biojava-live 1:1.7.1-1 source package in Ubuntu


biojava-live (1:1.7.1-1) unstable; urgency=low

  * New upstream version.
  * New epoch
     - because of an unfortunate versioning of previous upload
     - to indicate the now happening BioJava Hackathon in Cambridge, UK
 -- Bhavani Shankar <email address hidden>   Tue,  02 Feb 2010 21:17:49 +0000

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Uploaded by:
Bhavani Shankar on 2010-02-02
Uploaded to:
Original maintainer:
Debian Med
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Precise release on 2011-10-13 universe science
Lucid release on 2010-02-02 universe science


Lucid: [FULLYBUILT] i386


File Size MD5 Checksum
biojava-live_1.7.1.orig.tar.gz 10.5 MiB ed69ed2aba1f1327c5c8386bf16c872c
biojava-live_1.7.1-1.diff.gz 7.6 KiB 9fc13b7db4224032d3aebd7b849c6fd7
biojava-live_1.7.1-1.dsc 1.7 KiB 0452d8b0741793bdc1446b84429c849f

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Binary packages built by this source

libbiojava-java: Java API to biological data and applications

 BioJava is an open-source project dedicated to providing a Java framework
 for processing biological data. It includes objects for manipulating
 sequences, file parsers, DAS client and server support, access to BioSQL
 and Ensembl databases, and powerful analysis and statistical routines
 including a dynamic programming toolkit.
 BioJava is provided by a vibrant community which meets annually at
 the Bioinformatics Open Source Conference (BOSC) that traditionally
 accompanies the Intelligent Systems in Molecular Biology (ISMB)
 meeting. Much like BioPerl, the employment of this library is valuable
 for everybody active in the field because of the many tricks of the
 trade one learns just by communicating on the mailing list.
 If using BioJava, please cite: R.C.G. Holland, T. Down, M. Pocock,
 A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates,
 M. Heuer; M.J. Schreiber (2008) "BioJava: an Open-Source Framework
 for Bioinformatics" Bioinformatics 24(18):2096-2097.
 This is a wrapper package which should enable smooth upgrades to new

libbiojava-java-demos: Example programs for BioJava

 The package comes with a wealth of use cases for BioJava. It is generated
 together with the API documentation but because of its size of ~3.7MB it
 was decided to distribute it separately.

libbiojava-java-doc: [Biology] Documentation for BioJava

 This package contains the HTML documentation describing the API of BioJava
 which was generated automatically by JavaDoc.

libbiojava1.7-java: Java API to biological data and applications

 This package presents the Open Source Java API to biological databases
 and a series of mostly sequence-based algorithms. The APIs are not
 compatible between versions. In analogy to the dealing with shared
 libraries of the C language, the jar file of this package has the
 API version in its name. It is symbolically linked to the expected
 biojava.jar filename in the package libbiojava-java. This will help
 keeping multiple versions of the biojava API in parallel.