RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux magic 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Buildd toolchain package versions: launchpad-buildd_119~APM.12.04 python-lpbuildd_119~APM.12.04. Syncing the system clock with the buildd NTP service... 11 Oct 07:49:50 ntpdate[602]: adjust time server 10.211.37.1 offset -0.086950 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-4960217', '/home/buildd/filecache-default/05435ea4f3569216a0e565d22a2d0b2b33bb8933'] Unpacking chroot for build PACKAGEBUILD-4960217 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-4960217'] Mounting chroot for build PACKAGEBUILD-4960217 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-4960217', 'deb http://ftpmaster.internal/ubuntu saucy main universe'] Overriding sources.list in build-PACKAGEBUILD-4960217 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-4960217', 'arm64'] Updating debian chroot for build PACKAGEBUILD-4960217 Ign http://ftpmaster.internal saucy InRelease Ign http://archive-team.internal saucy InRelease Get:1 http://ftpmaster.internal saucy Release.gpg [933 B] Ign http://archive-team.internal saucy Release.gpg Get:2 http://archive-team.internal saucy Release [746 B] Get:3 http://ftpmaster.internal saucy Release [49.6 kB] Ign http://archive-team.internal saucy/main arm64 Packages/DiffIndex Get:4 http://ftpmaster.internal saucy/main arm64 Packages [934 kB] Ign http://archive-team.internal saucy/main Translation-en Get:5 http://archive-team.internal saucy/main arm64 Packages [2418 kB] Get:6 http://ftpmaster.internal saucy/universe arm64 Packages [2619 kB] Get:7 http://ftpmaster.internal saucy/main Translation-en [711 kB] Get:8 http://ftpmaster.internal saucy/universe Translation-en [3884 kB] Fetched 10.6 MB in 13s (760 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libdb5.1 libdbus-1-3 libgcc-4.8-dev libgcc1 libgomp1 libstdc++-4.8-dev libstdc++6 libudev1 linux-libc-dev mountall multiarch-support udev upstart 22 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 30.2 MB of archives. After this operation, 1057 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libdbus-1-3 udev libudev1 mountall upstart libc6-dev libc-dev-bin linux-libc-dev gcc-4.8-base libgcc1 libgomp1 libatomic1 cpp-4.8 g++-4.8 gcc-4.8 libgcc-4.8-dev libstdc++-4.8-dev libstdc++6 libc-bin libc6 libdb5.1 multiarch-support Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libdbus-1-3 arm64 1.6.12-0ubuntu10 [129 kB] Get:2 http://archive-team.internal/bootstrap/arm64/ saucy/main libc6-dev arm64 2.17-93ubuntu3 [2516 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main udev arm64 204-0ubuntu16 [1014 kB] Get:4 http://archive-team.internal/bootstrap/arm64/ saucy/main libc-dev-bin arm64 2.17-93ubuntu3 [73.3 kB] Get:5 http://archive-team.internal/bootstrap/arm64/ saucy/main gcc-4.8-base arm64 4.8.1-10ubuntu7 [152 kB] Get:6 http://archive-team.internal/bootstrap/arm64/ saucy/main libgcc1 arm64 1:4.8.1-10ubuntu7 [36.8 kB] Get:7 http://archive-team.internal/bootstrap/arm64/ saucy/main libgomp1 arm64 4.8.1-10ubuntu7 [23.1 kB] Get:8 http://archive-team.internal/bootstrap/arm64/ saucy/main libatomic1 arm64 4.8.1-10ubuntu7 [7074 B] Get:9 http://archive-team.internal/bootstrap/arm64/ saucy/main cpp-4.8 arm64 4.8.1-10ubuntu7 [4938 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libudev1 arm64 204-0ubuntu16 [30.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main mountall arm64 2.52 [63.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main upstart arm64 1.10-0ubuntu7 [521 kB] Get:13 http://archive-team.internal/bootstrap/arm64/ saucy/main g++-4.8 arm64 4.8.1-10ubuntu7 [6164 kB] Get:14 http://archive-team.internal/bootstrap/arm64/ saucy/main gcc-4.8 arm64 4.8.1-10ubuntu7 [5692 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main linux-libc-dev arm64 3.11.0-12.19 [907 kB] Get:16 http://archive-team.internal/bootstrap/arm64/ saucy/main libgcc-4.8-dev arm64 4.8.1-10ubuntu7 [178 kB] Get:17 http://archive-team.internal/bootstrap/arm64/ saucy/main libstdc++-4.8-dev arm64 4.8.1-10ubuntu7 [1753 kB] Get:18 http://archive-team.internal/bootstrap/arm64/ saucy/main libstdc++6 arm64 4.8.1-10ubuntu7 [290 kB] Get:19 http://archive-team.internal/bootstrap/arm64/ saucy/main libc-bin arm64 2.17-93ubuntu3 [1051 kB] Get:20 http://archive-team.internal/bootstrap/arm64/ saucy/main libc6 arm64 2.17-93ubuntu3 [4021 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main libdb5.1 arm64 5.1.29-7 [626 kB] Get:22 http://archive-team.internal/bootstrap/arm64/ saucy/main multiarch-support arm64 2.17-93ubuntu3 [4482 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.2 MB in 5s (5554 kB/s) (Reading database ... 11909 files and directories currently installed.) Preparing to replace libdbus-1-3:arm64 1.6.12-0ubuntu8 (using .../libdbus-1-3_1.6.12-0ubuntu10_arm64.deb) ... Unpacking replacement libdbus-1-3:arm64 ... Preparing to replace udev 204-0ubuntu15 (using .../udev_204-0ubuntu16_arm64.deb) ... Adding 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libudev1:arm64 204-0ubuntu15 (using .../libudev1_204-0ubuntu16_arm64.deb) ... Unpacking replacement libudev1:arm64 ... Preparing to replace mountall 2.51 (using .../mountall_2.52_arm64.deb) ... Unpacking replacement mountall ... Preparing to replace upstart 1.10-0ubuntu6 (using .../upstart_1.10-0ubuntu7_arm64.deb) ... Unpacking replacement upstart ... Preparing to replace libc6-dev:arm64 2.17-93ubuntu1 (using .../libc6-dev_2.17-93ubuntu3_arm64.deb) ... Unpacking replacement libc6-dev:arm64 ... Preparing to replace libc-dev-bin 2.17-93ubuntu1 (using .../libc-dev-bin_2.17-93ubuntu3_arm64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace linux-libc-dev:arm64 3.10.0-3.12 (using .../linux-libc-dev_3.11.0-12.19_arm64.deb) ... Unpacking replacement linux-libc-dev:arm64 ... Preparing to replace gcc-4.8-base:arm64 4.8.1-10ubuntu6 (using .../gcc-4.8-base_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement gcc-4.8-base:arm64 ... Setting up gcc-4.8-base:arm64 (4.8.1-10ubuntu7) ... (Reading database ... 11913 files and directories currently installed.) Preparing to replace libgcc1:arm64 1:4.8.1-10ubuntu6 (using .../libgcc1_1%3a4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement libgcc1:arm64 ... Preparing to replace libc6:arm64 2.17-93ubuntu1 (using .../libc6_2.17-93ubuntu3_arm64.deb) ... Unpacking replacement libc6:arm64 ... Setting up libgcc1:arm64 (1:4.8.1-10ubuntu7) ... Setting up libc6:arm64 (2.17-93ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11913 files and directories currently installed.) Preparing to replace libgomp1:arm64 4.8.1-10ubuntu6 (using .../libgomp1_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement libgomp1:arm64 ... Preparing to replace libatomic1:arm64 4.8.1-10ubuntu6 (using .../libatomic1_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement libatomic1:arm64 ... Preparing to replace cpp-4.8 4.8.1-10ubuntu6 (using .../cpp-4.8_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace g++-4.8 4.8.1-10ubuntu6 (using .../g++-4.8_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.1-10ubuntu6 (using .../gcc-4.8_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:arm64 4.8.1-10ubuntu6 (using .../libgcc-4.8-dev_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement libgcc-4.8-dev:arm64 ... Preparing to replace libstdc++-4.8-dev:arm64 4.8.1-10ubuntu6 (using .../libstdc++-4.8-dev_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement libstdc++-4.8-dev:arm64 ... Preparing to replace libstdc++6:arm64 4.8.1-10ubuntu6 (using .../libstdc++6_4.8.1-10ubuntu7_arm64.deb) ... Unpacking replacement libstdc++6:arm64 ... Setting up libstdc++6:arm64 (4.8.1-10ubuntu7) ... Processing triggers for libc-bin ... (Reading database ... 11948 files and directories currently installed.) Preparing to replace libc-bin 2.17-93ubuntu1 (using .../libc-bin_2.17-93ubuntu3_arm64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.17-93ubuntu3) ... (Reading database ... 11947 files and directories currently installed.) Preparing to replace libdb5.1:arm64 5.1.29-5ubuntu8 (using .../libdb5.1_5.1.29-7_arm64.deb) ... Unpacking replacement libdb5.1:arm64 ... Setting up libdb5.1:arm64 (5.1.29-7) ... Processing triggers for libc-bin ... (Reading database ... 11947 files and directories currently installed.) Preparing to replace multiarch-support 2.17-93ubuntu1 (using .../multiarch-support_2.17-93ubuntu3_arm64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.17-93ubuntu3) ... Setting up libdbus-1-3:arm64 (1.6.12-0ubuntu10) ... Setting up libudev1:arm64 (204-0ubuntu16) ... Setting up udev (204-0ubuntu16) ... invoke-rc.d: policy-rc.d denied execution of restart. Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up mountall (2.52) ... Installing new version of config file /etc/init/mountall.conf ... Setting up upstart (1.10-0ubuntu7) ... Setting up libc-dev-bin (2.17-93ubuntu3) ... Setting up linux-libc-dev:arm64 (3.11.0-12.19) ... Setting up libc6-dev:arm64 (2.17-93ubuntu3) ... Setting up libgomp1:arm64 (4.8.1-10ubuntu7) ... Setting up libatomic1:arm64 (4.8.1-10ubuntu7) ... Setting up cpp-4.8 (4.8.1-10ubuntu7) ... Setting up libgcc-4.8-dev:arm64 (4.8.1-10ubuntu7) ... Setting up gcc-4.8 (4.8.1-10ubuntu7) ... Setting up libstdc++-4.8-dev:arm64 (4.8.1-10ubuntu7) ... Setting up g++-4.8 (4.8.1-10ubuntu7) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-4960217', 'arm64', 'saucy', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'bedtools_2.17.0-1.dsc'] Initiating build PACKAGEBUILD-4960217 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-mustang_sw_1.07.04-Alpha #1 SMP Sat Sep 14 09:50:58 MDT 2013 aarch64 Automatic build of bedtools_2.17.0-1 on magic by sbuild/arm64 1.170.5 Build started at 20131011-0750 ****************************************************************************** bedtools_2.17.0-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: cdbs, debhelper (>= 9), quilt, python, zlib1g-dev Checking for already installed source dependencies... cdbs: missing debhelper: missing quilt: missing python: missing zlib1g-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install cdbs debhelper quilt python zlib1g-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof autoconf automake autotools-dev bsdmainutils ca-certificates dh-apparmor dh-python dh-translations diffstat file gettext gettext-base groff-base intltool intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libencode-locale-perl libexpat1 libffi6 libfile-listing-perl libgettextpo-dev libgettextpo0 libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libssl1.0.0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase openssl po-debconf python-minimal python-scour python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal Suggested packages: autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make gettext-doc groff libdata-dump-perl libcrypt-ssleay-perl libauthen-ntlm-perl less www-browser libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support python3-doc python3-tk python3.3-doc procmail graphviz default-mta mail-transport-agent Recommended packages: curl wget lynx-cur libglib2.0-data shared-mime-info libhtml-format-perl libio-socket-inet6-perl libio-socket-ip-perl libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autoconf automake autotools-dev bsdmainutils ca-certificates cdbs debhelper dh-apparmor dh-python dh-translations diffstat file gettext gettext-base groff-base intltool intltool-debian libasprintf-dev libasprintf0c2 libcroco3 libencode-locale-perl libexpat1 libffi6 libfile-listing-perl libgettextpo-dev libgettextpo0 libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libssl1.0.0 libunistring0 liburi-perl libwww-perl libwww-robotrules-perl libxml-parser-perl libxml2 m4 man-db mime-support netbase openssl po-debconf python python-minimal python-scour python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal quilt zlib1g-dev 0 upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 20.4 MB of archives. After this operation, 69.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libssl1.0.0 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db libpython2.7-minimal python2.7-minimal libcroco3 libunistring0 libgettextpo0 libsigsegv2 python3.3 python3-minimal libpython3-stdlib python3 dh-python file netbase openssl ca-certificates gettext-base libpython2.7-stdlib libpython-stdlib python2.7 python-minimal python m4 autoconf autotools-dev automake libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper liburi-perl libencode-locale-perl libhttp-date-perl libfile-listing-perl libhtml-tagset-perl libhtml-parser-perl libhtml-tree-perl libio-html-perl liblwp-mediatypes-perl libhttp-message-perl libhttp-cookies-perl libhttp-negotiate-perl libnet-ssleay-perl libio-socket-ssl-perl libnet-http-perl liblwp-protocol-https-perl libwww-robotrules-perl libwww-perl libxml-parser-perl intltool dh-translations python-scour cdbs diffstat quilt zlib1g-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 arm64 2.1.0-4 [114 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 arm64 3.0.13-4 [19.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 arm64 5.11-2ubuntu4 [163 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libssl1.0.0 arm64 1.0.1e-3ubuntu1 [860 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-minimal arm64 3.3.2-7ubuntu3 [609 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-stdlib arm64 3.3.2-7ubuntu3 [2568 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main python3.3-minimal arm64 3.3.2-7ubuntu3 [1431 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 arm64 0.18.1.1-10ubuntu3 [6816 B] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 arm64 2.38.0-1ubuntu1 [824 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 arm64 1.2.4-1 [24.5 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 arm64 2.9.1+dfsg1-3ubuntu2 [588 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main groff-base arm64 1.22.2-3 [688 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main man-db arm64 2.6.5-2 [678 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-minimal arm64 2.7.5-8ubuntu3 [499 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main python2.7-minimal arm64 2.7.5-8ubuntu3 [1192 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 arm64 0.6.8-2 [64.9 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 arm64 0.9.3-5ubuntu1 [403 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 arm64 0.18.1.1-10ubuntu3 [106 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main libsigsegv2 arm64 2.10-2 [14.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main python3.3 arm64 3.3.2-7ubuntu3 [129 kB] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main python3-minimal arm64 3.3.2-14ubuntu1 [26.4 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main libpython3-stdlib arm64 3.3.2-14ubuntu1 [8144 B] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main python3 arm64 3.3.2-14ubuntu1 [9144 B] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main dh-python all 1.20131003-1 [61.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main file arm64 5.11-2ubuntu4 [18.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main netbase all 5.1 [13.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main openssl arm64 1.0.1e-3ubuntu1 [519 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main ca-certificates all 20130610 [183 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base arm64 0.18.1.1-10ubuntu3 [54.7 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main libpython2.7-stdlib arm64 2.7.5-8ubuntu3 [2332 kB] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main libpython-stdlib arm64 2.7.5-5ubuntu1 [7770 B] Get:34 http://ftpmaster.internal/ubuntu/ saucy/main python2.7 arm64 2.7.5-8ubuntu3 [192 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/main python-minimal arm64 2.7.5-5ubuntu1 [31.5 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main python arm64 2.7.5-5ubuntu1 [173 kB] Get:37 http://ftpmaster.internal/ubuntu/ saucy/main m4 arm64 1.4.16-5 [193 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/main autoconf all 2.69-1.1 [573 kB] Get:39 http://ftpmaster.internal/ubuntu/ saucy/main autotools-dev all 20130810.1 [44.3 kB] Get:40 http://ftpmaster.internal/ubuntu/ saucy/main automake all 1:1.13.3-1.1ubuntu2 [573 kB] Get:41 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev arm64 0.18.1.1-10ubuntu3 [4586 B] Get:42 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev arm64 0.18.1.1-10ubuntu3 [147 kB] Get:43 http://ftpmaster.internal/ubuntu/ saucy/main gettext arm64 0.18.1.1-10ubuntu3 [994 kB] Get:44 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:45 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:46 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof all 2.8.0-0ubuntu30 [24.1 kB] Get:47 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu30 [7736 B] Get:48 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20130630ubuntu1 [629 kB] Get:49 http://ftpmaster.internal/ubuntu/ saucy/main liburi-perl all 1.60-1 [89.6 kB] Get:50 http://ftpmaster.internal/ubuntu/ saucy/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:51 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:52 http://ftpmaster.internal/ubuntu/ saucy/main libfile-listing-perl all 6.04-1 [9774 B] Get:53 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:54 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-parser-perl arm64 3.71-1 [95.3 kB] Get:55 http://ftpmaster.internal/ubuntu/ saucy/main libhtml-tree-perl all 5.02-1 [213 kB] Get:56 http://ftpmaster.internal/ubuntu/ saucy/main libio-html-perl all 1.00-1 [15.7 kB] Get:57 http://ftpmaster.internal/ubuntu/ saucy/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:58 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-message-perl all 6.06-1 [78.7 kB] Get:59 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:60 http://ftpmaster.internal/ubuntu/ saucy/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:61 http://ftpmaster.internal/ubuntu/ saucy/main libnet-ssleay-perl arm64 1.55-1 [312 kB] Get:62 http://ftpmaster.internal/ubuntu/ saucy/main libio-socket-ssl-perl all 1.76-2ubuntu1 [51.4 kB] Get:63 http://ftpmaster.internal/ubuntu/ saucy/main libnet-http-perl all 6.06-1 [24.2 kB] Get:64 http://ftpmaster.internal/ubuntu/ saucy/main liblwp-protocol-https-perl all 6.04-1 [7190 B] Get:65 http://ftpmaster.internal/ubuntu/ saucy/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:66 http://ftpmaster.internal/ubuntu/ saucy/main libwww-perl all 6.05-1 [155 kB] Get:67 http://ftpmaster.internal/ubuntu/ saucy/main libxml-parser-perl arm64 2.41-1build2 [279 kB] Get:68 http://ftpmaster.internal/ubuntu/ saucy/main intltool all 0.50.2-2 [52.0 kB] Get:69 http://ftpmaster.internal/ubuntu/ saucy/main dh-translations all 118 [21.9 kB] Get:70 http://ftpmaster.internal/ubuntu/ saucy/main python-scour all 0.26-3 [46.5 kB] Get:71 http://ftpmaster.internal/ubuntu/ saucy/main cdbs all 0.4.121ubuntu1 [48.2 kB] Get:72 http://ftpmaster.internal/ubuntu/ saucy/main diffstat arm64 1.56-1 [23.3 kB] Get:73 http://ftpmaster.internal/ubuntu/ saucy/main quilt all 0.60-9 [285 kB] Get:74 http://ftpmaster.internal/ubuntu/ saucy/main zlib1g-dev arm64 1:1.2.8.dfsg-1ubuntu1 [179 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.4 MB in 37s (547 kB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 11946 files and directories currently installed.) Unpacking libexpat1:arm64 (from .../libexpat1_2.1.0-4_arm64.deb) ... Selecting previously unselected package libffi6:arm64. Unpacking libffi6:arm64 (from .../libffi6_3.0.13-4_arm64.deb) ... Selecting previously unselected package libmagic1:arm64. Unpacking libmagic1:arm64 (from .../libmagic1_5.11-2ubuntu4_arm64.deb) ... Selecting previously unselected package libssl1.0.0:arm64. Unpacking libssl1.0.0:arm64 (from .../libssl1.0.0_1.0.1e-3ubuntu1_arm64.deb) ... Selecting previously unselected package libpython3.3-minimal:arm64. Unpacking libpython3.3-minimal:arm64 (from .../libpython3.3-minimal_3.3.2-7ubuntu3_arm64.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:arm64. Unpacking libpython3.3-stdlib:arm64 (from .../libpython3.3-stdlib_3.3.2-7ubuntu3_arm64.deb) ... 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Unpacking zlib1g-dev:arm64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_arm64.deb) ... Setting up libexpat1:arm64 (2.1.0-4) ... Setting up libffi6:arm64 (3.0.13-4) ... Setting up libmagic1:arm64 (5.11-2ubuntu4) ... Setting up libssl1.0.0:arm64 (1.0.1e-3ubuntu1) ... Setting up libpython3.3-minimal:arm64 (3.3.2-7ubuntu3) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:arm64 (3.3.2-7ubuntu3) ... Setting up python3.3-minimal (3.3.2-7ubuntu3) ... Setting up libasprintf0c2:arm64 (0.18.1.1-10ubuntu3) ... Setting up libglib2.0-0:arm64 (2.38.0-1ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.2.4-1) ... Setting up libxml2:arm64 (2.9.1+dfsg1-3ubuntu2) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-minimal:arm64 (2.7.5-8ubuntu3) ... Setting up python2.7-minimal (2.7.5-8ubuntu3) ... Linking and byte-compiling packages for runtime python2.7... Setting up libcroco3:arm64 (0.6.8-2) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu1) ... Setting up libgettextpo0:arm64 (0.18.1.1-10ubuntu3) ... Setting up libsigsegv2:arm64 (2.10-2) ... Setting up python3.3 (3.3.2-7ubuntu3) ... Setting up python3-minimal (3.3.2-14ubuntu1) ... Setting up libpython3-stdlib:arm64 (3.3.2-14ubuntu1) ... Setting up file (5.11-2ubuntu4) ... Setting up netbase (5.1) ... Setting up openssl (1.0.1e-3ubuntu1) ... Setting up ca-certificates (20130610) ... Setting up gettext-base (0.18.1.1-10ubuntu3) ... Setting up libpython2.7-stdlib:arm64 (2.7.5-8ubuntu3) ... Setting up libpython-stdlib:arm64 (2.7.5-5ubuntu1) ... Setting up python2.7 (2.7.5-8ubuntu3) ... Setting up python-minimal (2.7.5-5ubuntu1) ... Setting up python (2.7.5-5ubuntu1) ... Setting up m4 (1.4.16-5) ... Setting up autoconf (2.69-1.1) ... Setting up autotools-dev (20130810.1) ... Setting up automake (1:1.13.3-1.1ubuntu2) ... update-alternatives: using /usr/bin/automake-1.13 to provide /usr/bin/automake (automake) in auto mode Setting up libasprintf-dev:arm64 (0.18.1.1-10ubuntu3) ... Setting up libgettextpo-dev:arm64 (0.18.1.1-10ubuntu3) ... Setting up gettext (0.18.1.1-10ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1) ... Setting up libhtml-tree-perl (5.02-1) ... Setting up libio-html-perl (1.00-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.55-1) ... Setting up libio-socket-ssl-perl (1.76-2ubuntu1) ... Setting up libnet-http-perl (6.06-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up python-scour (0.26-3) ... Setting up diffstat (1.56-1) ... Setting up quilt (0.60-9) ... Setting up zlib1g-dev:arm64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up python3 (3.3.2-14ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20131003-1) ... Setting up apparmor-easyprof (2.8.0-0ubuntu30) ... Setting up dh-apparmor (2.8.0-0ubuntu30) ... Setting up debhelper (9.20130630ubuntu1) ... Setting up liblwp-protocol-https-perl (6.04-1) ... Setting up libwww-perl (6.05-1) ... Setting up libxml-parser-perl (2.41-1build2) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (118) ... Setting up cdbs (0.4.121ubuntu1) ... Processing triggers for libc-bin ... Processing triggers for ca-certificates ... Updating certificates in /etc/ssl/certs... 157 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu3 make_3.81-8.2ubuntu3 dpkg-dev_1.16.12ubuntu1 gcc-4.8_4.8.1-10ubuntu7 g++-4.8_4.8.1-10ubuntu7 binutils_2.23.52.20130913-0ubuntu1 libstdc++-4.8-dev_4.8.1-10ubuntu7 libstdc++6_4.8.1-10ubuntu7 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Sun Nov 4 09:07:58 2012 UTC using RSA key ID 2295D502 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc dpkg-source: info: extracting bedtools in bedtools-2.17.0 dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz dpkg-source: info: applying gzstream.h.patch dpkg-buildpackage: source package bedtools dpkg-buildpackage: source version 2.17.0-1 dpkg-source --before-build bedtools-2.17.0 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" -k clean make[1]: Entering directory `/build/buildd/bedtools-2.17.0' * Cleaning-up BamTools API * Cleaning up. make[1]: Leaving directory `/build/buildd/bedtools-2.17.0' dh_clean rm -f debian/bedtools.substvars rm -f debian/bedtools.*.debhelper rm -rf debian/bedtools/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} \; \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \) rm -f *-stamp /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/bedtools-2.17.0' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/bedtools-2.17.0' if [ -d "." ]; then \ cd . && QUILT_PATCHES=/build/buildd/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \ fi Removing patch gzstream.h.patch Restoring src/utils/gzstream/gzstream.C No patches applied rm -rf ./.pc rm -f debian/stamp-patch* debian/rules build-arch test -x debian/rules mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable /usr/bin/make -f debian/rules reverse-config make[1]: Entering directory `/build/buildd/bedtools-2.17.0' make[1]: Nothing to be done for `reverse-config'. make[1]: Leaving directory `/build/buildd/bedtools-2.17.0' cd . && QUILT_PATCHES=/build/buildd/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2 Applying patch gzstream.h.patch patching file src/utils/gzstream/gzstream.C Now at patch gzstream.h.patch touch debian/stamp-patched /usr/bin/make -f debian/rules update-config make[1]: Entering directory `/build/buildd/bedtools-2.17.0' make[1]: Nothing to be done for `update-config'. make[1]: Leaving directory `/build/buildd/bedtools-2.17.0' /usr/bin/make -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro" make[1]: Entering directory `/build/buildd/bedtools-2.17.0' Building BEDTools: ========================================================= DETECTED_VERSION = v2.17.0 CURRENT_VERSION = Updating version file. * Creating BamTools API - Building in src/utils/bedFile * compiling bedFile.cpp - Building in src/utils/version * compiling version.cpp - Building in src/utils/bedGraphFile * compiling bedGraphFile.cpp - Building in src/utils/chromsweep * compiling chromsweep.cpp - Building in src/utils/gzstream g++ -g -O2 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I. - Building in src/utils/fileType * compiling fileType.cpp - Building in src/utils/bedFilePE * compiling bedFilePE.cpp - Building in src/utils/sequenceUtilities * compiling sequenceUtils.cpp - Building in src/utils/tabFile * compiling tabFile.cpp - Building in src/utils/BamTools * compiling BamAlignment.cpp * compiling BamMultiReader.cpp * compiling BamReader.cpp * compiling BamWriter.cpp * compiling SamHeader.cpp * compiling SamProgram.cpp * compiling SamProgramChain.cpp * compiling SamReadGroup.cpp * compiling SamReadGroupDictionary.cpp * compiling SamSequence.cpp * compiling SamSequenceDictionary.cpp * compiling BamHeader_p.cpp * compiling BamMultiReader_p.cpp * compiling BamRandomAccessController_p.cpp * compiling BamReader_p.cpp * compiling BamWriter_p.cpp * compiling BamIndexFactory_p.cpp * compiling BamStandardIndex_p.cpp src/api/internal/index/BamStandardIndex_p.cpp: In member function 'void BamTools::Internal::BamStandardIndex::WriteLinearOffsets(const int&, BamTools::Internal::BaiLinearOffsetVector&)': src/api/internal/index/BamStandardIndex_p.cpp:958:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( numBytesWritten != (sizeof(offsetCount) + linearOffsets.size()*sizeof(uint64_t)) ) ^ * compiling BamToolsIndex_p.cpp * compiling BamDeviceFactory_p.cpp * compiling BamFile_p.cpp * compiling BamFtp_p.cpp * compiling BamHttp_p.cpp src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendRequest(size_t)': src/api/internal/io/BamHttp_p.cpp:396:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] return ( WriteToSocket(requestHeader.c_str(), headerSize) == headerSize ); ^ * compiling BamPipe_p.cpp * compiling BgzfStream_p.cpp * compiling ByteArray_p.cpp * compiling HostAddress_p.cpp * compiling HostInfo_p.cpp * compiling HttpHeader_p.cpp * compiling ILocalIODevice_p.cpp * compiling RollingBuffer_p.cpp * compiling TcpSocketEngine_p.cpp * compiling TcpSocketEngine_unix_p.cpp * compiling TcpSocket_p.cpp * compiling SamFormatParser_p.cpp * compiling SamFormatPrinter_p.cpp * compiling SamHeaderValidator_p.cpp * compiling BamException_p.cpp * linking lib/libbamtools.a ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api/internal/index/BamIndexFactory_p.o src/api/internal/index/BamStandardIndex_p.o src/api/internal/index/BamToolsIndex_p.o src/api/internal/io/BamDeviceFactory_p.o src/api/internal/io/BamFile_p.o src/api/internal/io/BamFtp_p.o src/api/internal/io/BamHttp_p.o src/api/internal/io/BamPipe_p.o src/api/internal/io/BgzfStream_p.o src/api/internal/io/ByteArray_p.o src/api/internal/io/HostAddress_p.o src/api/internal/io/HostInfo_p.o src/api/internal/io/HttpHeader_p.o src/api/internal/io/ILocalIODevice_p.o src/api/internal/io/RollingBuffer_p.o src/api/internal/io/TcpSocketEngine_p.o src/api/internal/io/TcpSocketEngine_unix_p.o src/api/internal/io/TcpSocket_p.o src/api/internal/sam/SamFormatParser_p.o src/api/internal/sam/SamFormatPrinter_p.o src/api/internal/sam/SamHeaderValidator_p.o src/api/internal/utils/BamException_p.o ranlib lib/libbamtools.a - Building in src/utils/BamTools-Ancillary * compiling BamAncillary.cpp * compiling BamAncillary.cpp - Building in src/utils/BlockedIntervals * compiling BlockedIntervals.cpp * compiling BlockedIntervals.cpp - Building in src/utils/Fasta * compiling Fasta.cpp Fasta.cpp: In member function 'void FastaIndexEntry::clear()': Fasta.cpp:28:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] length = NULL; ^ Fasta.cpp:31:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] line_blen = NULL; ^ Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] line_len = NULL; ^ Fasta.cpp: In member function 'std::string FastaReference::getSequence(std::string)': Fasta.cpp:274:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(seq, sizeof(char), seqlen, file); ^ Fasta.cpp: In member function 'std::string FastaReference::getSubSequence(std::string, int, int)': Fasta.cpp:316:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(seq, sizeof(char), (off_t) seqlen, file); ^ * compiling Fasta.cpp Fasta.cpp: In member function 'void FastaIndexEntry::clear()': Fasta.cpp:28:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] length = NULL; ^ Fasta.cpp:31:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] line_blen = NULL; ^ Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null] line_len = NULL; ^ Fasta.cpp: In member function 'std::string FastaReference::getSequence(std::string)': Fasta.cpp:274:47: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(seq, sizeof(char), seqlen, file); ^ Fasta.cpp: In member function 'std::string FastaReference::getSubSequence(std::string, int, int)': Fasta.cpp:316:55: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(seq, sizeof(char), (off_t) seqlen, file); ^ * compiling split.cpp * compiling split.cpp - Building in src/utils/VectorOps * compiling VectorOps.cpp - Building in src/utils/genomeFile * compiling genomeFile.cpp genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()': genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable] long c2; ^ - Building in src/annotateBed * compiling annotateMain.cpp annotateMain.cpp: In function 'int annotate_main(int, char**)': annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable] bool haveTitles = false; ^ * compiling annotateBed.cpp - Building in src/bamToBed * compiling bamToBed.cpp bamToBed.cpp: In function 'int bamtobed_main(int, char**)': bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable] bool useAlignmentScore = false; ^ - Building in src/bamToFastq * compiling bamToFastqMain.cpp bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)': bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable] bool haveFastq2 = false; ^ * compiling bamToFastq.cpp - Building in src/bedToBam * compiling bedToBam.cpp bedToBam.cpp: In function 'int bedtobam_main(int, char**)': bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable] bool haveMapQual = false; ^ - Building in src/bedpeToBam * compiling bedpeToBam.cpp bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)': bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable] bool haveMapQual = false; ^ - Building in src/bedToIgv * compiling bedToIgv.cpp - Building in src/bed12ToBed6 * compiling bed12ToBed6.cpp - Building in src/closestBed * compiling closestMain.cpp * compiling closestBed.cpp - Building in src/clusterBed * compiling clusterMain.cpp clusterMain.cpp: In function 'int cluster_main(int, char**)': clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable] bool haveMaxDistance = false; ^ * compiling clusterBed.cpp - Building in src/complementBed * compiling complementMain.cpp * compiling complementBed.cpp - Building in src/coverageBed * compiling coverageMain.cpp * compiling coverageBed.cpp - Building in src/expand * compiling expand.cpp - Building in src/fastaFromBed * compiling fastaFromBedMain.cpp * compiling fastaFromBed.cpp - Building in src/flankBed * compiling flankBedMain.cpp * compiling flankBed.cpp - Building in src/genomeCoverageBed * compiling genomeCoverageMain.cpp * compiling genomeCoverageBed.cpp - Building in src/getOverlap * compiling getOverlap.cpp getOverlap.cpp: In function 'int getoverlap_main(int, char**)': getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable] bool haveColumns = false; ^ - Building in src/groupBy * compiling groupBy.cpp groupBy.cpp: In function 'int groupby_main(int, char**)': groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable] bool haveOps = true; ^ - Building in src/intersectBed * compiling intersectMain.cpp * compiling intersectBed.cpp - Building in src/jaccard * compiling jaccardMain.cpp * compiling jaccard.cpp - Building in src/linksBed * compiling linksMain.cpp * compiling linksBed.cpp - Building in src/maskFastaFromBed * compiling maskFastaFromBedMain.cpp * compiling maskFastaFromBed.cpp - Building in src/mapBed * compiling mapMain.cpp mapMain.cpp: In function 'int map_main(int, char**)': mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable] bool haveColumn = false; ^ mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable] bool haveOperation = false; ^ * compiling mapBed.cpp - Building in src/mergeBed * compiling mergeMain.cpp mergeMain.cpp: In function 'int merge_main(int, char**)': mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable] bool haveMaxDistance = false; ^ * compiling mergeBed.cpp - Building in src/multiBamCov * compiling multiBamCovMain.cpp multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)': multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable] bool haveBed = false; ^ multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable] bool haveBams = false; ^ multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] bool haveFraction = false; ^ * compiling multiBamCov.cpp - Building in src/multiIntersectBed * compiling multiIntersectBedMain.cpp multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)': multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable] bool haveFiles = false; ^ multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable] bool haveGenome = false; ^ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable] bool haveFiller = true; ^ * compiling multiIntersectBed.cpp - Building in src/nucBed * compiling nucBedMain.cpp * compiling nucBed.cpp - Building in src/pairToBed * compiling pairToBedMain.cpp pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)': pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] bool haveFraction = false; ^ * compiling pairToBed.cpp pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector&, const string&)': pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable] CHRPOS spanLength = 0; ^ pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)': pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable] int spanLength = 0; ^ - Building in src/pairToPair * compiling pairToPairMain.cpp pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)': pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] bool haveFraction = false; ^ * compiling pairToPair.cpp pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)': pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable] bool found1 = false; ^ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable] bool found2 = false; ^ - Building in src/randomBed * compiling randomBedMain.cpp * compiling randomBed.cpp - Building in src/shuffleBed * compiling shuffleBedMain.cpp * compiling shuffleBed.cpp - Building in src/slopBed * compiling slopBedMain.cpp * compiling slopBed.cpp - Building in src/sortBed * compiling sortMain.cpp * compiling sortBed.cpp - Building in src/subtractBed * compiling subtractMain.cpp subtractMain.cpp: In function 'int subtract_main(int, char**)': subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] bool haveFraction = false; ^ * compiling subtractBed.cpp - Building in src/tagBam * compiling tagBamMain.cpp tagBamMain.cpp: In function 'int tagbam_main(int, char**)': tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable] bool haveFraction = false; ^ * compiling tagBam.cpp - Building in src/unionBedGraphs * compiling unionBedGraphsMain.cpp unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)': unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable] bool haveFiles = false; ^ unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable] bool haveGenome = false; ^ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable] bool haveFiller = true; ^ * compiling unionBedGraphs.cpp - Building in src/windowBed * compiling windowMain.cpp * compiling windowBed.cpp - Building in src/windowMaker * compiling windowMakerMain.cpp * compiling windowMaker.cpp - Building main bedtools binary. done. - Creating executables for old CLI. done. make[1]: Leaving directory `/build/buildd/bedtools-2.17.0' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary-arch test -x debian/rules dh_testroot dh_prep rm -f debian/bedtools.substvars rm -f debian/bedtools.*.debhelper rm -rf debian/bedtools/ dh_installdirs -A install -d debian/bedtools mkdir -p "." /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable DEB_MAKE_CHECK_TARGET unset, not running checks DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target Adding cdbs dependencies to debian/bedtools.substvars dh_installdirs -pbedtools dh_installdocs -pbedtools install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools cp -a README.rst debian/bedtools/usr/share/doc/bedtools chown -R 0:0 debian/bedtools/usr/share/doc chmod -R go=rX debian/bedtools/usr/share/doc chmod -R u\+rw debian/bedtools/usr/share/doc install -g 0 -o 0 -m 644 -p debian/copyright debian/bedtools/usr/share/doc/bedtools/copyright dh_installexamples -pbedtools dh_installman -pbedtools dh_installinfo -pbedtools dh_installmenu -pbedtools dh_installcron -pbedtools dh_installinit -pbedtools dh_installdebconf -pbedtools install -o 0 -g 0 -d debian/bedtools/DEBIAN dh_installemacsen -pbedtools dh_installcatalogs -pbedtools grep -s -v '^misc:Depends=' debian/bedtools.substvars > debian/bedtools.substvars.new || true mv debian/bedtools.substvars.new debian/bedtools.substvars dh_installpam -pbedtools dh_installlogrotate -pbedtools dh_installlogcheck -pbedtools dh_installchangelogs -pbedtools RELEASE_HISTORY install -o 0 -g 0 -p -m644 debian/changelog debian/bedtools/usr/share/doc/bedtools/changelog.Debian install -o 0 -g 0 -p -m644 RELEASE_HISTORY debian/bedtools/usr/share/doc/bedtools/changelog dh_installudev -pbedtools dh_lintian -pbedtools dh_bugfiles -pbedtools dh_install -pbedtools install -d debian/bedtools/usr/bin cp -a ./bin/annotateBed debian/bedtools/usr/bin/ cp -a ./bin/bamToBed debian/bedtools/usr/bin/ cp -a ./bin/bamToFastq debian/bedtools/usr/bin/ cp -a ./bin/bed12ToBed6 debian/bedtools/usr/bin/ cp -a ./bin/bedpeToBam debian/bedtools/usr/bin/ cp -a ./bin/bedToBam debian/bedtools/usr/bin/ cp -a ./bin/bedToIgv debian/bedtools/usr/bin/ cp -a ./bin/bedtools debian/bedtools/usr/bin/ cp -a ./bin/closestBed debian/bedtools/usr/bin/ cp -a ./bin/clusterBed debian/bedtools/usr/bin/ cp -a ./bin/complementBed debian/bedtools/usr/bin/ cp -a ./bin/coverageBed debian/bedtools/usr/bin/ cp -a ./bin/expandCols debian/bedtools/usr/bin/ cp -a ./bin/fastaFromBed debian/bedtools/usr/bin/ cp -a ./bin/flankBed debian/bedtools/usr/bin/ cp -a ./bin/genomeCoverageBed debian/bedtools/usr/bin/ cp -a ./bin/getOverlap debian/bedtools/usr/bin/ cp -a ./bin/groupBy debian/bedtools/usr/bin/ cp -a ./bin/intersectBed debian/bedtools/usr/bin/ cp -a ./bin/linksBed debian/bedtools/usr/bin/ cp -a ./bin/mapBed debian/bedtools/usr/bin/ cp -a ./bin/maskFastaFromBed debian/bedtools/usr/bin/ cp -a ./bin/mergeBed debian/bedtools/usr/bin/ cp -a ./bin/multiBamCov debian/bedtools/usr/bin/ cp -a ./bin/multiIntersectBed debian/bedtools/usr/bin/ cp -a ./bin/nucBed debian/bedtools/usr/bin/ cp -a ./bin/pairToBed debian/bedtools/usr/bin/ cp -a ./bin/pairToPair debian/bedtools/usr/bin/ cp -a ./bin/randomBed debian/bedtools/usr/bin/ cp -a ./bin/shuffleBed debian/bedtools/usr/bin/ cp -a ./bin/slopBed debian/bedtools/usr/bin/ cp -a ./bin/sortBed debian/bedtools/usr/bin/ cp -a ./bin/subtractBed debian/bedtools/usr/bin/ cp -a ./bin/tagBam debian/bedtools/usr/bin/ cp -a ./bin/unionBedGraphs debian/bedtools/usr/bin/ cp -a ./bin/windowBed debian/bedtools/usr/bin/ cp -a ./bin/windowMaker debian/bedtools/usr/bin/ install -d debian/bedtools/usr/share/bedtools cp -a ./genomes debian/bedtools/usr/share/bedtools/ install -d debian/bedtools/usr/share/bedtools/test cp -a ./test/bamtobed debian/bedtools/usr/share/bedtools/test/ cp -a ./test/bed12tobed6 debian/bedtools/usr/share/bedtools/test/ cp -a ./test/closest debian/bedtools/usr/share/bedtools/test/ cp -a ./test/cluster debian/bedtools/usr/share/bedtools/test/ cp -a ./test/coverage debian/bedtools/usr/share/bedtools/test/ cp -a ./test/expand debian/bedtools/usr/share/bedtools/test/ cp -a ./test/flank debian/bedtools/usr/share/bedtools/test/ cp -a ./test/general debian/bedtools/usr/share/bedtools/test/ cp -a ./test/genomecov debian/bedtools/usr/share/bedtools/test/ cp -a ./test/getfasta debian/bedtools/usr/share/bedtools/test/ cp -a ./test/groupBy debian/bedtools/usr/share/bedtools/test/ cp -a ./test/intersect debian/bedtools/usr/share/bedtools/test/ cp -a ./test/jaccard debian/bedtools/usr/share/bedtools/test/ cp -a ./test/map debian/bedtools/usr/share/bedtools/test/ cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/ cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/ cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/ cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/ cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/ install -d debian/bedtools/etc/bash_completion.d cp -a ./debian/bash_completion/bedtools debian/bedtools/etc/bash_completion.d/ dh_link -pbedtools dh_installmime -pbedtools dh_installgsettings -pbedtools dh_strip -pbedtools dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: bedtools dh_strip debug symbol extraction: packages to act on: bedtools dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `bedtools-dbgsym' in `../bedtools-dbgsym_2.17.0-1_arm64.ddeb'. strip --remove-section=.comment --remove-section=.note debian/bedtools/usr/bin/bedtools dh_compress -pbedtools -X test cd debian/bedtools chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog cd '/build/buildd/bedtools-2.17.0' dh_fixperms -pbedtools find debian/bedtools -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/bedtools ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/bedtools/usr/share/doc -type f ! -regex 'debian/bedtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644 find debian/bedtools/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755 find debian/bedtools/usr/share/man debian/bedtools/usr/man/ debian/bedtools/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/bedtools -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/bedtools/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/bedtools/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644 find debian/bedtools -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644 find debian/bedtools/usr/lib/perl5 debian/bedtools/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X find debian/bedtools/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x find debian/bedtools/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w dh_makeshlibs -pbedtools rm -f debian/bedtools/DEBIAN/shlibs rm /build/buildd/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package. dh_installdeb -pbedtools find debian/bedtools/etc -type f -printf '/etc/%P ' >> debian/bedtools/DEBIAN/conffiles chmod 644 debian/bedtools/DEBIAN/conffiles dh_perl -pbedtools dh_shlibdeps -pbedtools dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools dh_gencontrol -pbedtools echo misc:Depends= >> debian/bedtools.substvars dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe chmod 644 debian/bedtools/DEBIAN/control chown 0:0 debian/bedtools/DEBIAN/control # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pbedtools ; fi dh_md5sums -pbedtools (cd debian/bedtools >/dev/null ; find . -type f ! -path "./etc/bash_completion.d/bedtools" ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null chmod 644 debian/bedtools/DEBIAN/md5sums chown 0:0 debian/bedtools/DEBIAN/md5sums dh_builddeb -pbedtools -- -Z xz dpkg-deb -Z xz --build debian/bedtools .. INFO: pkgstriptranslations version 118 pkgstriptranslations: processing bedtools (in debian/bedtools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bedtools/DEBIAN/control, package bedtools, directory debian/bedtools .. removing usr/share/doc/bedtools/changelog.gz pkgstripfiles: Truncating usr/share/doc/bedtools/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package bedtools took 0 s dpkg-deb: warning: 'debian/bedtools/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../bedtools_2.17.0-1_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build bedtools-2.17.0 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131011-0759 Publishing debug debs. chroot-autobuild/build/buildd/bedtools_2.17.0-1_arm64.deb: new debian package, version 2.0. size 420278 bytes: control archive=4126 bytes. 32 bytes, 1 lines conffiles 891 bytes, 19 lines control 9535 bytes, 131 lines md5sums Package: bedtools Version: 2.17.0-1 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1557 Depends: libc6 (>= 2.17), libgcc1, libstdc++6, zlib1g (>= 1:1.1.4) Suggests: filo Section: science Priority: optional Homepage: http://code.google.com/p/bedtools/ Description: suite of utilities for comparing genomic features The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together. . The groupBy utility is distribued in the filo package. chroot-autobuild/build/buildd/bedtools_2.17.0-1_arm64.deb: drwxr-xr-x root/root 0 2013-10-11 07:58 ./ drwxr-xr-x root/root 0 2013-10-11 07:58 ./usr/ drwxr-xr-x root/root 0 2013-10-11 07:59 ./usr/bin/ -rwxr-xr-x root/root 37 2013-10-11 07:58 ./usr/bin/slopBed -rwxr-xr-x root/root 42 2013-10-11 07:58 ./usr/bin/genomeCoverageBed -rwxr-xr-x root/root 41 2013-10-11 07:58 ./usr/bin/bedToBam -rwxr-xr-x root/root 44 2013-10-11 07:58 ./usr/bin/windowMaker -rwxr-xr-x root/root 42 2013-10-11 07:58 ./usr/bin/intersectBed -rwxr-xr-x root/root 42 2013-10-11 07:58 ./usr/bin/unionBedGraphs -rwxr-xr-x root/root 39 2013-10-11 07:58 ./usr/bin/windowBed -rwxr-xr-x root/root 41 2013-10-11 07:58 ./usr/bin/fastaFromBed -rwxr-xr-x root/root 43 2013-10-11 07:58 ./usr/bin/bamToFastq -rwxr-xr-x root/root 42 2013-10-11 07:58 ./usr/bin/maskFastaFromBed -rwxr-xr-x root/root 43 2013-10-11 07:58 ./usr/bin/pairToPair -rwxr-xr-x root/root 1388216 2013-10-11 07:58 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117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed drwxr-xr-x root/root 0 2013-10-11 07:51 ./usr/share/bedtools/genomes/ -rwxr-xr-x root/root 565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome -rwxr-xr-x root/root 856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome -rwxr-xr-x root/root 1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome -rwxr-xr-x root/root 585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome drwxr-xr-x root/root 0 2013-10-11 07:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-10-11 07:59 ./usr/share/doc/bedtools/ -rw-r--r-- root/root 1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst -rw-r--r-- root/root 903 2013-10-11 07:59 ./usr/share/doc/bedtools/changelog.Debian.gz -rw-r--r-- root/root 5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright drwxr-xr-x root/root 0 2013-10-11 07:58 ./etc/ drwxr-xr-x root/root 0 2013-10-11 07:58 ./etc/bash_completion.d/ -rw-r--r-- root/root 638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools bedtools_2.17.0-1_arm64.changes: Format: 1.8 Date: Sun, 04 Nov 2012 17:59:41 +0900 Source: bedtools Binary: bedtools Architecture: arm64 Version: 2.17.0-1 Distribution: saucy Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Charles Plessy Description: bedtools - suite of utilities for comparing genomic features Changes: bedtools (2.17.0-1) unstable; urgency=low . bb9012e Imported Upstream version 2.16.2. 9006b23 Imported Upstream version 2.17.0. 9112569 Documented BEDTools license as a whole. 325689c Removed Pre-Depends: dpkg (>= 1.15.6). a781b14 Conforms with Policy 3.9.4. 84b1167 Use Debhelper 9. 0bf572d Distribute the test suite. 422cd34 Bash completion for BEDTools. Checksums-Sha1: ef94c0c7a28a5e5fe42365995a25ee2f09c70e6f 420278 bedtools_2.17.0-1_arm64.deb Checksums-Sha256: 7b2080e56ce89c8cfea9155638f951dae6e6339a03650c0872261014d65173a6 420278 bedtools_2.17.0-1_arm64.deb Files: b8fef4c2d04c9b4c1259595347705b40 420278 science optional bedtools_2.17.0-1_arm64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131011-0759 Build needed 00:07:31, 140200k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-4960217'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-4960217/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-4960217'] Unmounting chroot for build PACKAGEBUILD-4960217... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-4960217'] Removing build PACKAGEBUILD-4960217