biojava-live 1:1.7.1-1 source package in Ubuntu


biojava-live (1:1.7.1-1) unstable; urgency=low

  * New upstream version.
  * New epoch
     - because of an unfortunate versioning of previous upload
     - to indicate the now happening BioJava Hackathon in Cambridge, UK
 -- Bhavani Shankar <email address hidden>   Tue,  02 Feb 2010 21:17:49 +0000

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Uploaded by:
Bhavani Shankar on 2010-02-02
Uploaded to:
Original maintainer:
Debian Med
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Precise release on 2011-10-13 universe science
Lucid release on 2010-02-02 universe science


Lucid: [FULLYBUILT] i386


File Size SHA-256 Checksum
biojava-live_1.7.1.orig.tar.gz 10.5 MiB 60211e48176ffb4371465e3118f7ca8f5837175f3798fd843d56c449e17ba57b
biojava-live_1.7.1-1.diff.gz 7.6 KiB 020ab77286715392ba4ed67956c3ec04062ae3c094b6167978840ff78505e378
biojava-live_1.7.1-1.dsc 1.7 KiB fb4e979e420bf7711db6d60806d639e71fbafd3523375d913b96e01954d70ec3

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Binary packages built by this source

libbiojava-java: Java API to biological data and applications

 BioJava is an open-source project dedicated to providing a Java framework
 for processing biological data. It includes objects for manipulating
 sequences, file parsers, DAS client and server support, access to BioSQL
 and Ensembl databases, and powerful analysis and statistical routines
 including a dynamic programming toolkit.
 BioJava is provided by a vibrant community which meets annually at
 the Bioinformatics Open Source Conference (BOSC) that traditionally
 accompanies the Intelligent Systems in Molecular Biology (ISMB)
 meeting. Much like BioPerl, the employment of this library is valuable
 for everybody active in the field because of the many tricks of the
 trade one learns just by communicating on the mailing list.
 If using BioJava, please cite: R.C.G. Holland, T. Down, M. Pocock,
 A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates,
 M. Heuer; M.J. Schreiber (2008) "BioJava: an Open-Source Framework
 for Bioinformatics" Bioinformatics 24(18):2096-2097.
 This is a wrapper package which should enable smooth upgrades to new

libbiojava-java-demos: Example programs for BioJava

 The package comes with a wealth of use cases for BioJava. It is generated
 together with the API documentation but because of its size of ~3.7MB it
 was decided to distribute it separately.

libbiojava-java-doc: [Biology] Documentation for BioJava

 This package contains the HTML documentation describing the API of BioJava
 which was generated automatically by JavaDoc.

libbiojava1.7-java: Java API to biological data and applications

 This package presents the Open Source Java API to biological databases
 and a series of mostly sequence-based algorithms. The APIs are not
 compatible between versions. In analogy to the dealing with shared
 libraries of the C language, the jar file of this package has the
 API version in its name. It is symbolically linked to the expected
 biojava.jar filename in the package libbiojava-java. This will help
 keeping multiple versions of the biojava API in parallel.