biobambam2 2.0.164+ds-1 source package in Ubuntu


biobambam2 (2.0.164+ds-1) unstable; urgency=medium

  * Team upload.

  [ Pranav Ballaney ]
  * Add autopkgtest data
  * Add autopkgtests
  * Install manpages and docs

  [ Andreas Tille ]
  * New upstream version
  * debhelper-compat 13 (routine-update)
  * Bump versioned Build-Depends: libmaus2-dev (>= 2.0.719)

 -- Pranav Ballaney <email address hidden>  Thu, 28 May 2020 08:15:02 +0200

Upload details

Uploaded by:
Debian Med on 2020-05-28
Uploaded to:
Original maintainer:
Debian Med
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Groovy release on 2020-06-18 universe misc


File Size SHA-256 Checksum
biobambam2_2.0.164+ds-1.dsc 2.0 KiB e506b5f53c473780b8191f085c11e3804f040c29a10b0248dcf5ac919828d318
biobambam2_2.0.164+ds.orig.tar.xz 238.0 KiB fb76551be85abee9e676d7f77cbc904331c74c58e905712a91fb95b05b7f00bf
biobambam2_2.0.164+ds-1.debian.tar.xz 1007.5 KiB efaa9eb4e9be4ae6064b72b7a636676ccc9efe5b2a4de9340a0ab41f7700438c

No changes file available.

Binary packages built by this source

biobambam2: tools for early stage alignment file processing

 This package contains some tools for processing BAM files, including
   bamsormadup: parallel sorting and duplicate marking
   bamcollate2: reads BAM and writes BAM reordered such that alignment
                 or collated by query name
   bammarkduplicates: reads BAM and writes BAM with duplicate alignments
                 marked using the BAM flags field
   bammaskflags: reads BAM and writes BAM while masking (removing) bits
                 from the flags column
   bamrecompress: reads BAM and writes BAM with a defined compression
                  setting. This tool is capable of multi-threading.
   bamsort: reads BAM and writes BAM resorted by coordinates or
                  query name
   bamtofastq: reads BAM and writes FastQ; output can be collated
                  or uncollated by query name

biobambam2-dbgsym: debug symbols for biobambam2