RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux tipua 3.2.0-54-generic #82-Ubuntu SMP Tue Sep 10 20:08:42 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_122~0.IS.8.04 python-lpbuildd_122~0.IS.8.04 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.4. Syncing the system clock with the buildd NTP service... 20 May 23:09:00 ntpdate[6833]: adjust time server 10.211.37.1 offset -0.000093 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6027400', '/home/buildd/filecache-default/81bbcf17ca8f36afec952017e645dd26ea5ef772'] Unpacking chroot for build PACKAGEBUILD-6027400 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6027400'] Mounting chroot for build PACKAGEBUILD-6027400 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6027400', 'deb http://ftpmaster.internal/ubuntu utopic main universe', 'deb http://ftpmaster.internal/ubuntu utopic-security main universe', 'deb http://ftpmaster.internal/ubuntu utopic-updates main universe', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6027400 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6027400', 'i386'] Updating debian chroot for build PACKAGEBUILD-6027400 Ign http://ftpmaster.internal utopic InRelease Ign http://archive-team.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://archive-team.internal utopic Release.gpg Ign http://ftpmaster.internal utopic-updates InRelease Get:1 http://archive-team.internal utopic Release [723 B] Ign http://ftpmaster.internal utopic-proposed InRelease Get:2 http://ftpmaster.internal utopic Release.gpg [933 B] Get:3 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:4 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal utopic Release [58.5 kB] Get:7 http://ftpmaster.internal utopic-security Release [58.5 kB] Get:8 http://archive-team.internal utopic/main i386 Packages Get:9 http://ftpmaster.internal utopic-updates Release [58.5 kB] Get:10 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Ign http://archive-team.internal utopic/main Translation-en Get:11 http://ftpmaster.internal utopic/main i386 Packages [1335 kB] Get:12 http://ftpmaster.internal utopic/universe i386 Packages [6002 kB] Get:13 http://ftpmaster.internal utopic/main Translation-en [762 kB] Get:14 http://ftpmaster.internal utopic/universe Translation-en [4187 kB] Get:15 http://ftpmaster.internal utopic-security/main i386 Packages [14 B] Get:16 http://ftpmaster.internal utopic-security/universe i386 Packages [14 B] Get:17 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal utopic-updates/main i386 Packages [14 B] Get:20 http://ftpmaster.internal utopic-updates/universe i386 Packages [14 B] Get:21 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal utopic-proposed/main i386 Packages [35.7 kB] Get:24 http://ftpmaster.internal utopic-proposed/universe i386 Packages [89.2 kB] Get:25 http://ftpmaster.internal utopic-proposed/main Translation-en [14.2 kB] Get:26 http://ftpmaster.internal utopic-proposed/universe Translation-en [63.6 kB] Fetched 12.7 MB in 6s (1869 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: init-system-helpers The following packages will be upgraded: bash busybox-initramfs ca-certificates cpp cpp-4.8 fakeroot g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gcc-4.9-base ifupdown initramfs-tools initramfs-tools-bin initscripts kmod libasan0 libatomic1 libcgmanager0 libdbus-1-3 libdrm2 libfakeroot libgcc-4.8-dev libgcc1 libgmp10 libgnutls26 libgnutls28 libgomp1 libitm1 libkmod2 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth2 libquadmath0 libsemanage-common libsemanage1 libsepol1 libssl1.0.0 libstdc++-4.8-dev libstdc++6 libtasn1-6 libudev1 linux-libc-dev login make module-init-tools mountall openssl passwd plymouth sysv-rc sysvinit-utils tzdata udev upstart 60 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 27.9 MB of archives. After this operation, 2725 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main bash i386 4.3-7ubuntu3 [549 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main login i386 1:4.1.5.1-1.1ubuntu1 [300 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libitm1 i386 4.9.0-4ubuntu4 [32.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgomp1 i386 4.9.0-4ubuntu4 [39.7 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic-proposed/main gcc-4.9-base i386 4.9.0-4ubuntu4 [16.0 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libstdc++6 i386 4.9.0-4ubuntu4 [292 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libquadmath0 i386 4.9.0-4ubuntu4 [195 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libatomic1 i386 4.9.0-4ubuntu4 [10.3 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgcc1 i386 1:4.9.0-4ubuntu4 [48.3 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libpam0g i386 1.1.8-3ubuntu1 [57.5 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules-bin i386 1.1.8-3ubuntu1 [30.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules i386 1.1.8-3ubuntu1 [233 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage-common all 2.2-2 [6416 B] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage1 i386 2.2-2 [69.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libsepol1 i386 2.3-1 [100 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main libgmp10 i386 2:6.0.0+dfsg-4 [234 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main libtasn1-6 i386 3.5-2 [42.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls28 i386 3.2.14-1 [453 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main libssl1.0.0 i386 1.0.1f-1ubuntu3 [783 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libdbus-1-3 i386 1.6.18-0ubuntu5 [131 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libdrm2 i386 2.4.54-1 [23.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 i386 16-2ubuntu4 [40.2 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libnih-dbus1 i386 1.0.3-4ubuntu26 [13.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libnih1 i386 1.0.3-4ubuntu26 [46.8 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main plymouth i386 0.8.8-0ubuntu18 [101 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libplymouth2 i386 0.8.8-0ubuntu18 [77.1 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools all 0.103ubuntu6 [44.5 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main mountall i386 2.54 [54.4 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main sysvinit-utils i386 2.88dsf-41ubuntu12 [49.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main sysv-rc all 2.88dsf-41ubuntu12 [37.8 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main passwd i386 1:4.1.5.1-1.1ubuntu1 [745 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main initscripts i386 2.88dsf-41ubuntu12 [29.0 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/main ifupdown i386 0.7.48.1ubuntu3 [49.9 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main upstart i386 1.12.1-0ubuntu7 [367 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main libcgmanager0 i386 0.26-0ubuntu2 [25.1 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main udev i386 204-10ubuntu3 [737 kB] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main libudev1 i386 204-10ubuntu3 [39.1 kB] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools-bin i386 0.103ubuntu6 [8928 B] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main busybox-initramfs i386 1:1.22.0-6ubuntu1 [161 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main kmod i386 16-2ubuntu4 [86.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 16-2ubuntu4 [2084 B] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main init-system-helpers all 1.18 [12.6 kB] Get:43 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls26 i386 2.12.23-15ubuntu1 [374 kB] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 i386 4.8.2-23ubuntu1 [7023 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 i386 4.8.2-23ubuntu1 [4892 kB] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 i386 4.8.2-23ubuntu1 [4445 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev i386 4.8.2-23ubuntu1 [1060 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev i386 4.8.2-23ubuntu1 [1736 kB] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main libasan0 i386 4.8.2-23ubuntu1 [64.3 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base i386 4.8.2-23ubuntu1 [15.9 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main libpam-runtime all 1.1.8-3ubuntu1 [39.7 kB] Get:52 http://ftpmaster.internal/ubuntu/ utopic/main tzdata all 2014c-1 [190 kB] Get:53 http://ftpmaster.internal/ubuntu/ utopic/main openssl i386 1.0.1f-1ubuntu3 [479 kB] Get:54 http://ftpmaster.internal/ubuntu/ utopic/main ca-certificates all 20140325 [184 kB] Get:55 http://ftpmaster.internal/ubuntu/ utopic/main cpp i386 4:4.8.2-4ubuntu1 [27.6 kB] Get:56 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libfakeroot i386 1.20-3ubuntu3 [25.5 kB] Get:57 http://ftpmaster.internal/ubuntu/ utopic-proposed/main fakeroot i386 1.20-3ubuntu3 [55.6 kB] Get:58 http://ftpmaster.internal/ubuntu/ utopic/main gcc i386 4:4.8.2-4ubuntu1 [5228 B] Get:59 http://ftpmaster.internal/ubuntu/ utopic/main g++ i386 4:4.8.2-4ubuntu1 [1596 B] Get:60 http://ftpmaster.internal/ubuntu/ utopic/main linux-libc-dev i386 3.15.0-1.5 [758 kB] Get:61 http://ftpmaster.internal/ubuntu/ utopic/main make i386 4.0-7 [144 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.9 MB in 2s (11.3 MB/s) (Reading database ... 11810 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu3_i386.deb ... Unpacking bash (4.3-7ubuntu3) over (4.3-7ubuntu1) ... Setting up bash (4.3-7ubuntu3) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11810 files and directories currently installed.) Preparing to unpack .../login_1%3a4.1.5.1-1.1ubuntu1_i386.deb ... Unpacking login (1:4.1.5.1-1.1ubuntu1) over (1:4.1.5.1-1ubuntu9) ... Setting up login (1:4.1.5.1-1.1ubuntu1) ... (Reading database ... 11810 files and directories currently installed.) Preparing to unpack .../libitm1_4.9.0-4ubuntu4_i386.deb ... Unpacking libitm1:i386 (4.9.0-4ubuntu4) over (4.9.0-1ubuntu3) ... Preparing to unpack .../libgomp1_4.9.0-4ubuntu4_i386.deb ... Unpacking libgomp1:i386 (4.9.0-4ubuntu4) over (4.9.0-1ubuntu3) ... Preparing to unpack .../gcc-4.9-base_4.9.0-4ubuntu4_i386.deb ... Unpacking gcc-4.9-base:i386 (4.9.0-4ubuntu4) over (4.9.0-1ubuntu3) ... 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Universal Time is now: Tue May 20 23:09:22 UTC 2014. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11859 files and directories currently installed.) Preparing to unpack .../openssl_1.0.1f-1ubuntu3_i386.deb ... Unpacking openssl (1.0.1f-1ubuntu3) over (1.0.1f-1ubuntu2) ... Preparing to unpack .../ca-certificates_20140325_all.deb ... Unpacking ca-certificates (20140325) over (20130906ubuntu2) ... Preparing to unpack .../cpp_4%3a4.8.2-4ubuntu1_i386.deb ... Unpacking cpp (4:4.8.2-4ubuntu1) over (4:4.8.2-1ubuntu6) ... Preparing to unpack .../libfakeroot_1.20-3ubuntu3_i386.deb ... Unpacking libfakeroot:i386 (1.20-3ubuntu3) over (1.20-3ubuntu2) ... Preparing to unpack .../fakeroot_1.20-3ubuntu3_i386.deb ... Unpacking fakeroot (1.20-3ubuntu3) over (1.20-3ubuntu2) ... Preparing to unpack .../gcc_4%3a4.8.2-4ubuntu1_i386.deb ... Removing old gcc doc directory. Unpacking gcc (4:4.8.2-4ubuntu1) over (4:4.8.2-1ubuntu6) ... 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Setting up libcgmanager0:i386 (0.26-0ubuntu2) ... Setting up libudev1:i386 (204-10ubuntu3) ... Setting up initramfs-tools-bin (0.103ubuntu6) ... Setting up busybox-initramfs (1:1.22.0-6ubuntu1) ... Setting up kmod (16-2ubuntu4) ... Setting up module-init-tools (16-2ubuntu4) ... Setting up udev (204-10ubuntu3) ... invoke-rc.d: policy-rc.d denied execution of restart. update-initramfs: deferring update (trigger activated) Setting up initramfs-tools (0.103ubuntu6) ... update-initramfs: deferring update (trigger activated) Setting up libplymouth2:i386 (0.8.8-0ubuntu18) ... Setting up init-system-helpers (1.18) ... Setting up libgnutls26:i386 (2.12.23-15ubuntu1) ... Setting up gcc-4.8-base:i386 (4.8.2-23ubuntu1) ... Setting up cpp-4.8 (4.8.2-23ubuntu1) ... Setting up libasan0:i386 (4.8.2-23ubuntu1) ... Setting up libgcc-4.8-dev:i386 (4.8.2-23ubuntu1) ... Setting up gcc-4.8 (4.8.2-23ubuntu1) ... Setting up libstdc++-4.8-dev:i386 (4.8.2-23ubuntu1) ... Setting up g++-4.8 (4.8.2-23ubuntu1) ... Setting up openssl (1.0.1f-1ubuntu3) ... Setting up ca-certificates (20140325) ... Setting up cpp (4:4.8.2-4ubuntu1) ... Setting up libfakeroot:i386 (1.20-3ubuntu3) ... Setting up fakeroot (1.20-3ubuntu3) ... Setting up gcc (4:4.8.2-4ubuntu1) ... Setting up g++ (4:4.8.2-4ubuntu1) ... Setting up linux-libc-dev:i386 (3.15.0-1.5) ... Setting up make (4.0-7) ... Setting up mountall (2.54) ... Installing new version of config file /etc/init/mounted-proc.conf ... Setting up initscripts (2.88dsf-41ubuntu12) ... Installing new version of config file /etc/init.d/ondemand ... Setting up ifupdown (0.7.48.1ubuntu3) ... Installing new version of config file /etc/init/network-interface.conf ... Setting up upstart (1.12.1-0ubuntu7) ... Installing new version of config file /etc/upstart-xsessions ... Installing new version of config file /etc/cron.daily/upstart ... Setting up plymouth (0.8.8-0ubuntu18) ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin (2.19-0ubuntu6) ... Processing triggers for initramfs-tools (0.103ubuntu6) ... Processing triggers for ca-certificates (20140325) ... Updating certificates in /etc/ssl/certs... 7 added, 3 removed; done. Running hooks in /etc/ca-certificates/update.d....done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6027400', 'i386', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'biojava-live_1.7.1-5.dsc'] Initiating build PACKAGEBUILD-6027400 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-54-generic #82-Ubuntu SMP Tue Sep 10 20:08:42 UTC 2013 i686 Automatic build of biojava-live_1.7.1-5 on tipua by sbuild/i386 1.170.5 Build started at 20140520-2309 ****************************************************************************** biojava-live_1.7.1-5.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9), cdbs, ant Build-Depends-Indep: libcommons-dbcp-java (>= 1.1), libhsqldb-java, libcommons-collections3-java (>= 2.1), libcommons-pool-java (>= 1.1), libbytecode-java (>= 0.92.cvs.20070925), default-jdk, junit4, ant-optional Checking for already installed source dependencies... debhelper: missing cdbs: missing ant: missing libcommons-dbcp-java: missing libhsqldb-java: missing libcommons-collections3-java: missing libcommons-pool-java: missing libbytecode-java: missing default-jdk: missing junit4: missing ant-optional: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs ant libcommons-dbcp-java libhsqldb-java libcommons-collections3-java libcommons-pool-java libbytecode-java default-jdk junit4 ant-optional Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: autoconf automake autotools-dev bsdmainutils ca-certificates-java default-jre default-jre-headless dh-apparmor dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool intltool-debian java-common libasound2 libasound2-data libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libcairo2 libcroco3 libcups2 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libflac8 libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libhamcrest-java libharfbuzz0b libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libnss3-1d libnss3-nssdb libogg0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpipeline1 libpixman-1-0 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libservlet3.0-java libsigsegv2 libsndfile1 libthai-data libthai0 libtiff5 libunistring0 liburi-perl libvorbis0a libvorbisenc2 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-parser-perl libxml2 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 m4 man-db mime-support netbase openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless po-debconf python python-minimal python-scour python2.7 python2.7-minimal shared-mime-info tzdata-java ucf x11-common Suggested packages: ant-doc ant-gcj ant-optional-gcj antlr javacc junit jython libbcel-java libbsf-java libcommons-logging-java libcommons-net-java libgnumail-java libjaxp1.3-java libjdepend-java libjsch-java liblog4j1.2-java liboro-java libregexp-java libxalan2-java autoconf2.13 autoconf-archive gnu-standards autoconf-doc libtool wamerican wordlist whois vacation devscripts dh-make apparmor-easyprof gettext-doc groff equivs libasound2-plugins alsa-utils libcommons-collections3-java-doc libcommons-dbcp-java-doc cups-common librsvg2-common gvfs java-virtual-machine libhsqldb-java-doc libdata-dump-perl libjasper-runtime liblcms2-utils libcrypt-ssleay-perl ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp pcscd pulseaudio libauthen-ntlm-perl libxerces2-java-doc libxerces2-java-gcj libxml-commons-resolver1.1-java-doc less www-browser openjdk-7-demo openjdk-7-source visualvm icedtea-7-plugin libnss-mdns sun-java6-fonts fonts-ipafont-gothic fonts-ipafont-mincho ttf-wqy-microhei ttf-wqy-zenhei ttf-indic-fonts-core ttf-telugu-fonts ttf-oriya-fonts ttf-kannada-fonts ttf-bengali-fonts libmail-box-perl python-doc python-tk python-rsvg python-cairo python2.7-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libgeronimo-jta-1.1-spec-java libgl1-mesa-dri libglib2.0-data hicolor-icon-theme libgtk2.0-bin libhtml-format-perl libio-socket-inet6-perl libio-socket-ip-perl tcpd libhtml-form-perl libhttp-daemon-perl libmailtools-perl xml-core libxt-dev libgnome2-0 libgnomevfs2-0 libgconf2-4 fonts-dejavu-extra icedtea-7-jre-jamvm libmail-sendmail-perl The following NEW packages will be installed: ant ant-optional autoconf automake autotools-dev bsdmainutils ca-certificates-java cdbs debhelper default-jdk default-jre default-jre-headless dh-apparmor dh-translations file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool intltool-debian java-common junit4 libasound2 libasound2-data libasprintf0c2 libasyncns0 libatk-wrapper-java libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libbytecode-java libcairo2 libcommons-collections3-java libcommons-dbcp-java libcommons-pool-java libcroco3 libcups2 libdatrie1 libencode-locale-perl libexpat1 libfile-listing-perl libflac8 libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgif4 libgl1-mesa-glx libglapi-mesa libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libhamcrest-java libharfbuzz0b libhsqldb-java libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libio-html-perl libio-socket-ssl-perl libjasper1 libjbig0 libjpeg-turbo8 libjpeg8 liblcms2-2 liblwp-mediatypes-perl liblwp-protocol-https-perl libmagic1 libnet-http-perl libnet-ssleay-perl libnspr4 libnss3 libnss3-1d libnss3-nssdb libogg0 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 libpipeline1 libpixman-1-0 libpulse0 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libservlet3.0-java libsigsegv2 libsndfile1 libthai-data libthai0 libtiff5 libunistring0 liburi-perl libvorbis0a libvorbisenc2 libwrap0 libwww-perl libwww-robotrules-perl libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxerces2-java libxext6 libxfixes3 libxi6 libxinerama1 libxml-commons-external-java libxml-commons-resolver1.1-java libxml-parser-perl libxml2 libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 m4 man-db mime-support netbase openjdk-7-jdk openjdk-7-jre openjdk-7-jre-headless po-debconf python python-minimal python-scour python2.7 python2.7-minimal shared-mime-info tzdata-java ucf x11-common 0 upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 86.9 MB of archives. After this operation, 182 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main libexpat1 i386 2.1.0-4ubuntu1 [71.4 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 i386 1:5.18-1ubuntu1 [198 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 i386 0.18.3.2-1ubuntu1 [6360 B] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 i386 2.40.0-3 [1037 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 i386 1.3.0-1 [23.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libxau6 i386 1:1.0.8-1 [8352 B] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libxdmcp6 i386 1:1.1.1-1 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main libxcb1 i386 1.10-2ubuntu1 [40.6 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libx11-data all 2:1.6.2-1ubuntu2 [111 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main libx11-6 i386 2:1.6.2-1ubuntu2 [557 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main libxext6 i386 2:1.3.2-1 [33.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 i386 2.9.1+dfsg1-3ubuntu5 [558 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main groff-base i386 1.22.2-5 [1030 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils i386 9.0.5ubuntu1 [197 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main man-db i386 2.6.7.1-1 [851 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/main libasound2-data all 1.0.27.2-3ubuntu7 [26.3 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main libasound2 i386 1.0.27.2-3ubuntu7 [324 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main libasyncns0 i386 0.8-4ubuntu2 [11.6 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main libatk1.0-data all 2.10.0-2ubuntu2 [13.7 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libatk1.0-0 i386 2.10.0-2ubuntu2 [49.5 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libgtk2.0-common all 2.24.23-0ubuntu1 [121 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main fonts-dejavu-core all 2.34-1ubuntu1 [1024 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main ucf all 3.0029 [54.4 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main fontconfig-config all 2.11.0-0ubuntu4 [47.3 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libfreetype6 i386 2.5.2-1ubuntu4 [301 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libfontconfig1 i386 2.11.0-0ubuntu4 [123 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main libpixman-1-0 i386 0.30.2-2ubuntu1 [216 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main libxcb-render0 i386 1.10-2ubuntu1 [11.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libxcb-shm0 i386 1.10-2ubuntu1 [5622 B] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libxrender1 i386 1:0.9.8-1 [20.3 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main libcairo2 i386 1.13.0~20140204-0ubuntu1 [550 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libavahi-common-data i386 0.6.31-4ubuntu1 [21.3 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libthai-data all 0.1.20-3 [130 kB] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main libdatrie1 i386 0.2.8-1 [17.3 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main libthai0 i386 0.1.20-3 [17.1 kB] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main fontconfig i386 2.11.0-0ubuntu4 [175 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main libpango-1.0-0 i386 1.36.3-1ubuntu1 [148 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main libgraphite2-3 i386 1.2.4-1ubuntu1 [54.4 kB] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main libharfbuzz0b i386 0.9.28-1 [126 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main libpangoft2-1.0-0 i386 1.36.3-1ubuntu1 [32.6 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main libpangocairo-1.0-0 i386 1.36.3-1ubuntu1 [20.0 kB] Get:52 http://ftpmaster.internal/ubuntu/ utopic/main libxcomposite1 i386 1:0.4.4-1 [7594 B] Get:53 http://ftpmaster.internal/ubuntu/ utopic/main libxfixes3 i386 1:5.0.1-1ubuntu1 [11.5 kB] Get:54 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ca-certificates-java all 20140324 [12.3 kB] Get:65 http://ftpmaster.internal/ubuntu/ utopic/main tzdata-java all 2014c-1 [72.4 kB] Get:66 http://ftpmaster.internal/ubuntu/ utopic/main java-common all 0.52 [131 kB] Get:67 http://ftpmaster.internal/ubuntu/ utopic/main liblcms2-2 i386 2.5-0ubuntu4 [129 kB] Get:68 http://ftpmaster.internal/ubuntu/ utopic/main libnss3-1d i386 2:3.15.4-1ubuntu7 [9300 B] Get:69 http://ftpmaster.internal/ubuntu/ utopic/main libpcsclite1 i386 1.8.10-1ubuntu1 [21.0 kB] Get:70 http://ftpmaster.internal/ubuntu/ utopic/main openjdk-7-jre-headless i386 7u55-2.4.7-1ubuntu1 [41.1 MB] Get:71 http://ftpmaster.internal/ubuntu/ utopic/main default-jre-headless i386 2:1.7-52 [4064 B] Get:72 http://ftpmaster.internal/ubuntu/ utopic/main libgif4 i386 4.1.6-11 [28.4 kB] Get:73 http://ftpmaster.internal/ubuntu/ utopic/main libogg0 i386 1.3.1-1ubuntu1 [16.1 kB] Get:74 http://ftpmaster.internal/ubuntu/ utopic/main libflac8 i386 1.3.0-2 [98.1 kB] Get:75 http://ftpmaster.internal/ubuntu/ utopic/main libvorbis0a i386 1.3.2-1.3ubuntu1 [83.1 kB] Get:76 http://ftpmaster.internal/ubuntu/ utopic/main libvorbisenc2 i386 1.3.2-1.3ubuntu1 [66.9 kB] Get:77 http://ftpmaster.internal/ubuntu/ utopic/main libsndfile1 i386 1.0.25-9 [143 kB] Get:78 http://ftpmaster.internal/ubuntu/ utopic/main libwrap0 i386 7.6.q-25 [45.8 kB] Get:79 http://ftpmaster.internal/ubuntu/ utopic/main libpulse0 i386 1:4.0-0ubuntu11 [211 kB] Get:80 http://ftpmaster.internal/ubuntu/ utopic/main x11-common all 1:7.7+1ubuntu8 [49.8 kB] Get:81 http://ftpmaster.internal/ubuntu/ utopic/main libxtst6 i386 2:1.2.2-1 [13.8 kB] Get:82 http://ftpmaster.internal/ubuntu/ utopic/main libglapi-mesa i386 10.1.3-0ubuntu1 [21.4 kB] Get:83 http://ftpmaster.internal/ubuntu/ utopic/main libx11-xcb1 i386 2:1.6.2-1ubuntu2 [9396 B] Get:84 http://ftpmaster.internal/ubuntu/ utopic/main libxcb-dri2-0 i386 1.10-2ubuntu1 [7150 B] Get:85 http://ftpmaster.internal/ubuntu/ utopic/main libxcb-dri3-0 i386 1.10-2ubuntu1 [5292 B] Get:86 http://ftpmaster.internal/ubuntu/ utopic/main libxcb-glx0 i386 1.10-2ubuntu1 [21.6 kB] Get:87 http://ftpmaster.internal/ubuntu/ utopic/main libxcb-present0 i386 1.10-2ubuntu1 [5412 B] Get:88 http://ftpmaster.internal/ubuntu/ utopic/main libxcb-sync1 i386 1.10-2ubuntu1 [8418 B] Get:89 http://ftpmaster.internal/ubuntu/ utopic/main libxshmfence1 i386 1.1-3 [4884 B] Get:90 http://ftpmaster.internal/ubuntu/ utopic/main libxxf86vm1 i386 1:1.1.3-1 [11.8 kB] Get:91 http://ftpmaster.internal/ubuntu/ utopic/main libgl1-mesa-glx i386 10.1.3-0ubuntu1 [112 kB] Get:92 http://ftpmaster.internal/ubuntu/ utopic/main openjdk-7-jre i386 7u55-2.4.7-1ubuntu1 [178 kB] Get:93 http://ftpmaster.internal/ubuntu/ utopic/main default-jre i386 2:1.7-52 [1010 B] Get:94 http://ftpmaster.internal/ubuntu/ utopic/main libatk-wrapper-java all 0.30.4-4 [30.2 kB] Get:95 http://ftpmaster.internal/ubuntu/ utopic/main libatk-wrapper-java-jni i386 0.30.4-4 [25.0 kB] Get:96 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 i386 0.6.8-2ubuntu1 [81.1 kB] Get:97 http://ftpmaster.internal/ubuntu/ utopic/main libsigsegv2 i386 2.10-2 [14.8 kB] Get:98 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 i386 0.9.3-5ubuntu3 [272 kB] Get:99 http://ftpmaster.internal/ubuntu/ utopic/main libpython2.7-minimal i386 2.7.6-8 [306 kB] Get:100 http://ftpmaster.internal/ubuntu/ utopic/main python2.7-minimal i386 2.7.6-8 [1118 kB] Get:101 http://ftpmaster.internal/ubuntu/ utopic/main file i386 1:5.18-1ubuntu1 [19.7 kB] Get:102 http://ftpmaster.internal/ubuntu/ utopic/main mime-support all 3.55ubuntu1 [31.1 kB] Get:103 http://ftpmaster.internal/ubuntu/ utopic/main netbase all 5.2 [12.9 kB] Get:104 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base i386 0.18.3.2-1ubuntu1 [47.6 kB] Get:105 http://ftpmaster.internal/ubuntu/ utopic/main libxml-commons-resolver1.1-java all 1.2-7build1 [91.6 kB] Get:106 http://ftpmaster.internal/ubuntu/ utopic/main libxml-commons-external-java all 1.4.01-2build1 [245 kB] Get:107 http://ftpmaster.internal/ubuntu/ utopic/main libxerces2-java all 2.11.0-7 [1362 kB] Get:108 http://ftpmaster.internal/ubuntu/ utopic/main ant all 1.9.4-1 [1880 kB] Get:109 http://ftpmaster.internal/ubuntu/ utopic/main ant-optional all 1.9.4-1 [305 kB] Get:110 http://ftpmaster.internal/ubuntu/ utopic/main m4 i386 1.4.17-4 [190 kB] Get:111 http://ftpmaster.internal/ubuntu/ utopic/main autoconf all 2.69-6 [322 kB] Get:112 http://ftpmaster.internal/ubuntu/ utopic/main autotools-dev all 20140510.1 [39.7 kB] Get:113 http://ftpmaster.internal/ubuntu/ utopic/main automake all 1:1.14.1-2ubuntu1 [510 kB] Get:114 http://ftpmaster.internal/ubuntu/ utopic/main gettext i386 0.18.3.2-1ubuntu1 [816 kB] Get:115 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:116 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:117 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.95~2430-0ubuntu5 [11.3 kB] Get:118 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20140228ubuntu1 [607 kB] Get:119 http://ftpmaster.internal/ubuntu/ utopic/main liburi-perl all 1.60-1 [89.6 kB] Get:120 http://ftpmaster.internal/ubuntu/ utopic/main libencode-locale-perl all 1.03-1 [12.4 kB] Get:121 http://ftpmaster.internal/ubuntu/ utopic/main libhttp-date-perl all 6.02-1 [10.4 kB] Get:122 http://ftpmaster.internal/ubuntu/ utopic/main libfile-listing-perl all 6.04-1 [9774 B] Get:123 http://ftpmaster.internal/ubuntu/ utopic/main libhtml-tagset-perl all 3.20-2 [13.5 kB] Get:124 http://ftpmaster.internal/ubuntu/ utopic/main libhtml-parser-perl i386 3.71-1build1 [97.8 kB] Get:125 http://ftpmaster.internal/ubuntu/ utopic/main libhtml-tree-perl all 5.03-1 [215 kB] Get:126 http://ftpmaster.internal/ubuntu/ utopic/main libio-html-perl all 1.00-1 [15.7 kB] Get:127 http://ftpmaster.internal/ubuntu/ utopic/main liblwp-mediatypes-perl all 6.02-1 [21.7 kB] Get:128 http://ftpmaster.internal/ubuntu/ utopic/main libhttp-message-perl all 6.06-1 [78.7 kB] Get:129 http://ftpmaster.internal/ubuntu/ utopic/main libhttp-cookies-perl all 6.00-2 [23.3 kB] Get:130 http://ftpmaster.internal/ubuntu/ utopic/main libhttp-negotiate-perl all 6.00-2 [13.4 kB] Get:131 http://ftpmaster.internal/ubuntu/ utopic/main libnet-ssleay-perl i386 1.61-1 [253 kB] Get:132 http://ftpmaster.internal/ubuntu/ utopic/main libio-socket-ssl-perl all 1.965-1ubuntu1 [73.7 kB] Get:133 http://ftpmaster.internal/ubuntu/ utopic/main libnet-http-perl all 6.06-1 [24.2 kB] Get:134 http://ftpmaster.internal/ubuntu/ utopic/main liblwp-protocol-https-perl all 6.04-3 [7802 B] Get:135 http://ftpmaster.internal/ubuntu/ utopic/main libwww-robotrules-perl all 6.01-1 [14.1 kB] Get:136 http://ftpmaster.internal/ubuntu/ utopic/main libwww-perl all 6.06-1 [146 kB] Get:137 http://ftpmaster.internal/ubuntu/ utopic/main libxml-parser-perl i386 2.41-1build3 [299 kB] Get:138 http://ftpmaster.internal/ubuntu/ utopic/main intltool all 0.50.2-2 [52.0 kB] Get:139 http://ftpmaster.internal/ubuntu/ utopic/main dh-translations all 121 [21.6 kB] Get:140 http://ftpmaster.internal/ubuntu/ utopic/main libpython2.7-stdlib i386 2.7.6-8 [1842 kB] Get:141 http://ftpmaster.internal/ubuntu/ utopic/main python2.7 i386 2.7.6-8 [197 kB] Get:142 http://ftpmaster.internal/ubuntu/ utopic/main python-minimal i386 2.7.6-1 [28.0 kB] Get:143 http://ftpmaster.internal/ubuntu/ utopic/main libpython-stdlib i386 2.7.6-1 [7452 B] Get:144 http://ftpmaster.internal/ubuntu/ utopic/main python i386 2.7.6-1 [135 kB] Get:145 http://ftpmaster.internal/ubuntu/ utopic/main python-scour all 0.26-3build1 [40.5 kB] Get:146 http://ftpmaster.internal/ubuntu/ utopic/main cdbs all 0.4.122ubuntu2 [42.1 kB] Get:147 http://ftpmaster.internal/ubuntu/ utopic/main openjdk-7-jdk i386 7u55-2.4.7-1ubuntu1 [16.0 MB] Get:148 http://ftpmaster.internal/ubuntu/ utopic/main default-jdk i386 2:1.7-52 [1006 B] Get:149 http://ftpmaster.internal/ubuntu/ utopic/main libhamcrest-java all 1.3-5ubuntu1 [373 kB] Get:150 http://ftpmaster.internal/ubuntu/ utopic/main junit4 all 4.11-2 [227 kB] Get:151 http://ftpmaster.internal/ubuntu/ utopic/universe libbytecode-java all 0.92.svn.20090106-1.1 [87.9 kB] Get:152 http://ftpmaster.internal/ubuntu/ utopic/main libcommons-collections3-java all 3.2.1-7 [592 kB] Get:153 http://ftpmaster.internal/ubuntu/ utopic/main libcommons-pool-java all 1.6-2 [105 kB] Get:154 http://ftpmaster.internal/ubuntu/ utopic/main libcommons-dbcp-java all 1.4-3ubuntu1 [149 kB] Get:155 http://ftpmaster.internal/ubuntu/ utopic/main libservlet3.0-java all 7.0.53-1 [301 kB] Get:156 http://ftpmaster.internal/ubuntu/ utopic/universe libhsqldb-java all 2.2.9+dfsg-4ubuntu1 [1524 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 86.9 MB in 6s (14.2 MB/s) Selecting previously unselected package libexpat1:i386. 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Setting up libmagic1:i386 (1:5.18-1ubuntu1) ... Setting up libasprintf0c2:i386 (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:i386 (2.40.0-3) ... No schema files found: doing nothing. Setting up libpipeline1:i386 (1.3.0-1) ... Setting up libxau6:i386 (1:1.0.8-1) ... Setting up libxdmcp6:i386 (1:1.1.1-1) ... Setting up libxcb1:i386 (1.10-2ubuntu1) ... Setting up libx11-data (2:1.6.2-1ubuntu2) ... Setting up libx11-6:i386 (2:1.6.2-1ubuntu2) ... Setting up libxext6:i386 (2:1.3.2-1) ... Setting up libxml2:i386 (2.9.1+dfsg1-3ubuntu5) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libasound2-data (1.0.27.2-3ubuntu7) ... Setting up libasound2:i386 (1.0.27.2-3ubuntu7) ... Setting up libasyncns0:i386 (0.8-4ubuntu2) ... Setting up libatk1.0-data (2.10.0-2ubuntu2) ... Setting up libatk1.0-0:i386 (2.10.0-2ubuntu2) ... Setting up libgtk2.0-common (2.24.23-0ubuntu1) ... Setting up fonts-dejavu-core (2.34-1ubuntu1) ... Setting up ucf (3.0029) ... Setting up fontconfig-config (2.11.0-0ubuntu4) ... Setting up libfreetype6:i386 (2.5.2-1ubuntu4) ... Setting up libfontconfig1:i386 (2.11.0-0ubuntu4) ... Setting up libpixman-1-0:i386 (0.30.2-2ubuntu1) ... Setting up libxcb-render0:i386 (1.10-2ubuntu1) ... Setting up libxcb-shm0:i386 (1.10-2ubuntu1) ... Setting up libxrender1:i386 (1:0.9.8-1) ... Setting up libcairo2:i386 (1.13.0~20140204-0ubuntu1) ... Setting up libavahi-common-data:i386 (0.6.31-4ubuntu1) ... Setting up libavahi-common3:i386 (0.6.31-4ubuntu1) ... Setting up libavahi-client3:i386 (0.6.31-4ubuntu1) ... Setting up libcups2:i386 (1.7.2-3) ... Setting up libjpeg-turbo8:i386 (1.3.0-0ubuntu2) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjasper1:i386 (1.900.1-14ubuntu3) ... Setting up libjbig0:i386 (2.0-2ubuntu4.1) ... Setting up libtiff5:i386 (4.0.3-8ubuntu1) ... Setting up libgdk-pixbuf2.0-common (2.30.7-1) ... Setting up libgdk-pixbuf2.0-0:i386 (2.30.7-1) ... Setting up libthai-data (0.1.20-3) ... Setting up libdatrie1:i386 (0.2.8-1) ... Setting up libthai0:i386 (0.1.20-3) ... Setting up fontconfig (2.11.0-0ubuntu4) ... Regenerating fonts cache... done. Setting up libpango-1.0-0:i386 (1.36.3-1ubuntu1) ... Setting up libgraphite2-3:i386 (1.2.4-1ubuntu1) ... Setting up libharfbuzz0b:i386 (0.9.28-1) ... Setting up libpangoft2-1.0-0:i386 (1.36.3-1ubuntu1) ... Setting up libpangocairo-1.0-0:i386 (1.36.3-1ubuntu1) ... Setting up libxcomposite1:i386 (1:0.4.4-1) ... Setting up libxfixes3:i386 (1:5.0.1-1ubuntu1) ... Setting up libxcursor1:i386 (1:1.1.14-1) ... Setting up libxdamage1:i386 (1:1.1.4-1ubuntu1) ... Setting up libxi6:i386 (2:1.7.1.901-1ubuntu1) ... Setting up libxinerama1:i386 (2:1.1.3-1) ... Setting up libxrandr2:i386 (2:1.4.2-1) ... Setting up shared-mime-info (1.2-0ubuntu3) ... Setting up libgtk2.0-0:i386 (2.24.23-0ubuntu1) ... Setting up libnspr4:i386 (2:4.10.2-1ubuntu1) ... Setting up tzdata-java (2014c-1) ... Setting up java-common (0.52) ... Setting up liblcms2-2:i386 (2.5-0ubuntu4) ... Setting up libpcsclite1:i386 (1.8.10-1ubuntu1) ... Setting up libgif4:i386 (4.1.6-11) ... Setting up libogg0:i386 (1.3.1-1ubuntu1) ... Setting up libflac8:i386 (1.3.0-2) ... Setting up libvorbis0a:i386 (1.3.2-1.3ubuntu1) ... Setting up libvorbisenc2:i386 (1.3.2-1.3ubuntu1) ... Setting up libsndfile1:i386 (1.0.25-9) ... Setting up libwrap0:i386 (7.6.q-25) ... Setting up libpulse0:i386 (1:4.0-0ubuntu11) ... Setting up x11-common (1:7.7+1ubuntu8) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libxtst6:i386 (2:1.2.2-1) ... Setting up libglapi-mesa:i386 (10.1.3-0ubuntu1) ... Setting up libx11-xcb1:i386 (2:1.6.2-1ubuntu2) ... Setting up libxcb-dri2-0:i386 (1.10-2ubuntu1) ... Setting up libxcb-dri3-0:i386 (1.10-2ubuntu1) ... Setting up libxcb-glx0:i386 (1.10-2ubuntu1) ... Setting up libxcb-present0:i386 (1.10-2ubuntu1) ... Setting up libxcb-sync1:i386 (1.10-2ubuntu1) ... Setting up libxshmfence1:i386 (1.1-3) ... Setting up libxxf86vm1:i386 (1:1.1.3-1) ... Setting up libgl1-mesa-glx:i386 (10.1.3-0ubuntu1) ... update-alternatives: using /usr/lib/i386-linux-gnu/mesa/ld.so.conf to provide /etc/ld.so.conf.d/i386-linux-gnu_GL.conf (i386-linux-gnu_gl_conf) in auto mode Setting up libcroco3:i386 (0.6.8-2ubuntu1) ... Setting up libsigsegv2:i386 (2.10-2) ... Setting up libunistring0:i386 (0.9.3-5ubuntu3) ... Setting up libpython2.7-minimal:i386 (2.7.6-8) ... Setting up python2.7-minimal (2.7.6-8) ... Linking and byte-compiling packages for runtime python2.7... Setting up file (1:5.18-1ubuntu1) ... Setting up mime-support (3.55ubuntu1) ... Setting up netbase (5.2) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up libxml-commons-resolver1.1-java (1.2-7build1) ... Setting up libxml-commons-external-java (1.4.01-2build1) ... Setting up libxerces2-java (2.11.0-7) ... Setting up m4 (1.4.17-4) ... Setting up autoconf (2.69-6) ... Setting up autotools-dev (20140510.1) ... Setting up automake (1:1.14.1-2ubuntu1) ... update-alternatives: using /usr/bin/automake-1.14 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up dh-apparmor (2.8.95~2430-0ubuntu5) ... Setting up debhelper (9.20140228ubuntu1) ... Setting up liburi-perl (1.60-1) ... Setting up libencode-locale-perl (1.03-1) ... Setting up libhttp-date-perl (6.02-1) ... Setting up libfile-listing-perl (6.04-1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up libhtml-parser-perl (3.71-1build1) ... Setting up libhtml-tree-perl (5.03-1) ... Setting up libio-html-perl (1.00-1) ... Setting up liblwp-mediatypes-perl (6.02-1) ... Setting up libhttp-message-perl (6.06-1) ... Setting up libhttp-cookies-perl (6.00-2) ... Setting up libhttp-negotiate-perl (6.00-2) ... Setting up libnet-ssleay-perl (1.61-1) ... Setting up libio-socket-ssl-perl (1.965-1ubuntu1) ... Setting up libnet-http-perl (6.06-1) ... Setting up libwww-robotrules-perl (6.01-1) ... Setting up libpython2.7-stdlib:i386 (2.7.6-8) ... Setting up python2.7 (2.7.6-8) ... Setting up python-minimal (2.7.6-1) ... Setting up libpython-stdlib:i386 (2.7.6-1) ... Setting up python (2.7.6-1) ... Setting up python-scour (0.26-3build1) ... Setting up libhamcrest-java (1.3-5ubuntu1) ... Setting up libcommons-collections3-java (3.2.1-7) ... Setting up libcommons-pool-java (1.6-2) ... Setting up libcommons-dbcp-java (1.4-3ubuntu1) ... Setting up libservlet3.0-java (7.0.53-1) ... Setting up libhsqldb-java (2.2.9+dfsg-4ubuntu1) ... Setting up libnss3-nssdb (2:3.15.4-1ubuntu7) ... Setting up libnss3:i386 (2:3.15.4-1ubuntu7) ... Setting up libnss3-1d:i386 (2:3.15.4-1ubuntu7) ... Setting up openjdk-7-jre-headless:i386 (7u55-2.4.7-1ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up default-jre-headless (2:1.7-52) ... Setting up libatk-wrapper-java (0.30.4-4) ... Setting up libatk-wrapper-java-jni:i386 (0.30.4-4) ... Setting up openjdk-7-jre:i386 (7u55-2.4.7-1ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode Setting up default-jre (2:1.7-52) ... Setting up ant (1.9.4-1) ... Setting up ant-optional (1.9.4-1) ... Setting up liblwp-protocol-https-perl (6.04-3) ... Setting up libwww-perl (6.06-1) ... Setting up libxml-parser-perl (2.41-1build3) ... Setting up intltool (0.50.2-2) ... Setting up dh-translations (121) ... Setting up cdbs (0.4.122ubuntu2) ... Setting up openjdk-7-jdk:i386 (7u55-2.4.7-1ubuntu1) ... update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-7-openjdk-i386/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode Setting up default-jdk (2:1.7-52) ... Setting up junit4 (4.11-2) ... Setting up libbytecode-java (0.92.svn.20090106-1.1) ... Setting up ca-certificates-java (20140324) ... Adding debian:RSA_Root_Certificate_1.pem Adding debian:CNNIC_ROOT.pem Adding debian:ComSign_CA.pem Adding debian:ComSign_Secured_CA.pem Adding debian:SG_TRUST_SERVICES_RACINE.pem Adding debian:Buypass_Class_3_CA_1.pem Adding debian:AC_Raíz_Certicámara_S.A..pem Adding debian:TC_TrustCenter_Universal_CA_I.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Taiwan_GRCA.pem Adding debian:NetLock_Business_=Class_B=_Root.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem Adding debian:CA_Disig.pem Adding debian:ValiCert_Class_2_VA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Certum_Root_CA.pem Adding debian:ApplicationCA_-_Japanese_Government.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:Secure_Global_CA.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:Buypass_Class_2_CA_1.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem Adding debian:UTN_USERFirst_Email_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:ValiCert_Class_1_VA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem Adding debian:Entrust.net_Secure_Server_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:spi-cacert-2008.pem Adding debian:Sonera_Class_1_Root_CA.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:PSCProcert.pem Adding debian:NetLock_Qualified_=Class_QA=_Root.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:TC_TrustCenter_Class_2_CA_II.pem Adding debian:Root_CA_Generalitat_Valenciana.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:Juur-SK.pem Adding debian:Certigna.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:AffirmTrust_Networking.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:ACCVRAIZ1.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:NetLock_Notary_=Class_A=_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:TC_TrustCenter_Class_3_CA_II.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:Equifax_Secure_CA.pem Adding debian:SwissSign_Platinum_CA_-_G2.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:IGC_A.pem Adding debian:Equifax_Secure_Global_eBusiness_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:StartCom_Certification_Authority_2.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:America_Online_Root_Certification_Authority_1.pem Adding debian:America_Online_Root_Certification_Authority_2.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:NetLock_Express_=Class_C=_Root.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:Equifax_Secure_eBusiness_CA_1.pem Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem Adding debian:A-Trust-nQual-03.pem Adding debian:EC-ACC.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:StartCom_Certification_Authority_G2.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem Adding debian:UTN_DATACorp_SGC_Root_CA.pem Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem Adding debian:AddTrust_External_Root.pem Adding debian:Izenpe.com.pem Adding debian:Thawte_Premium_Server_CA.pem Adding debian:StartCom_Certification_Authority.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_2.pem Adding debian:Thawte_Server_CA.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:GTE_CyberTrust_Global_Root.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA.pem Adding debian:RSA_Security_2048_v3.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:Staat_der_Nederlanden_Root_CA.pem Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem Adding debian:ACEDICOM_Root.pem Adding debian:AffirmTrust_Premium.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:TDC_Internet_Root_CA.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem done. Processing triggers for libc-bin (2.19-0ubuntu6) ... Processing triggers for ca-certificates (20140325) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d.... done. done. Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-0ubuntu6 make_4.0-7 dpkg-dev_1.17.9ubuntu1 gcc-4.8_4.8.2-23ubuntu1 g++-4.8_4.8.2-23ubuntu1 binutils_2.24.51.20140425-0ubuntu2 libstdc++-4.8-dev_4.8.2-23ubuntu1 libstdc++6_4.9.0-4ubuntu4 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Tue May 20 13:10:09 2014 UTC using RSA key ID 326D8438 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./biojava-live_1.7.1-5.dsc dpkg-source: info: extracting biojava-live in biojava-live-1.7.1 dpkg-source: info: unpacking biojava-live_1.7.1.orig.tar.gz dpkg-source: info: unpacking biojava-live_1.7.1-5.debian.tar.xz dpkg-source: info: applying buildxml.patch dpkg-buildpackage: source package biojava-live dpkg-buildpackage: source version 1:1.7.1-5 dpkg-buildpackage: source distribution unstable dpkg-source --before-build biojava-live-1.7.1 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -f build-stamp # Add here commands to clean up after the build process. ant clean Buildfile: /build/buildd/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-7-openjdk-i386/jre [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true clean: BUILD SUCCESSFUL Total time: 0 seconds dh_clean debian/rules build dh_testdir find . -name "*.java" -o -name ReadMe -o -name "*.fa" -o -name "*.html" | xargs -r chmod 644 # circumvent Debian's difficulties with libjgrapht - deleting all usage of that library rm -rf src/org/biojavax/bio/phylo/io/nexus/ \ src/org/biojavax/bio/phylo/DistanceBasedTreeMethod.java \ src/org/biojavax/bio/phylo/ParsimonyTreeMethod.java # Add here commands to compile the package. ANT_OPTS="-Xms1024m -Xmx1024m" ant package-biojava Buildfile: /build/buildd/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-7-openjdk-i386/jre [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true prepare: [mkdir] Created dir: /build/buildd/biojava-live-1.7.1/ant-build prepare-biojava: [mkdir] Created dir: /build/buildd/biojava-live-1.7.1/ant-build/classes/biojava [mkdir] Created dir: /build/buildd/biojava-live-1.7.1/ant-build/docs/biojava [mkdir] Created dir: /build/buildd/biojava-live-1.7.1/ant-build/docs/check/biojava compile-biojava: [javac] /build/buildd/biojava-live-1.7.1/build.xml:246: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 1444 source files to /build/buildd/biojava-live-1.7.1/ant-build/classes/biojava [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] /build/buildd/biojava-live-1.7.1/src/org/biojava/bio/structure/Structure.java:9: warning: GetEndPointInfoAgainException is internal proprietary API and may be removed in a future release [javac] * http://www.gnu.org/copyleft/lesser.html [javac] ^ [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 2 warnings [javac] Creating empty /build/buildd/biojava-live-1.7.1/ant-build/classes/biojava/org/biojava/bio/program/fastq/package-info.class package-biojava: [jar] Building jar: /build/buildd/biojava-live-1.7.1/ant-build/biojava.jar BUILD SUCCESSFUL Total time: 10 seconds #ant compile-demos ant javadocs-biojava Buildfile: /build/buildd/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-7-openjdk-i386/jre [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true prepare: prepare-biojava: javadocs-biojava: [javadoc] Generating Javadoc [javadoc] Javadoc execution [javadoc] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javadoc] Loading source files for package org.biojava.bibliography... [javadoc] Loading source files for package org.biojava.bio... [javadoc] Loading source files for package org.biojava.bio.alignment... 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[javadoc] Loading source files for package org.biojava.bio.program.phred... [javadoc] Loading source files for package org.biojava.bio.program.sax... [javadoc] Loading source files for package org.biojava.bio.program.sax.blastxml... [javadoc] Loading source files for package org.biojava.bio.program.scf... [javadoc] Loading source files for package org.biojava.bio.program.ssaha... [javadoc] Loading source files for package org.biojava.bio.program.ssbind... [javadoc] Loading source files for package org.biojava.bio.program.tagvalue... [javadoc] Loading source files for package org.biojava.bio.program.unigene... [javadoc] Loading source files for package org.biojava.bio.program.xff... [javadoc] Loading source files for package org.biojava.bio.program.xml... [javadoc] Loading source files for package org.biojava.bio.proteomics... [javadoc] Loading source files for package org.biojava.bio.proteomics.aaindex... [javadoc] Loading source files for package org.biojava.bio.search... [javadoc] Loading source files for package org.biojava.bio.seq... [javadoc] Loading source files for package org.biojava.bio.seq.db... [javadoc] Loading source files for package org.biojava.bio.seq.db.biofetch... [javadoc] Loading source files for package org.biojava.bio.seq.db.biosql... [javadoc] Loading source files for package org.biojava.bio.seq.db.emblcd... [javadoc] Loading source files for package org.biojava.bio.seq.db.flat... [javadoc] Loading source files for package org.biojava.bio.seq.distributed... [javadoc] Loading source files for package org.biojava.bio.seq.filter... [javadoc] Loading source files for package org.biojava.bio.seq.homol... [javadoc] Loading source files for package org.biojava.bio.seq.impl... [javadoc] Loading source files for package org.biojava.bio.seq.io... [javadoc] Loading source files for package org.biojava.bio.seq.io.agave... [javadoc] Loading source files for package org.biojava.bio.seq.io.filterxml... 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[javadoc] Loading source files for package org.biojavax.ga.util... [javadoc] Loading source files for package org.biojavax.ontology... [javadoc] Loading source files for package org.biojavax.utils... [javadoc] Constructing Javadoc information... [javadoc] javadoc: warning - Error fetching URL: http://java.sun.com/j2se/1.5.0/docs/api/package-list [javadoc] Standard Doclet version 1.7.0_55 [javadoc] Building tree for all the packages and classes... [javadoc] /build/buildd/biojava-live-1.7.1/src/org/biojava/bio/alignment/SubstitutionMatrix.java:220: warning - @return tag has no arguments. [javadoc] /build/buildd/biojava-live-1.7.1/src/org/biojava/bio/alignment/SubstitutionMatrix.java:237: warning - @return tag has no arguments. [javadoc] /build/buildd/biojava-live-1.7.1/src/org/biojava/bio/structure/io/mmcif/SimpleMMcifConsumer.java:223: warning - @return tag has no arguments. [javadoc] /build/buildd/biojava-live-1.7.1/src/org/biojava/bio/structure/io/mmcif/SimpleMMcifParser.java:378: warning - @return tag has no arguments. [javadoc] /build/buildd/biojava-live-1.7.1/src/org/biojava/bio/structure/server/PrepareIndexFile.java:175: warning - @return tag has no arguments. [javadoc] Generating /build/buildd/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/package-summary.html... [javadoc] Copying file /build/buildd/biojava-live-1.7.1/src/org/biojava/bibliography/doc-files/BibRefQuery_corba.jpg to directory /build/buildd/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/doc-files... [javadoc] Copying file /build/buildd/biojava-live-1.7.1/src/org/biojava/bibliography/doc-files/BibRefQuery_soap.jpg to directory /build/buildd/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/doc-files... [javadoc] Copying file /build/buildd/biojava-live-1.7.1/src/org/biojava/bibliography/doc-files/BibRefQuery_simple.jpg to directory /build/buildd/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/doc-files... [javadoc] Copying file /build/buildd/biojava-live-1.7.1/src/org/biojava/bibliography/doc-files/bibobjects_java.jpg to directory /build/buildd/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/doc-files... [javadoc] Building index for all the packages and classes... [javadoc] Building index for all classes... [javadoc] Generating /build/buildd/biojava-live-1.7.1/ant-build/docs/biojava/help-doc.html... [javadoc] 7 warnings BUILD SUCCESSFUL Total time: 25 seconds touch build-stamp /usr/bin/fakeroot debian/rules binary dh_testdir dh_testroot dh_prep dh_installdirs cp ant-build/biojava.jar /build/buildd/biojava-live-1.7.1/debian/libbiojava1.7-java/usr/share/java/biojava1.7.1.jar d=/build/buildd/biojava-live-1.7.1/debian/libbiojava-java-doc/usr/share/doc/libbiojava-java/api; \ [ -d $d ] || mkdir -p $d ; \ cp -r ant-build/docs/biojava/* $d for i in /build/buildd/biojava-live-1.7.1/debian/libbiojava-java*; do \ if [ -d "" ]; then \ find -name ".svn" | xargs -r rm -r ; \ fi ; \ done ant runtests Buildfile: /build/buildd/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-7-openjdk-i386/jre [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true prepare: prepare-tests: [mkdir] Created dir: /build/buildd/biojava-live-1.7.1/ant-build/classes/tests [mkdir] Created dir: /build/buildd/biojava-live-1.7.1/ant-build/docs/tests [mkdir] Created dir: /build/buildd/biojava-live-1.7.1/reports/tests prepare-biojava: compile-biojava: [javac] /build/buildd/biojava-live-1.7.1/build.xml:246: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds package-biojava: compile-tests: [javac] /build/buildd/biojava-live-1.7.1/build.xml:264: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 184 source files to /build/buildd/biojava-live-1.7.1/ant-build/classes/tests [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 1 warning runtests: [echo] Running tests: ** [junit] Running org.biojava.bio.AnnotationTypeTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 sec [junit] Running org.biojava.bio.MergeAnnotationTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.alignment.FlexibleAlignmentTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.alignment.SubstitutionMatrixTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.dist.DistSerTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.104 sec [junit] Running org.biojava.bio.dist.DistributionTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.dist.DistributionToolsTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.27 sec [junit] Running org.biojava.bio.dist.TranslatedDistributionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.dp.DPSerializationTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.051 sec [junit] Running org.biojava.bio.dp.EmissionStateEventTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.dp.MarkovModelEventTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.molbio.RestrictionEnzymeManagerTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.076 sec [junit] Running org.biojava.bio.molbio.RestrictionEnzymeTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.program.fastq.FastqBuilderTest [junit] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.program.fastq.FastqTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.program.fastq.FastqVariantTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.program.fastq.IlluminaFastqReaderTest [junit] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec [junit] Running org.biojava.bio.program.fastq.IlluminaFastqWriterTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.program.fastq.SangerFastqReaderTest [junit] Tests run: 27, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec [junit] Running org.biojava.bio.program.fastq.SangerFastqWriterTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.program.fastq.SolexaFastqReaderTest [junit] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 sec [junit] Running org.biojava.bio.program.fastq.SolexaFastqWriterTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.program.indexdb.IndexToolsTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.112 sec [junit] Running org.biojava.bio.program.phred.PhredToolsTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec [junit] Running org.biojava.bio.program.sax.BlastTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.146 sec [junit] Running org.biojava.bio.program.sax.blastxml.BlastXMLTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.069 sec [junit] Running org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.08 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.444 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.375 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.611 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.508 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.516 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.617 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.497 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.507 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.623 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.015 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.079 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.299 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.078 sec [junit] Running org.biojava.bio.proteomics.IsoelectricPointCalcTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.proteomics.MassCalcTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.proteomics.aaindex.AAindexStreamReaderTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.106 sec [junit] Running org.biojava.bio.proteomics.aaindex.AAindexTest [junit] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.bio.search.MaxMismatchPatternTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.search.SeqContentPatternTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.seq.CircularSequenceTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec [junit] Running org.biojava.bio.seq.DNAToolsTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.seq.FeatureFilterTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec [junit] Running org.biojava.bio.seq.FeatureHolderUtilsTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.seq.FilterUtilsTest [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 sec [junit] Running org.biojava.bio.seq.MergeFeatureHolderTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.seq.NewSimpleAssemblyTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 sec [junit] Running org.biojava.bio.seq.ProteinToolsTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.seq.RNAToolsTest [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.seq.SeqSerializationTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 sec [junit] Running org.biojava.bio.seq.SimpleAssemblyTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.seq.db.EmblCDROMIndexStoreTest [junit] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec [junit] Running org.biojava.bio.seq.db.HashSequenceDBTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest [junit] Tests run: 5, Failures: 0, Errors: 5, Skipped: 0, Time elapsed: 0.462 sec [junit] Test org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest FAILED [junit] Running org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.seq.filter.FilterTransformerTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 sec [junit] Running org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.seq.impl.GappedSequenceTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.seq.impl.SubSequenceTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec [junit] Running org.biojava.bio.seq.impl.ViewSeqSerializationTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 sec [junit] Running org.biojava.bio.seq.impl.ViewSequenceTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.bio.seq.io.LocationFormatterTest [junit] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec [junit] Running org.biojava.bio.seq.io.MSFAlignmentFormatTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.seq.io.SeqIOToolsTest [junit] Tests run: 4, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.569 sec [junit] Test org.biojava.bio.seq.io.SeqIOToolsTest FAILED [junit] Running org.biojava.bio.seq.io.SmartSequenceBuilderTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.437 sec [junit] Running org.biojava.bio.seq.io.SymbolListCharSequenceTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.seq.io.filterxml.FilterXMLTest [junit] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 sec [junit] Running org.biojava.bio.seq.project.ProjectedFeatureHolderTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.bio.structure.MMcifTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.497 sec [junit] Running org.biojava.bio.structure.PDBFileParserTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.bio.structure.PdbFileFormat30Test [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec [junit] Running org.biojava.bio.structure.SourceCompoundTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.371 sec [junit] Running org.biojava.bio.structure.StructurePairAlignerTest [junit] Tests run: 1, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 1.206 sec [junit] Test org.biojava.bio.structure.StructurePairAlignerTest FAILED [junit] Running org.biojava.bio.structure.StructureTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec [junit] Running org.biojava.bio.structure.StructureToolsTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec [junit] Running org.biojava.bio.symbol.AlphabetManagerTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.symbol.AlphabetSerializationTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.058 sec [junit] Running org.biojava.bio.symbol.BetweenLocationTest [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.symbol.CircularLocationTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.symbol.CodonPrefToolsTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 sec [junit] Running org.biojava.bio.symbol.CompoundLocationTest [junit] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec [junit] Running org.biojava.bio.symbol.CrossProductAlphabetIndexTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.387 sec [junit] Running org.biojava.bio.symbol.CrossProductTokenizationTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.symbol.DoubleAlphabetTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.FundamentalAtomicSymbolEventTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.symbol.GappedSymbolListTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.IndexedNoAmbPackTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.IntegerAlphabetTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.LinearAlphabetIndexTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.MergeLocationTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.MotifToolsTest [junit] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.symbol.NameTokenizationTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.PointLocationTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.RangeLocationTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.SimpleAtomicSymbolEventTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.SimpleBasisSymbolEventTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.SimpleCodonPrefTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.symbol.SimpleSymbolEventTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.SimpleSymbolListTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.SimpleWobbleDistributionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.SymbolListTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.288 sec [junit] Running org.biojava.bio.symbol.SymbolSerializationTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.symbol.TranslationTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.UkkonenSuffixTreeTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.077 sec [junit] Running org.biojava.directory.OBDARegistryParserTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.directory.RegistryConfigurationTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.directory.SystemRegistryTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.naming.ObdaInitialContextFactoryTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec [junit] Running org.biojava.naming.ObdaUriParserTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.ontology.OntologyTest [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.ontology.ParseOBOFileTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.114 sec [junit] Running org.biojava.ontology.TermImplTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.ontology.TripleImplTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.utils.ListToolsTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.utils.RepeatedCharSequenceTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.utils.SmallMapTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.utils.automata.NfaTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.utils.lsid.LifeScienceIdentifierTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.utils.process.ExternalProcessTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 sec [junit] Running org.biojava.utils.regex.PatternCheckerTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.utils.regex.RegexTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.utils.walker.WalkerFactoryTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec [junit] Running org.biojava.utils.walker.WalkerTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec [junit] Running org.biojavax.CrossReferenceResolutionExceptionTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.DummyCrossReferenceResolverTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.EmptyRichAnnotationTest [junit] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.SimpleCommentTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.SimpleCrossRefTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 sec [junit] Running org.biojavax.SimpleDocRefAuthorTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojavax.SimpleDocRefTest [junit] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojavax.SimpleNamespaceTest [junit] Tests run: 13, Failures: 2, Errors: 1, Skipped: 0, Time elapsed: 0.007 sec [junit] Test org.biojavax.SimpleNamespaceTest FAILED [junit] Running org.biojavax.SimpleNoteTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.SimpleRankedCrossRefTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.SimpleRankedDocRefTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojavax.SimpleRichAnnotationTest [junit] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.bio.SimpleBioEntryTest [junit] Tests run: 32, Failures: 2, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec [junit] Test org.biojavax.bio.SimpleBioEntryTest FAILED [junit] Running org.biojavax.bio.seq.CompoundRichLocationTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojavax.bio.seq.MultiSourceCompoundRichLocationTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojavax.bio.seq.SimpleRichFeatureTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec [junit] Running org.biojavax.bio.seq.SimpleRichLocationTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojavax.bio.seq.io.Bug2249_2248Test [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.037 sec [junit] Running org.biojavax.bio.seq.io.Bug2250_2256Test [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.083 sec [junit] Running org.biojavax.bio.seq.io.Bug2255Test [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec [junit] Running org.biojavax.bio.seq.io.EMBLFormatTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.bio.seq.io.GenbankFormatTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 sec [junit] Running org.biojavax.bio.seq.io.INSDseqFormatTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 sec [junit] Running org.biojavax.bio.seq.io.UniProtFormatTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec [junit] Running org.biojavax.bio.taxa.SimpleNCBITaxonNameTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ga.functions.ProportionalSelectionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec [junit] Running org.biojavax.ga.functions.SimpleCrossOverFunctionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.ga.functions.SimpleMutationFunctionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojavax.ga.impl.SimpleOrganismTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ga.impl.SimplePopulationTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ga.util.GAToolsTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ga.util.WeightedSetTest [junit] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ontology.SimpleComparableOntologyTest [junit] Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojavax.ontology.SimpleComparableTermTest [junit] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.ontology.SimpleComparableTripleTest [junit] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec BUILD SUCCESSFUL Total time: 27 seconds dh_testdir dh_testroot dh_installchangelogs dh_installdocs dh_installexamples -plibbiojava-java-demos demos/* #dh_installman dh_link -p libbiojava-java /usr/share/java/biojava1.7.1.jar /usr/share/java/biojava.jar # thinking about svn snapshots if [ "1.7" != "1.7.1" ]; then \ dh_link -p libbiojava1.7-java \ /usr/share/java/biojava1.7.1.jar \ /usr/share/java/biojava1.7.jar; \ fi dh_link # use .link files for version independant linking dh_compress dh_fixperms dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbiojava1.7-java: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums dh_builddeb INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libbiojava1.7-java (in debian/libbiojava1.7-java); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbiojava1.7-java/DEBIAN/control, package libbiojava1.7-java, directory debian/libbiojava1.7-java pkgstripfiles: Truncating usr/share/doc/libbiojava1.7-java/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package libbiojava1.7-java took 0 s dpkg-deb: warning: 'debian/libbiojava1.7-java/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbiojava1.7-java' in `../libbiojava1.7-java_1.7.1-5_all.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libbiojava-java (in debian/libbiojava-java); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbiojava-java/DEBIAN/control, package libbiojava-java, directory debian/libbiojava-java Searching for duplicated docs in dependency libbiojava1.7-java... symlinking changelog.Debian.gz in libbiojava-java to file in libbiojava1.7-java pkgstripfiles: PNG optimization for package libbiojava-java took 0 s dpkg-deb: warning: 'debian/libbiojava-java/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbiojava-java' in `../libbiojava-java_1.7.1-5_all.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libbiojava-java-demos (in debian/libbiojava-java-demos); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbiojava-java-demos/DEBIAN/control, package libbiojava-java-demos, directory debian/libbiojava-java-demos pkgstripfiles: Truncating usr/share/doc/libbiojava-java-demos/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package libbiojava-java-demos took 0 s dpkg-deb: warning: 'debian/libbiojava-java-demos/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbiojava-java-demos' in `../libbiojava-java-demos_1.7.1-5_all.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libbiojava-java-doc (in debian/libbiojava-java-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbiojava-java-doc/DEBIAN/control, package libbiojava-java-doc, directory debian/libbiojava-java-doc pkgstripfiles: Truncating usr/share/doc/libbiojava-java-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package libbiojava-java-doc (to save build time) dpkg-deb: warning: 'debian/libbiojava-java-doc/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbiojava-java-doc' in `../libbiojava-java-doc_1.7.1-5_all.deb'. dpkg-genchanges -b -mUbuntu/amd64 Build Daemon >../biojava-live_1.7.1-5_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build biojava-live-1.7.1 dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140520-2311 chroot-autobuild/build/buildd/libbiojava1.7-java_1.7.1-5_all.deb: new debian package, version 2.0. size 3160558 bytes: control archive= 1005 bytes. 1159 bytes, 22 lines control 311 bytes, 4 lines md5sums Package: libbiojava1.7-java Source: biojava-live Version: 1:1.7.1-5 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3498 Depends: libcommons-pool-java (>= 1.1), libcommons-collections3-java, libcommons-dbcp-java (>= 1.1), libhsqldb-java, libbytecode-java Suggests: java-virtual-machine, libjgrapht-java, libbiojava-java, libbiojava-java-doc Conflicts: libbiojava1.6-java Replaces: libbiojava1.6-java Section: java Priority: optional Homepage: http://www.biojava.org Description: Java API to biological data and applications (version 1.7) This package presents the Open Source Java API to biological databases and a series of mostly sequence-based algorithms. The APIs are not compatible between versions. In analogy to the dealing with shared libraries of the C language, the jar file of this package has the API version in its name. It is symbolically linked to the expected biojava.jar filename in the package libbiojava-java. This will help keeping multiple versions of the biojava API in parallel. chroot-autobuild/build/buildd/libbiojava-java_1.7.1-5_all.deb: new debian package, version 2.0. size 46390 bytes: control archive= 2346 bytes. 1319 bytes, 29 lines control 4115 bytes, 36 lines md5sums Package: libbiojava-java Source: biojava-live Version: 1:1.7.1-5 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 184 Depends: libbiojava1.7-java Conflicts: libbiojava1.6-java Replaces: libbiojava1.6-java Section: java Priority: optional Homepage: http://www.biojava.org Description: Java API to biological data and applications (default version) BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, and powerful analysis and statistical routines including a dynamic programming toolkit. . BioJava is provided by a vibrant community which meets annually at the Bioinformatics Open Source Conference (BOSC) that traditionally accompanies the Intelligent Systems in Molecular Biology (ISMB) meeting. Much like BioPerl, the employment of this library is valuable for everybody active in the field because of the many tricks of the trade one learns just by communicating on the mailing list. . This is a wrapper package which should enable smooth upgrades to new versions. chroot-autobuild/build/buildd/libbiojava-java-demos_1.7.1-5_all.deb: new debian package, version 2.0. size 2842320 bytes: control archive= 7075 bytes. 601 bytes, 15 lines control 20401 bytes, 194 lines md5sums Package: libbiojava-java-demos Source: biojava-live Version: 1:1.7.1-5 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3802 Recommends: libbiojava-java Section: java Priority: optional Homepage: http://www.biojava.org Description: Example programs for BioJava The package comes with a wealth of use cases for BioJava. It is generated together with the API documentation but because of its size of ~3.7MB it was decided to distribute it separately. chroot-autobuild/build/buildd/libbiojava-java-doc_1.7.1-5_all.deb: new debian package, version 2.0. size 2292076 bytes: control archive= 113787 bytes. 707 bytes, 18 lines control 449886 bytes, 3692 lines md5sums Package: libbiojava-java-doc Source: biojava-live Version: 1:1.7.1-5 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 58288 Recommends: konqueror | html-browser Suggests: libbiojava-java-demos, libbiojava-java Section: doc Priority: optional Homepage: http://www.biojava.org Description: [Biology] Documentation for BioJava BioJava is an open-source project dedicated to providing a Java framework for processing biological data. . 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libbiojava-java-demos - Example programs for BioJava libbiojava-java-doc - [Biology] Documentation for BioJava libbiojava1.7-java - Java API to biological data and applications (version 1.7) Closes: 748473 Changes: biojava-live (1:1.7.1-5) unstable; urgency=medium . * d/control: use libcommons-collections3 instead of libcommons-collection in runtime deps (Closes: #748473). Checksums-Sha1: a69dcba639dd2aab0dcf5fd0d6e10c477b04bc40 3160558 libbiojava1.7-java_1.7.1-5_all.deb 63e789f0bf3505ef1fa029a3e7103d44302e060d 46390 libbiojava-java_1.7.1-5_all.deb 18c5201767996c9773d21087338414c44938bffc 2842320 libbiojava-java-demos_1.7.1-5_all.deb 9c6ff095bee62f3f2d842879c717870a170086d3 2292076 libbiojava-java-doc_1.7.1-5_all.deb Checksums-Sha256: 982577febece9040c0be1e5acb031c03f224303a1867c76f794c092a85b41ede 3160558 libbiojava1.7-java_1.7.1-5_all.deb 3a878ee6e02f6a9e59823cc6b3e7c83035e1d1ab9f2ca3052d68716825fb5575 46390 libbiojava-java_1.7.1-5_all.deb 911865b356b4c64568bef6db5cae310f63d4d2632c107c44cb604ebf1525c853 2842320 libbiojava-java-demos_1.7.1-5_all.deb 8ab8be5366f3225c6edd48fc50f72dee5d26c82fe79c351a4c347779a18bac79 2292076 libbiojava-java-doc_1.7.1-5_all.deb Files: aee3999c349adf09a9effb1960a13ae6 3160558 java optional libbiojava1.7-java_1.7.1-5_all.deb 861834617a0698f5eb3461de821abf6c 46390 java optional libbiojava-java_1.7.1-5_all.deb d27cfc683c1d76f67edef558a912c370 2842320 java optional libbiojava-java-demos_1.7.1-5_all.deb 099ee9a52f5d9b8835ce3206fa2010ab 2292076 doc optional libbiojava-java-doc_1.7.1-5_all.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140520-2311 Build needed 00:01:41, 225112k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6027400'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6027400/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6027400'] Unmounting chroot for build PACKAGEBUILD-6027400... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6027400'] Removing build PACKAGEBUILD-6027400