https://launchpad.net/ubuntu/+source/bio-rainbow/2.0.4+dfsg-2/+build/19868141 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-027 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 23 Aug 23:11:33 ntpdate[967093]: adjust time server 10.211.37.1 offset -0.000505 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19868141 --image-type chroot /home/buildd/filecache-default/a310bc38fff7ff850d9523076a2a133474f10c4a Creating target for build PACKAGEBUILD-19868141 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19868141 Starting target for build PACKAGEBUILD-19868141 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19868141 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19868141 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19868141 Updating target for build PACKAGEBUILD-19868141 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 Packages [889 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe riscv64 Packages [8247 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5264 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 Packages [30.3 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [26.0 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 Packages [289 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [213 kB] Fetched 16.0 MB in 29s (560 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: cpp-10 g++-10 gcc-10 libgcc-10-dev libstdc++-10-dev The following packages will be upgraded: apt base-files binutils binutils-common binutils-riscv64-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-9 debianutils dpkg dpkg-dev g++ g++-9 gcc gcc-10-base gcc-9 gcc-9-base libapt-pkg6.0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-9-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgmp10 libgomp1 libmount1 libmpc3 libpam-modules libpam-modules-bin libpam-runtime libpam0g libsmartcols1 libsqlite3-0 libstdc++-9-dev libstdc++6 libsystemd0 libudev1 libuuid1 libzstd1 linux-libc-dev mount sensible-utils util-linux 53 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 67.1 MB of archives. After this operation, 116 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main riscv64 base-files riscv64 11ubuntu12 [59.9 kB] Get:2 http://ftpmaster.internal/ubuntu groovy/main riscv64 bsdutils riscv64 1:2.36-2ubuntu1 [78.8 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main riscv64 coreutils riscv64 8.32-3ubuntu1 [1255 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main riscv64 debianutils riscv64 4.11.1 [84.4 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 dpkg riscv64 1.20.5ubuntu1 [1136 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 util-linux riscv64 2.36-2ubuntu1 [993 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgomp1 riscv64 10.2.0-5ubuntu2 [83.9 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-10-base riscv64 10.2.0-5ubuntu2 [19.7 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgcc-s1 riscv64 10.2.0-5ubuntu2 [40.4 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcc1-0 riscv64 10.2.0-5ubuntu2 [38.3 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 libatomic1 riscv64 10.2.0-5ubuntu2 [7480 B] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 libstdc++6 riscv64 10.2.0-5ubuntu2 [506 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libsystemd0 riscv64 246.2-1ubuntu1 [247 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libudev1 riscv64 246.2-1ubuntu1 [61.0 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main riscv64 libzstd1 riscv64 1.4.5+dfsg-4 [337 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main riscv64 libapt-pkg6.0 riscv64 2.1.10 [805 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main riscv64 apt riscv64 2.1.10 [1239 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main riscv64 libaudit-common all 1:2.8.5-3ubuntu1 [4076 B] Get:19 http://ftpmaster.internal/ubuntu groovy/main riscv64 libaudit1 riscv64 1:2.8.5-3ubuntu1 [37.6 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libpam0g riscv64 1.3.1-5ubuntu6 [51.4 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libpam-modules-bin riscv64 1.3.1-5ubuntu6 [34.7 kB] Get:22 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libpam-modules riscv64 1.3.1-5ubuntu6 [236 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main riscv64 mount riscv64 2.36-2ubuntu1 [112 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main riscv64 bsdextrautils riscv64 2.36-2ubuntu1 [70.2 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main riscv64 libblkid1 riscv64 2.36-2ubuntu1 [127 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmount1 riscv64 2.36-2ubuntu1 [134 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libpam-runtime all 1.3.1-5ubuntu6 [37.3 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsmartcols1 riscv64 2.36-2ubuntu1 [87.8 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main riscv64 libuuid1 riscv64 2.36-2ubuntu1 [23.8 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgmp10 riscv64 2:6.2.0+dfsg-6ubuntu1 [230 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 sensible-utils all 0.0.13 [15.1 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsqlite3-0 riscv64 3.33.0-1 [523 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgdbm6 riscv64 1.18.1-5.1 [24.2 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main riscv64 libctf0 riscv64 2.35-2ubuntu1 [40.5 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main riscv64 libctf-nobfd0 riscv64 2.35-2ubuntu1 [41.1 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils-riscv64-linux-gnu riscv64 2.35-2ubuntu1 [671 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main riscv64 libbinutils riscv64 2.35-2ubuntu1 [289 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils riscv64 2.35-2ubuntu1 [3292 B] Get:39 http://ftpmaster.internal/ubuntu groovy/main riscv64 binutils-common riscv64 2.35-2ubuntu1 [204 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmpc3 riscv64 1.2.0~rc1-1 [41.5 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main riscv64 cpp-10 riscv64 10.2.0-5ubuntu2 [6510 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgcc-10-dev riscv64 10.2.0-5ubuntu2 [473 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc-10 riscv64 10.2.0-5ubuntu2 [13.1 MB] Get:44 http://ftpmaster.internal/ubuntu groovy/main riscv64 g++ riscv64 4:10.1.0-1ubuntu1 [1592 B] Get:45 http://ftpmaster.internal/ubuntu groovy/main riscv64 gcc riscv64 4:10.1.0-1ubuntu1 [5220 B] Get:46 http://ftpmaster.internal/ubuntu groovy/main riscv64 libstdc++-10-dev riscv64 10.2.0-5ubuntu2 [3611 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main riscv64 g++-10 riscv64 10.2.0-5ubuntu2 [7477 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main riscv64 cpp riscv64 4:10.1.0-1ubuntu1 [27.7 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/universe riscv64 g++-9 riscv64 9.3.0-17ubuntu1 [6929 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/universe riscv64 gcc-9 riscv64 9.3.0-17ubuntu1 [6791 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libstdc++-9-dev riscv64 9.3.0-17ubuntu1 [3682 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libgcc-9-dev riscv64 9.3.0-17ubuntu1 [404 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/universe riscv64 cpp-9 riscv64 9.3.0-17ubuntu1 [6050 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/universe riscv64 gcc-9-base riscv64 9.3.0-17ubuntu1 [19.3 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main riscv64 dpkg-dev all 1.20.5ubuntu1 [758 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main riscv64 libdpkg-perl all 1.20.5ubuntu1 [231 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main riscv64 libgdbm-compat4 riscv64 1.18.1-5.1 [5600 B] Get:58 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 linux-libc-dev riscv64 5.8.0-16.17 [1081 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 67.1 MB in 12s (5646 kB/s) (Reading database ... 9854 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu12_riscv64.deb ... Unpacking base-files (11ubuntu12) over (11ubuntu9) ... Setting up base-files (11ubuntu12) ... Installing new version of config file /etc/update-motd.d/50-motd-news ... Removing obsolete conffile /etc/default/motd-news ... (Reading database ... 9853 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.36-2ubuntu1_riscv64.deb ... Unpacking bsdutils (1:2.36-2ubuntu1) over (1:2.35.2-9ubuntu1) ... Setting up bsdutils (1:2.36-2ubuntu1) ... (Reading database ... 9853 files and directories currently installed.) Preparing to unpack .../coreutils_8.32-3ubuntu1_riscv64.deb ... Unpacking coreutils (8.32-3ubuntu1) over (8.30-3ubuntu3) ... Setting up coreutils (8.32-3ubuntu1) ... (Reading database ... 9951 files and directories currently installed.) Preparing to unpack .../debianutils_4.11.1_riscv64.deb ... Unpacking debianutils (4.11.1) over (4.11) ... Setting up debianutils (4.11.1) ... 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Setting up gcc (4:10.1.0-1ubuntu1) ... Setting up g++-9 (9.3.0-17ubuntu1) ... Setting up g++ (4:10.1.0-1ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu10) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19868141 riscv64 groovy-proposed -c chroot:build-PACKAGEBUILD-19868141 --arch=riscv64 --dist=groovy-proposed --nolog bio-rainbow_2.0.4+dfsg-2.dsc Initiating build PACKAGEBUILD-19868141 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-027.buildd +==============================================================================+ | bio-rainbow 2.0.4+dfsg-2 (riscv64) Sun, 23 Aug 2020 23:15:59 +0000 | +==============================================================================+ Package: bio-rainbow Version: 2.0.4+dfsg-2 Source Version: 2.0.4+dfsg-2 Distribution: groovy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19868141/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/bio-rainbow-4BU7Pm/resolver-93lzG1' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bio-rainbow_2.0.4+dfsg-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/bio-rainbow-4BU7Pm/bio-rainbow-2.0.4+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bio-rainbow-4BU7Pm' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), help2man, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [375 B] Get:5 copy:/<>/apt_archive ./ Packages [460 B] Fetched 1792 B in 1s (2711 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-main-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 16.8 MB of archives. After this operation, 63.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [880 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main riscv64 libuchardet0 riscv64 0.0.7-1 [67.7 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main riscv64 groff-base riscv64 1.22.4-5 [815 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpipeline1 riscv64 1.5.3-1 [23.9 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 man-db riscv64 2.9.3-2 [1081 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmagic-mgc riscv64 1:5.38-5 [218 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmagic1 riscv64 1:5.38-5 [70.6 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 file riscv64 1:5.38-5 [22.5 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main riscv64 libelf1 riscv64 0.180-1 [42.1 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main riscv64 libglib2.0-0 riscv64 2.64.4-1 [1123 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 libicu67 riscv64 67.1-4 [8503 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxml2 riscv64 2.9.10+dfsg-5build1 [543 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsigsegv2 riscv64 2.12-2build1 [12.9 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main riscv64 automake all 1:1.16.2-3ubuntu2 [548 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtool all 2.4.6-14 [161 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:22 http://ftpmaster.internal/ubuntu groovy/main riscv64 libdebhelper-perl all 13.2ubuntu1 [64.2 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:25 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main riscv64 dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:27 http://ftpmaster.internal/ubuntu groovy/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main riscv64 po-debconf all 1.0.21 [233 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main riscv64 debhelper all 13.2ubuntu1 [878 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/universe riscv64 help2man riscv64 1.47.16 [173 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.8 MB in 3s (5989 kB/s) Selecting previously unselected package libuchardet0:riscv64. 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Processing triggers for libc-bin (2.31-0ubuntu10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-21-generic #25-Ubuntu SMP Tue Mar 31 01:57:06 UTC 2020 riscv64 (riscv64) Toolchain package versions: binutils_2.35-2ubuntu1 dpkg-dev_1.20.5ubuntu1 g++-10_10.2.0-5ubuntu2 g++-9_9.3.0-17ubuntu1 gcc-10_10.2.0-5ubuntu2 gcc-9_9.3.0-17ubuntu1 libc6-dev_2.31-0ubuntu10 libstdc++-10-dev_10.2.0-5ubuntu2 libstdc++-9-dev_9.3.0-17ubuntu1 libstdc++6_10.2.0-5ubuntu2 linux-libc-dev_5.8.0-16.17 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-3ubuntu2 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu12 base-passwd_3.5.47 bash_5.0-6ubuntu2 binutils_2.35-2ubuntu1 binutils-common_2.35-2ubuntu1 binutils-riscv64-linux-gnu_2.35-2ubuntu1 bsdextrautils_2.36-2ubuntu1 bsdutils_1:2.36-2ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-3ubuntu1 cpp_4:10.1.0-1ubuntu1 cpp-10_10.2.0-5ubuntu2 cpp-9_9.3.0-17ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2ubuntu1 debianutils_4.11.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3build1 dpkg_1.20.5ubuntu1 dpkg-dev_1.20.5ubuntu1 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 file_1:5.38-5 findutils_4.7.0-1ubuntu1 g++_4:10.1.0-1ubuntu1 g++-10_10.2.0-5ubuntu2 g++-9_9.3.0-17ubuntu1 gcc_4:10.1.0-1ubuntu1 gcc-10_10.2.0-5ubuntu2 gcc-10-base_10.2.0-5ubuntu2 gcc-8-base_8.4.0-4ubuntu1 gcc-9_9.3.0-17ubuntu1 gcc-9-base_9.3.0-17ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 help2man_1.47.16 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-5ubuntu2 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu1 libaudit1_1:2.8.5-3ubuntu1 libbinutils_2.35-2ubuntu1 libblkid1_2.36-2ubuntu1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.31-0ubuntu10 libc-dev-bin_2.31-0ubuntu10 libc6_2.31-0ubuntu10 libc6-dev_2.31-0ubuntu10 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-5ubuntu2 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1ubuntu1 libcrypt1_1:4.4.16-1ubuntu1 libctf-nobfd0_2.35-2ubuntu1 libctf0_2.35-2ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.252ubuntu1 libdebhelper-perl_13.2ubuntu1 libdpkg-perl_1.20.5ubuntu1 libelf1_0.180-1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-5ubuntu2 libgcc-9-dev_9.3.0-17ubuntu1 libgcc-s1_10.2.0-5ubuntu2 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.13-4ubuntu4 libgomp1_10.2.0-5ubuntu2 libgpg-error0_1.38-2 libgpm2_1.20.7-6 libhogweed5_3.5.1+really3.5.1-2 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libisl22_0.22.1-1 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-2ubuntu1 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnettle8_3.6-2 libnpth0_1.6-2 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-2 libreadline8_8.0-4 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-2ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu3 libstdc++-10-dev_10.2.0-5ubuntu2 libstdc++-9-dev_9.3.0-17ubuntu1 libstdc++6_10.2.0-5ubuntu2 libsub-override-perl_0.09-2 libsystemd0_246.2-1ubuntu1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-1 libtool_2.4.6-14 libuchardet0_0.0.7-1 libudev1_246.2-1ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-2ubuntu1 libxml2_2.9.10+dfsg-5build1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-16.17 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-2ubuntu1 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1build1 sensible-utils_0.0.13 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 ubuntu-keyring_2020.06.17.1 util-linux_2.36-2ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bio-rainbow Binary: bio-rainbow Architecture: any Version: 2.0.4+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Pranav Ballaney Homepage: http://sourceforge.net/projects/bio-rainbow/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/bio-rainbow Vcs-Git: https://salsa.debian.org/med-team/bio-rainbow.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: bio-rainbow deb science optional arch=any Checksums-Sha1: 69aa7e1ad4254ee1f2aa3f4d62bb49be724654aa 58808 bio-rainbow_2.0.4+dfsg.orig.tar.xz 0167f4b007285a9c2f54f313a7a1c475aaebc0d5 14012 bio-rainbow_2.0.4+dfsg-2.debian.tar.xz Checksums-Sha256: a4e77785f8b5419d8d40aaa0b3b3fe48d3892793dec60049ca5074e43fe46b5e 58808 bio-rainbow_2.0.4+dfsg.orig.tar.xz 2ff6db13165339d6b52e13eea6ab32700a48c662d9409062a18cebe156836a36 14012 bio-rainbow_2.0.4+dfsg-2.debian.tar.xz Files: 9dcb2fb4e52a73ffe32c61f97921c8e0 58808 bio-rainbow_2.0.4+dfsg.orig.tar.xz cb7bb50a5910620b126226506cc13922 14012 bio-rainbow_2.0.4+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9CvWsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG0WRAAjkL/JGdzH8Lv124xrTFM+K7v1nXRx+4S kjbW3pVRURp6XgXFRiJ47x1nknjpS6h7AO2MLQ1zLJ27CyIFdRsZSliH8T3afxIE wn17QfCIwmbYP8S/LMo0viD5xuB5C2LVj9Zncn1M05qacdecUgayX62YVOavQcyz V7CYc5ohABV7Fdq+0GKttEIOy/WSstj3vquHogjA7x0CI+THxPcpUhkmndx7aMFV gEJUm981/Y92LUkqGNHGZp9NGyq9EVHuOQYVZ/1pQI5R5iLJvBXDOYugM0NTRW+d asxNiLY3W0kpYQTkLcrk1kjJFA4EjUzT1Wq1ZZvXso+agEh8V+32ZuJmAIA6D163 YCYpwlk8/dpoOlnWqBv8tue9nm431troD1rHjyVg/1QdlQjvmmrpNPd8NdH7aFw8 X7P4ShZwU0EhAW0ysJi96R49ZpN6AnLNgP4O99EYj2eDe7im9OyOaF/EwXAWCwOf CO9g4d8Cms3WsCmSQySavDjqjgPBF/9yFwuya4PBmbjtOac5p/6wpHMlVUO2c/Uc RpRGvm8awZu7S0d4izN9ouHSOLdfekKZjxscHrLFNCgWK0EdnRuyPJGiCcDtFkgM ZadBsADFHUyO9+AzhE49D5Z3sDU3/nn+m3JEcwE38oLDHUQglaPsZtJybg38hHYz eyvo4OggmpE= =e4K2 -----END PGP SIGNATURE----- gpgv: Signature made Sun Aug 23 19:03:07 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bio-rainbow_2.0.4+dfsg-2.dsc dpkg-source: info: extracting bio-rainbow in /<> dpkg-source: info: unpacking bio-rainbow_2.0.4+dfsg.orig.tar.xz tar: Ignoring unknown extended header keyword 'LIBARCHIVE.creationtime' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' tar: Ignoring unknown extended header keyword 'SCHILY.dev' tar: Ignoring unknown extended header keyword 'SCHILY.ino' tar: Ignoring unknown extended header keyword 'SCHILY.nlink' dpkg-source: info: unpacking bio-rainbow_2.0.4+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_hardening.patch dpkg-source: info: applying rename_binary.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19868141 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19868141 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19868141 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package bio-rainbow dpkg-buildpackage: info: source version 2.0.4+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_auto_clean make -j8 clean make[1]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out bio-rainbow rbasm ezmsim rbmergetag *.exe make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j8 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 main.c -o main.o gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 divide.c -o divide.o gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 file_reader.c -o file_reader.o gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 asm_R2.c -o asm_R2.o gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 mergectg.c -o mergectg.o gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 cluster.c -o cluster.o gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 ezmsim.c -o ezmsim.o gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -D_FILE_OFFSET_BITS=64 rbasm_main.c -o rbasm_main.o ezmsim.c: In function ‘LR_main’: ezmsim.c:440:19: warning: this statement may fall through [-Wimplicit-fallthrough=] 440 | case 'z': cut = strdup(optarg); | ^~~~~~~~~~~~~~ ezmsim.c:441:3: note: here 441 | case 'p': pos = atoi(optarg); | ^~~~ ezmsim.c: In function ‘EF_main’: ezmsim.c:707:19: warning: this statement may fall through [-Wimplicit-fallthrough=] 707 | case 'z': cut = strdup(optarg); | ^~~~~~~~~~~~~~ ezmsim.c:708:3: note: here 708 | case 'p': pos = atoi(optarg); | ^~~~ ezmsim.c: At top level: cc1: note: unrecognized command-line option ‘-Wno-self-assign’ may have been intended to silence earlier diagnostics gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -o ezmsim ezmsim.o -lm gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -o rbasm asm_R2.o rbasm_main.o file_reader.o -lm gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -W -O2 -Wall -Wno-self-assign -Wno-unused-function -o bio-rainbow main.o divide.o file_reader.o asm_R2.o mergectg.o cluster.o -lm make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>' # dh_installman is messing up .sh extension as language extension dh_install debian/mans/*.1 usr/share/man/man1 make[1]: Leaving directory '/<>' dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing bio-rainbow-dbgsym (in debian/.debhelper/bio-rainbow/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing bio-rainbow (in debian/bio-rainbow); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/bio-rainbow/dbgsym-root/DEBIAN/control, package bio-rainbow-dbgsym, directory debian/.debhelper/bio-rainbow/dbgsym-root dpkg-deb: building package 'bio-rainbow-dbgsym' in 'debian/.debhelper/scratch-space/build-bio-rainbow/bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.deb'. Renaming bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.deb to bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.ddeb pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bio-rainbow/DEBIAN/control, package bio-rainbow, directory debian/bio-rainbow pkgstripfiles: Running PNG optimization (using 8 cpus) for package bio-rainbow ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bio-rainbow' in '../bio-rainbow_2.0.4+dfsg-2_riscv64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../bio-rainbow_2.0.4+dfsg-2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-08-23T23:20:25Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bio-rainbow_2.0.4+dfsg-2_riscv64.changes: ----------------------------------------- Format: 1.8 Date: Sun, 23 Aug 2020 05:32:47 +0530 Source: bio-rainbow Binary: bio-rainbow Architecture: riscv64 Version: 2.0.4+dfsg-2 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Pranav Ballaney Description: bio-rainbow - clustering and assembling short reads for bioinformatics Changes: bio-rainbow (2.0.4+dfsg-2) unstable; urgency=medium . [ Steffen Möller ] * Updated bio.tools ref * Added ref to conda . [ Pranav Ballaney ] * Install data for autopkgtests * Add autopkgtests * Install docs * Add Pranav Ballaney to Uploaders * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: cfa863ea8812f3fd39b5d3e01e91ba28d9b23225 168340 bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.ddeb 67fe95881de23f8fea74ad61d5be8a25b5cca8de 5079 bio-rainbow_2.0.4+dfsg-2_riscv64.buildinfo a1c009fc01c87776faf9ec454aa49bb7013760d4 60148 bio-rainbow_2.0.4+dfsg-2_riscv64.deb Checksums-Sha256: f6ecb01a67b5f3f2a23137ce1a079e0b47d815bdf1b6ea287217fe291c7c94d3 168340 bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.ddeb f638294f54197640b1e682a2a4ea21a536ac9a1c36118e2f3e5e424269bb2d8e 5079 bio-rainbow_2.0.4+dfsg-2_riscv64.buildinfo 8b2a9054569d576f43d57e54cb049b0818f2c61dfd5fb66c1c3a4178a2472109 60148 bio-rainbow_2.0.4+dfsg-2_riscv64.deb Files: 8a618ef34dc111acb4ae58fa8ca526e1 168340 debug optional bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.ddeb 84a74282099138e1749d0f9ba49c79a6 5079 science optional bio-rainbow_2.0.4+dfsg-2_riscv64.buildinfo 02717b04664607ac0c26527b570f0135 60148 science optional bio-rainbow_2.0.4+dfsg-2_riscv64.deb /<>/bio-rainbow_2.0.4+dfsg-2_riscv64.changes.new could not be renamed to /<>/bio-rainbow_2.0.4+dfsg-2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: bio-rainbow Binary: bio-rainbow bio-rainbow-dbgsym Architecture: riscv64 Version: 2.0.4+dfsg-2 Checksums-Md5: 8a618ef34dc111acb4ae58fa8ca526e1 168340 bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.ddeb 02717b04664607ac0c26527b570f0135 60148 bio-rainbow_2.0.4+dfsg-2_riscv64.deb Checksums-Sha1: cfa863ea8812f3fd39b5d3e01e91ba28d9b23225 168340 bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.ddeb a1c009fc01c87776faf9ec454aa49bb7013760d4 60148 bio-rainbow_2.0.4+dfsg-2_riscv64.deb Checksums-Sha256: f6ecb01a67b5f3f2a23137ce1a079e0b47d815bdf1b6ea287217fe291c7c94d3 168340 bio-rainbow-dbgsym_2.0.4+dfsg-2_riscv64.ddeb 8b2a9054569d576f43d57e54cb049b0818f2c61dfd5fb66c1c3a4178a2472109 60148 bio-rainbow_2.0.4+dfsg-2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sun, 23 Aug 2020 23:20:20 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-3ubuntu2), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu12), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu2), binutils (= 2.35-2ubuntu1), binutils-common (= 2.35-2ubuntu1), binutils-riscv64-linux-gnu (= 2.35-2ubuntu1), bsdextrautils (= 2.36-2ubuntu1), bsdutils (= 1:2.36-2ubuntu1), build-essential (= 12.8ubuntu3), bzip2 (= 1.0.8-4ubuntu2), coreutils (= 8.32-3ubuntu1), cpp (= 4:10.1.0-1ubuntu1), cpp-10 (= 10.2.0-5ubuntu2), cpp-9 (= 9.3.0-17ubuntu1), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2ubuntu1), debianutils (= 4.11.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3build1), dpkg (= 1.20.5ubuntu1), dpkg-dev (= 1.20.5ubuntu1), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu1), g++ (= 4:10.1.0-1ubuntu1), g++-10 (= 10.2.0-5ubuntu2), gcc (= 4:10.1.0-1ubuntu1), gcc-10 (= 10.2.0-5ubuntu2), gcc-10-base (= 10.2.0-5ubuntu2), gcc-9 (= 9.3.0-17ubuntu1), gcc-9-base (= 9.3.0-17ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), help2man (= 1.47.16), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libatomic1 (= 10.2.0-5ubuntu2), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu1), libaudit1 (= 1:2.8.5-3ubuntu1), libbinutils (= 2.35-2ubuntu1), libblkid1 (= 2.36-2ubuntu1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.31-0ubuntu10), libc-dev-bin (= 2.31-0ubuntu10), libc6 (= 2.31-0ubuntu10), libc6-dev (= 2.31-0ubuntu10), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-5ubuntu2), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1ubuntu1), libcrypt1 (= 1:4.4.16-1ubuntu1), libctf-nobfd0 (= 2.35-2ubuntu1), libctf0 (= 2.35-2ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.252ubuntu1), libdebhelper-perl (= 13.2ubuntu1), libdpkg-perl (= 1.20.5ubuntu1), libelf1 (= 0.180-1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-5ubuntu2), libgcc-9-dev (= 9.3.0-17ubuntu1), libgcc-s1 (= 10.2.0-5ubuntu2), libgcrypt20 (= 1.8.5-5ubuntu2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.64.4-1), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 10.2.0-5ubuntu2), libgpg-error0 (= 1.38-2), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), liblocale-gettext-perl (= 1.07-4), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-2ubuntu1), libmpc3 (= 1.2.0~rc1-1), libmpfr6 (= 4.1.0-3), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-2ubuntu1), libstdc++-10-dev (= 10.2.0-5ubuntu2), libstdc++6 (= 10.2.0-5ubuntu2), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.2-1ubuntu1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libuchardet0 (= 0.0.7-1), libudev1 (= 246.2-1ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-2ubuntu1), libxml2 (= 2.9.10+dfsg-5build1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-16.17), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1build1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-3ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-2ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1598140967" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bio-rainbow_2.0.4+dfsg-2_riscv64.deb ------------------------------------ new Debian package, version 2.0. size 60148 bytes: control archive=1748 bytes. 1442 bytes, 27 lines control 1642 bytes, 23 lines md5sums Package: bio-rainbow Version: 2.0.4+dfsg-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 150 Depends: libc6 (>= 2.27), perl:any Section: science Priority: optional Homepage: http://sourceforge.net/projects/bio-rainbow/ Description: clustering and assembling short reads for bioinformatics Efficient tool for clustering and assembling short reads, especially for RAD. . Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data. drwxr-xr-x root/root 0 2020-08-23 00:02 ./ drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/ drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/bin/ -rwxr-xr-x root/root 63912 2020-08-23 00:02 ./usr/bin/bio-rainbow -rwxr-xr-x root/root 19136 2020-08-23 00:02 ./usr/bin/ezmsim -rwxr-xr-x root/root 27000 2020-08-23 00:02 ./usr/bin/rbasm -rwxr-xr-x root/root 427 2015-07-27 18:28 ./usr/bin/select_all_rbcontig.pl -rwxr-xr-x root/root 535 2015-07-27 18:28 ./usr/bin/select_best_rbcontig.pl -rwxr-xr-x root/root 1597 2015-07-27 18:28 ./usr/bin/select_best_rbcontig_plus_read1.pl -rwxr-xr-x root/root 872 2015-07-27 18:28 ./usr/bin/select_sec_rbcontig.pl drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/share/ drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/ -rw-r--r-- root/root 86 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/README.Debian -rw-r--r-- root/root 731 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/README.test -rw-r--r-- root/root 1932 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/README.txt.gz -rw-r--r-- root/root 717 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/changelog.Debian.gz -rw-r--r-- root/root 1869 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/copyright drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/examples/ -rw-r--r-- root/root 3321 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/examples/R.1.fastq.gz -rw-r--r-- root/root 3568 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/examples/R.2.fastq.gz -rw-r--r-- root/root 842 2020-08-23 00:02 ./usr/share/doc/bio-rainbow/run-unit-test drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/share/lintian/ drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 121 2020-08-23 00:02 ./usr/share/lintian/overrides/bio-rainbow drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/share/man/ drwxr-xr-x root/root 0 2020-08-23 00:02 ./usr/share/man/man1/ -rw-r--r-- root/root 928 2020-08-23 00:02 ./usr/share/man/man1/bio-rainbow.1.gz -rw-r--r-- root/root 405 2020-08-23 00:02 ./usr/share/man/man1/ezmsim.1.gz -rw-r--r-- root/root 439 2020-08-23 00:02 ./usr/share/man/man1/rbasm.1.gz -rw-r--r-- root/root 315 2020-08-23 00:02 ./usr/share/man/man1/select_all_rbcontig.pl.1.gz -rw-r--r-- root/root 316 2020-08-23 00:02 ./usr/share/man/man1/select_best_rbcontig.pl.1.gz -rw-r--r-- root/root 348 2020-08-23 00:02 ./usr/share/man/man1/select_best_rbcontig_plus_read1.pl.1.gz -rw-r--r-- root/root 317 2020-08-23 00:02 ./usr/share/man/man1/select_sec_rbcontig.pl.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 5248 Build-Time: 157 Distribution: groovy-proposed Host Architecture: riscv64 Install-Time: 84 Job: bio-rainbow_2.0.4+dfsg-2.dsc Machine Architecture: riscv64 Package: bio-rainbow Package-Time: 266 Source-Version: 2.0.4+dfsg-2 Space: 5248 Status: successful Version: 2.0.4+dfsg-2 -------------------------------------------------------------------------------- Finished at 2020-08-23T23:20:25Z Build needed 00:04:26, 5248k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19868141 Scanning for processes to kill in build PACKAGEBUILD-19868141 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19868141 Stopping target for build PACKAGEBUILD-19868141 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19868141 Removing build PACKAGEBUILD-19868141