb-xfixes0:amd64 (1.14-3ubuntu1) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:amd64 (1.14-3ubuntu1) ... Setting up fontconfig-config (2.13.1-4.2ubuntu3) ... Setting up libmaus2-2 (2.0.768+dfsg-1) ... Setting up libstax-ex-java (1.7.8-3) ... Setting up libxcb-glx0:amd64 (1.14-3ubuntu1) ... Setting up libwebpdemux2:amd64 (0.6.1-2) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libmaven-parent-java (31-2) ... Setting up libedit2:amd64 (3.1-20191231-2) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:amd64 (0.8-5ubuntu2) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-5) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:amd64 (2:3.63-1ubuntu1) ... Setting up libxcb-shm0:amd64 (1.14-3ubuntu1) ... Setting up libpaper-utils (1.1.28) ... Setting up nodejs (12.21.0~dfsg-3ubuntu1) ... update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libcmark-gfm-extensions0:amd64 (0.29.0.gfm.0-6) ... Setting up biobambam2 (2.0.179+ds-1) ... Setting up libjs-jquery-datatables (1.10.21+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:amd64 (1.14-3ubuntu1) ... Setting up libcommons-jexl2-java (2.1.1-5) ... Setting up libthai0:amd64 (0.1.28-4) ... Setting up libsisu-plexus-java (0.3.4-3) ... Setting up nim-hts-dev (0.3.14+ds-1) ... Setting up libmaven-resolver-java (1.4.2-3build1) ... Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up libllvm11:amd64 (1:11.0.1-2ubuntu2) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up pandoc (2.9.2.1-1ubuntu3) ... Setting up libguava-java (29.0-6) ... Setting up libxcb-sync1:amd64 (1.14-3ubuntu1) ... Setting up libjs-jquery-metadata (12-3) ... Setting up libstreambuffer-java (1.5.4-1.1) ... Setting up libjs-sphinxdoc (3.5.3-1) ... Setting up libcommons-lang3-java (3.11-1) ... Setting up autoconf (2.69-14) ... Setting up libxcb-dri2-0:amd64 (1.14-3ubuntu1) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up librngom-java (2.3.0.1-10) ... Setting up libdrm2:amd64 (2.4.104-1build1) ... Setting up libhdf5-103-1:amd64 (1.10.6+repack-2) ... Setting up dwz (0.14-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-1) ... Setting up groff-base (1.22.4-6) ... Setting up rapmap (0.15.0+dfsg-1build1) ... Setting up xml-core (0.18+nmu1) ... Setting up debugedit (1:0.1-0ubuntu2) ... Setting up libx11-6:amd64 (2:1.7.0-2build2) ... Setting up libsis-jhdf5-jni (19.04.0+dfsg-4) ... Setting up grabix (0.1.7-2build1) ... Setting up libtiff5:amd64 (4.2.0-1build1) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-4.2ubuntu3) ... Setting up libxsom-java (2.3.0.1-10) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.8-5ubuntu2) ... Setting up python3.9 (3.9.4-1) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.3-9) ... Setting up libdrm-amdgpu1:amd64 (2.4.104-1build1) ... Setting up automake (1:1.16.3-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.14-3ubuntu1) ... Setting up node-highlight.js (9.18.5+dfsg1-1) ... Setting up libx11-xcb1:amd64 (2:1.7.0-2build2) ... Setting up fontconfig (2.13.1-4.2ubuntu3) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:amd64 (2.4.104-1build1) ... Setting up libxrender1:amd64 (1:0.9.10-1build2) ... Setting up libcommons-compress-java (1.20-1) ... Setting up hts-nim-tools (0.2.1-1) ... Setting up libcommons-io-java (2.8.0-1) ... Setting up libdrm-radeon1:amd64 (2.4.104-1build1) ... Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:amd64 (1.48.2-1build2) ... Setting up libdrm-intel1:amd64 (2.4.104-1build1) ... Setting up libgl1-mesa-dri:amd64 (21.0.1-2) ... Setting up libxext6:amd64 (2:1.3.4-0ubuntu3) ... Setting up python3 (3.9.4-1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-markupsafe (1.1.1-1build2) ... Setting up libguice-java (4.2.3-2) ... Setting up libcairo2:amd64 (1.16.0-5ubuntu1) ... Setting up bamkit (0.0.1+git20170413.ccd079d-2) ... Setting up python3-psutil (5.8.0-1) ... Setting up python3-tz (2021.1-1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1build1) ... Setting up bowtie2 (2.4.2-2) ... Setting up python3-six (1.15.0-2) ... Setting up python3-simplejson (3.17.2-1) ... Setting up dh-autoreconf (20) ... Setting up python3-progressbar (2.5-2) ... Setting up python3-pil:amd64 (8.1.2-1) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-jinja2 (2.11.2-1) ... Setting up tophat-recondition (1.4-3) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-humanfriendly (9.1-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up libxfixes3:amd64 (1:5.0.3-2build1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up sphinx-common (3.5.3-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-reportlab-accel:amd64 (3.5.66-1) ... Setting up python3-kiwisolver (1.3.1-1build1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-1ubuntu3) ... Setting up libxt6:amd64 (1:1.2.0-1) ... Setting up python3-regex (0.1.20201113-1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-urllib3 (1.26.2-1ubuntu1) ... Setting up python3-reportlab (3.5.66-1) ... Setting up libcups2:amd64 (2.3.3op2-3ubuntu3) ... Setting up libsis-base-java (18.09~pre1+git20180928.45fbd31+dfsg-3) ... Setting up hisat2 (2.2.1-2) ... Setting up libhttpclient-java (4.5.13-1) ... Setting up python3-toolz (0.9.0-1.1) ... Setting up python3-dateutil (2.8.1-5) ... Setting up liblightcouch-java (0.0.6-1.1) ... Setting up libwagon-http-java (3.3.4-1) ... Setting up libmaven-shared-utils-java (3.3.0-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfastinfoset-java (1.2.12-3) ... Setting up libpangoft2-1.0-0:amd64 (1.48.2-1build2) ... Setting up python3-argcomplete (1.8.1-1.5) ... Setting up python3-lib2to3 (3.9.4-0ubuntu1) ... Setting up python3-coloredlogs (7.3-2) ... Setting up pythonpy (0.4.11b-3) ... Setting up python3-logbook (1.5.3-4build1) ... Setting up libpangocairo-1.0-0:amd64 (1.48.2-1build2) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-commonmark (0.9.1-3) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up python3-pkg-resources (52.0.0-3) ... Setting up python3-distutils (3.9.4-0ubuntu1) ... Setting up dh-python (4.20201102ubuntu4) ... Setting up python3-geneimpacts (0.3.7-3) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-pyfaidx (0.5.9.2-1) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-tornado (6.1.0-1build1) ... Setting up python3-argh (0.26.2-1.1) ... Setting up libxft2:amd64 (2.3.3-0ubuntu3) ... Setting up libplexus-io-java (3.2.0-1.1) ... Setting up libglx-mesa0:amd64 (21.0.1-2) ... Setting up python3-setuptools (52.0.0-3) ... Setting up libxi6:amd64 (2:1.7.10-1build2) ... Setting up libglx0:amd64 (1.3.2-1) ... Setting up python3-py (1.10.0-1) ... Setting up python3-joblib (0.17.0-2) ... Setting up libmaven3-core-java (3.6.3-5) ... Setting up python3-babel (2.8.0+dfsg.1-6) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-colorama (0.4.4-1) ... Setting up python3-colorlog (4.7.2-1) ... Setting up python3-pbr (5.5.1-0ubuntu1) ... update-alternatives: using /usr/bin/python3-pbr to provide /usr/bin/pbr (pbr) in auto mode Setting up libsis-jhdf5-java (19.04.0+dfsg-4) ... Setting up python3-alabaster (0.7.8-1.1) ... Setting up libmaven-shared-io-java (3.0.0-3) ... Setting up libxtst6:amd64 (2:1.2.3-1build2) ... Setting up liblog4j2-java (2.13.3-1) ... Setting up libtk8.6:amd64 (8.6.11-2) ... Setting up python3-ply (3.11-4) ... Setting up python3-threadpoolctl (2.1.0-1) ... Setting up python3-all (3.9.4-1) ... Setting up python3-yaml (5.3.1-3build1) ... Setting up debhelper (13.3.4ubuntu1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-click (7.1.2-1) ... Setting up python3-networkx (2.4-4ubuntu1) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:933: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.nodes['n1']['special'] is 0 /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_graphml.py:935: SyntaxWarning: "is" with a literal. Did you mean "=="? assert H.edges['n0','n1',1]['special'] is 0 Setting up python3-nose (1.3.7-7) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up python3-mock (4.0.3-1) ... Setting up python3-pygments (2.7.1+dfsg-2ubuntu1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up libgl1:amd64 (1.3.2-1) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-2) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-markdown (3.3.4-1) ... Setting up python3-numpy (1:1.19.5-1ubuntu2) ... Setting up python3-colormath (3.0.0-1.1) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up libplexus-archiver-java (3.6.0-2) ... Setting up python3-future (0.18.2-5) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-biopython (1.78+dfsg-4ubuntu1) ... Setting up python3-lzstring (1.0.4-1.1) ... Setting up libbarclay-java (2.1.0-3.1) ... Setting up xonsh (0.9.25+dfsg-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-spectra (0.0.11-2) ... Setting up python3-gffutils (0.10.1-2) ... Setting up python3-pomegranate (0.13.5-1) ... Setting up python3-pandas-lib:amd64 (1.1.5+dfsg-2) ... Setting up python3-sklearn-lib:amd64 (0.23.2-5ubuntu2) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-2ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1ubuntu2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-sklearn (0.23.2-5ubuntu2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up libcurl4:amd64 (7.74.0-1ubuntu2) ... Setting up libstaden-read14:amd64 (1.14.13-4) ... Setting up multiqc (1.9+dfsg-2) ... /usr/lib/python3/dist-packages/multiqc/modules/custom_content/custom_content.py:71: SyntaxWarning: "is not" with a literal. Did you mean "!="? cust_mods[c_id]['config'].update( { k:v for k, v in f.items() if k is not 'data' } ) Setting up libhts3:amd64 (1.11-4) ... Setting up python3-pysam (0.15.4+ds-3build2) ... Setting up python3-pytest (6.0.2-2ubuntu1) ... Setting up atropos (1.1.29+dfsg-1) ... Setting up bcftools (1.11-1) ... Setting up rna-star (2.7.8a+dfsg-2) ... Setting up samtools (1.11-1) ... Setting up python3-vcf (0.6.8+git20170215.476169c-7build2) ... Setting up salmon (1.4.0+ds1-1build1) ... Setting up python3-cyvcf2 (0.30.4-4) ... Setting up r-base-core (4.0.4-1build1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up r-cran-nozzle.r1 (1.1-1+dfsg-4build1) ... Setting up r-cran-gtable (0.3.0+dfsg-2build1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-sourcetools (0.1.7-3) ... Setting up r-cran-futile.options (1.0.1-3build1) ... Setting up r-cran-lattice (0.20-41-1build1) ... Setting up r-cran-ps (1.5.0-1) ... Setting up r-cran-nlme (3.1.152-1) ... Setting up r-cran-farver (2.0.3-1build2) ... Setting up r-cran-formatr (1.7-2build1) ... Setting up r-cran-xml (3.99-0.5-1) ... Setting up python3-pytest-mock (1.10.4-4) ... Setting up r-cran-viridislite (0.3.0-4) ... Setting up umis (1.0.7-1build1) ... Setting up r-cran-locfit (1.5-9.4-2build1) ... Setting up lumpy-sv (0.3.1+dfsg-5) ... Setting up r-cran-globaloptions (0.1.2-1) ... Setting up r-cran-cluster (2.1.1-1build1) ... Setting up libtabixpp0:amd64 (1.1.0-4ubuntu1) ... Setting up r-cran-clipr (0.7.1-1) ... Setting up r-cran-commonmark (1.7-2) ... Setting up r-cran-r6 (2.5.0-1) ... Setting up r-cran-pkgkitten (0.2.1-1) ... Setting up r-cran-magrittr (2.0.1-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up libseqlib2:amd64 (1.2.0+dfsg-4) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-cran-littler (0.3.12-1) ... Setting up r-cran-fs (1.5.0+dfsg-1) ... Setting up r-cran-rcpp (1.0.6-1) ... Setting up r-cran-curl (4.3+dfsg-1build1) ... Setting up r-cran-codetools (0.2-18-1) ... Setting up r-cran-brio (1.1.1-1) ... Setting up r-cran-diffobj (0.3.2-1) ... Setting up r-cran-rematch (1.0.1-3) ... Setting up python3-pybedtools (0.8.0-5build2) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-rlang (0.4.10-1ubuntu1) ... Setting up r-cran-matrixstats (0.58.0-2) ... Setting up r-cran-gridbase (0.4-7-5build1) ... Setting up r-cran-logging (0.10-108-2build1) ... Setting up r-cran-assertthat (0.2.1-2build1) ... Setting up littler (0.3.12-1) ... Setting up vt (0.57721+ds-3) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-xfun (0.20-1) ... Setting up r-cran-vgam (1.1-5-1) ... Setting up r-cran-sys (3.4-1) ... Setting up r-cran-plogr (0.2.0-3build1) ... Setting up r-cran-withr (2.4.1-1) ... Setting up r-cran-backports (1.2.1-1) ... Setting up r-cran-processx (3.4.5-1) ... Setting up r-cran-mime (0.9-1build1) ... Setting up r-cran-praise (1.0.0-4build1) ... Setting up r-cran-generics (0.1.0-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-iterators (1.0.13-1) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-yaml (2.2.1-1build1) ... Setting up r-cran-lambda.r (1.2.4-2build1) ... Setting up r-cran-xml2 (1.3.2-1build1) ... Setting up r-cran-evaluate (0.14-2build1) ... Setting up r-cran-dbi (1.1.1-1) ... Setting up r-cran-highr (0.8+dfsg-2build1) ... Setting up r-cran-foreach (1.5.1-1) ... Setting up r-cran-prettyunits (1.1.1-2build1) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-bioc-rhdf5lib (1.12.1+dfsg-2) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up r-cran-cairo (1.5-12.2-1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-data.table (1.13.6+dfsg-1) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-bioc-rhdf5filters (1.2.0+dfsg2-1) ... Setting up r-cran-bit (4.0.4+dfsg-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-clue (0.3-58-1) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2build1) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-cran-rprojroot (2.0.2-1) ... Setting up r-cran-bit64 (4.0.5-1) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-cran-shape (1.4.5-1) ... Setting up r-cran-askpass (1.1-2) ... Setting up r-cran-fastmap (1.1.0-1) ... Setting up r-cran-png (0.1-7-4) ... Setting up r-bioc-biobase (2.50.0-1build1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-rstudioapi (0.13-1) ... Setting up r-cran-pkgconfig (2.0.3-2build1) ... Setting up r-cran-lasso2 (1.2-21.1-1) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-colorspace (2.0-0+dfsg-1) ... Setting up r-cran-stringi (1.5.3-1) ... Setting up r-cran-markdown (1.1+dfsg-1build1) ... Setting up r-cran-cpp11 (0.2.6-1) ... Setting up r-cran-plyr (1.8.6-2build1) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4build1) ... Setting up r-cran-gridextra (2.3-3build1) ... Setting up r-bioc-limma (3.46.0+dfsg-1) ... Setting up r-cran-purrr (0.3.4-1build1) ... Setting up r-cran-later (1.1.0.1+dfsg-1) ... Setting up r-cran-matrix (1.3-2+really1.3-2-0ubuntu1) ... Setting up r-cran-circlize (0.4.12-1) ... Setting up r-cran-htmltools (0.5.1.1-1) ... Setting up r-cran-tinytex (0.29-1) ... Setting up r-bioc-tximport (1.18.0+dfsg-1) ... Setting up libvcflib1:amd64 (1.0.2+dfsg-2) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-bioc-dnacopy (1.64.0-1) ... Setting up python3-mirtop (0.4.23-1) ... /usr/lib/python3/dist-packages/mirtop/mirna/mintplates.py:512: SyntaxWarning: "is" with a literal. Did you mean "=="? if prefix is '': Setting up r-cran-cachem (1.0.3-1) ... Setting up r-cran-tmvnsim (1.0-2-1) ... Setting up r-cran-rcpparmadillo (0.10.2.1.0-1build1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up r-cran-rjson (0.2.20-2) ... Setting up r-cran-rcurl (1.98-1.2-1build1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.1-1build1) ... Setting up r-cran-lubridate (1.7.9.2+dfsg-1) ... Setting up r-cran-reshape (0.8.8-2build1) ... Setting up r-cran-openssl (1.4.3+dfsg-2) ... Setting up r-bioc-all (1.32.0-1) ... Setting up r-cran-stringr (1.4.0-2build1) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-cran-selectr (0.4-2-2build1) ... Setting up r-bioc-edger (3.32.1+dfsg-1) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-cran-desc (1.2.0-3build1) ... Setting up r-bioc-rhdf5 (2.34.0+dfsg-1) ... Setting up r-cran-getoptlong (1.0.5+dfsg-1) ... Setting up r-cran-munsell (0.5.0-2build1) ... Setting up r-cran-survival (3.2-7-1) ... Setting up cnvkit (0.9.8-1) ... Setting up r-bioc-consensusclusterplus (1.54.0-1) ... Setting up r-cran-mnormt (2.0.2-1) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-cran-httr (1.4.2-1) ... Setting up r-cran-scales (1.1.1-1build1) ... Setting up r-cran-memoise (2.0.0-1) ... Setting up r-cran-promises (1.1.1+dfsg-1) ... Setting up r-bioc-complexheatmap (2.6.2+dfsg-1) ... Setting up freebayes (1.3.5-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-knitr (1.31+dfsg-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-other-wasabi (1.0.1-2build1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-cran-httpuv (1.5.5+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-cran-shiny (1.5.0+dfsg-1) ... Setting up r-cran-forcats (0.5.1-1) ... Setting up r-cran-psych (2.0.12-1) ... Setting up r-cran-tidyselect (1.1.0+dfsg-1build1) ... Setting up r-cran-rvest (0.3.6-1) ... Setting up r-cran-hms (1.0.0-1) ... Setting up r-cran-rmarkdown (2.6+dfsg-1) ... Setting up r-cran-blob (1.2.1-2build1) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-cran-dplyr (1.0.4-1) ... Setting up r-cran-dbplyr (2.1.0-1) ... Setting up r-cran-rsqlite (2.2.3-1) ... Setting up r-cran-progress (1.2.2-2build1) ... Setting up r-cran-reprex (1.0.0-1) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-bioc-biocfilecache (1.14.0+dfsg-1) ... Setting up r-bioc-annotationdbi (1.52.0-1) ... Setting up r-cran-cellranger (1.1.0-3) ... Setting up r-cran-rematch2 (2.1.2-2build1) ... Setting up r-bioc-annotate (1.68.0+dfsg-1) ... Setting up r-cran-readr (1.4.0-1) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up r-bioc-biomart (2.46.2+dfsg-1) ... Setting up r-cran-tidyr (1.1.2-1) ... Setting up r-bioc-genefilter (1.72.1-1) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up r-bioc-geneplotter (1.68.0-1) ... Setting up r-bioc-rtracklayer (1.50.0-1) ... Setting up r-cran-readxl (1.3.1-2build2) ... Setting up r-bioc-genomicfeatures (1.42.1+dfsg-1) ... Setting up r-cran-haven (2.3.1-1) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-broom (0.7.4+dfsg-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up r-bioc-bsgenome (1.58.0-1) ... Setting up r-bioc-variantannotation (1.36.0-1) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-bioc-deseq2 (1.30.1+dfsg-1) ... Setting up libvcflib-tools (1.0.2+dfsg-2) ... Setting up r-cran-modelr (0.1.8-1build1) ... Setting up r-bioc-purecn (1.20.0+dfsg-3) ... Setting up r-cran-ggrepel (0.9.1-1) ... Setting up r-cran-ggdendro (0.1.22+dfsg-1) ... Setting up r-bioc-titancna (1.28.0-2) ... Setting up r-cran-cowplot (1.1.1+dfsg-1) ... Setting up r-bioc-htsfilter (1.30.1+dfsg-1) ... Setting up r-cran-tidyverse (1.3.0-2build1) ... Setting up r-bioc-degreport (1.26.0+dfsg-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:amd64 (11.0.11+8-0ubuntu2) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.11+8-0ubuntu2) ... Setting up default-jre (2:1.11-72) ... Setting up ant (1.10.9-3) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certigna_Root_CA.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:ACCVRAIZ1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Izenpe.com.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Secure_Global_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:GTS_Root_R4.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:ISRG_Root_X1.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:Certigna.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:GTS_Root_R2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GTS_Root_R1.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TrustCor_ECA-1.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:SecureTrust_CA.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:EC-ACC.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:SecureSign_RootCA11.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:COMODO_ECC_Certification_Authority.pem done. Setting up ant-optional (1.10.9-3) ... Setting up libistack-commons-java (3.0.6-5) ... Setting up libcodemodel-java (2.6+jaxb2.3.0.1-10) ... Setting up libtxw2-java (2.3.0.1-10) ... Setting up libjaxb-java (2.3.0.1-10) ... Setting up libhtsjdk-java (2.23.0+dfsg-2) ... Setting up fastqc (0.11.9+dfsg-4) ... Setting up libpicard-java (2.24.1+dfsg-1) ... Setting up picard-tools (2.24.1+dfsg-1) ... Processing triggers for ca-certificates (20210119build1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for libc-bin (2.33-0ubuntu5) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-3) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-3) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.5.3-1) ... Setting up python3-recommonmark (0.6.0+ds-1) ... Setting up python3-seqcluster (1.2.7+ds-1) ... Setting up sbuild-build-depends-bcbio-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-140-generic amd64 (x86_64) Toolchain package versions: binutils_2.36.1-6ubuntu1 dpkg-dev_1.20.7.1ubuntu4 g++-10_10.2.1-24ubuntu1 gcc-10_10.2.1-24ubuntu1 libc6-dev_2.33-0ubuntu5 libstdc++-10-dev_10.2.1-24ubuntu1 libstdc++6_11-20210404-1ubuntu1 linux-libc-dev_5.11.0-13.14 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1build1 ant_1.10.9-3 ant-optional_1.10.9-3 apt_2.2.2ubuntu1 atropos_1.1.29+dfsg-1 autoconf_2.69-14 automake_1:1.16.3-2ubuntu1 autopoint_0.21-3ubuntu2 autotools-dev_20180224.1+nmu1 bamkit_0.0.1+git20170413.ccd079d-2 base-files_11ubuntu18 base-passwd_3.5.49 bash_5.1-2ubuntu1 bcftools_1.11-1 bedtools_2.30.0+dfsg-1 binutils_2.36.1-6ubuntu1 binutils-common_2.36.1-6ubuntu1 binutils-x86-64-linux-gnu_2.36.1-6ubuntu1 biobambam2_2.0.179+ds-1 bowtie2_2.4.2-2 bsdextrautils_2.36.1-7ubuntu2 bsdutils_1:2.36.1-7ubuntu2 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu3 ca-certificates_20210119build1 ca-certificates-java_20190909 cnvkit_0.9.8-1 coreutils_8.32-4ubuntu2 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.1-24ubuntu1 cython3_0.29.21-1ubuntu3 dash_0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1 debconf_1.5.74 debhelper_13.3.4ubuntu1 debianutils_4.11.2 debugedit_1:0.1-0ubuntu2 default-jre_2:1.11-72 default-jre-headless_2:1.11-72 dh-autoreconf_20 dh-python_4.20201102ubuntu4 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-3ubuntu1 docutils-common_0.16+dfsg-3 dpkg_1.20.7.1ubuntu4 dpkg-dev_1.20.7.1ubuntu4 dwz_0.14-1 e2fsprogs_1.45.7-1ubuntu2 fakeroot_1.25.3-1.1ubuntu2 fastqc_0.11.9+dfsg-4 file_1:5.39-3 findutils_4.8.0-1ubuntu1 fontconfig_2.13.1-4.2ubuntu3 fontconfig-config_2.13.1-4.2ubuntu3 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-2 fonts-lato_2.0-2.1 fonts-lyx_2.3.6-1 fonts-mathjax_2.7.9+dfsg-1 freebayes_1.3.5-1 g++_4:10.2.0-1ubuntu1 g++-10_10.2.1-24ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.1-24ubuntu1 gcc-10-base_10.2.1-24ubuntu1 gcc-11-base_11-20210404-1ubuntu1 gettext_0.21-3ubuntu2 gettext-base_0.21-3ubuntu2 gffread_0.12.1-4 gpg_2.2.20-1ubuntu3 gpg-agent_2.2.20-1ubuntu3 gpgconf_2.2.20-1ubuntu3 gpgv_2.2.20-1ubuntu3 grabix_0.1.7-2build1 grep_3.6-1 groff-base_1.22.4-6 gsort_0.1.4-3 gzip_1.10-2ubuntu3 hisat2_2.2.1-2 hostname_3.23 hts-nim-tools_0.2.1-1 init_1.60 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 java-common_0.72 libacl1_2.2.53-10ubuntu1 libactivation-java_1.2.0-2 libaec0_1.0.4-1 libaopalliance-java_20070526-6 libapache-pom-java_18-1 libapparmor1_3.0.0-0ubuntu7 libapt-pkg6.0_2.2.2ubuntu1 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build21.04.0 libargs4j-java_2.33-1.1 libasan6_11-20210404-1ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libasound2_1.2.4-1.1ubuntu2 libasound2-data_1.2.4-1.1ubuntu2 libassuan0_2.5.4-1ubuntu1 libatinject-jsr330-api-java_1.0+ds1-5 libatomic1_11-20210404-1ubuntu1 libattr1_1:2.4.48-6build1 libaudit-common_1:3.0-2ubuntu1 libaudit1_1:3.0-2ubuntu1 libavahi-client3_0.8-5ubuntu2 libavahi-common-data_0.8-5ubuntu2 libavahi-common3_0.8-5ubuntu2 libbamtools2.5.1_2.5.1+dfsg-8 libbarclay-java_2.1.0-3.1 libbinutils_2.36.1-6ubuntu1 libblas3_3.9.0-3ubuntu2 libblkid1_2.36.1-7ubuntu2 libblosc1_1.20.1+ds1-2 libboost-dev_1.74.0.3ubuntu5 libboost-filesystem1.74.0_1.74.0-8ubuntu2 libboost-iostreams1.74.0_1.74.0-8ubuntu2 libboost-program-options1.74.0_1.74.0-8ubuntu2 libboost1.74-dev_1.74.0-8ubuntu2 libbrotli1_1.0.9-2build2 libbsd0_0.11.3-1ubuntu2 libbz2-1.0_1.0.8-4ubuntu3 libc-ares2_1.17.1-1 libc-bin_2.33-0ubuntu5 libc-dev-bin_2.33-0ubuntu5 libc6_2.33-0ubuntu5 libc6-dev_2.33-0ubuntu5 libcairo2_1.16.0-5ubuntu1 libcap-ng0_0.7.9-2.2build1 libcap2_1:2.44-1build1 libcc1-0_11-20210404-1ubuntu1 libcdi-api-java_1.2-3 libcmark-gfm-extensions0_0.29.0.gfm.0-6 libcmark-gfm0_0.29.0.gfm.0-6 libcodemodel-java_2.6+jaxb2.3.0.1-10 libcom-err2_1.45.7-1ubuntu2 libcommons-cli-java_1.4-2 libcommons-codec-java_1.15-1 libcommons-compress-java_1.20-1 libcommons-io-java_2.8.0-1 libcommons-jexl2-java_2.1.1-5 libcommons-lang3-java_3.11-1 libcommons-logging-java_1.2-2 libcommons-math3-java_3.6.1-3 libcommons-parent-java_43-1 libcrypt-dev_1:4.4.17-1ubuntu3 libcrypt1_1:4.4.17-1ubuntu3 libcryptsetup12_2:2.3.4-1ubuntu3 libctf-nobfd0_2.36.1-6ubuntu1 libctf0_2.36.1-6ubuntu1 libcups2_2.3.3op2-3ubuntu3 libcurl3-gnutls_7.74.0-1ubuntu2 libcurl4_7.74.0-1ubuntu2 libdatrie1_0.2.13-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu4 libdbus-1-3_1.12.20-1ubuntu3 libdebconfclient0_0.256ubuntu3 libdebhelper-perl_13.3.4ubuntu1 libdeflate0_1.7-1ubuntu1 libdevmapper1.02.1_2:1.02.175-2ubuntu4 libdisorder0_0.0.2+git20130809.8062ee1-2 libdivsufsort3_2.0.1-5 libdom4j-java_2.1.3-1 libdpkg-perl_1.20.7.1ubuntu4 libdrm-amdgpu1_2.4.104-1build1 libdrm-common_2.4.104-1build1 libdrm-intel1_2.4.104-1build1 libdrm-nouveau2_2.4.104-1build1 libdrm-radeon1_2.4.104-1build1 libdrm2_2.4.104-1build1 libdtd-parser-java_1.2-1 libdw1_0.183-6 libedit2_3.1-20191231-2 libelf1_0.183-6 libexpat1_2.2.10-2 libext2fs2_1.45.7-1ubuntu2 libfakeroot_1.25.3-1.1ubuntu2 libfastahack0_1.0.0+dfsg-7 libfastinfoset-java_1.2.12-3 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu5 libfile-stripnondeterminism-perl_1.11.0-1 libfindbin-libs-perl_2.190.02-1 libfml0_0.1+git20190320.b499514-1 libfontconfig1_2.13.1-4.2ubuntu3 libfreemarker-java_2.3.23-11 libfreetype6_2.10.4+dfsg-1build1 libfribidi0_1.0.8-2ubuntu1 libgatk-native-bindings-java_1.0.0-2.1 libgcc-10-dev_10.2.1-24ubuntu1 libgcc-s1_11-20210404-1ubuntu1 libgclib2_0.11.10+ds-2 libgcrypt20_1.8.7-2ubuntu2 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgeronimo-annotation-1.3-spec-java_1.3-1 libgeronimo-interceptor-3.0-spec-java_1.0.1-4fakesync libgfortran5_11-20210404-1ubuntu1 libgif7_5.1.9-2 libgkl-java_0.8.7+dfsg-1 libgl1_1.3.2-1 libgl1-mesa-dri_21.0.1-2 libglapi-mesa_21.0.1-2 libglib2.0-0_2.68.0-1 libglvnd0_1.3.2-1 libglx-mesa0_21.0.1-2 libglx0_1.3.2-1 libgmp10_2:6.2.1+dfsg-1ubuntu2 libgnutls30_3.7.0-5ubuntu1 libgomp1_11-20210404-1ubuntu1 libgoogle-gson-java_2.8.6-1 libgpg-error0_1.38-2build1 libgpgme11_1.14.0-1ubuntu3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.18.3-4 libgssapi3-heimdal_7.7.0+dfsg-2 libguava-java_29.0-6 libguice-java_4.2.3-2 libgzstream0_1.5+dfsg-5 libharfbuzz0b_2.7.4-1ubuntu1 libhcrypto4-heimdal_7.7.0+dfsg-2 libhdf5-103-1_1.10.6+repack-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed6_3.7-2.1 libhts3_1.11-4 libhtscodecs2_0.5-3 libhtsjdk-java_2.23.0+dfsg-2 libhttpclient-java_4.5.13-1 libhttpcore-java_4.4.14-1 libhx509-5-heimdal_7.7.0+dfsg-2 libice6_2:1.0.10-1 libicu67_67.1-6ubuntu2 libidn2-0_2.3.0-5 libimagequant0_2.12.2-1.1 libip4tc2_1.8.7-1ubuntu2 libisl22_0.22.1-1 libisl23_0.23-1build1 libistack-commons-java_3.0.6-5 libitm1_11-20210404-1ubuntu1 libjaxb-api-java_2.3.1-1 libjaxb-java_2.3.0.1-10 libjaxen-java_1.1.6-4 libjbig0_2.1-3.1build1 libjbzip2-java_0.9.1-5 libjemalloc2_5.2.1-2 libjoptsimple-java_5.0.4-4 libjpeg-turbo8_2.0.6-0ubuntu2 libjpeg8_8c-2ubuntu8 libjs-bootstrap_3.4.1+dfsg-2 libjs-d3_3.5.17-4 libjs-es5-shim_4.5.15-1 libjs-highlight.js_9.18.5+dfsg1-1 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-datatables_1.10.21+dfsg-1 libjs-jquery-metadata_12-3 libjs-jquery-selectize.js_0.12.6+dfsg-1.1 libjs-jquery-tablesorter_1:2.31.3+dfsg1-1 libjs-jquery-ui_1.12.1+dfsg-8 libjs-json_0~20190826+~1.0.5-2 libjs-mathjax_2.7.9+dfsg-1 libjs-microplugin.js_0.0.3+dfsg-1.1 libjs-modernizr_2.6.2+ds1-4 libjs-prettify_2015.12.04+dfsg-1.1 libjs-sifter.js_0.6.0+dfsg-1 libjs-sphinxdoc_3.5.3-1 libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1 libjs-underscore_1.9.1~dfsg-1 libjson-c5_0.15-2build2 libjsoncpp24_1.9.4-4 libjsoup-java_1.10.2-2 libjsr305-java_0.1~+svn49-11 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_28-1ubuntu2 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 liblapack3_3.9.0-3ubuntu2 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.57+dfsg-2ubuntu1 liblightcouch-java_0.0.6-1.1 libllvm11_1:11.0.1-2ubuntu2 liblockfile-bin_1.17-1 liblockfile1_1.17-1 liblog4j2-java_2.13.3-1 liblsan0_11-20210404-1ubuntu1 liblz4-1_1.9.3-1build1 liblzma5_5.2.5-1.0build2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmaus2-2_2.0.768+dfsg-1 libmaven-file-management-java_3.0.0-1 libmaven-parent-java_31-2 libmaven-resolver-java_1.4.2-3build1 libmaven-shared-io-java_3.0.0-3 libmaven-shared-utils-java_3.3.0-1 libmaven3-core-java_3.6.3-5 libmd0_1.0.3-3build1 libmongodb-java_3.6.3-2 libmount1_2.36.1-7ubuntu2 libmpc3_1.2.0-1build1 libmpdec3_2.5.1-2 libmpfr6_4.1.0-3build1 libncurses6_6.2+20201114-2build1 libncursesw6_6.2+20201114-2build1 libnettle8_3.7-2.1 libnghttp2-14_1.43.0-1 libngs-java_2.10.9-1 libngs-sdk-dev_2.10.9-1 libngs-sdk2_2.10.9-1 libnode72_12.21.0~dfsg-3ubuntu1 libnpth0_1.6-3 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnspr4_2:4.29-1 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libnss3_2:3.63-1ubuntu1 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpango-1.0-0_1.48.2-1build2 libpangocairo-1.0-0_1.48.2-1build2 libpangoft2-1.0-0_1.48.2-1build2 libpaper-utils_1.1.28 libpaper1_1.1.28 libpciaccess0_0.16-1build2 libpcre2-8-0_10.36-2ubuntu5 libpcre3_2:8.39-13build3 libpcsclite1_1.9.1-1 libperl5.30_5.30.3-4 libperl5.32_5.32.1-3ubuntu2 libpicard-java_2.24.1+dfsg-1 libpipeline1_1.5.3-1 libpixman-1-0_0.40.0-1build2 libplexus-archiver-java_3.6.0-2 libplexus-cipher-java_1.8-2 libplexus-classworlds-java_2.6.0-1 libplexus-component-annotations-java_2.1.0-1 libplexus-interpolation-java_1.26-1 libplexus-io-java_3.2.0-1.1 libplexus-sec-dispatcher-java_1.4-4 libplexus-utils2-java_3.3.0-1 libpng16-16_1.6.37-3build3 libprocps8_2:3.3.16-5ubuntu3 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.4-1 libpython3.9-minimal_3.9.4-1 libpython3.9-stdlib_3.9.4-1 libquadmath0_11-20210404-1ubuntu1 libreadline8_8.1-1 librelaxng-datatype-java_1.0+ds1-3.1 librngom-java_2.3.0.1-10 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build2 libsasl2-2_2.1.27+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27+dfsg-2ubuntu1 libseccomp2_2.5.1-1ubuntu1 libselinux1_3.1-3build1 libsemanage-common_3.1-1ubuntu1 libsemanage1_3.1-1ubuntu1 libsensors-config_1:3.6.0-7 libsensors5_1:3.6.0-7 libsepol1_3.1-1ubuntu1 libseqlib2_1.2.0+dfsg-4 libsigsegv2_2.13-1ubuntu1 libsis-base-java_18.09~pre1+git20180928.45fbd31+dfsg-3 libsis-base-jni_18.09~pre1+git20180928.45fbd31+dfsg-3 libsis-jhdf5-java_19.04.0+dfsg-4 libsis-jhdf5-jni_19.04.0+dfsg-4 libsisu-inject-java_0.3.4-2 libsisu-plexus-java_0.3.4-3 libslf4j-java_1.7.30-1 libsm6_2:1.2.3-1 libsmartcols1_2.36.1-7ubuntu2 libsmithwaterman0_0.0+git20160702.2610e25-11 libsnappy-java_1.1.8.3-1 libsnappy-jni_1.1.8.3-1 libsnappy1v5_1.1.8-1build1 libsqlite3-0_3.34.1-3 libss2_1.45.7-1ubuntu2 libssh-4_0.9.5-1 libssl1.1_1.1.1j-1ubuntu3 libssw0_1.1-13 libstaden-read14_1.14.13-4 libstax-ex-java_1.7.8-3 libstdc++-10-dev_10.2.1-24ubuntu1 libstdc++6_11-20210404-1ubuntu1 libstreambuffer-java_1.5.4-1.1 libsub-override-perl_0.09-2 libsystemd0_247.3-3ubuntu3 libsz2_1.0.4-1 libtabixpp0_1.1.0-4ubuntu1 libtasn1-6_4.16.0-2 libtbb2_2020.3-1 libtcl8.6_8.6.11+dfsg-1 libthai-data_0.1.28-4 libthai0_0.1.28-4 libtiff5_4.2.0-1build1 libtinfo6_6.2+20201114-2build1 libtirpc-common_1.3.1-1build1 libtirpc-dev_1.3.1-1build1 libtirpc3_1.3.1-1build1 libtk8.6_8.6.11-2 libtool_2.4.6-15 libtsan0_11-20210404-1ubuntu1 libtxw2-java_2.3.0.1-10 libubsan1_11-20210404-1ubuntu1 libuchardet0_0.0.7-1 libudev1_247.3-3ubuntu3 libunistring2_0.9.10-4 libuuid1_2.36.1-7ubuntu2 libuv1_1.40.0-1 libvcflib-tools_1.0.2+dfsg-2 libvcflib1_1.0.2+dfsg-2 libvulkan1_1.2.162.0-1 libwagon-http-java_3.3.4-1 libwagon-provider-api-java_3.3.4-1 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libwind0-heimdal_7.7.0+dfsg-2 libx11-6_2:1.7.0-2build2 libx11-data_2:1.7.0-2build2 libx11-xcb1_2:1.7.0-2build2 libxau6_1:1.0.9-1build3 libxcb-dri2-0_1.14-3ubuntu1 libxcb-dri3-0_1.14-3ubuntu1 libxcb-glx0_1.14-3ubuntu1 libxcb-present0_1.14-3ubuntu1 libxcb-render0_1.14-3ubuntu1 libxcb-shm0_1.14-3ubuntu1 libxcb-sync1_1.14-3ubuntu1 libxcb-xfixes0_1.14-3ubuntu1 libxcb1_1.14-3ubuntu1 libxdmcp6_1:1.1.3-0ubuntu3 libxext6_2:1.3.4-0ubuntu3 libxfixes3_1:5.0.3-2build1 libxft2_2.3.3-0ubuntu3 libxi6_2:1.7.10-1build2 libxml-commons-resolver1.1-java_1.2-11 libxml2_2.9.10+dfsg-6.3build2 libxrender1_1:0.9.10-1build2 libxshmfence1_1.3-1build2 libxsom-java_2.3.0.1-10 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxtst6_2:1.2.3-1build2 libxxf86vm1_1:1.1.4-1build1 libxxhash0_0.8.0-2 libxz-java_1.8-2 libyaml-0-2_0.2.2-1 libzstd1_1.4.8+dfsg-2build2 linux-libc-dev_5.11.0-13.14 littler_0.3.12-1 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu8 logsave_1.45.7-1ubuntu2 lsb-base_11.1.0ubuntu2 lto-disabled-list_6 lumpy-sv_0.3.1+dfsg-5 m4_1.4.18-5 mailcap_3.68ubuntu1 make_4.3-4ubuntu1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mosdepth_0.3.1+ds-2 mount_2.36.1-7ubuntu2 multiqc_1.9+dfsg-2 ncurses-base_6.2+20201114-2build1 ncurses-bin_6.2+20201114-2build1 nim_1.4.2-1 nim-hts-dev_0.3.14+ds-1 node-highlight.js_9.18.5+dfsg1-1 node-html5shiv_3.7.3+dfsg-3 node-normalize.css_8.0.1-3 nodejs_12.21.0~dfsg-3ubuntu1 openjdk-11-jre_11.0.11+8-0ubuntu2 openjdk-11-jre-headless_11.0.11+8-0ubuntu2 openssl_1.1.1j-1ubuntu3 optipng_0.7.7-1 pandoc_2.9.2.1-1ubuntu3 pandoc-data_2.9.2.1-1ubuntu3 passwd_1:4.8.1-1ubuntu8 patch_2.7.6-7 perl_5.32.1-3ubuntu2 perl-base_5.32.1-3ubuntu2 perl-modules-5.30_5.30.3-4 perl-modules-5.32_5.32.1-3ubuntu2 picard-tools_2.24.1+dfsg-1 pinentry-curses_1.1.0-4build1 pkgbinarymangler_147 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu3 python-babel-localedata_2.8.0+dfsg.1-6 python-matplotlib-data_3.3.4-1 python3_3.9.4-1 python3-alabaster_0.7.8-1.1 python3-all_3.9.4-1 python3-argcomplete_1.8.1-1.5 python3-argh_0.26.2-1.1 python3-attr_20.3.0-1 python3-babel_2.8.0+dfsg.1-6 python3-biopython_1.78+dfsg-4ubuntu1 python3-certifi_2020.6.20-1 python3-chardet_4.0.0-1 python3-click_7.1.2-1 python3-colorama_0.4.4-1 python3-coloredlogs_7.3-2 python3-colorlog_4.7.2-1 python3-colormath_3.0.0-1.1 python3-commonmark_0.9.1-3 python3-cycler_0.10.0-3 python3-cyvcf2_0.30.4-4 python3-dateutil_2.8.1-5 python3-decorator_4.4.2-0ubuntu1 python3-distutils_3.9.4-0ubuntu1 python3-docutils_0.16+dfsg-3 python3-future_0.18.2-5 python3-geneimpacts_0.3.7-3 python3-gffutils_0.10.1-2 python3-humanfriendly_9.1-1 python3-idna_2.10-1 python3-imagesize_1.2.0-2 python3-importlib-metadata_1.6.0-2 python3-iniconfig_1.1.1-1 python3-jinja2_2.11.2-1 python3-joblib_0.17.0-2 python3-kiwisolver_1.3.1-1build1 python3-lib2to3_3.9.4-0ubuntu1 python3-logbook_1.5.3-4build1 python3-lzstring_1.0.4-1.1 python3-markdown_3.3.4-1 python3-markupsafe_1.1.1-1build2 python3-matplotlib_3.3.4-1 python3-minimal_3.9.4-1 python3-mirtop_0.4.23-1 python3-mock_4.0.3-1 python3-more-itertools_4.2.0-3 python3-networkx_2.4-4ubuntu1 python3-nose_1.3.7-7 python3-numpy_1:1.19.5-1ubuntu2 python3-packaging_20.9-2 python3-pandas_1.1.5+dfsg-2 python3-pandas-lib_1.1.5+dfsg-2 python3-pbr_5.5.1-0ubuntu1 python3-pil_8.1.2-1 python3-pkg-resources_52.0.0-3 python3-pluggy_0.13.0-6 python3-ply_3.11-4 python3-pomegranate_0.13.5-1 python3-progressbar_2.5-2 python3-psutil_5.8.0-1 python3-py_1.10.0-1 python3-pybedtools_0.8.0-5build2 python3-pyfaidx_0.5.9.2-1 python3-pygments_2.7.1+dfsg-2ubuntu1 python3-pyparsing_2.4.7-1 python3-pysam_0.15.4+ds-3build2 python3-pytest_6.0.2-2ubuntu1 python3-pytest-mock_1.10.4-4 python3-recommonmark_0.6.0+ds-1 python3-regex_0.1.20201113-1 python3-reportlab_3.5.66-1 python3-reportlab-accel_3.5.66-1 python3-requests_2.25.1+dfsg-2 python3-roman_2.0.0-5 python3-scipy_1.6.0-2 python3-seqcluster_1.2.7+ds-1 python3-setuptools_52.0.0-3 python3-simplejson_3.17.2-1 python3-six_1.15.0-2 python3-sklearn_0.23.2-5ubuntu2 python3-sklearn-lib_0.23.2-5ubuntu2 python3-snowballstemmer_2.1.0-1 python3-spectra_0.0.11-2 python3-sphinx_3.5.3-1 python3-threadpoolctl_2.1.0-1 python3-toml_0.10.1-1 python3-toolz_0.9.0-1.1 python3-tornado_6.1.0-1build1 python3-tz_2021.1-1 python3-urllib3_1.26.2-1ubuntu1 python3-vcf_0.6.8+git20170215.476169c-7build2 python3-yaml_5.3.1-3build1 python3-zipp_1.0.0-3 python3.9_3.9.4-1 python3.9-minimal_3.9.4-1 pythonpy_0.4.11b-3 r-base-core_4.0.4-1build1 r-bioc-all_1.32.0-1 r-bioc-annotate_1.68.0+dfsg-1 r-bioc-annotationdbi_1.52.0-1 r-bioc-biobase_2.50.0-1build1 r-bioc-biocfilecache_1.14.0+dfsg-1 r-bioc-biocgenerics_0.36.0-1 r-bioc-biocparallel_1.24.1-1 r-bioc-biomart_2.46.2+dfsg-1 r-bioc-biostrings_2.58.0-1 r-bioc-bsgenome_1.58.0-1 r-bioc-complexheatmap_2.6.2+dfsg-1 r-bioc-consensusclusterplus_1.54.0-1 r-bioc-degreport_1.26.0+dfsg-1 r-bioc-delayedarray_0.16.1+dfsg-1 r-bioc-deseq2_1.30.1+dfsg-1 r-bioc-dnacopy_1.64.0-1 r-bioc-edger_3.32.1+dfsg-1 r-bioc-genefilter_1.72.1-1 r-bioc-geneplotter_1.68.0-1 r-bioc-genomeinfodb_1.26.2-2 r-bioc-genomeinfodbdata_1.2.4-1 r-bioc-genomicalignments_1.26.0-1 r-bioc-genomicfeatures_1.42.1+dfsg-1 r-bioc-genomicranges_1.42.0+dfsg-1 r-bioc-htsfilter_1.30.1+dfsg-1 r-bioc-iranges_2.24.1-1 r-bioc-limma_3.46.0+dfsg-1 r-bioc-matrixgenerics_1.2.1-4 r-bioc-purecn_1.20.0+dfsg-3 r-bioc-rhdf5_2.34.0+dfsg-1 r-bioc-rhdf5filters_1.2.0+dfsg2-1 r-bioc-rhdf5lib_1.12.1+dfsg-2 r-bioc-rhtslib_1.22.0+dfsg-1 r-bioc-rsamtools_2.6.0-1 r-bioc-rtracklayer_1.50.0-1 r-bioc-s4vectors_0.28.1-1 r-bioc-summarizedexperiment_1.20.0+dfsg-1 r-bioc-titancna_1.28.0-2 r-bioc-tximport_1.18.0+dfsg-1 r-bioc-variantannotation_1.36.0-1 r-bioc-xvector_0.30.0-1 r-bioc-zlibbioc_1.36.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-assertthat_0.2.1-2build1 r-cran-backports_1.2.1-1 r-cran-base64enc_0.1-3-3 r-cran-bh_1.74.0-1 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-6-5 r-cran-blob_1.2.1-2build1 r-cran-brio_1.1.1-1 r-cran-broom_0.7.4+dfsg-1 r-cran-cachem_1.0.3-1 r-cran-cairo_1.5-12.2-1 r-cran-callr_3.5.1-1 r-cran-cellranger_1.1.0-3 r-cran-circlize_0.4.12-1 r-cran-cli_2.3.0-1 r-cran-clipr_0.7.1-1 r-cran-clue_0.3-58-1 r-cran-cluster_2.1.1-1build1 r-cran-codetools_0.2-18-1 r-cran-colorspace_2.0-0+dfsg-1 r-cran-commonmark_1.7-2 r-cran-cowplot_1.1.1+dfsg-1 r-cran-cpp11_0.2.6-1 r-cran-crayon_1.4.0-1 r-cran-curl_4.3+dfsg-1build1 r-cran-data.table_1.13.6+dfsg-1 r-cran-dbi_1.1.1-1 r-cran-dbplyr_2.1.0-1 r-cran-desc_1.2.0-3build1 r-cran-diffobj_0.3.2-1 r-cran-digest_0.6.27-1 r-cran-dplyr_1.0.4-1 r-cran-ellipsis_0.3.1-1build1 r-cran-evaluate_0.14-2build1 r-cran-fansi_0.4.2-1 r-cran-farver_2.0.3-1build2 r-cran-fastmap_1.1.0-1 r-cran-forcats_0.5.1-1 r-cran-foreach_1.5.1-1 r-cran-formatr_1.7-2build1 r-cran-fs_1.5.0+dfsg-1 r-cran-futile.logger_1.4.3-4build1 r-cran-futile.options_1.0.1-3build1 r-cran-generics_0.1.0-1 r-cran-getoptlong_1.0.5+dfsg-1 r-cran-ggdendro_0.1.22+dfsg-1 r-cran-ggplot2_3.3.3+dfsg-1 r-cran-ggrepel_0.9.1-1 r-cran-globaloptions_0.1.2-1 r-cran-glue_1.4.2-1 r-cran-gridbase_0.4-7-5build1 r-cran-gridextra_2.3-3build1 r-cran-gtable_0.3.0+dfsg-2build1 r-cran-haven_2.3.1-1 r-cran-highr_0.8+dfsg-2build1 r-cran-hms_1.0.0-1 r-cran-htmltools_0.5.1.1-1 r-cran-httpuv_1.5.5+dfsg-1 r-cran-httr_1.4.2-1 r-cran-isoband_0.2.3-2 r-cran-iterators_1.0.13-1 r-cran-jsonlite_1.7.2+dfsg-1 r-cran-knitr_1.31+dfsg-1 r-cran-labeling_0.4.2-1 r-cran-lambda.r_1.2.4-2build1 r-cran-lasso2_1.2-21.1-1 r-cran-later_1.1.0.1+dfsg-1 r-cran-lattice_0.20-41-1build1 r-cran-lifecycle_0.2.0-2build1 r-cran-littler_0.3.12-1 r-cran-locfit_1.5-9.4-2build1 r-cran-logging_0.10-108-2build1 r-cran-lubridate_1.7.9.2+dfsg-1 r-cran-magrittr_2.0.1-1 r-cran-markdown_1.1+dfsg-1build1 r-cran-mass_7.3-53.1-1 r-cran-matrix_1.3-2+really1.3-2-0ubuntu1 r-cran-matrixstats_0.58.0-2 r-cran-memoise_2.0.0-1 r-cran-mgcv_1.8-34-1 r-cran-mime_0.9-1build1 r-cran-mnormt_2.0.2-1 r-cran-modelr_0.1.8-1build1 r-cran-munsell_0.5.0-2build1 r-cran-nlme_3.1.152-1 r-cran-nozzle.r1_1.1-1+dfsg-4build1 r-cran-openssl_1.4.3+dfsg-2 r-cran-pillar_1.4.7-1 r-cran-pkgbuild_1.2.0-1 r-cran-pkgconfig_2.0.3-2build1 r-cran-pkgkitten_0.2.1-1 r-cran-pkgload_1.1.0-1 r-cran-plogr_0.2.0-3build1 r-cran-plyr_1.8.6-2build1 r-cran-png_0.1-7-4 r-cran-praise_1.0.0-4build1 r-cran-prettyunits_1.1.1-2build1 r-cran-processx_3.4.5-1 r-cran-progress_1.2.2-2build1 r-cran-promises_1.1.1+dfsg-1 r-cran-ps_1.5.0-1 r-cran-psych_2.0.12-1 r-cran-purrr_0.3.4-1build1 r-cran-r6_2.5.0-1 r-cran-rappdirs_0.3.3-1 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.6-1 r-cran-rcpparmadillo_0.10.2.1.0-1build1 r-cran-rcurl_1.98-1.2-1build1 r-cran-readr_1.4.0-1 r-cran-readxl_1.3.1-2build2 r-cran-rematch_1.0.1-3 r-cran-rematch2_2.1.2-2build1 r-cran-reprex_1.0.0-1 r-cran-reshape_0.8.8-2build1 r-cran-rjson_0.2.20-2 r-cran-rlang_0.4.10-1ubuntu1 r-cran-rmarkdown_2.6+dfsg-1 r-cran-rprojroot_2.0.2-1 r-cran-rsqlite_2.2.3-1 r-cran-rstudioapi_0.13-1 r-cran-rvest_0.3.6-1 r-cran-scales_1.1.1-1build1 r-cran-selectr_0.4-2-2build1 r-cran-shape_1.4.5-1 r-cran-shiny_1.5.0+dfsg-1 r-cran-snow_1:0.4.3-2 r-cran-sourcetools_0.1.7-3 r-cran-stringi_1.5.3-1 r-cran-stringr_1.4.0-2build1 r-cran-survival_3.2-7-1 r-cran-sys_3.4-1 r-cran-testthat_3.0.1-1 r-cran-tibble_3.0.6+dfsg-1 r-cran-tidyr_1.1.2-1 r-cran-tidyselect_1.1.0+dfsg-1build1 r-cran-tidyverse_1.3.0-2build1 r-cran-tinytex_0.29-1 r-cran-tmvnsim_1.0-2-1 r-cran-utf8_1.1.4-2 r-cran-vctrs_0.3.6-1 r-cran-vgam_1.1-5-1 r-cran-viridislite_0.3.0-4 r-cran-waldo_0.2.3-2 r-cran-withr_2.4.1-1 r-cran-xfun_0.20-1 r-cran-xml_3.99-0.5-1 r-cran-xml2_1.3.2-1build1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.2.1-1build1 r-other-wasabi_1.0.1-2build1 rapmap_0.15.0+dfsg-1build1 readline-common_8.1-1 rna-star_2.7.8a+dfsg-2 rpcsvc-proto_1.4.2-0ubuntu4 salmon_1.4.0+ds1-1build1 samblaster_0.1.26-1 samtools_1.11-1 sbuild-build-depends-bcbio-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.14 seqan-apps_2.4.0+dfsg-14ubuntu1 seqtk_1.3-2 sgml-base_1.30 sphinx-common_3.5.3-1 sphinx-rtd-theme-common_0.5.1+dfsg-1 subread_2.0.1+dfsg-1 systemd_247.3-3ubuntu3 systemd-sysv_247.3-3ubuntu3 systemd-timesyncd_247.3-3ubuntu3 sysvinit-utils_2.96-6ubuntu1 tabix_1.11-4 tar_1.34+dfsg-1build1 tophat-recondition_1.4-3 ttf-bitstream-vera_1.10-8.1 tzdata_2021a-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 umis_1.0.7-1build1 unzip_6.0-26ubuntu1 util-linux_2.36.1-7ubuntu2 vcfanno_0.3.2+ds-2 vt_0.57721+ds-3 wham-align_0.1.5-8 x11-common_1:7.7+22ubuntu1 xdg-utils_1.1.3-2ubuntu2 xml-core_0.18+nmu1 xonsh_0.9.25+dfsg-1 xz-utils_5.2.5-1.0build2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2ubuntu6 zlib1g-dev_1:1.2.11.dfsg-2ubuntu6 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Jan 26 13:23:17 2021 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bcbio_1.2.5-1.dsc dpkg-source: info: extracting bcbio in /<> dpkg-source: info: unpacking bcbio_1.2.5.orig.tar.gz dpkg-source: info: unpacking bcbio_1.2.5-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying pytest2to3.patch dpkg-source: info: applying include_tests dpkg-source: info: applying do_not_use_git.patch dpkg-source: info: applying pythonpaths.patch dpkg-source: info: applying hts_nim_tools.patch dpkg-source: warning: diff '/<>/debian/patches/collectionsAbc.patch' doesn't contain any patch dpkg-source: info: applying collectionsAbc.patch dpkg-source: info: applying cnvkitPath.patch dpkg-source: info: applying fixeFreetypePreload.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20937648 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20937648 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20937648 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bcbio dpkg-buildpackage: info: source version 1.2.5-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from bcbio-1.2.5/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/debian/.debhelper/generated/_source/home pybuild --clean --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/<>/.pybuild/cpython3_3.9_bcbio/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -f bcbio/pipeline/version.py rm -f debian/*.1 rm -rf .pytest_cache rm -f tests/data/110106_FC70BUKAAXX/1_110106_FC70BUKAAXX_1_fastq.txt rm -f tests/data/110106_FC70BUKAAXX/1_110106_FC70BUKAAXX_2_fastq.txt rm -f tests/data/110106_FC70BUKAAXX/2_110106_FC70BUKAAXX_1_fastq.txt rm -f tests/data/110106_FC70BUKAAXX/2_110106_FC70BUKAAXX_2_fastq.txt rm -f tests/data/110106_FC70BUKAAXX/3_110106_FC70BUKAAXX_fastq.txt make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-bcbio.substvars debian/bcbio.substvars debian/files rm -fr -- debian/python3-bcbio/ debian/tmp/ debian/bcbio/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild install -d /<>/debian/.debhelper/generated/_source/home pybuild --configure --test-pytest -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build pybuild --build --test-pytest -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio copying bcbio/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio copying bcbio/install.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio copying bcbio/utils.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio copying bcbio/setpath.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity copying bcbio/heterogeneity/phylowgs.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity copying bcbio/heterogeneity/chromhacks.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity copying bcbio/heterogeneity/loh.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity copying bcbio/heterogeneity/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity copying bcbio/heterogeneity/bubbletree.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity copying bcbio/heterogeneity/theta.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/prioritize.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/mutect.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/varscan.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/qsnp.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/joint.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/octopus.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/normalize.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/samtools.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/damage.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/split.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/pisces.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/multi.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/gatkfilter.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/realign.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/platypus.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/gatkjoint.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/mutect2.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/ensemble.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/effects.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/sentieon.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/ploidy.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/validate.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/freebayes.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/peddy.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/germline.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/scalpel.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/population.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/naming.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/gatk.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/bedutils.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/annotation.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/genotype.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/strelka2.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/vardict.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/validateplot.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/coverage.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/vfilter.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/bamprep.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/recalibrate.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/vcfutils.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/deepvariant.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/cortex.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/vcfanno.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation copying bcbio/variation/smcounter2.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server copying bcbio/server/run.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server copying bcbio/server/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server copying bcbio/server/background.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server copying bcbio/server/main.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq copying bcbio/wgbsseq/deduplication.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq copying bcbio/wgbsseq/align.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq copying bcbio/wgbsseq/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq copying bcbio/wgbsseq/trimming.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq copying bcbio/wgbsseq/kits.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq copying bcbio/wgbsseq/cpg_caller.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/picard copying bcbio/picard/metrics.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/picard copying bcbio/picard/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/picard copying bcbio/picard/utils.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/picard creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/contamination.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/atac.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/kraken.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/samtools.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/damage.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/chipseq.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/srna.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/picard.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/preseq.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/multiqc.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/qualimap.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/viral.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/coverage.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/umi.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/fastqc.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/qsignature.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/atropos.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc copying bcbio/qc/variant.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/genome.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/cleanbam.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/archive.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/version.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/config_utils.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/sra.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/variation.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/sample.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/tools.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/alignment.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/qcsummary.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/datadict.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/fastq.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/region.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/run_info.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/rnaseq.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/main.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/shared.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline copying bcbio/pipeline/merge.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/broad copying bcbio/broad/metrics.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/broad copying bcbio/broad/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/broad copying bcbio/broad/picardrun.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/broad creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq copying bcbio/chipseq/macs2.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq copying bcbio/chipseq/atac.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq copying bcbio/chipseq/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq copying bcbio/chipseq/antibodies.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq copying bcbio/chipseq/peaks.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/prun.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/clusterk.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/multitasks.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/split.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/multi.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/resources.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/objectstore.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/clargs.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/runfn.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/ipython.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/ipythontasks.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed copying bcbio/distributed/transaction.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/bcbiornaseq.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/singlecellexperiment.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/stringtie.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/cpat.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/pizzly.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/arriba.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/oncofuse.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/variation.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/count.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/featureCounts.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/ericscript.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/sailfish.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/rapmap.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/cufflinks.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/rsem.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/annotate_gtf.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/qc.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/express.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/salmon.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/dexseq.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/umi.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/gtf.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/spikein.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq copying bcbio/rnaseq/kallisto.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/counts.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/readstats.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/ref.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/trim.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/cram.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/fastq.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/callable.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/fasta.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/skewer.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam copying bcbio/bam/coverage.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/rtg.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/bowtie2.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/snap.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/alignprep.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/bwa.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/novoalign.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/bismark.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/postalign.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/star.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/minimap2.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/bsmap.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/bowtie.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/tophat.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/bbmap.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/hisat2.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign copying bcbio/ngsalign/mosaik.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/workflow.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/create.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/inspect.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/tool.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/cwlutils.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/defs.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/main.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl copying bcbio/cwl/hpc.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow copying bcbio/workflow/template.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow copying bcbio/workflow/xprize.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow copying bcbio/workflow/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow copying bcbio/workflow/stormseq.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload copying bcbio/upload/s3.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload copying bcbio/upload/galaxy.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload copying bcbio/upload/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload copying bcbio/upload/irods.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload copying bcbio/upload/filesystem.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload copying bcbio/upload/shared.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/log copying bcbio/log/logbook_zmqpush.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/log copying bcbio/log/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/log creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hmmer copying bcbio/hmmer/search.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hmmer copying bcbio/hmmer/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hmmer creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/dragen copying bcbio/dragen/dragen.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/dragen copying bcbio/dragen/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/dragen creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/graph copying bcbio/graph/graph.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/graph copying bcbio/graph/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/graph copying bcbio/graph/collectl.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/graph creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna copying bcbio/srna/group.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna copying bcbio/srna/sample.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna copying bcbio/srna/umis.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna copying bcbio/srna/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna copying bcbio/srna/qc.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna copying bcbio/srna/mirdeep.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna copying bcbio/srna/mirge.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance copying bcbio/provenance/versioncheck.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance copying bcbio/provenance/system.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance copying bcbio/provenance/data.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance copying bcbio/provenance/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance copying bcbio/provenance/profile.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance copying bcbio/provenance/programs.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance copying bcbio/provenance/diagnostics.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance copying bcbio/provenance/do.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/prioritize.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/metasv.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/scramble.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/gridss.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/purecn.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/manta.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/cn_mops.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/plot.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/titancna.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/regions.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/delly.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/battenberg.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/purple.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/gatkcnv.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/validate.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/wham.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/hydra.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/seq2c.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/pindel.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/annotate.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/cnvkit.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/convert.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/lumpy.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural copying bcbio/structural/shared.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla copying bcbio/hla/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla copying bcbio/hla/groups.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla copying bcbio/hla/optitype.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla copying bcbio/hla/bwakit.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy copying bcbio/galaxy/api.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy copying bcbio/galaxy/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy copying bcbio/galaxy/nglims.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy copying bcbio/galaxy/loc.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bed copying bcbio/bed/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bed creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina copying bcbio/illumina/demultiplex.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina copying bcbio/illumina/transfer.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina copying bcbio/illumina/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina copying bcbio/illumina/samplesheet.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina copying bcbio/illumina/machine.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina copying bcbio/illumina/flowcell.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/disambiguate copying bcbio/pipeline/disambiguate/run.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/disambiguate copying bcbio/pipeline/disambiguate/__init__.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/disambiguate running egg_info creating bcbio_nextgen.egg-info writing bcbio_nextgen.egg-info/PKG-INFO writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt writing top-level names to bcbio_nextgen.egg-info/top_level.txt writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'config/*.ini' writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/10x_v2-cb1.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/10x_v2-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/dropseq-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v2-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-indrop-v3-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-scrb-cb1.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/harvard-scrb-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/icell8-cb1.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/icell8-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/qiagen_smallRNA_umi-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/qiaseq-upx-384-cb1.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/qiaseq-upx-384-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/qiaseq-upx-96-cb1.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/qiaseq-upx-96-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/surecell-cb1.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/surecell-cb2.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/surecell-cb3.txt.gz -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis copying bcbio/data/umis/surecell-transform.json -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/scripts creating /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/scripts/R copying bcbio/scripts/R/bcbio2se.R -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/scripts/R copying bcbio/scripts/R/se2qc.Rmd -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/scripts/R running build_scripts creating build creating build/scripts-3.9 copying and adjusting scripts/bcbio_nextgen.py -> build/scripts-3.9 copying and adjusting scripts/bcbio_setup_genome.py -> build/scripts-3.9 copying and adjusting scripts/bcbio_prepare_samples.py -> build/scripts-3.9 copying and adjusting scripts/bcbio_fastq_umi_prep.py -> build/scripts-3.9 copying and adjusting scripts/cwltool2wdl.py -> build/scripts-3.9 changing mode of build/scripts-3.9/bcbio_nextgen.py from 644 to 755 changing mode of build/scripts-3.9/bcbio_setup_genome.py from 644 to 755 changing mode of build/scripts-3.9/bcbio_prepare_samples.py from 644 to 755 changing mode of build/scripts-3.9/bcbio_fastq_umi_prep.py from 644 to 755 changing mode of build/scripts-3.9/cwltool2wdl.py from 644 to 755 # gave error for version 1.2.3 #PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -bhtml docs build/html # HTML generator #PYTHONPATH=. http_proxy='127.0.0.1:9' sphinx-build -N -bman docs build/man # Manpage generator mkdir -p build/html mkdir -p build/man && touch build/man/bcbio_nextgen.1 make[1]: Leaving directory '/<>' dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.9 rm -fr -- /tmp/dh-xdg-rundir-dF4RdSRz create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-bcbio.substvars debian/bcbio.substvars rm -fr -- debian/.debhelper/generated/python3-bcbio/ debian/python3-bcbio/ debian/tmp/ debian/.debhelper/generated/bcbio/ debian/bcbio/ rm -f debian/bcbio.debhelper.log debian/python3-bcbio.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install install -d /<>/debian/tmp pybuild --install --test-pytest -i python{version} -p 3.9 --dest-dir /<>/debian/tmp I: pybuild base:232: /usr/bin/python3 setup.py install --root /<>/debian/python3-bcbio running install running build running build_py copying bcbio/pipeline/version.py -> /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline running egg_info writing bcbio_nextgen.egg-info/PKG-INFO writing dependency_links to bcbio_nextgen.egg-info/dependency_links.txt writing top-level names to bcbio_nextgen.egg-info/top_level.txt reading manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'config/*.ini' writing manifest file 'bcbio_nextgen.egg-info/SOURCES.txt' running build_scripts running install_lib creating /<>/debian/python3-bcbio creating /<>/debian/python3-bcbio/usr creating /<>/debian/python3-bcbio/usr/lib creating /<>/debian/python3-bcbio/usr/lib/python3.9 creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity/phylowgs.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity/chromhacks.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity/loh.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity/bubbletree.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/heterogeneity/theta.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/prioritize.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/mutect.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/varscan.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/qsnp.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/joint.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/octopus.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/normalize.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/samtools.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/damage.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/split.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/pisces.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/multi.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/gatkfilter.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/realign.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/platypus.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/gatkjoint.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/mutect2.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/ensemble.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/effects.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/sentieon.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/ploidy.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/validate.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/freebayes.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/peddy.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/germline.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/scalpel.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/population.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/naming.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/gatk.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/bedutils.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/annotation.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/genotype.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/strelka2.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/vardict.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/validateplot.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/coverage.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/vfilter.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/bamprep.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/recalibrate.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/vcfutils.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/deepvariant.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/cortex.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/vcfanno.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/variation/smcounter2.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server/run.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server/background.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/server/main.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/scripts creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/scripts/R copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/scripts/R/se2qc.Rmd -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/scripts/R copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/scripts/R/bcbio2se.R -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/scripts/R creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq/deduplication.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq/align.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq/trimming.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq/kits.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/wgbsseq/cpg_caller.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/picard copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/picard/metrics.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/picard copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/picard/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/picard copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/picard/utils.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/picard creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/contamination.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/atac.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/kraken.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/samtools.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/damage.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/chipseq.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/srna.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/picard.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/preseq.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/multiqc.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/qualimap.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/viral.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/coverage.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/umi.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/fastqc.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/qsignature.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/atropos.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/qc/variant.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/genome.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/cleanbam.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/archive.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/version.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/config_utils.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/sra.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/variation.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/sample.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/tools.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/alignment.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/qcsummary.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/datadict.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/fastq.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/region.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/disambiguate copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/disambiguate/run.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/disambiguate copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/disambiguate/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/disambiguate copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/run_info.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/rnaseq.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/main.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/shared.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/pipeline/merge.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/broad copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/broad/metrics.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/broad copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/broad/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/broad copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/broad/picardrun.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/broad creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq/macs2.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq/atac.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq/antibodies.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/chipseq/peaks.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/prun.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/clusterk.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/multitasks.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/split.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/multi.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/resources.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/objectstore.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/clargs.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/runfn.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/ipython.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/ipythontasks.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/distributed/transaction.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/bcbiornaseq.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/singlecellexperiment.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/stringtie.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/cpat.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/pizzly.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/arriba.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/oncofuse.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/variation.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/count.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/featureCounts.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/ericscript.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/sailfish.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/rapmap.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/cufflinks.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/rsem.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/annotate_gtf.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/qc.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/express.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/salmon.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/dexseq.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/umi.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/gtf.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/spikein.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/rnaseq/kallisto.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/counts.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/readstats.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/ref.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/trim.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/cram.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/fastq.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/callable.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/fasta.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/skewer.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bam/coverage.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/install.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/utils.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/rtg.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/bowtie2.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/snap.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/alignprep.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/bwa.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/novoalign.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/bismark.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/postalign.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/star.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/minimap2.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/bsmap.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/bowtie.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/tophat.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/bbmap.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/hisat2.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/ngsalign/mosaik.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/workflow.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/create.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/inspect.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/tool.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/cwlutils.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/defs.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/main.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/cwl/hpc.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow/template.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow/xprize.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/workflow/stormseq.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/setpath.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload/s3.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload/galaxy.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload/irods.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload/filesystem.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/upload/shared.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-indrop-v2-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/icell8-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-scrb-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/qiaseq-upx-96-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/qiagen_smallRNA_umi-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/surecell-cb3.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/surecell-cb1.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/surecell-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/qiaseq-upx-384-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/surecell-cb2.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/dropseq-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/icell8-cb1.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/qiaseq-upx-96-cb1.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-scrb-cb1.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/qiaseq-upx-384-cb1.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-indrop-v3-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/10x_v2-transform.json -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/10x_v2-cb1.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/data/umis creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/log copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/log/logbook_zmqpush.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/log copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/log/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/log creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hmmer copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hmmer/search.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hmmer copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hmmer/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hmmer creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/dragen copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/dragen/dragen.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/dragen copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/dragen/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/dragen creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/graph copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/graph/graph.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/graph copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/graph/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/graph copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/graph/collectl.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/graph creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna/group.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna/sample.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna/umis.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna/qc.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna/mirdeep.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/srna/mirge.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance/versioncheck.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance/system.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance/data.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance/profile.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance/programs.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance/diagnostics.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/provenance/do.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/prioritize.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/metasv.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/scramble.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/gridss.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/purecn.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/manta.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/cn_mops.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/plot.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/titancna.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/regions.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/delly.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/battenberg.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/purple.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/gatkcnv.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/validate.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/wham.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/hydra.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/seq2c.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/pindel.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/annotate.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/cnvkit.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/convert.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/lumpy.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/structural/shared.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla/groups.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla/optitype.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/hla/bwakit.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy/api.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy/nglims.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/galaxy/loc.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bed copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/bed/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bed creating /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina/demultiplex.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina/transfer.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina/__init__.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina/samplesheet.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina/machine.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina copying /<>/.pybuild/cpython3_3.9_bcbio/build/bcbio/illumina/flowcell.py -> /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity/phylowgs.py to phylowgs.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity/chromhacks.py to chromhacks.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity/loh.py to loh.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity/bubbletree.py to bubbletree.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/heterogeneity/theta.py to theta.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/prioritize.py to prioritize.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/mutect.py to mutect.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/varscan.py to varscan.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/qsnp.py to qsnp.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/joint.py to joint.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/octopus.py to octopus.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/normalize.py to normalize.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/samtools.py to samtools.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/damage.py to damage.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/split.py to split.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/pisces.py to pisces.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/multi.py to multi.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/gatkfilter.py to gatkfilter.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/realign.py to realign.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/platypus.py to platypus.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/gatkjoint.py to gatkjoint.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/mutect2.py to mutect2.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/ensemble.py to ensemble.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/effects.py to effects.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/sentieon.py to sentieon.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/ploidy.py to ploidy.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/validate.py to validate.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/freebayes.py to freebayes.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/peddy.py to peddy.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/germline.py to germline.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/scalpel.py to scalpel.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/population.py to population.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/naming.py to naming.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/gatk.py to gatk.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/bedutils.py to bedutils.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/annotation.py to annotation.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/genotype.py to genotype.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/strelka2.py to strelka2.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/vardict.py to vardict.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/validateplot.py to validateplot.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/coverage.py to coverage.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/vfilter.py to vfilter.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/bamprep.py to bamprep.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/recalibrate.py to recalibrate.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/vcfutils.py to vcfutils.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/deepvariant.py to deepvariant.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/cortex.py to cortex.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/vcfanno.py to vcfanno.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/variation/smcounter2.py to smcounter2.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server/run.py to run.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server/background.py to background.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/server/main.py to main.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq/deduplication.py to deduplication.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq/align.py to align.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq/trimming.py to trimming.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq/kits.py to kits.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/wgbsseq/cpg_caller.py to cpg_caller.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/picard/metrics.py to metrics.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/picard/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/picard/utils.py to utils.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/contamination.py to contamination.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/atac.py to atac.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/kraken.py to kraken.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/samtools.py to samtools.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/damage.py to damage.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/chipseq.py to chipseq.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/srna.py to srna.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/picard.py to picard.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/preseq.py to preseq.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/multiqc.py to multiqc.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/qualimap.py to qualimap.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/viral.py to viral.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/coverage.py to coverage.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/umi.py to umi.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/fastqc.py to fastqc.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/qsignature.py to qsignature.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/atropos.py to atropos.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/qc/variant.py to variant.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/genome.py to genome.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/cleanbam.py to cleanbam.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/archive.py to archive.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/version.py to version.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/config_utils.py to config_utils.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/sra.py to sra.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/variation.py to variation.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/sample.py to sample.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/tools.py to tools.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/alignment.py to alignment.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/qcsummary.py to qcsummary.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/datadict.py to datadict.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/fastq.py to fastq.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/region.py to region.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/disambiguate/run.py to run.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/disambiguate/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/run_info.py to run_info.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/rnaseq.py to rnaseq.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/main.py to main.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/shared.py to shared.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/pipeline/merge.py to merge.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/broad/metrics.py to metrics.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/broad/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/broad/picardrun.py to picardrun.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq/macs2.py to macs2.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq/atac.py to atac.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq/antibodies.py to antibodies.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/chipseq/peaks.py to peaks.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/prun.py to prun.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/clusterk.py to clusterk.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/multitasks.py to multitasks.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/split.py to split.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/multi.py to multi.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/resources.py to resources.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/objectstore.py to objectstore.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/clargs.py to clargs.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/runfn.py to runfn.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/ipython.py to ipython.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/ipythontasks.py to ipythontasks.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/distributed/transaction.py to transaction.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/bcbiornaseq.py to bcbiornaseq.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/singlecellexperiment.py to singlecellexperiment.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/stringtie.py to stringtie.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/cpat.py to cpat.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/pizzly.py to pizzly.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/arriba.py to arriba.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/oncofuse.py to oncofuse.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/variation.py to variation.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/count.py to count.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/featureCounts.py to featureCounts.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/ericscript.py to ericscript.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/sailfish.py to sailfish.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/rapmap.py to rapmap.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/cufflinks.py to cufflinks.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/rsem.py to rsem.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/annotate_gtf.py to annotate_gtf.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/qc.py to qc.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/express.py to express.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/salmon.py to salmon.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/dexseq.py to dexseq.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/umi.py to umi.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/gtf.py to gtf.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/spikein.py to spikein.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/rnaseq/kallisto.py to kallisto.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/counts.py to counts.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/readstats.py to readstats.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/ref.py to ref.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/trim.py to trim.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/cram.py to cram.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/fastq.py to fastq.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/callable.py to callable.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/fasta.py to fasta.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/skewer.py to skewer.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bam/coverage.py to coverage.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/install.py to install.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/utils.py to utils.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/rtg.py to rtg.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/bowtie2.py to bowtie2.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/snap.py to snap.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/alignprep.py to alignprep.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/bwa.py to bwa.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/novoalign.py to novoalign.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/bismark.py to bismark.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/postalign.py to postalign.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/star.py to star.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/minimap2.py to minimap2.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/bsmap.py to bsmap.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/bowtie.py to bowtie.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/tophat.py to tophat.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/bbmap.py to bbmap.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/hisat2.py to hisat2.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/ngsalign/mosaik.py to mosaik.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/workflow.py to workflow.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/create.py to create.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/inspect.py to inspect.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/tool.py to tool.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/cwlutils.py to cwlutils.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/defs.py to defs.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/main.py to main.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/cwl/hpc.py to hpc.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow/template.py to template.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow/xprize.py to xprize.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/workflow/stormseq.py to stormseq.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/setpath.py to setpath.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload/s3.py to s3.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload/galaxy.py to galaxy.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload/irods.py to irods.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload/filesystem.py to filesystem.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/upload/shared.py to shared.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/log/logbook_zmqpush.py to logbook_zmqpush.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/log/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hmmer/search.py to search.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hmmer/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/dragen/dragen.py to dragen.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/dragen/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/graph/graph.py to graph.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/graph/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/graph/collectl.py to collectl.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna/group.py to group.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna/sample.py to sample.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna/umis.py to umis.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna/qc.py to qc.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna/mirdeep.py to mirdeep.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/srna/mirge.py to mirge.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance/versioncheck.py to versioncheck.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance/system.py to system.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance/data.py to data.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance/profile.py to profile.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance/programs.py to programs.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance/diagnostics.py to diagnostics.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/provenance/do.py to do.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/prioritize.py to prioritize.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/metasv.py to metasv.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/scramble.py to scramble.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/gridss.py to gridss.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/purecn.py to purecn.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/manta.py to manta.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/cn_mops.py to cn_mops.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/plot.py to plot.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/titancna.py to titancna.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/regions.py to regions.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/delly.py to delly.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/battenberg.py to battenberg.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/purple.py to purple.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/gatkcnv.py to gatkcnv.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/validate.py to validate.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/wham.py to wham.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/hydra.py to hydra.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/seq2c.py to seq2c.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/pindel.py to pindel.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/annotate.py to annotate.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/cnvkit.py to cnvkit.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/convert.py to convert.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/lumpy.py to lumpy.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/structural/shared.py to shared.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla/groups.py to groups.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla/optitype.py to optitype.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/hla/bwakit.py to bwakit.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy/api.py to api.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy/nglims.py to nglims.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/galaxy/loc.py to loc.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/bed/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina/demultiplex.py to demultiplex.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina/transfer.py to transfer.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina/__init__.py to __init__.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina/samplesheet.py to samplesheet.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina/machine.py to machine.cpython-39.pyc byte-compiling /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio/illumina/flowcell.py to flowcell.cpython-39.pyc running install_egg_info Copying bcbio_nextgen.egg-info to /<>/debian/python3-bcbio/usr/lib/python3.9/dist-packages/bcbio_nextgen-1.2.5.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-bcbio/usr/bin copying build/scripts-3.9/bcbio_nextgen.py -> /<>/debian/python3-bcbio/usr/bin copying build/scripts-3.9/bcbio_prepare_samples.py -> /<>/debian/python3-bcbio/usr/bin copying build/scripts-3.9/bcbio_fastq_umi_prep.py -> /<>/debian/python3-bcbio/usr/bin copying build/scripts-3.9/bcbio_setup_genome.py -> /<>/debian/python3-bcbio/usr/bin copying build/scripts-3.9/cwltool2wdl.py -> /<>/debian/python3-bcbio/usr/bin changing mode of /<>/debian/python3-bcbio/usr/bin/bcbio_nextgen.py to 755 changing mode of /<>/debian/python3-bcbio/usr/bin/bcbio_prepare_samples.py to 755 changing mode of /<>/debian/python3-bcbio/usr/bin/bcbio_fastq_umi_prep.py to 755 changing mode of /<>/debian/python3-bcbio/usr/bin/bcbio_setup_genome.py to 755 changing mode of /<>/debian/python3-bcbio/usr/bin/cwltool2wdl.py to 755 [ -d debian/bcbio/usr/bin ] || mkdir -p debian/bcbio/usr/bin mv debian/python3-bcbio/usr/bin/* debian/bcbio/usr/bin/ # To keep awareness of redundant binaries with different versions of Python #mkdir -p debian/bcbio/usr/bin #rm -rf debian/python-bcbio/usr/bin debian/python3-bcbio/usr/bin find /<>/debian/bcbio/usr/share/bcbio/config/ -name "*.sh" | xargs -r chmod +x find: ‘/<>/debian/bcbio/usr/share/bcbio/config/’: No such file or directory make[1]: Leaving directory '/<>' dh_install -O--buildsystem=pybuild install -d debian/.debhelper/generated/python3-bcbio install -d debian/bcbio/usr/share/bcbio cp --reflink=auto -a ./config debian/bcbio/usr/share/bcbio/ install -d debian/.debhelper/generated/bcbio dh_installdocs -O--buildsystem=pybuild install -d debian/python3-bcbio/usr/share/doc/python3-bcbio install -p -m0644 debian/README.Debian debian/python3-bcbio/usr/share/doc/python3-bcbio/README.Debian install -p -m0644 debian/TODO debian/python3-bcbio/usr/share/doc/python3-bcbio/TODO.Debian install -p -m0644 debian/copyright debian/python3-bcbio/usr/share/doc/python3-bcbio/copyright install -d debian/bcbio/usr/share/doc/bcbio install -p -m0644 debian/copyright debian/bcbio/usr/share/doc/bcbio/copyright dh_sphinxdoc -O--buildsystem=pybuild dh_sphinxdoc: warning: Sphinx documentation not found dh_installchangelogs -O--buildsystem=pybuild install -p -m0644 debian/changelog debian/bcbio/usr/share/doc/bcbio/changelog.Debian install -p -m0644 debian/changelog debian/python3-bcbio/usr/share/doc/python3-bcbio/changelog.Debian dh_installman -O--buildsystem=pybuild install -d debian/bcbio/usr/share/man/man1/ install -p -m0644 ./build/man/bcbio_nextgen.1 debian/bcbio/usr/share/man/man1/bcbio_nextgen.1 man-recode --to-code UTF-8 --suffix .dh-new debian/bcbio/usr/share/man/man1/bcbio_nextgen.1 mv debian/bcbio/usr/share/man/man1/bcbio_nextgen.1.dh-new debian/bcbio/usr/share/man/man1/bcbio_nextgen.1 chmod 0644 -- debian/bcbio/usr/share/man/man1/bcbio_nextgen.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:161: version: 4.20201102ubuntu4 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--buildsystem=pybuild'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:152: source=bcbio, binary packages=['python3-bcbio', 'bcbio'] D: dh_python3 dh_python3:183: processing package python3-bcbio... D: dh_python3 fs:49: moving files from debian/python3-bcbio/usr/lib/python3.9/dist-packages to debian/python3-bcbio/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-bcbio details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-bcbio D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package bcbio... D: dh_python3 fs:260: package bcbio details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3 -s, /usr/bin/python3 -Es, /usr/bin/python3, /usr/bin/python3, /usr/bin/python3 -Es}, 'public_vers': set(), 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package bcbio D: dh_python3 depends:275: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -d debian/bcbio/usr/share/lintian/overrides install -p -m0644 debian/bcbio.lintian-overrides debian/bcbio/usr/share/lintian/overrides/bcbio dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild Using 1611665723 as canonical time Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/icell8-cb1.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/qiaseq-upx-96-cb1.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/surecell-cb3.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/surecell-cb1.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/surecell-cb2.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/harvard-scrb-cb1.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/qiaseq-upx-384-cb1.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-bcbio/usr/lib/python3/dist-packages/bcbio/data/umis/10x_v2-cb1.txt.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-bcbio cd debian/bcbio chmod a-x usr/share/doc/bcbio/changelog.Debian usr/share/man/man1/bcbio_nextgen.1 chmod a-x usr/share/doc/python3-bcbio/TODO.Debian usr/share/doc/python3-bcbio/changelog.Debian gzip -9nf usr/share/doc/bcbio/changelog.Debian usr/share/man/man1/bcbio_nextgen.1 gzip -9nf usr/share/doc/python3-bcbio/TODO.Debian usr/share/doc/python3-bcbio/changelog.Debian cd '/<>' cd '/<>' dh_fixperms -O--buildsystem=pybuild find debian/python3-bcbio ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/bcbio ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/bcbio/usr/share/doc -type f -a -true -a ! -regex 'debian/bcbio/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-bcbio/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-bcbio/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-bcbio/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/bcbio/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/bcbio/usr/share/man debian/bcbio/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-bcbio -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bcbio -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-bcbio/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/bcbio/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -d debian/python3-bcbio/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-bcbio/DEBIAN/postinst cat debian/python3-bcbio.postinst.debhelper >> debian/python3-bcbio/DEBIAN/postinst chmod 0755 -- debian/python3-bcbio/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-bcbio/DEBIAN/prerm cat debian/python3-bcbio.prerm.debhelper >> debian/python3-bcbio/DEBIAN/prerm chmod 0755 -- debian/python3-bcbio/DEBIAN/prerm install -d debian/bcbio/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/bcbio/DEBIAN/postinst cat debian/bcbio.postinst.debhelper >> debian/bcbio/DEBIAN/postinst chmod 0755 -- debian/bcbio/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/bcbio/DEBIAN/prerm cat debian/bcbio.prerm.debhelper >> debian/bcbio/DEBIAN/prerm chmod 0755 -- debian/bcbio/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild echo misc:Depends= >> debian/python3-bcbio.substvars echo misc:Pre-Depends= >> debian/python3-bcbio.substvars dpkg-gencontrol -ppython3-bcbio -ldebian/changelog -Tdebian/python3-bcbio.substvars -Pdebian/python3-bcbio echo misc:Depends= >> debian/bcbio.substvars echo misc:Pre-Depends= >> debian/bcbio.substvars dpkg-gencontrol -pbcbio -ldebian/changelog -Tdebian/bcbio.substvars -Pdebian/bcbio chmod 0644 -- debian/python3-bcbio/DEBIAN/control chmod 0644 -- debian/bcbio/DEBIAN/control dh_md5sums -O--buildsystem=pybuild cd debian/bcbio >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-bcbio >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/bcbio/DEBIAN/md5sums chmod 0644 -- debian/python3-bcbio/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-bcbio .. dpkg-deb --root-owner-group --build debian/bcbio .. INFO: pkgstriptranslations version 147 INFO: pkgstriptranslations version 147 pkgstriptranslations: processing python3-bcbio (in debian/python3-bcbio); do_strip: , oemstrip: pkgstriptranslations: processing bcbio (in debian/bcbio); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-bcbio/DEBIAN/control, package python3-bcbio, directory debian/python3-bcbio pkgstripfiles: Truncating usr/share/doc/python3-bcbio/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/bcbio/DEBIAN/control, package bcbio, directory debian/bcbio pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-bcbio ... INFO: pkgstripfiles: waiting for lock (bcbio) ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-bcbio' in '../python3-bcbio_1.2.5-1_all.deb'. Searching for duplicated docs in dependency python3-bcbio... symlinking changelog.Debian.gz in bcbio to file in python3-bcbio pkgstripfiles: Running PNG optimization (using 4 cpus) for package bcbio ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bcbio' in '../bcbio_1.2.5-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../bcbio_1.2.5-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from bcbio-1.2.5/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-04-08T11:09:38Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bcbio_1.2.5-1_amd64.changes: ---------------------------- Format: 1.8 Date: Tue, 26 Jan 2021 13:55:23 +0100 Source: bcbio Binary: bcbio python3-bcbio Built-For-Profiles: noudeb Architecture: all Version: 1.2.5-1 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steffen Moeller Description: bcbio - toolkit for analysing high-throughput sequencing data python3-bcbio - library for analysing high-throughput sequencing data Changes: bcbio (1.2.5-1) unstable; urgency=medium . * New upstream version. Checksums-Sha1: 1d77b3454db967d78c90061d1164d8341ec3d811 39520 bcbio_1.2.5-1_all.deb 67575ac96496dfd2452ad43744c9c04aca60bbf2 26543 bcbio_1.2.5-1_amd64.buildinfo bd9249365dcce7ea7c9ff66ab109c67cf0fe136f 1228964 python3-bcbio_1.2.5-1_all.deb Checksums-Sha256: 91a935ff0af6748eff722605cdaf47c0bac6cbc458c52fcb628d0a58299b7ae7 39520 bcbio_1.2.5-1_all.deb aa1be132021be79178eaada236bb99216f0b73f865adc5e28802512b7381da82 26543 bcbio_1.2.5-1_amd64.buildinfo e1a2e2f7a18d49e87f06f26aa9ab8577b5624d8f9955c3e2395fa2a482f50c88 1228964 python3-bcbio_1.2.5-1_all.deb Files: e15f8e6c7daaa3f2ef377725a26ae1f1 39520 contrib/science optional bcbio_1.2.5-1_all.deb b061aa0c64459e745db64cf9ad25e266 26543 contrib/science optional bcbio_1.2.5-1_amd64.buildinfo d395bd6d45d0d3b2ff8d01bf2a20634a 1228964 contrib/python optional python3-bcbio_1.2.5-1_all.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: bcbio Binary: bcbio python3-bcbio Architecture: all Version: 1.2.5-1 Checksums-Md5: e15f8e6c7daaa3f2ef377725a26ae1f1 39520 bcbio_1.2.5-1_all.deb d395bd6d45d0d3b2ff8d01bf2a20634a 1228964 python3-bcbio_1.2.5-1_all.deb Checksums-Sha1: 1d77b3454db967d78c90061d1164d8341ec3d811 39520 bcbio_1.2.5-1_all.deb bd9249365dcce7ea7c9ff66ab109c67cf0fe136f 1228964 python3-bcbio_1.2.5-1_all.deb Checksums-Sha256: 91a935ff0af6748eff722605cdaf47c0bac6cbc458c52fcb628d0a58299b7ae7 39520 bcbio_1.2.5-1_all.deb e1a2e2f7a18d49e87f06f26aa9ab8577b5624d8f9955c3e2395fa2a482f50c88 1228964 python3-bcbio_1.2.5-1_all.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Thu, 08 Apr 2021 11:09:38 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: ant (= 1.10.9-3), ant-optional (= 1.10.9-3), atropos (= 1.1.29+dfsg-1), autoconf (= 2.69-14), automake (= 1:1.16.3-2ubuntu1), autopoint (= 0.21-3ubuntu2), autotools-dev (= 20180224.1+nmu1), bamkit (= 0.0.1+git20170413.ccd079d-2), base-files (= 11ubuntu18), base-passwd (= 3.5.49), bash (= 5.1-2ubuntu1), bcftools (= 1.11-1), bedtools (= 2.30.0+dfsg-1), binutils (= 2.36.1-6ubuntu1), binutils-common (= 2.36.1-6ubuntu1), binutils-x86-64-linux-gnu (= 2.36.1-6ubuntu1), biobambam2 (= 2.0.179+ds-1), bowtie2 (= 2.4.2-2), bsdextrautils (= 2.36.1-7ubuntu2), bsdutils (= 1:2.36.1-7ubuntu2), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu3), ca-certificates (= 20210119build1), ca-certificates-java (= 20190909), cnvkit (= 0.9.8-1), coreutils (= 8.32-4ubuntu2), cpp (= 4:10.2.0-1ubuntu1), cpp-10 (= 10.2.1-24ubuntu1), cython3 (= 0.29.21-1ubuntu3), dash (= 0.5.11+git20200708+dd9ef66+really0.5.11+git20200708+dd9ef66-5ubuntu1), debconf (= 1.5.74), debhelper (= 13.3.4ubuntu1), debianutils (= 4.11.2), debugedit (= 1:0.1-0ubuntu2), default-jre (= 2:1.11-72), default-jre-headless (= 2:1.11-72), dh-autoreconf (= 20), dh-python (= 4.20201102ubuntu4), dh-strip-nondeterminism (= 1.11.0-1), diffutils (= 1:3.7-3ubuntu1), docutils-common (= 0.16+dfsg-3), dpkg (= 1.20.7.1ubuntu4), dpkg-dev (= 1.20.7.1ubuntu4), dwz (= 0.14-1), fastqc (= 0.11.9+dfsg-4), file (= 1:5.39-3), findutils (= 4.8.0-1ubuntu1), fontconfig (= 2.13.1-4.2ubuntu3), fontconfig-config (= 2.13.1-4.2ubuntu3), fonts-font-awesome (= 5.0.10+really4.7.0~dfsg-4), fonts-glyphicons-halflings (= 1.009~3.4.1+dfsg-2), fonts-lato (= 2.0-2.1), fonts-lyx (= 2.3.6-1), fonts-mathjax (= 2.7.9+dfsg-1), freebayes (= 1.3.5-1), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.1-24ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.1-24ubuntu1), gcc-10-base (= 10.2.1-24ubuntu1), gcc-11-base (= 11-20210404-1ubuntu1), gettext (= 0.21-3ubuntu2), gettext-base (= 0.21-3ubuntu2), gffread (= 0.12.1-4), gpg (= 2.2.20-1ubuntu3), gpgconf (= 2.2.20-1ubuntu3), grabix (= 0.1.7-2build1), grep (= 3.6-1), groff-base (= 1.22.4-6), gsort (= 0.1.4-3), gzip (= 1.10-2ubuntu3), hisat2 (= 2.2.1-2), hostname (= 3.23), hts-nim-tools (= 0.2.1-1), init-system-helpers (= 1.60), intltool-debian (= 0.35.0+20060710.5), java-common (= 0.72), libacl1 (= 2.2.53-10ubuntu1), libactivation-java (= 1.2.0-2), libaec0 (= 1.0.4-1), libaopalliance-java (= 20070526-6), libapache-pom-java (= 18-1), libarchive-zip-perl (= 1.68-1), libargs4j-java (= 2.33-1.1), libasan6 (= 11-20210404-1ubuntu1), libasn1-8-heimdal (= 7.7.0+dfsg-2), libasound2 (= 1.2.4-1.1ubuntu2), libasound2-data (= 1.2.4-1.1ubuntu2), libassuan0 (= 2.5.4-1ubuntu1), libatinject-jsr330-api-java (= 1.0+ds1-5), libatomic1 (= 11-20210404-1ubuntu1), libattr1 (= 1:2.4.48-6build1), libaudit-common (= 1:3.0-2ubuntu1), libaudit1 (= 1:3.0-2ubuntu1), libavahi-client3 (= 0.8-5ubuntu2), libavahi-common-data (= 0.8-5ubuntu2), libavahi-common3 (= 0.8-5ubuntu2), libbamtools2.5.1 (= 2.5.1+dfsg-8), libbarclay-java (= 2.1.0-3.1), libbinutils (= 2.36.1-6ubuntu1), libblas3 (= 3.9.0-3ubuntu2), libblkid1 (= 2.36.1-7ubuntu2), libblosc1 (= 1.20.1+ds1-2), libboost-dev (= 1.74.0.3ubuntu5), libboost-filesystem1.74.0 (= 1.74.0-8ubuntu2), libboost-iostreams1.74.0 (= 1.74.0-8ubuntu2), libboost-program-options1.74.0 (= 1.74.0-8ubuntu2), libboost1.74-dev (= 1.74.0-8ubuntu2), libbrotli1 (= 1.0.9-2build2), libbsd0 (= 0.11.3-1ubuntu2), libbz2-1.0 (= 1.0.8-4ubuntu3), libc-ares2 (= 1.17.1-1), libc-bin (= 2.33-0ubuntu5), libc-dev-bin (= 2.33-0ubuntu5), libc6 (= 2.33-0ubuntu5), libc6-dev (= 2.33-0ubuntu5), libcairo2 (= 1.16.0-5ubuntu1), libcap-ng0 (= 0.7.9-2.2build1), libcap2 (= 1:2.44-1build1), libcc1-0 (= 11-20210404-1ubuntu1), libcdi-api-java (= 1.2-3), libcmark-gfm-extensions0 (= 0.29.0.gfm.0-6), libcmark-gfm0 (= 0.29.0.gfm.0-6), libcodemodel-java (= 2.6+jaxb2.3.0.1-10), libcom-err2 (= 1.45.7-1ubuntu2), libcommons-cli-java (= 1.4-2), libcommons-codec-java (= 1.15-1), libcommons-compress-java (= 1.20-1), libcommons-io-java (= 2.8.0-1), libcommons-jexl2-java (= 2.1.1-5), libcommons-lang3-java (= 3.11-1), libcommons-logging-java (= 1.2-2), libcommons-math3-java (= 3.6.1-3), libcommons-parent-java (= 43-1), libcrypt-dev (= 1:4.4.17-1ubuntu3), libcrypt1 (= 1:4.4.17-1ubuntu3), libctf-nobfd0 (= 2.36.1-6ubuntu1), libctf0 (= 2.36.1-6ubuntu1), libcups2 (= 2.3.3op2-3ubuntu3), libcurl3-gnutls (= 7.74.0-1ubuntu2), libcurl4 (= 7.74.0-1ubuntu2), libdatrie1 (= 0.2.13-1ubuntu2), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu4), libdbus-1-3 (= 1.12.20-1ubuntu3), libdebconfclient0 (= 0.256ubuntu3), libdebhelper-perl (= 13.3.4ubuntu1), libdeflate0 (= 1.7-1ubuntu1), libdisorder0 (= 0.0.2+git20130809.8062ee1-2), libdivsufsort3 (= 2.0.1-5), libdom4j-java (= 2.1.3-1), libdpkg-perl (= 1.20.7.1ubuntu4), libdrm-amdgpu1 (= 2.4.104-1build1), libdrm-common (= 2.4.104-1build1), libdrm-intel1 (= 2.4.104-1build1), libdrm-nouveau2 (= 2.4.104-1build1), libdrm-radeon1 (= 2.4.104-1build1), libdrm2 (= 2.4.104-1build1), libdtd-parser-java (= 1.2-1), libdw1 (= 0.183-6), libedit2 (= 3.1-20191231-2), libelf1 (= 0.183-6), libexpat1 (= 2.2.10-2), libfastahack0 (= 1.0.0+dfsg-7), libfastinfoset-java (= 1.2.12-3), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu5), libfile-stripnondeterminism-perl (= 1.11.0-1), libfindbin-libs-perl (= 2.190.02-1), libfml0 (= 0.1+git20190320.b499514-1), libfontconfig1 (= 2.13.1-4.2ubuntu3), libfreemarker-java (= 2.3.23-11), libfreetype6 (= 2.10.4+dfsg-1build1), libfribidi0 (= 1.0.8-2ubuntu1), libgatk-native-bindings-java (= 1.0.0-2.1), libgcc-10-dev (= 10.2.1-24ubuntu1), libgcc-s1 (= 11-20210404-1ubuntu1), libgclib2 (= 0.11.10+ds-2), libgcrypt20 (= 1.8.7-2ubuntu2), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgeronimo-annotation-1.3-spec-java (= 1.3-1), libgeronimo-interceptor-3.0-spec-java (= 1.0.1-4fakesync), libgfortran5 (= 11-20210404-1ubuntu1), libgif7 (= 5.1.9-2), libgkl-java (= 0.8.7+dfsg-1), libgl1 (= 1.3.2-1), libgl1-mesa-dri (= 21.0.1-2), libglapi-mesa (= 21.0.1-2), libglib2.0-0 (= 2.68.0-1), libglvnd0 (= 1.3.2-1), libglx-mesa0 (= 21.0.1-2), libglx0 (= 1.3.2-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu2), libgnutls30 (= 3.7.0-5ubuntu1), libgomp1 (= 11-20210404-1ubuntu1), libgoogle-gson-java (= 2.8.6-1), libgpg-error0 (= 1.38-2build1), libgpgme11 (= 1.14.0-1ubuntu3), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.18.3-4), libgssapi3-heimdal (= 7.7.0+dfsg-2), libguava-java (= 29.0-6), libguice-java (= 4.2.3-2), libgzstream0 (= 1.5+dfsg-5), libharfbuzz0b (= 2.7.4-1ubuntu1), libhcrypto4-heimdal (= 7.7.0+dfsg-2), libhdf5-103-1 (= 1.10.6+repack-2), libheimbase1-heimdal (= 7.7.0+dfsg-2), libheimntlm0-heimdal (= 7.7.0+dfsg-2), libhogweed6 (= 3.7-2.1), libhts3 (= 1.11-4), libhtscodecs2 (= 0.5-3), libhtsjdk-java (= 2.23.0+dfsg-2), libhttpclient-java (= 4.5.13-1), libhttpcore-java (= 4.4.14-1), libhx509-5-heimdal (= 7.7.0+dfsg-2), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-6ubuntu2), libidn2-0 (= 2.3.0-5), libimagequant0 (= 2.12.2-1.1), libisl23 (= 0.23-1build1), libistack-commons-java (= 3.0.6-5), libitm1 (= 11-20210404-1ubuntu1), libjaxb-api-java (= 2.3.1-1), libjaxb-java (= 2.3.0.1-10), libjaxen-java (= 1.1.6-4), libjbig0 (= 2.1-3.1build1), libjbzip2-java (= 0.9.1-5), libjemalloc2 (= 5.2.1-2), libjoptsimple-java (= 5.0.4-4), libjpeg-turbo8 (= 2.0.6-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjs-bootstrap (= 3.4.1+dfsg-2), libjs-d3 (= 3.5.17-4), libjs-es5-shim (= 4.5.15-1), libjs-highlight.js (= 9.18.5+dfsg1-1), libjs-jquery (= 3.5.1+dfsg+~3.5.5-7), libjs-jquery-datatables (= 1.10.21+dfsg-1), libjs-jquery-metadata (= 12-3), libjs-jquery-selectize.js (= 0.12.6+dfsg-1.1), libjs-jquery-tablesorter (= 1:2.31.3+dfsg1-1), libjs-jquery-ui (= 1.12.1+dfsg-8), libjs-json (= 0~20190826+~1.0.5-2), libjs-mathjax (= 2.7.9+dfsg-1), libjs-microplugin.js (= 0.0.3+dfsg-1.1), libjs-modernizr (= 2.6.2+ds1-4), libjs-prettify (= 2015.12.04+dfsg-1.1), libjs-sifter.js (= 0.6.0+dfsg-1), libjs-sphinxdoc (= 3.5.3-1), libjs-twitter-bootstrap-datepicker (= 1.3.1+dfsg1-4.1), libjs-underscore (= 1.9.1~dfsg-1), libjsoncpp24 (= 1.9.4-4), libjsoup-java (= 1.10.2-2), libjsr305-java (= 0.1~+svn49-11), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-26-heimdal (= 7.7.0+dfsg-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), liblapack3 (= 3.9.0-3ubuntu2), liblbfgsb0 (= 3.0+dfsg.3-9), liblcms2-2 (= 2.12~rc1-2), libldap-2.4-2 (= 2.4.57+dfsg-2ubuntu1), liblightcouch-java (= 0.0.6-1.1), libllvm11 (= 1:11.0.1-2ubuntu2), liblog4j2-java (= 2.13.3-1), liblsan0 (= 11-20210404-1ubuntu1), liblz4-1 (= 1.9.3-1build1), liblzma5 (= 5.2.5-1.0build2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmaus2-2 (= 2.0.768+dfsg-1), libmaven-file-management-java (= 3.0.0-1), libmaven-parent-java (= 31-2), libmaven-resolver-java (= 1.4.2-3build1), libmaven-shared-io-java (= 3.0.0-3), libmaven-shared-utils-java (= 3.3.0-1), libmaven3-core-java (= 3.6.3-5), libmd0 (= 1.0.3-3build1), libmongodb-java (= 3.6.3-2), libmount1 (= 2.36.1-7ubuntu2), libmpc3 (= 1.2.0-1build1), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3build1), libncurses6 (= 6.2+20201114-2build1), libncursesw6 (= 6.2+20201114-2build1), libnettle8 (= 3.7-2.1), libnghttp2-14 (= 1.43.0-1), libngs-java (= 2.10.9-1), libngs-sdk-dev (= 2.10.9-1), libngs-sdk2 (= 2.10.9-1), libnode72 (= 12.21.0~dfsg-3ubuntu1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libnspr4 (= 2:4.29-1), libnss3 (= 2:3.63-1ubuntu1), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpango-1.0-0 (= 1.48.2-1build2), libpangocairo-1.0-0 (= 1.48.2-1build2), libpangoft2-1.0-0 (= 1.48.2-1build2), libpaper-utils (= 1.1.28), libpaper1 (= 1.1.28), libpciaccess0 (= 0.16-1build2), libpcre2-8-0 (= 10.36-2ubuntu5), libpcre3 (= 2:8.39-13build3), libpcsclite1 (= 1.9.1-1), libperl5.32 (= 5.32.1-3ubuntu2), libpicard-java (= 2.24.1+dfsg-1), libpipeline1 (= 1.5.3-1), libpixman-1-0 (= 0.40.0-1build2), libplexus-archiver-java (= 3.6.0-2), libplexus-cipher-java (= 1.8-2), libplexus-classworlds-java (= 2.6.0-1), libplexus-component-annotations-java (= 2.1.0-1), libplexus-interpolation-java (= 1.26-1), libplexus-io-java (= 3.2.0-1.1), libplexus-sec-dispatcher-java (= 1.4-4), libplexus-utils2-java (= 3.3.0-1), libpng16-16 (= 1.6.37-3build3), libprocps8 (= 2:3.3.16-5ubuntu3), libpsl5 (= 0.21.0-1.2), libpython3-stdlib (= 3.9.4-1), libpython3.9-minimal (= 3.9.4-1), libpython3.9-stdlib (= 3.9.4-1), libquadmath0 (= 11-20210404-1ubuntu1), libreadline8 (= 8.1-1), librelaxng-datatype-java (= 1.0+ds1-3.1), librngom-java (= 2.3.0.1-10), libroken18-heimdal (= 7.7.0+dfsg-2), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build2), libsasl2-2 (= 2.1.27+dfsg-2ubuntu1), libsasl2-modules-db (= 2.1.27+dfsg-2ubuntu1), libseccomp2 (= 2.5.1-1ubuntu1), libselinux1 (= 3.1-3build1), libsensors-config (= 1:3.6.0-7), libsensors5 (= 1:3.6.0-7), libseqlib2 (= 1.2.0+dfsg-4), libsigsegv2 (= 2.13-1ubuntu1), libsis-base-java (= 18.09~pre1+git20180928.45fbd31+dfsg-3), libsis-base-jni (= 18.09~pre1+git20180928.45fbd31+dfsg-3), libsis-jhdf5-java (= 19.04.0+dfsg-4), libsis-jhdf5-jni (= 19.04.0+dfsg-4), libsisu-inject-java (= 0.3.4-2), libsisu-plexus-java (= 0.3.4-3), libslf4j-java (= 1.7.30-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.36.1-7ubuntu2), libsmithwaterman0 (= 0.0+git20160702.2610e25-11), libsnappy-java (= 1.1.8.3-1), libsnappy-jni (= 1.1.8.3-1), libsnappy1v5 (= 1.1.8-1build1), libsqlite3-0 (= 3.34.1-3), libssh-4 (= 0.9.5-1), libssl1.1 (= 1.1.1j-1ubuntu3), libssw0 (= 1.1-13), libstaden-read14 (= 1.14.13-4), libstax-ex-java (= 1.7.8-3), libstdc++-10-dev (= 10.2.1-24ubuntu1), libstdc++6 (= 11-20210404-1ubuntu1), libstreambuffer-java (= 1.5.4-1.1), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-3ubuntu3), libsz2 (= 1.0.4-1), libtabixpp0 (= 1.1.0-4ubuntu1), libtasn1-6 (= 4.16.0-2), libtbb2 (= 2020.3-1), libtcl8.6 (= 8.6.11+dfsg-1), libthai-data (= 0.1.28-4), libthai0 (= 0.1.28-4), libtiff5 (= 4.2.0-1build1), libtinfo6 (= 6.2+20201114-2build1), libtirpc-common (= 1.3.1-1build1), libtirpc-dev (= 1.3.1-1build1), libtirpc3 (= 1.3.1-1build1), libtk8.6 (= 8.6.11-2), libtool (= 2.4.6-15), libtsan0 (= 11-20210404-1ubuntu1), libtxw2-java (= 2.3.0.1-10), libubsan1 (= 11-20210404-1ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-3ubuntu3), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7ubuntu2), libuv1 (= 1.40.0-1), libvcflib-tools (= 1.0.2+dfsg-2), libvcflib1 (= 1.0.2+dfsg-2), libvulkan1 (= 1.2.162.0-1), libwagon-http-java (= 3.3.4-1), libwagon-provider-api-java (= 3.3.4-1), libwebp6 (= 0.6.1-2), libwebpdemux2 (= 0.6.1-2), libwebpmux3 (= 0.6.1-2), libwind0-heimdal (= 7.7.0+dfsg-2), libx11-6 (= 2:1.7.0-2build2), libx11-data (= 2:1.7.0-2build2), libx11-xcb1 (= 2:1.7.0-2build2), libxau6 (= 1:1.0.9-1build3), libxcb-dri2-0 (= 1.14-3ubuntu1), libxcb-dri3-0 (= 1.14-3ubuntu1), libxcb-glx0 (= 1.14-3ubuntu1), libxcb-present0 (= 1.14-3ubuntu1), libxcb-render0 (= 1.14-3ubuntu1), libxcb-shm0 (= 1.14-3ubuntu1), libxcb-sync1 (= 1.14-3ubuntu1), libxcb-xfixes0 (= 1.14-3ubuntu1), libxcb1 (= 1.14-3ubuntu1), libxdmcp6 (= 1:1.1.3-0ubuntu3), libxext6 (= 2:1.3.4-0ubuntu3), libxfixes3 (= 1:5.0.3-2build1), libxft2 (= 2.3.3-0ubuntu3), libxi6 (= 2:1.7.10-1build2), libxml-commons-resolver1.1-java (= 1.2-11), libxml2 (= 2.9.10+dfsg-6.3build2), libxrender1 (= 1:0.9.10-1build2), libxshmfence1 (= 1.3-1build2), libxsom-java (= 2.3.0.1-10), libxss1 (= 1:1.2.3-1), libxt6 (= 1:1.2.0-1), libxtst6 (= 2:1.2.3-1build2), libxxf86vm1 (= 1:1.1.4-1build1), libxz-java (= 1.8-2), libyaml-0-2 (= 0.2.2-1), libzstd1 (= 1.4.8+dfsg-2build2), linux-libc-dev (= 5.11.0-13.14), littler (= 0.3.12-1), login (= 1:4.8.1-1ubuntu8), lsb-base (= 11.1.0ubuntu2), lto-disabled-list (= 6), lumpy-sv (= 0.3.1+dfsg-5), m4 (= 1.4.18-5), mailcap (= 3.68ubuntu1), make (= 4.3-4ubuntu1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), media-types (= 4.0.0), mime-support (= 3.66), mosdepth (= 0.3.1+ds-2), multiqc (= 1.9+dfsg-2), ncurses-base (= 6.2+20201114-2build1), ncurses-bin (= 6.2+20201114-2build1), nim (= 1.4.2-1), nim-hts-dev (= 0.3.14+ds-1), node-highlight.js (= 9.18.5+dfsg1-1), node-html5shiv (= 3.7.3+dfsg-3), node-normalize.css (= 8.0.1-3), nodejs (= 12.21.0~dfsg-3ubuntu1), openjdk-11-jre (= 11.0.11+8-0ubuntu2), openjdk-11-jre-headless (= 11.0.11+8-0ubuntu2), openssl (= 1.1.1j-1ubuntu3), pandoc (= 2.9.2.1-1ubuntu3), pandoc-data (= 2.9.2.1-1ubuntu3), patch (= 2.7.6-7), perl (= 5.32.1-3ubuntu2), perl-base (= 5.32.1-3ubuntu2), perl-modules-5.32 (= 5.32.1-3ubuntu2), picard-tools (= 2.24.1+dfsg-1), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.16-5ubuntu3), python-babel-localedata (= 2.8.0+dfsg.1-6), python-matplotlib-data (= 3.3.4-1), python3 (= 3.9.4-1), python3-alabaster (= 0.7.8-1.1), python3-all (= 3.9.4-1), python3-argcomplete (= 1.8.1-1.5), python3-argh (= 0.26.2-1.1), python3-attr (= 20.3.0-1), python3-babel (= 2.8.0+dfsg.1-6), python3-biopython (= 1.78+dfsg-4ubuntu1), python3-certifi (= 2020.6.20-1), python3-chardet (= 4.0.0-1), python3-click (= 7.1.2-1), python3-colorama (= 0.4.4-1), python3-coloredlogs (= 7.3-2), python3-colorlog (= 4.7.2-1), python3-colormath (= 3.0.0-1.1), python3-commonmark (= 0.9.1-3), python3-cycler (= 0.10.0-3), python3-cyvcf2 (= 0.30.4-4), python3-dateutil (= 2.8.1-5), python3-decorator (= 4.4.2-0ubuntu1), python3-distutils (= 3.9.4-0ubuntu1), python3-docutils (= 0.16+dfsg-3), python3-future (= 0.18.2-5), python3-geneimpacts (= 0.3.7-3), python3-gffutils (= 0.10.1-2), python3-humanfriendly (= 9.1-1), python3-idna (= 2.10-1), python3-imagesize (= 1.2.0-2), python3-importlib-metadata (= 1.6.0-2), python3-iniconfig (= 1.1.1-1), python3-jinja2 (= 2.11.2-1), python3-joblib (= 0.17.0-2), python3-kiwisolver (= 1.3.1-1build1), python3-lib2to3 (= 3.9.4-0ubuntu1), python3-logbook (= 1.5.3-4build1), python3-lzstring (= 1.0.4-1.1), python3-markdown (= 3.3.4-1), python3-markupsafe (= 1.1.1-1build2), python3-matplotlib (= 3.3.4-1), python3-minimal (= 3.9.4-1), python3-mirtop (= 0.4.23-1), python3-mock (= 4.0.3-1), python3-more-itertools (= 4.2.0-3), python3-networkx (= 2.4-4ubuntu1), python3-nose (= 1.3.7-7), python3-numpy (= 1:1.19.5-1ubuntu2), python3-packaging (= 20.9-2), python3-pandas (= 1.1.5+dfsg-2), python3-pandas-lib (= 1.1.5+dfsg-2), python3-pbr (= 5.5.1-0ubuntu1), python3-pil (= 8.1.2-1), python3-pkg-resources (= 52.0.0-3), python3-pluggy (= 0.13.0-6), python3-ply (= 3.11-4), python3-pomegranate (= 0.13.5-1), python3-progressbar (= 2.5-2), python3-psutil (= 5.8.0-1), python3-py (= 1.10.0-1), python3-pybedtools (= 0.8.0-5build2), python3-pyfaidx (= 0.5.9.2-1), python3-pygments (= 2.7.1+dfsg-2ubuntu1), python3-pyparsing (= 2.4.7-1), python3-pysam (= 0.15.4+ds-3build2), python3-pytest (= 6.0.2-2ubuntu1), python3-pytest-mock (= 1.10.4-4), python3-recommonmark (= 0.6.0+ds-1), python3-regex (= 0.1.20201113-1), python3-reportlab (= 3.5.66-1), python3-reportlab-accel (= 3.5.66-1), python3-requests (= 2.25.1+dfsg-2), python3-roman (= 2.0.0-5), python3-scipy (= 1.6.0-2), python3-seqcluster (= 1.2.7+ds-1), python3-setuptools (= 52.0.0-3), python3-simplejson (= 3.17.2-1), python3-six (= 1.15.0-2), python3-sklearn (= 0.23.2-5ubuntu2), python3-sklearn-lib (= 0.23.2-5ubuntu2), python3-snowballstemmer (= 2.1.0-1), python3-spectra (= 0.0.11-2), python3-sphinx (= 3.5.3-1), python3-threadpoolctl (= 2.1.0-1), python3-toml (= 0.10.1-1), python3-toolz (= 0.9.0-1.1), python3-tornado (= 6.1.0-1build1), python3-tz (= 2021.1-1), python3-urllib3 (= 1.26.2-1ubuntu1), python3-vcf (= 0.6.8+git20170215.476169c-7build2), python3-yaml (= 5.3.1-3build1), python3-zipp (= 1.0.0-3), python3.9 (= 3.9.4-1), python3.9-minimal (= 3.9.4-1), pythonpy (= 0.4.11b-3), r-base-core (= 4.0.4-1build1), r-bioc-all (= 1.32.0-1), r-bioc-annotate (= 1.68.0+dfsg-1), r-bioc-annotationdbi (= 1.52.0-1), r-bioc-biobase (= 2.50.0-1build1), r-bioc-biocfilecache (= 1.14.0+dfsg-1), r-bioc-biocgenerics (= 0.36.0-1), r-bioc-biocparallel (= 1.24.1-1), r-bioc-biomart (= 2.46.2+dfsg-1), r-bioc-biostrings (= 2.58.0-1), r-bioc-bsgenome (= 1.58.0-1), r-bioc-complexheatmap (= 2.6.2+dfsg-1), r-bioc-consensusclusterplus (= 1.54.0-1), r-bioc-degreport (= 1.26.0+dfsg-1), r-bioc-delayedarray (= 0.16.1+dfsg-1), r-bioc-deseq2 (= 1.30.1+dfsg-1), r-bioc-dnacopy (= 1.64.0-1), r-bioc-edger (= 3.32.1+dfsg-1), r-bioc-genefilter (= 1.72.1-1), r-bioc-geneplotter (= 1.68.0-1), r-bioc-genomeinfodb (= 1.26.2-2), r-bioc-genomeinfodbdata (= 1.2.4-1), r-bioc-genomicalignments (= 1.26.0-1), r-bioc-genomicfeatures (= 1.42.1+dfsg-1), r-bioc-genomicranges (= 1.42.0+dfsg-1), r-bioc-htsfilter (= 1.30.1+dfsg-1), r-bioc-iranges (= 2.24.1-1), r-bioc-limma (= 3.46.0+dfsg-1), r-bioc-matrixgenerics (= 1.2.1-4), r-bioc-purecn (= 1.20.0+dfsg-3), r-bioc-rhdf5 (= 2.34.0+dfsg-1), r-bioc-rhdf5filters (= 1.2.0+dfsg2-1), r-bioc-rhdf5lib (= 1.12.1+dfsg-2), r-bioc-rhtslib (= 1.22.0+dfsg-1), r-bioc-rsamtools (= 2.6.0-1), r-bioc-rtracklayer (= 1.50.0-1), r-bioc-s4vectors (= 0.28.1-1), r-bioc-summarizedexperiment (= 1.20.0+dfsg-1), r-bioc-titancna (= 1.28.0-2), r-bioc-tximport (= 1.18.0+dfsg-1), r-bioc-variantannotation (= 1.36.0-1), r-bioc-xvector (= 0.30.0-1), r-bioc-zlibbioc (= 1.36.0+dfsg-1), r-cran-askpass (= 1.1-2), r-cran-assertthat (= 0.2.1-2build1), r-cran-backports (= 1.2.1-1), r-cran-base64enc (= 0.1-3-3), r-cran-bh (= 1.74.0-1), r-cran-bit (= 4.0.4+dfsg-1), r-cran-bit64 (= 4.0.5-1), r-cran-bitops (= 1.0-6-5), r-cran-blob (= 1.2.1-2build1), r-cran-brio (= 1.1.1-1), r-cran-broom (= 0.7.4+dfsg-1), r-cran-cachem (= 1.0.3-1), r-cran-cairo (= 1.5-12.2-1), r-cran-callr (= 3.5.1-1), r-cran-cellranger (= 1.1.0-3), r-cran-circlize (= 0.4.12-1), r-cran-cli (= 2.3.0-1), r-cran-clipr (= 0.7.1-1), r-cran-clue (= 0.3-58-1), r-cran-cluster (= 2.1.1-1build1), r-cran-codetools (= 0.2-18-1), r-cran-colorspace (= 2.0-0+dfsg-1), r-cran-commonmark (= 1.7-2), r-cran-cowplot (= 1.1.1+dfsg-1), r-cran-cpp11 (= 0.2.6-1), r-cran-crayon (= 1.4.0-1), r-cran-curl (= 4.3+dfsg-1build1), r-cran-data.table (= 1.13.6+dfsg-1), r-cran-dbi (= 1.1.1-1), r-cran-dbplyr (= 2.1.0-1), r-cran-desc (= 1.2.0-3build1), r-cran-diffobj (= 0.3.2-1), r-cran-digest (= 0.6.27-1), r-cran-dplyr (= 1.0.4-1), r-cran-ellipsis (= 0.3.1-1build1), r-cran-evaluate (= 0.14-2build1), r-cran-fansi (= 0.4.2-1), r-cran-farver (= 2.0.3-1build2), r-cran-fastmap (= 1.1.0-1), r-cran-forcats (= 0.5.1-1), r-cran-foreach (= 1.5.1-1), r-cran-formatr (= 1.7-2build1), r-cran-fs (= 1.5.0+dfsg-1), r-cran-futile.logger (= 1.4.3-4build1), r-cran-futile.options (= 1.0.1-3build1), r-cran-generics (= 0.1.0-1), r-cran-getoptlong (= 1.0.5+dfsg-1), r-cran-ggdendro (= 0.1.22+dfsg-1), r-cran-ggplot2 (= 3.3.3+dfsg-1), r-cran-ggrepel (= 0.9.1-1), r-cran-globaloptions (= 0.1.2-1), r-cran-glue (= 1.4.2-1), r-cran-gridbase (= 0.4-7-5build1), r-cran-gridextra (= 2.3-3build1), r-cran-gtable (= 0.3.0+dfsg-2build1), r-cran-haven (= 2.3.1-1), r-cran-highr (= 0.8+dfsg-2build1), r-cran-hms (= 1.0.0-1), r-cran-htmltools (= 0.5.1.1-1), r-cran-httpuv (= 1.5.5+dfsg-1), r-cran-httr (= 1.4.2-1), r-cran-isoband (= 0.2.3-2), r-cran-iterators (= 1.0.13-1), r-cran-jsonlite (= 1.7.2+dfsg-1), r-cran-knitr (= 1.31+dfsg-1), r-cran-labeling (= 0.4.2-1), r-cran-lambda.r (= 1.2.4-2build1), r-cran-lasso2 (= 1.2-21.1-1), r-cran-later (= 1.1.0.1+dfsg-1), r-cran-lattice (= 0.20-41-1build1), r-cran-lifecycle (= 0.2.0-2build1), r-cran-littler (= 0.3.12-1), r-cran-locfit (= 1.5-9.4-2build1), r-cran-logging (= 0.10-108-2build1), r-cran-lubridate (= 1.7.9.2+dfsg-1), r-cran-magrittr (= 2.0.1-1), r-cran-markdown (= 1.1+dfsg-1build1), r-cran-mass (= 7.3-53.1-1), r-cran-matrix (= 1.3-2+really1.3-2-0ubuntu1), r-cran-matrixstats (= 0.58.0-2), r-cran-memoise (= 2.0.0-1), r-cran-mgcv (= 1.8-34-1), r-cran-mime (= 0.9-1build1), r-cran-mnormt (= 2.0.2-1), r-cran-modelr (= 0.1.8-1build1), r-cran-munsell (= 0.5.0-2build1), r-cran-nlme (= 3.1.152-1), r-cran-nozzle.r1 (= 1.1-1+dfsg-4build1), r-cran-openssl (= 1.4.3+dfsg-2), r-cran-pillar (= 1.4.7-1), r-cran-pkgbuild (= 1.2.0-1), r-cran-pkgconfig (= 2.0.3-2build1), r-cran-pkgkitten (= 0.2.1-1), r-cran-pkgload (= 1.1.0-1), r-cran-plogr (= 0.2.0-3build1), r-cran-plyr (= 1.8.6-2build1), r-cran-png (= 0.1-7-4), r-cran-praise (= 1.0.0-4build1), r-cran-prettyunits (= 1.1.1-2build1), r-cran-processx (= 3.4.5-1), r-cran-progress (= 1.2.2-2build1), r-cran-promises (= 1.1.1+dfsg-1), r-cran-ps (= 1.5.0-1), r-cran-psych (= 2.0.12-1), r-cran-purrr (= 0.3.4-1build1), r-cran-r6 (= 2.5.0-1), r-cran-rappdirs (= 0.3.3-1), r-cran-rcolorbrewer (= 1.1-2-3), r-cran-rcpp (= 1.0.6-1), r-cran-rcpparmadillo (= 0.10.2.1.0-1build1), r-cran-rcurl (= 1.98-1.2-1build1), r-cran-readr (= 1.4.0-1), r-cran-readxl (= 1.3.1-2build2), r-cran-rematch (= 1.0.1-3), r-cran-rematch2 (= 2.1.2-2build1), r-cran-reprex (= 1.0.0-1), r-cran-reshape (= 0.8.8-2build1), r-cran-rjson (= 0.2.20-2), r-cran-rlang (= 0.4.10-1ubuntu1), r-cran-rmarkdown (= 2.6+dfsg-1), r-cran-rprojroot (= 2.0.2-1), r-cran-rsqlite (= 2.2.3-1), r-cran-rstudioapi (= 0.13-1), r-cran-rvest (= 0.3.6-1), r-cran-scales (= 1.1.1-1build1), r-cran-selectr (= 0.4-2-2build1), r-cran-shape (= 1.4.5-1), r-cran-shiny (= 1.5.0+dfsg-1), r-cran-snow (= 1:0.4.3-2), r-cran-sourcetools (= 0.1.7-3), r-cran-stringi (= 1.5.3-1), r-cran-stringr (= 1.4.0-2build1), r-cran-survival (= 3.2-7-1), r-cran-sys (= 3.4-1), r-cran-testthat (= 3.0.1-1), r-cran-tibble (= 3.0.6+dfsg-1), r-cran-tidyr (= 1.1.2-1), r-cran-tidyselect (= 1.1.0+dfsg-1build1), r-cran-tidyverse (= 1.3.0-2build1), r-cran-tinytex (= 0.29-1), r-cran-tmvnsim (= 1.0-2-1), r-cran-utf8 (= 1.1.4-2), r-cran-vctrs (= 0.3.6-1), r-cran-vgam (= 1.1-5-1), r-cran-viridislite (= 0.3.0-4), r-cran-waldo (= 0.2.3-2), r-cran-withr (= 2.4.1-1), r-cran-xfun (= 0.20-1), r-cran-xml (= 3.99-0.5-1), r-cran-xml2 (= 1.3.2-1build1), r-cran-xtable (= 1:1.8-4-2), r-cran-yaml (= 2.2.1-1build1), r-other-wasabi (= 1.0.1-2build1), rapmap (= 0.15.0+dfsg-1build1), readline-common (= 8.1-1), rna-star (= 2.7.8a+dfsg-2), rpcsvc-proto (= 1.4.2-0ubuntu4), salmon (= 1.4.0+ds1-1build1), samblaster (= 0.1.26-1), samtools (= 1.11-1), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.14), seqan-apps (= 2.4.0+dfsg-14ubuntu1), seqtk (= 1.3-2), sgml-base (= 1.30), sphinx-common (= 3.5.3-1), sphinx-rtd-theme-common (= 0.5.1+dfsg-1), subread (= 2.0.1+dfsg-1), sysvinit-utils (= 2.96-6ubuntu1), tabix (= 1.11-4), tar (= 1.34+dfsg-1build1), tophat-recondition (= 1.4-3), ttf-bitstream-vera (= 1.10-8.1), tzdata (= 2021a-1ubuntu1), ucf (= 3.0043), umis (= 1.0.7-1build1), unzip (= 6.0-26ubuntu1), util-linux (= 2.36.1-7ubuntu2), vcfanno (= 0.3.2+ds-2), vt (= 0.57721+ds-3), wham-align (= 0.1.5-8), x11-common (= 1:7.7+22ubuntu1), xdg-utils (= 1.1.3-2ubuntu2), xml-core (= 0.18+nmu1), xonsh (= 0.9.25+dfsg-1), xz-utils (= 5.2.5-1.0build2), zip (= 3.0-12), zlib1g (= 1:1.2.11.dfsg-2ubuntu6), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu6) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1611665723" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bcbio_1.2.5-1_all.deb --------------------- new Debian package, version 2.0. size 39520 bytes: control archive=4236 bytes. 1787 bytes, 31 lines control 8099 bytes, 94 lines md5sums 235 bytes, 12 lines * postinst #!/bin/sh 384 bytes, 12 lines * prerm #!/bin/sh Package: bcbio Version: 1.2.5-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 246 Depends: python3:any, python3-bcbio Recommends: bcftools, cnvkit, cufflinks, delly, fastqc, freebayes, grabix, libvcflib-tools, macs, pythonpy, rna-star, hisat2, sambamba, samblaster, samtools, salmon, stringtie, subread, tabix, umis, varscan, wget, wham-align Suggests: toil, cwltool, kallisto, bcbio-doc, qualimap, libglu1-mesa, tophat2, tophat-recondition, r-other-wasabi Section: contrib/science Priority: optional Homepage: https://github.com/bcbio/bcbio-nextgen Description: toolkit for analysing high-throughput sequencing data This package installs the command line tools of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis. . A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology. . This package builds and having it in Debian unstable helps the Debian developers to synchronize their efforts. But unless a series of external dependencies are not installed manually, the functionality of bcbio in Debian is only a shadow of itself. Please use the official distribution of bcbio for the time being, which means "use conda". The TODO file in the Debian directory should give an overview on progress for Debian packaging. drwxr-xr-x root/root 0 2021-01-26 12:55 ./ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/bin/ -rwxr-xr-x root/root 11506 2021-01-26 12:55 ./usr/bin/bcbio_fastq_umi_prep.py -rwxr-xr-x root/root 11182 2021-01-26 12:55 ./usr/bin/bcbio_nextgen.py -rwxr-xr-x root/root 8938 2021-01-26 12:55 ./usr/bin/bcbio_prepare_samples.py -rwxr-xr-x root/root 15179 2021-01-26 12:55 ./usr/bin/bcbio_setup_genome.py -rwxr-xr-x root/root 14160 2021-01-26 12:55 ./usr/bin/cwltool2wdl.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/bcbio/ drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/ -rw-r--r-- root/root 1093 2021-01-09 16:55 ./usr/share/bcbio/config/bcbio_sample.yaml -rw-r--r-- root/root 2090 2021-01-09 16:55 ./usr/share/bcbio/config/bcbio_system.yaml drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/examples/ -rw-r--r-- root/root 1002 2021-01-09 16:55 ./usr/share/bcbio/config/examples/HCC2218-sv-getdata.sh -rw-r--r-- root/root 1292 2021-01-09 16:55 ./usr/share/bcbio/config/examples/HCC2218-sv.yaml -rw-r--r-- root/root 2586 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-ensemble.yaml -rw-r--r-- root/root 791 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-exome-methodcmp-getdata.sh -rw-r--r-- root/root 781 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-exome-methodcmp.yaml -rw-r--r-- root/root 573 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-hg38-validate-getdata.sh -rw-r--r-- root/root 5854 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-hg38-validate.yaml -rw-r--r-- root/root 816 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-illumina.yaml -rw-r--r-- root/root 1090 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-sv-getdata.sh -rw-r--r-- root/root 970 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-sv.yaml -rw-r--r-- root/root 7390 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-trio-wgs-joint.yaml -rw-r--r-- root/root 665 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-trio-wgs-validate-getdata.sh -rw-r--r-- root/root 1559 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878-trio-wgs-validate.yaml -rw-r--r-- root/root 1178 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA12878.validate.sh -rw-r--r-- root/root 1424 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA24385-10x-getdata.sh -rw-r--r-- root/root 1128 2021-01-09 16:55 ./usr/share/bcbio/config/examples/NA24385-10x.yaml drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/examples/archived/ -rw-r--r-- root/root 768 2021-01-09 16:55 ./usr/share/bcbio/config/examples/archived/NA12878-trio-sv-getdata.sh -rw-r--r-- root/root 1637 2021-01-09 16:55 ./usr/share/bcbio/config/examples/archived/NA12878-trio-sv.yaml -rw-r--r-- root/root 1767 2021-01-09 16:55 ./usr/share/bcbio/config/examples/cancer-dream-syn3-getdata.sh -rw-r--r-- root/root 1817 2021-01-09 16:55 ./usr/share/bcbio/config/examples/cancer-dream-syn3.yaml -rw-r--r-- root/root 3273 2021-01-09 16:55 ./usr/share/bcbio/config/examples/cancer-dream-syn4.yaml -rw-r--r-- root/root 1020 2021-01-09 16:55 ./usr/share/bcbio/config/examples/cancer-giab-na12878-na24385-getdata.sh -rw-r--r-- root/root 1288 2021-01-09 16:55 ./usr/share/bcbio/config/examples/cancer-giab-na12878-na24385.yaml -rw-r--r-- root/root 655 2021-01-09 16:55 ./usr/share/bcbio/config/examples/chip_seq.yaml -rw-r--r-- root/root 825 2021-01-09 16:55 ./usr/share/bcbio/config/examples/giab-validate-setup.sh -rw-r--r-- root/root 1340 2021-01-09 16:55 ./usr/share/bcbio/config/examples/giab-validate.yaml -rw-r--r-- root/root 1142 2021-01-09 16:55 ./usr/share/bcbio/config/examples/mitochondrial_variants_amplicons.yaml -rw-r--r-- root/root 1011 2021-01-09 16:55 ./usr/share/bcbio/config/examples/rnaseq-seqc-getdata.sh -rw-r--r-- root/root 240 2021-01-09 16:55 ./usr/share/bcbio/config/examples/rnaseq-seqc.yaml -rw-r--r-- root/root 418 2021-01-09 16:55 ./usr/share/bcbio/config/examples/rnaseq.variant_calling.yaml -rw-r--r-- root/root 204 2021-01-09 16:55 ./usr/share/bcbio/config/examples/seqc.csv -rw-r--r-- root/root 1891 2021-01-09 16:55 ./usr/share/bcbio/config/examples/somatic_tumor_normal_gatkcnv.yaml drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/galaxy/ drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/galaxy/bcbio/ -rw-r--r-- root/root 2655 2021-01-09 16:55 ./usr/share/bcbio/config/galaxy/bcbio/variant.xml drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/ -rw-r--r-- root/root 284 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/BDGP6-resources.yaml -rw-r--r-- root/root 2228 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/GRCh37-resources.yaml -rw-r--r-- root/root 78 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/GRCz10-resources.yaml -rw-r--r-- root/root 70 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/GRCz11-resources.yaml -rw-r--r-- root/root 74 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/Sscrofa11.1-resources.yaml -rw-r--r-- root/root 192 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/TAIR10-resources.yaml -rw-r--r-- root/root 95 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/WBcel235-resources.yaml -rw-r--r-- root/root 657 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/canFam3-resources.yaml -rw-r--r-- root/root 93 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/dm3-resources.yaml -rw-r--r-- root/root 84 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/galGal4-resources.yaml -rw-r--r-- root/root 2383 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/hg19-resources.yaml -rw-r--r-- root/root 1346 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/hg38-noalt-resources.yaml -rw-r--r-- root/root 2113 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/hg38-resources.yaml -rw-r--r-- root/root 749 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/mm10-resources.yaml -rw-r--r-- root/root 194 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/mm9-resources.yaml -rw-r--r-- root/root 88 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/phix-resources.yaml -rw-r--r-- root/root 68 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/pseudomonas_aeruginosa_ucbpp_pa14-resources.yaml -rw-r--r-- root/root 349 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/rn5-resources.yaml -rw-r--r-- root/root 593 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/rn6-resources.yaml -rw-r--r-- root/root 403 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/sacCer3-resources.yaml -rw-r--r-- root/root 89 2021-01-09 16:55 ./usr/share/bcbio/config/genomes/xenTro3-resources.yaml drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/teaching/ -rw-r--r-- root/root 522 2021-01-09 16:55 ./usr/share/bcbio/config/teaching/cancer-syn3-chr6-prep.sh -rw-r--r-- root/root 1685 2021-01-09 16:55 ./usr/share/bcbio/config/teaching/cancer-syn3-chr6.yaml drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/templates/ -rw-r--r-- root/root 246 2021-01-09 16:55 ./usr/share/bcbio/config/templates/bisulfite_seq.yaml -rw-r--r-- root/root 531 2021-01-09 16:55 ./usr/share/bcbio/config/templates/freebayes-variant.yaml -rw-r--r-- root/root 503 2021-01-09 16:55 ./usr/share/bcbio/config/templates/gatk-joint-genotyping.yaml -rw-r--r-- root/root 455 2021-01-09 16:55 ./usr/share/bcbio/config/templates/gatk-variant.yaml -rw-r--r-- root/root 689 2021-01-09 16:55 ./usr/share/bcbio/config/templates/illumina-chipseq.yaml -rw-r--r-- root/root 150 2021-01-09 16:55 ./usr/share/bcbio/config/templates/illumina-fastrnaseq.yaml -rw-r--r-- root/root 1230 2021-01-09 16:55 ./usr/share/bcbio/config/templates/illumina-rnaseq.yaml -rw-r--r-- root/root 614 2021-01-09 16:55 ./usr/share/bcbio/config/templates/illumina-srnaseq.yaml -rw-r--r-- root/root 295 2021-01-09 16:55 ./usr/share/bcbio/config/templates/indrop-singlecell.yaml -rw-r--r-- root/root 672 2021-01-09 16:55 ./usr/share/bcbio/config/templates/noalign-variant.yaml -rw-r--r-- root/root 1026 2021-01-09 16:55 ./usr/share/bcbio/config/templates/somatic-duplex-umi.yaml -rw-r--r-- root/root 1348 2021-01-09 16:55 ./usr/share/bcbio/config/templates/somatic-single-umi.yaml -rw-r--r-- root/root 750 2021-01-09 16:55 ./usr/share/bcbio/config/templates/tumor-paired.yaml -rw-r--r-- root/root 2164 2021-01-09 16:55 ./usr/share/bcbio/config/transfer_info.yaml drwxr-xr-x root/root 0 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/ -rw-r--r-- root/root 3451 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/GRCh37-dbnsfp.conf -rw-r--r-- root/root 435 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/GRCh37-dbscsnv.conf -rw-r--r-- root/root 4194 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/GRCh37-gemini.conf -rw-r--r-- root/root 3900 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/GRCh37-gemini.lua -rw-r--r-- root/root 1177 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/GRCh37-gnomad_genome.conf -rw-r--r-- root/root 3494 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/hg38-dbnsfp.conf -rw-r--r-- root/root 434 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/hg38-dbscsnv.conf -rw-r--r-- root/root 3781 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/hg38-gemini.conf -rw-r--r-- root/root 3618 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/hg38-gemini.lua -rw-r--r-- root/root 1198 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/hg38-gnomad_genome.conf -rw-r--r-- root/root 252 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/mm10-gemini.conf -rw-r--r-- root/root 122 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/rnaedit.conf -rw-r--r-- root/root 177 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/rnaedit.lua -rw-r--r-- root/root 801 2021-01-09 16:55 ./usr/share/bcbio/config/vcfanno/somatic.conf drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/doc/bcbio/ lrwxrwxrwx root/root 0 2021-01-26 12:55 ./usr/share/doc/bcbio/changelog.Debian.gz -> ../python3-bcbio/changelog.Debian.gz -rw-r--r-- root/root 3026 2020-09-25 22:56 ./usr/share/doc/bcbio/copyright drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/lintian/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 421 2020-04-30 20:58 ./usr/share/lintian/overrides/bcbio drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/man/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/man/man1/ -rw-r--r-- root/root 20 2021-01-26 12:55 ./usr/share/man/man1/bcbio_nextgen.1.gz python3-bcbio_1.2.5-1_all.deb ----------------------------- new Debian package, version 2.0. size 1228964 bytes: control archive=8860 bytes. 1530 bytes, 24 lines control 27070 bytes, 299 lines md5sums 251 bytes, 12 lines * postinst #!/bin/sh 400 bytes, 12 lines * prerm #!/bin/sh Package: python3-bcbio Source: bcbio Version: 1.2.5-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4817 Depends: python3:any, python3-biopython, python3-cyvcf2, python3-joblib, python3-logbook, python3-matplotlib, python3-psutil, python3-pysam, python3-requests, python3-scipy, python3-six, python3-tornado Recommends: cnvkit, gsort, libfreetype6, lumpy-sv, mosdepth, multiqc, python3-arrow, python3-geneimpacts, python3-h5py, python3-pyvcf, python3-seqcluster, python3-statsmodels, python3-tabulate, r-other-wasabi, r-bioc-purecn, r-bioc-titancna, seqan-apps, vcfanno, vt Suggests: bcbio-doc, python3-bioblend, python3-dnapilib, python3-msgpack Section: contrib/python Priority: optional Homepage: https://github.com/bcbio/bcbio-nextgen Description: library for analysing high-throughput sequencing data This package installs the Python 3 libraries of the bcbio-nextgen toolkit implementing best-practice pipelines for fully automated high throughput sequencing analysis. . A high-level configuration file specifies inputs and analysis parameters to drive a parallel pipeline that handles distributed execution, idempotent processing restarts and safe transactional steps. The project contributes a shared community resource that handles the data processing component of sequencing analysis, providing researchers with more time to focus on the downstream biology. drwxr-xr-x root/root 0 2021-01-26 12:55 ./ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/ -rw-r--r-- root/root 47 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/__init__.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/bam/ -rw-r--r-- root/root 26949 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/__init__.py -rw-r--r-- root/root 18991 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/callable.py -rw-r--r-- root/root 2211 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/counts.py -rw-r--r-- root/root 6313 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/coverage.py -rw-r--r-- root/root 2540 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/cram.py -rw-r--r-- root/root 1404 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/fasta.py -rw-r--r-- root/root 12522 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/fastq.py -rw-r--r-- root/root 5086 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/bam/readstats.py -rw-r--r-- root/root 952 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/ref.py -rw-r--r-- root/root 3170 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/skewer.py -rw-r--r-- root/root 13125 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bam/trim.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/bed/ -rw-r--r-- root/root 2064 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/bed/__init__.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/broad/ -rw-r--r-- root/root 26192 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/broad/__init__.py -rw-r--r-- root/root 21780 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/broad/metrics.py -rw-r--r-- root/root 13620 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/broad/picardrun.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/chipseq/ -rw-r--r-- root/root 9326 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/chipseq/__init__.py -rw-r--r-- root/root 1382 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/chipseq/antibodies.py -rw-r--r-- root/root 10797 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/chipseq/atac.py -rw-r--r-- root/root 4504 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/chipseq/macs2.py -rw-r--r-- root/root 15247 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/chipseq/peaks.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/cwl/ -rw-r--r-- root/root 74 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/__init__.py -rw-r--r-- root/root 40519 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/create.py -rw-r--r-- root/root 10668 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/cwlutils.py -rw-r--r-- root/root 39659 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/defs.py -rw-r--r-- root/root 17379 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/hpc.py -rw-r--r-- root/root 3575 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/inspect.py -rw-r--r-- root/root 575 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/main.py -rw-r--r-- root/root 15810 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/tool.py -rw-r--r-- root/root 21021 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/cwl/workflow.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/ -rw-r--r-- root/root 2237411 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/10x_v2-cb1.txt.gz -rw-r--r-- root/root 205 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/10x_v2-transform.json -rw-r--r-- root/root 155 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/dropseq-transform.json -rw-r--r-- root/root 1336 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v2-cb1.txt.gz -rw-r--r-- root/root 1139 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v2-cb2.txt.gz -rw-r--r-- root/root 200 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v2-transform.json -rw-r--r-- root/root 1168 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v3-cb1.txt.gz -rw-r--r-- root/root 1139 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v3-cb2.txt.gz -rw-r--r-- root/root 116 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v3-sample_barcodes.txt.gz -rw-r--r-- root/root 254 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-indrop-v3-transform.json -rw-r--r-- root/root 860 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-scrb-cb1.txt.gz -rw-r--r-- root/root 153 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/harvard-scrb-transform.json -rw-r--r-- root/root 20077 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/icell8-cb1.txt.gz -rw-r--r-- root/root 223 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/icell8-transform.json -rw-r--r-- root/root 121 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/qiagen_smallRNA_umi-transform.json -rw-r--r-- root/root 1454 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/qiaseq-upx-384-cb1.txt.gz -rw-r--r-- root/root 167 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/qiaseq-upx-384-transform.json -rw-r--r-- root/root 402 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/qiaseq-upx-96-cb1.txt.gz -rw-r--r-- root/root 167 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/qiaseq-upx-96-transform.json -rw-r--r-- root/root 271 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/surecell-cb1.txt.gz -rw-r--r-- root/root 271 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/surecell-cb2.txt.gz -rw-r--r-- root/root 271 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/surecell-cb3.txt.gz -rw-r--r-- root/root 214 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/data/umis/surecell-transform.json drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/distributed/ -rw-r--r-- root/root 76 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/__init__.py -rw-r--r-- root/root 1246 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/clargs.py -rw-r--r-- root/root 1251 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/clusterk.py -rw-r--r-- root/root 5710 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/ipython.py -rw-r--r-- root/root 19933 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/ipythontasks.py -rw-r--r-- root/root 3761 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/multi.py -rw-r--r-- root/root 11980 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/multitasks.py -rw-r--r-- root/root 23445 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/objectstore.py -rw-r--r-- root/root 2929 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/prun.py -rw-r--r-- root/root 9705 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/resources.py -rw-r--r-- root/root 27105 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/runfn.py -rw-r--r-- root/root 6327 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/split.py -rw-r--r-- root/root 5235 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/distributed/transaction.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/dragen/ -rw-r--r-- root/root 0 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/dragen/__init__.py -rw-r--r-- root/root 2002 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/dragen/dragen.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/galaxy/ -rw-r--r-- root/root 57 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/galaxy/__init__.py -rw-r--r-- root/root 2858 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/galaxy/api.py -rw-r--r-- root/root 3176 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/galaxy/loc.py -rw-r--r-- root/root 8015 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/galaxy/nglims.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/graph/ -rw-r--r-- root/root 89 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/graph/__init__.py -rw-r--r-- root/root 11878 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/graph/collectl.py -rw-r--r-- root/root 15177 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/graph/graph.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/heterogeneity/ -rw-r--r-- root/root 5849 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/heterogeneity/__init__.py -rw-r--r-- root/root 21973 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/heterogeneity/bubbletree.py -rw-r--r-- root/root 2989 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/heterogeneity/chromhacks.py -rw-r--r-- root/root 15786 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/heterogeneity/loh.py -rw-r--r-- root/root 12141 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/heterogeneity/phylowgs.py -rw-r--r-- root/root 10129 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/heterogeneity/theta.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/hla/ -rw-r--r-- root/root 991 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/hla/__init__.py -rw-r--r-- root/root 4024 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/hla/bwakit.py -rw-r--r-- root/root 15011 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/hla/groups.py -rw-r--r-- root/root 6343 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/hla/optitype.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/hmmer/ -rw-r--r-- root/root 41 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/hmmer/__init__.py -rw-r--r-- root/root 3715 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/hmmer/search.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/illumina/ -rw-r--r-- root/root 66 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/illumina/__init__.py -rw-r--r-- root/root 2335 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/illumina/demultiplex.py -rw-r--r-- root/root 3017 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/illumina/flowcell.py -rw-r--r-- root/root 7237 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/illumina/machine.py -rw-r--r-- root/root 5063 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/illumina/samplesheet.py -rw-r--r-- root/root 2038 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/illumina/transfer.py -rw-r--r-- root/root 37019 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/install.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/log/ -rw-r--r-- root/root 6909 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/log/__init__.py -rw-r--r-- root/root 4230 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/log/logbook_zmqpush.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/ -rw-r--r-- root/root 69 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/__init__.py -rw-r--r-- root/root 33528 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/alignprep.py -rw-r--r-- root/root 1916 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/bbmap.py -rw-r--r-- root/root 6398 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/bismark.py -rw-r--r-- root/root 3136 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/bowtie.py -rw-r--r-- root/root 6941 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/bowtie2.py -rw-r--r-- root/root 2110 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/bsmap.py -rw-r--r-- root/root 17445 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/bwa.py -rw-r--r-- root/root 6104 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/hisat2.py -rw-r--r-- root/root 2380 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/minimap2.py -rw-r--r-- root/root 4046 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/mosaik.py -rw-r--r-- root/root 6300 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/novoalign.py -rw-r--r-- root/root 16408 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/postalign.py -rw-r--r-- root/root 3614 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/rtg.py -rw-r--r-- root/root 4231 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/snap.py -rw-r--r-- root/root 14590 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/star.py -rw-r--r-- root/root 14198 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/ngsalign/tophat.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/picard/ -rw-r--r-- root/root 112 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/picard/__init__.py -rw-r--r-- root/root 94 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/picard/metrics.py -rw-r--r-- root/root 64 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/picard/utils.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/ -rw-r--r-- root/root 598 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/__init__.py -rw-r--r-- root/root 7903 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/alignment.py -rw-r--r-- root/root 996 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/archive.py -rw-r--r-- root/root 8337 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/cleanbam.py -rw-r--r-- root/root 19441 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/config_utils.py -rw-r--r-- root/root 20264 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/datadict.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/disambiguate/ -rw-r--r-- root/root 7540 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/disambiguate/__init__.py -rw-r--r-- root/root 16990 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/disambiguate/run.py -rw-r--r-- root/root 5886 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/fastq.py -rw-r--r-- root/root 13607 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/genome.py -rw-r--r-- root/root 27572 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/main.py -rw-r--r-- root/root 6282 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/merge.py -rw-r--r-- root/root 17382 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/qcsummary.py -rw-r--r-- root/root 7914 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/region.py -rw-r--r-- root/root 27742 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/rnaseq.py -rw-r--r-- root/root 53577 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/run_info.py -rw-r--r-- root/root 19772 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/sample.py -rw-r--r-- root/root 12833 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/shared.py -rw-r--r-- root/root 5203 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/sra.py -rw-r--r-- root/root 1463 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/tools.py -rw-r--r-- root/root 7635 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/variation.py -rw-r--r-- root/root 54 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/pipeline/version.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/provenance/ -rw-r--r-- root/root 86 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/provenance/__init__.py -rw-r--r-- root/root 1593 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/provenance/data.py -rw-r--r-- root/root 2443 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/provenance/diagnostics.py -rw-r--r-- root/root 5487 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/provenance/do.py -rw-r--r-- root/root 319 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/provenance/profile.py -rw-r--r-- root/root 11812 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/provenance/programs.py -rw-r--r-- root/root 10220 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/provenance/system.py -rw-r--r-- root/root 4073 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/provenance/versioncheck.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/qc/ -rw-r--r-- root/root 44 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/__init__.py -rw-r--r-- root/root 139 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/atac.py -rw-r--r-- root/root 878 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/atropos.py -rw-r--r-- root/root 2945 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/chipseq.py -rw-r--r-- root/root 5482 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/contamination.py -rw-r--r-- root/root 5552 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/coverage.py -rw-r--r-- root/root 1151 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/damage.py -rw-r--r-- root/root 6075 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/fastqc.py -rw-r--r-- root/root 4181 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/kraken.py -rw-r--r-- root/root 26725 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/multiqc.py -rw-r--r-- root/root 1783 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/picard.py -rw-r--r-- root/root 6601 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/preseq.py -rw-r--r-- root/root 8725 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/qsignature.py -rw-r--r-- root/root 18576 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/qualimap.py -rw-r--r-- root/root 3395 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/samtools.py -rw-r--r-- root/root 3339 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/srna.py -rw-r--r-- root/root 3168 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/umi.py -rw-r--r-- root/root 6251 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/variant.py -rw-r--r-- root/root 5529 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/qc/viral.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/ -rw-r--r-- root/root 65 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/__init__.py -rw-r--r-- root/root 3387 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/annotate_gtf.py -rw-r--r-- root/root 2689 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/arriba.py -rw-r--r-- root/root 7763 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/bcbiornaseq.py -rw-r--r-- root/root 2705 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/count.py -rw-r--r-- root/root 6296 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/cpat.py -rw-r--r-- root/root 10844 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/cufflinks.py -rw-r--r-- root/root 4276 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/dexseq.py -rw-r--r-- root/root 6656 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/ericscript.py -rw-r--r-- root/root 4189 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/express.py -rw-r--r-- root/root 7361 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/featureCounts.py -rw-r--r-- root/root 16913 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/gtf.py -rw-r--r-- root/root 8459 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/kallisto.py -rw-r--r-- root/root 8016 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/oncofuse.py -rw-r--r-- root/root 5043 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/pizzly.py -rw-r--r-- root/root 2197 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/qc.py -rw-r--r-- root/root 4436 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/rapmap.py -rw-r--r-- root/root 2349 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/rsem.py -rw-r--r-- root/root 8177 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/sailfish.py -rw-r--r-- root/root 11100 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/salmon.py -rw-r--r-- root/root 2928 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/singlecellexperiment.py -rw-r--r-- root/root 4792 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/spikein.py -rw-r--r-- root/root 5368 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/stringtie.py -rw-r--r-- root/root 20302 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/umi.py -rw-r--r-- root/root 9883 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/rnaseq/variation.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/scripts/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/scripts/R/ -rw-r--r-- root/root 2338 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/scripts/R/bcbio2se.R -rw-r--r-- root/root 6716 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/scripts/R/se2qc.Rmd drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/server/ -rw-r--r-- root/root 72 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/server/__init__.py -rw-r--r-- root/root 4782 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/server/background.py -rw-r--r-- root/root 1676 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/server/main.py -rw-r--r-- root/root 3701 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/server/run.py -rw-r--r-- root/root 2759 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/setpath.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/srna/ -rw-r--r-- root/root 42 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/srna/__init__.py -rw-r--r-- root/root 9374 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/srna/group.py -rw-r--r-- root/root 4659 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/srna/mirdeep.py -rw-r--r-- root/root 2950 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/srna/mirge.py -rw-r--r-- root/root 40 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/srna/qc.py -rw-r--r-- root/root 15251 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/srna/sample.py -rw-r--r-- root/root 3238 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/srna/umis.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/structural/ -rw-r--r-- root/root 17117 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/__init__.py -rw-r--r-- root/root 4732 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/annotate.py -rw-r--r-- root/root 5649 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/battenberg.py -rw-r--r-- root/root 10997 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/cn_mops.py -rw-r--r-- root/root 36073 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/structural/cnvkit.py -rw-r--r-- root/root 4307 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/convert.py -rw-r--r-- root/root 9035 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/delly.py -rw-r--r-- root/root 17264 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/gatkcnv.py -rw-r--r-- root/root 5175 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/gridss.py -rw-r--r-- root/root 7180 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/hydra.py -rw-r--r-- root/root 10974 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/lumpy.py -rw-r--r-- root/root 8220 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/manta.py -rw-r--r-- root/root 2977 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/metasv.py -rw-r--r-- root/root 6857 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/pindel.py -rw-r--r-- root/root 4561 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/plot.py -rw-r--r-- root/root 11005 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/prioritize.py -rw-r--r-- root/root 20407 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/purecn.py -rw-r--r-- root/root 16992 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/purple.py -rw-r--r-- root/root 25063 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/regions.py -rw-r--r-- root/root 1693 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/scramble.py -rw-r--r-- root/root 18695 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/seq2c.py -rw-r--r-- root/root 14360 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/shared.py -rw-r--r-- root/root 12683 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/titancna.py -rw-r--r-- root/root 19051 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/validate.py -rw-r--r-- root/root 3983 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/structural/wham.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/upload/ -rw-r--r-- root/root 41755 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/upload/__init__.py -rw-r--r-- root/root 3605 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/upload/filesystem.py -rw-r--r-- root/root 8248 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/upload/galaxy.py -rw-r--r-- root/root 1597 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/upload/irods.py -rw-r--r-- root/root 4079 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/upload/s3.py -rw-r--r-- root/root 480 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/upload/shared.py -rw-r--r-- root/root 33529 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/utils.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/variation/ -rw-r--r-- root/root 90 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/__init__.py -rw-r--r-- root/root 8918 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/annotation.py -rw-r--r-- root/root 5684 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/bamprep.py -rw-r--r-- root/root 12070 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/bedutils.py -rw-r--r-- root/root 15497 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/cortex.py -rw-r--r-- root/root 13646 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/coverage.py -rw-r--r-- root/root 4334 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/damage.py -rw-r--r-- root/root 4180 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/deepvariant.py -rw-r--r-- root/root 22136 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/effects.py -rw-r--r-- root/root 12487 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/ensemble.py -rw-r--r-- root/root 17947 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/freebayes.py -rw-r--r-- root/root 14200 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/gatk.py -rw-r--r-- root/root 14839 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/gatkfilter.py -rw-r--r-- root/root 9166 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/gatkjoint.py -rw-r--r-- root/root 22094 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/genotype.py -rw-r--r-- root/root 11332 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/germline.py -rw-r--r-- root/root 11473 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/joint.py -rw-r--r-- root/root 9671 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/multi.py -rw-r--r-- root/root 13022 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/mutect.py -rw-r--r-- root/root 13581 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/mutect2.py -rw-r--r-- root/root 10347 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/naming.py -rw-r--r-- root/root 5773 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/normalize.py -rw-r--r-- root/root 7255 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/octopus.py -rw-r--r-- root/root 7136 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/peddy.py -rw-r--r-- root/root 4024 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/pisces.py -rw-r--r-- root/root 3756 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/platypus.py -rw-r--r-- root/root 3630 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/ploidy.py -rw-r--r-- root/root 18836 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/population.py -rw-r--r-- root/root 9055 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/prioritize.py -rw-r--r-- root/root 9481 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/qsnp.py -rw-r--r-- root/root 3891 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/realign.py -rw-r--r-- root/root 10258 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/recalibrate.py -rw-r--r-- root/root 4981 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/samtools.py -rw-r--r-- root/root 10073 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/scalpel.py -rw-r--r-- root/root 9303 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/sentieon.py -rw-r--r-- root/root 2401 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/smcounter2.py -rw-r--r-- root/root 1601 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/split.py -rw-r--r-- root/root 21105 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/strelka2.py -rw-r--r-- root/root 34989 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/validate.py -rw-r--r-- root/root 16505 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/validateplot.py -rw-r--r-- root/root 19796 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/vardict.py -rw-r--r-- root/root 14283 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/varscan.py -rw-r--r-- root/root 8569 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/vcfanno.py -rw-r--r-- root/root 32235 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/vcfutils.py -rw-r--r-- root/root 10588 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/variation/vfilter.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/wgbsseq/ -rw-r--r-- root/root 0 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/wgbsseq/__init__.py -rw-r--r-- root/root 2886 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/wgbsseq/align.py -rw-r--r-- root/root 12269 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/wgbsseq/cpg_caller.py -rw-r--r-- root/root 1827 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/wgbsseq/deduplication.py -rw-r--r-- root/root 329 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/wgbsseq/kits.py -rw-r--r-- root/root 3347 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/wgbsseq/trimming.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio/workflow/ -rw-r--r-- root/root 367 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/workflow/__init__.py -rw-r--r-- root/root 3090 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/workflow/stormseq.py -rw-r--r-- root/root 25206 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/workflow/template.py -rw-r--r-- root/root 3195 2021-01-09 16:55 ./usr/lib/python3/dist-packages/bcbio/workflow/xprize.py drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio_nextgen-1.2.5.egg-info/ -rw-r--r-- root/root 9144 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio_nextgen-1.2.5.egg-info/PKG-INFO -rw-r--r-- root/root 1 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio_nextgen-1.2.5.egg-info/dependency_links.txt -rw-r--r-- root/root 1 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio_nextgen-1.2.5.egg-info/not-zip-safe -rw-r--r-- root/root 6 2021-01-26 12:55 ./usr/lib/python3/dist-packages/bcbio_nextgen-1.2.5.egg-info/top_level.txt drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-01-26 12:55 ./usr/share/doc/python3-bcbio/ -rw-r--r-- root/root 229 2020-04-30 20:58 ./usr/share/doc/python3-bcbio/README.Debian -rw-r--r-- root/root 3116 2021-01-26 12:55 ./usr/share/doc/python3-bcbio/TODO.Debian.gz -rw-r--r-- root/root 854 2021-01-26 12:55 ./usr/share/doc/python3-bcbio/changelog.Debian.gz -rw-r--r-- root/root 3026 2020-09-25 22:56 ./usr/share/doc/python3-bcbio/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 8 Distribution: hirsute-proposed Host Architecture: amd64 Install-Time: 231 Job: bcbio_1.2.5-1.dsc Machine Architecture: amd64 Package: bcbio Package-Time: 240 Source-Version: 1.2.5-1 Space: n/a Status: successful Version: 1.2.5-1 -------------------------------------------------------------------------------- Finished at 2021-04-08T11:09:38Z Build needed 00:04:00, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20937648 Scanning for processes to kill in build PACKAGEBUILD-20937648