beast-mcmc 1.10.4+dfsg-1 source package in Ubuntu

Changelog

beast-mcmc (1.10.4+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * New upstream version
  * Exclude Latex doc creation
  * New Build-Depends: libejml-java
  * New versioned Build-Depends: libhmsbeagle-java (>= 3.0.2)
  * Standards-Version: 4.2.1
  * Do not try to install mac and windows build

  [ Jelmer Vernooń≥ ]
  * Use secure copyright file specification URI.
  * Trim trailing whitespace.

  [ Andreas Tille ]
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
  * Tracer is not build in separate build_tracer.xml any more
  * Upstream does not ship PDF docs any more thus drop -doc package
  * Versioned (Build-)Depends: libhmsbeagle-java (>= 3.1.2~)

 -- Andreas Tille <email address hidden>  Tue, 18 Dec 2018 15:52:51 +0100

Upload details

Uploaded by:
Debian Med on 2018-12-18
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Eoan release on 2019-04-18 multiverse science
Disco release on 2018-12-19 multiverse science

Downloads

File Size SHA-256 Checksum
beast-mcmc_1.10.4+dfsg-1.dsc 2.4 KiB ab8a0fbf8ec8bfe72fdc217febac2e2d206fff07ab27d6e043b1c39b99dedc7c
beast-mcmc_1.10.4+dfsg.orig.tar.xz 4.8 MiB 66740f5e242c4b31dab1e20b893ec1b0b2850fda189670e82c3001b4f89fcf66
beast-mcmc_1.10.4+dfsg-1.debian.tar.xz 15.7 KiB d0a292c3a812736fea34a53c8b491e9ab1bb2061f93e279a7aad5f8d474a2353

Available diffs

No changes file available.

Binary packages built by this source

beast-mcmc: Bayesian MCMC phylogenetic inference

 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard
 analyses and a suit of programs for analysing the results.

beast-mcmc-examples: Bayesian MCMC phylogenetic inference - example data

 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard
 analyses and a suit of programs for analysing the results.
 .
 This package contains the example data.

libnucleotidelikelihoodcore0: implementation of LikelihoodCore for nucleotides used by beast-mcmc

 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
 sequences. It is entirely orientated towards rooted, time-measured
 phylogenies inferred using strict or relaxed molecular clock models. It
 can be used as a method of reconstructing phylogenies but is also a
 framework for testing evolutionary hypotheses without conditioning on a
 single tree topology. BEAST uses MCMC to average over tree space, so that
 each tree is weighted proportional to its posterior probability. Included
 is a simple to use user-interface program for setting up standard
 analyses and a suit of programs for analysing the results.
 .
 This package provides an implementation of LikelihoodCore for nucleotides
 that calls native methods for maximum speed.

libnucleotidelikelihoodcore0-dbgsym: debug symbols for libnucleotidelikelihoodcore0