RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-044 4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:23:54 UTC 2017 aarch64 Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 12 Nov 02:57:06 ntpdate[1838]: adjust time server 10.211.37.1 offset 0.018801 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13625690 /home/buildd/filecache-default/b70461af4419c13dbae7acd6fe74d075a1a9550f Creating target for build PACKAGEBUILD-13625690 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13625690 Starting target for build PACKAGEBUILD-13625690 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13625690 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13625690 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13625690 Updating target for build PACKAGEBUILD-13625690 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf Packages [1025 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [541 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe armhf Packages [7972 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4844 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf Packages [165 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [87.1 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf Packages [749 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [428 kB] Fetched 16.3 MB in 9s (1637 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils binutils-arm-linux-gnueabihf binutils-common bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmount1 libnettle6 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libubsan0 libudev1 libuuid1 linux-libc-dev mount multiarch-support openssl perl perl-base perl-modules-5.26 pinentry-curses systemd systemd-sysv sysvinit-utils tzdata util-linux 89 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 51.5 MB of archives. After this operation, 2949 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu bionic/main armhf base-files armhf 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf bsdutils armhf 1:2.30.1-0ubuntu5 [55.3 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf coreutils armhf 8.26-3ubuntu4 [1111 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf debianutils armhf 4.8.3 [84.7 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf dpkg armhf 1.19.0.4ubuntu1 [1100 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main armhf libc6-dev armhf 2.26-0ubuntu2 [1900 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main armhf libc-dev-bin armhf 2.26-0ubuntu2 [60.1 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main armhf linux-libc-dev armhf 4.13.0-16.19 [934 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gcc-7-base armhf 7.2.0-13ubuntu1 [18.6 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgcc1 armhf 1:7.2.0-13ubuntu1 [37.1 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgomp1 armhf 7.2.0-13ubuntu1 [65.6 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libatomic1 armhf 7.2.0-13ubuntu1 [6304 B] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libasan4 armhf 7.2.0-13ubuntu1 [328 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libubsan0 armhf 7.2.0-13ubuntu1 [108 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libcilkrts5 armhf 7.2.0-13ubuntu1 [35.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf cpp-7 armhf 7.2.0-13ubuntu1 [5287 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libcc1-0 armhf 7.2.0-13ubuntu1 [32.3 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf g++-7 armhf 7.2.0-13ubuntu1 [6034 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf gcc-7 armhf 7.2.0-13ubuntu1 [5920 kB] Get:20 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http://ftpmaster.internal/ubuntu bionic-proposed/main armhf e2fslibs armhf 1.43.7-1 [145 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf e2fsprogs armhf 1.43.7-1 [477 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf findutils armhf 4.6.0+git+20170828-2 [277 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf perl-modules-5.26 all 5.26.1-2ubuntu1 [2760 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libperl5.26 armhf 5.26.1-2ubuntu1 [2878 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf perl armhf 5.26.1-2ubuntu1 [201 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf perl-base armhf 5.26.1-2ubuntu1 [1289 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libuuid1 armhf 2.30.1-0ubuntu5 [14.3 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libblkid1 armhf 2.30.1-0ubuntu5 [105 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libfdisk1 armhf 2.30.1-0ubuntu5 [143 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main armhf libpcre3 armhf 2:8.39-5ubuntu3 [209 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libselinux1 armhf 2.7-2 [59.1 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libmount1 armhf 2.30.1-0ubuntu5 [116 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libsmartcols1 armhf 2.30.1-0ubuntu5 [68.7 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf fdisk armhf 2.30.1-0ubuntu5 [96.2 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf util-linux armhf 2.30.1-0ubuntu5 [819 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main armhf base-passwd armhf 3.5.44 [45.9 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main armhf libc-bin armhf 2.26-0ubuntu2 [477 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main armhf sysvinit-utils armhf 2.88dsf-59.10ubuntu1 [17.2 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libudev1 armhf 235-2ubuntu2 [48.8 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libapt-pkg5.0 armhf 1.6~alpha4 [710 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgpg-error0 armhf 1.27-5 [32.4 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgcrypt20 armhf 1.7.9-2 [342 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main armhf gpgv armhf 2.1.15-1ubuntu8 [157 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main armhf libseccomp2 armhf 2.3.1-2.1ubuntu3 [29.9 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf apt armhf 1.6~alpha4 [1103 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf debconf all 1.5.64 [124 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libapparmor1 armhf 2.11.0-2ubuntu18 [24.6 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main armhf libcap2 armhf 1:2.25-1.1 [11.9 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf mount armhf 2.30.1-0ubuntu5 [104 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf systemd armhf 235-2ubuntu2 [2677 kB] Get:60 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libsystemd0 armhf 235-2ubuntu2 [178 kB] Get:61 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf systemd-sysv armhf 235-2ubuntu2 [12.4 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main armhf libcap-ng0 armhf 0.7.7-3.1 [9816 B] Get:63 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libcomerr2 armhf 1.43.7-1 [10.6 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage-common all 2.7-2 [6916 B] Get:65 http://ftpmaster.internal/ubuntu bionic/main armhf libsemanage1 armhf 2.7-2 [72.3 kB] Get:66 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libss2 armhf 1.43.7-1 [9376 B] Get:67 http://ftpmaster.internal/ubuntu bionic/main armhf libnettle6 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2017c-1 [188 kB] Get:78 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgssapi-krb5-2 armhf 1.15.2-2 [99.2 kB] Get:79 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libkrb5-3 armhf 1.15.2-2 [231 kB] Get:80 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libkrb5support0 armhf 1.15.2-2 [27.4 kB] Get:81 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libk5crypto3 armhf 1.15.2-2 [83.5 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main armhf libkeyutils1 armhf 1.5.9-9.1ubuntu1 [8560 B] Get:83 http://ftpmaster.internal/ubuntu bionic/main armhf libpng16-16 armhf 1.6.34-1 [159 kB] Get:84 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf apt-transport-https all 1.6~alpha4 [1692 B] Get:85 http://ftpmaster.internal/ubuntu bionic/main armhf dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main armhf libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main 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Setting up libgssapi-krb5-2:armhf (1.15.2-2) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Setting up libcurl3-gnutls:armhf (7.55.1-1ubuntu2.1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13625690 armhf bionic-proposed -c chroot:build-PACKAGEBUILD-13625690 --arch=armhf --dist=bionic-proposed --nolog bio-eagle_2.3.5-1build1.dsc Initiating build PACKAGEBUILD-13625690 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-98-generic #121-Ubuntu SMP Tue Oct 10 14:23:54 UTC 2017 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-044.buildd +==============================================================================+ | bio-eagle 2.3.5-1build1 (armhf) 12 Nov 2017 02:59 | +==============================================================================+ Package: bio-eagle Version: 2.3.5-1build1 Source Version: 2.3.5-1build1 Distribution: bionic-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/bio-eagle-9L_4ht/bio-eagle-2.3.5' with '<>' I: NOTICE: Log filtering will replace 'build/bio-eagle-9L_4ht' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13625690/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bio-eagle_2.3.5-1build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-7TtJmd/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-7TtJmd/apt_archive ./ InRelease Get:2 copy:/<>/resolver-7TtJmd/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-7TtJmd/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-7TtJmd/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-7TtJmd/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (27.0 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-7TtJmd/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12456 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), libopenblas-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libhts-dev (>= 1.4), zlib1g-dev Filtered Build-Depends: debhelper (>= 10), libopenblas-dev, libboost-dev, libboost-iostreams-dev, libboost-program-options-dev, libhts-dev (>= 1.4), zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-bio-eagle-dummy' in '/<>/resolver-fTR6mP/apt_archive/sbuild-build-depends-bio-eagle-dummy.deb'. Ign:1 copy:/<>/resolver-fTR6mP/apt_archive ./ InRelease Get:2 copy:/<>/resolver-fTR6mP/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-fTR6mP/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-fTR6mP/apt_archive ./ Sources [261 B] Get:5 copy:/<>/resolver-fTR6mP/apt_archive ./ Packages [581 B] Fetched 2961 B in 0s (35.1 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install bio-eagle build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-dev libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-program-options-dev libboost-program-options1.65-dev libboost-program-options1.65.1 libboost-regex1.65-dev libboost-regex1.65.1 libboost1.65-dev libbsd0 libcroco3 libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libhts-dev libhts2 libicu-dev libicu60 liblzma-dev libmagic-mgc libmagic1 libopenblas-base libopenblas-dev libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf tabix zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.65-doc libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-context1.65-dev libboost-coroutine1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-fiber1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-serialization1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-test1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev icu-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libboost-dev libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-program-options-dev libboost-program-options1.65-dev libboost-program-options1.65.1 libboost-regex1.65-dev libboost-regex1.65.1 libboost1.65-dev libbsd0 libcroco3 libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libhts-dev libhts2 libicu-dev libicu60 liblzma-dev libmagic-mgc libmagic1 libopenblas-base libopenblas-dev libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-bio-eagle-dummy tabix zlib1g-dev 0 upgraded, 50 newly installed, 1 to remove and 0 not upgraded. Need to get 38.2 MB of archives. After this operation, 246 MB of additional disk space will be used. 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bionic-proposed/main armhf libicu60 armhf 60.1-1ubuntu2 [7798 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libxml2 armhf 2.9.4+dfsg1-5ubuntu2 [574 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main armhf gettext-base armhf 0.19.8.1-4ubuntu1 [45.4 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main armhf libsigsegv2 armhf 2.11-1 [12.6 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf autoconf all 2.69-11 [322 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf automake all 1:1.15.1-3ubuntu1 [509 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main armhf autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf dh-autoreconf all 14 [15.5 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main armhf libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main armhf dh-strip-nondeterminism all 0.040-1 [5196 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main armhf libcroco3 armhf 0.6.12-1 [69.7 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main armhf gettext armhf 0.19.8.1-4ubuntu1 [1014 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main armhf debhelper all 10.10.5ubuntu1 [876 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf icu-devtools armhf 60.1-1ubuntu2 [164 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libboost1.65-dev armhf 1.65.1+dfsg-0ubuntu4 [7217 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main armhf libboost-dev armhf 1.65.1.0ubuntu1 [3128 B] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libboost-regex1.65.1 armhf 1.65.1+dfsg-0ubuntu4 [209 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libicu-dev armhf 60.1-1ubuntu2 [8682 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf libboost-regex1.65-dev armhf 1.65.1+dfsg-0ubuntu4 [305 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libboost-iostreams1.65.1 armhf 1.65.1+dfsg-0ubuntu4 [26.2 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf libboost-iostreams1.65-dev armhf 1.65.1+dfsg-0ubuntu4 [37.8 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/universe armhf libboost-iostreams-dev armhf 1.65.1.0ubuntu1 [2916 B] Get:40 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libboost-program-options1.65.1 armhf 1.65.1+dfsg-0ubuntu4 [116 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libboost-program-options1.65-dev armhf 1.65.1+dfsg-0ubuntu4 [163 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main armhf libboost-program-options-dev armhf 1.65.1.0ubuntu1 [2940 B] Get:43 http://ftpmaster.internal/ubuntu bionic-proposed/main armhf libgfortran4 armhf 7.2.0-13ubuntu1 [200 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf libhts2 armhf 1.5-3 [245 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main armhf liblzma-dev armhf 5.2.2-1.3 [138 kB] Get:46 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf tabix armhf 1.5-3 [255 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/universe armhf libhts-dev armhf 1.5-3 [347 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/universe armhf libopenblas-base armhf 0.2.20+ds-4 [2063 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/universe armhf libopenblas-dev armhf 0.2.20+ds-4 [1980 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.2 MB in 4s (9136 kB/s) (Reading database ... 12456 files and directories currently installed.) 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Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up tabix (1.5-3) ... Setting up icu-devtools (60.1-1ubuntu2) ... Setting up liblzma-dev:armhf (5.2.2-1.3) ... Setting up libboost-program-options1.65.1:armhf (1.65.1+dfsg-0ubuntu4) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libboost1.65-dev:armhf (1.65.1+dfsg-0ubuntu4) ... Setting up libhts2:armhf (1.5-3) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libboost-regex1.65.1:armhf (1.65.1+dfsg-0ubuntu4) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libopenblas-base:armhf (0.2.20+ds-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libboost-program-options1.65-dev:armhf (1.65.1+dfsg-0ubuntu4) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libhts-dev:armhf (1.5-3) ... Setting up autoconf (2.69-11) ... Setting up libicu-dev (60.1-1ubuntu2) ... Setting up file (1:5.32-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-regex1.65-dev:armhf (1.65.1+dfsg-0ubuntu4) ... Setting up libboost-dev:armhf (1.65.1.0ubuntu1) ... Setting up libopenblas-dev:armhf (0.2.20+ds-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libboost-program-options-dev:armhf (1.65.1.0ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libboost-iostreams1.65-dev:armhf (1.65.1+dfsg-0ubuntu4) ... Setting up libboost-iostreams-dev:armhf (1.65.1.0ubuntu1) ... Setting up dh-autoreconf (14) ... Setting up debhelper (10.10.5ubuntu1) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up sbuild-build-depends-bio-eagle-dummy (0.invalid.0) ... (Reading database ... 28296 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-98-generic arm64 (armv7l) Toolchain package versions: binutils_2.29.1-7ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-13ubuntu1 gcc-7_7.2.0-13ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-13ubuntu1 libstdc++6_7.2.0-13ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha4 apt-transport-https_1.6~alpha4 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-7ubuntu1 binutils-arm-linux-gnueabihf_2.29.1-7ubuntu1 binutils-common_2.29.1-7ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu5 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 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openssl_1.0.2g-1ubuntu14 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-2ubuntu1 perl-base_5.26.1-2ubuntu1 perl-modules-5.26_5.26.1-2ubuntu1 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-bio-eagle-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_235-2ubuntu2 systemd-sysv_235-2ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tabix_1.5-3 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.1-0ubuntu5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Oct 26 19:02:04 2017 UTC gpgv: using RSA key gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bio-eagle_2.3.5-1build1.dsc dpkg-source: info: extracting bio-eagle in bio-eagle-2.3.5 dpkg-source: info: unpacking bio-eagle_2.3.5.orig.tar.gz dpkg-source: info: unpacking bio-eagle_2.3.5-1build1.debian.tar.xz dpkg-source: info: applying Makefile_config.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13625690 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13625690 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13625690 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bio-eagle dpkg-buildpackage: info: source version 2.3.5-1build1 dpkg-buildpackage: info: source distribution bionic dpkg-source --before-build bio-eagle-2.3.5 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j4 clean make[1]: Entering directory '/<>/src' rm -f *.o rm -f eagle make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules build-arch dh build-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src dh_auto_build -a -O--sourcedirectory=src cd src && make -j4 make[1]: Entering directory '/<>/src' g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o EagleMain.o -c EagleMain.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o DipTreePBWT.o -c DipTreePBWT.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o Eagle.o -c Eagle.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O2 -std=c++0x -fopenmp -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o EagleImpMiss.o -c EagleImpMiss.cpp In file included from EagleImpMiss.cpp:24:0: MemoryUtils.hpp:34:10: fatal error: xmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. Makefile:99: recipe for target 'EagleImpMiss.o' failed make[1]: *** [EagleImpMiss.o] Error 1 make[1]: *** Waiting for unfinished jobs.... In file included from Eagle.cpp:43:0: MemoryUtils.hpp:34:10: fatal error: xmmintrin.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. Makefile:99: recipe for target 'Eagle.o' failed make[1]: *** [Eagle.o] Error 1 EagleMain.cpp: In function ‘void phaseWithRef(EAGLE::EagleParams&, Timer&, double, int, char**)’: EagleMain.cpp:109:17: warning: unused variable ‘hapBitsTptr’ [-Wunused-variable] HapBitsT *hapBitsTptr = NULL; ^~~~~~~~~~~ EagleMain.cpp:110:17: warning: unused variable ‘hapHedgePtr’ [-Wunused-variable] HapHedge *hapHedgePtr = NULL; ^~~~~~~~~~~ EagleMain.cpp:104:25: warning: unused variable ‘timeImpMissing’ [-Wunused-variable] double timeMN2 = 0, timeImpMissing = 0; ^~~~~~~~~~~~~~ EagleMain.cpp: In function ‘int main(int, char**)’: EagleMain.cpp:445:61: warning: unused variable ‘timeImpMissing’ [-Wunused-variable] double t23 = timer.get_time(); timer.update_time(); double timeImpMissing = 0; ^~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:69:0, from DipTreePBWT.cpp:19: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const EAGLE::DipTreeNode&}; _Tp = EAGLE::DipTreeNode; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from DipTreePBWT.cpp:19: /usr/include/c++/7/bits/stl_vector.h: In constructor ‘EAGLE::DipTree::DipTree(const EAGLE::HapHedgeErr&, const std::vector&, const char*, const std::vector&, double, int, int, float, int)’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from DipTreePBWT.cpp:23: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1821:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/7/bits/stl_algo.h:61:0, from /usr/include/c++/7/algorithm:62, from DipTreePBWT.cpp:23: /usr/include/c++/7/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = EAGLE::DipTreeNode; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from DipTreePBWT.cpp:23: /usr/include/c++/7/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/7/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from DipTreePBWT.cpp:19: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void EAGLE::DipTree::advance()’: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/7/algorithm:62:0, from DipTreePBWT.cpp:23: /usr/include/c++/7/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from DipTreePBWT.cpp:19: /usr/include/c++/7/bits/stl_vector.h:948:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ make[1]: Leaving directory '/<>/src' dh_auto_build: cd src && make -j4 returned exit code 2 debian/rules:6: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 20171112-0300 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 3732 Build-Time: 18 Distribution: bionic-proposed Fail-Stage: build Host Architecture: armhf Install-Time: 57 Job: bio-eagle_2.3.5-1build1.dsc Machine Architecture: arm64 Package: bio-eagle Package-Time: 78 Source-Version: 2.3.5-1build1 Space: 3732 Status: attempted Version: 2.3.5-1build1 -------------------------------------------------------------------------------- Finished at 20171112-0300 Build needed 00:01:18, 3732k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13625690 Scanning for processes to kill in build PACKAGEBUILD-13625690 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13625690 Stopping target for build PACKAGEBUILD-13625690 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-13625690 Removing build PACKAGEBUILD-13625690