https://launchpad.net/ubuntu/+source/bitseq/0.7.5+dfsg-5build1/+build/19100414 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-086 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 9 Apr 21:05:01 ntpdate[252130]: adjust time server 10.211.37.1 offset -0.000336 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100414 --image-type chroot /home/buildd/filecache-default/88ad86cb2b525f1abddded96eadf8014548f7845 Creating target for build PACKAGEBUILD-19100414 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100414 Starting target for build PACKAGEBUILD-19100414 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100414 'deb http://ftpmaster.internal/ubuntu focal main universe' Overriding sources.list in build-PACKAGEBUILD-19100414 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100414 Updating target for build PACKAGEBUILD-19100414 Ign:1 http://archive-team.internal/bootstrap/riscv64 focal InRelease Get:2 http://ftpmaster.internal/ubuntu focal InRelease [265 kB] Get:3 http://archive-team.internal/bootstrap/riscv64 focal Release [754 B] Ign:4 http://archive-team.internal/bootstrap/riscv64 focal Release.gpg Get:5 http://ftpmaster.internal/ubuntu focal-proposed InRelease [265 kB] Get:6 http://archive-team.internal/bootstrap/riscv64 focal/main riscv64 Packages [39.3 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 Packages [848 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main Translation-en [502 kB] Get:9 http://ftpmaster.internal/ubuntu focal/universe riscv64 Packages [7389 kB] Get:10 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5129 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 Packages [32.8 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [32.6 kB] Get:13 http://ftpmaster.internal/ubuntu focal-proposed/restricted Translation-en [1496 B] Get:14 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 Packages [109 kB] Get:15 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [99.8 kB] Get:16 http://ftpmaster.internal/ubuntu focal-proposed/multiverse riscv64 Packages [1140 B] Get:17 http://ftpmaster.internal/ubuntu focal-proposed/multiverse Translation-en [4424 B] Fetched 14.7 MB in 29s (516 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-common binutils-riscv64-linux-gnu bsdutils coreutils cpp-9 g++-9 gcc-8-base gcc-9 gcc-9-base libapt-pkg6.0 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libctf-nobfd0 libctf0 libgcc-9-dev libgnutls30 liblocale-gettext-perl libmount1 libperl5.30 libsmartcols1 libstdc++-9-dev libsystemd0 libtext-charwidth-perl libtext-iconv-perl libudev1 libuuid1 linux-libc-dev login mount passwd perl-base util-linux 38 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 44.2 MB of archives. After this operation, 312 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu focal/main riscv64 bsdutils riscv64 1:2.34-0.1ubuntu9 [57.0 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 coreutils riscv64 8.30-3ubuntu2 [1158 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 login riscv64 1:4.8.1-1ubuntu4 [216 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 perl-base riscv64 5.30.0-9build1 [1419 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 util-linux riscv64 2.34-0.1ubuntu9 [947 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 libc6-dev riscv64 2.31-0ubuntu7 [3659 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 libc-dev-bin riscv64 2.31-0ubuntu7 [62.5 kB] Get:8 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 linux-libc-dev riscv64 5.4.0-23.27 [1089 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 libc6 riscv64 2.31-0ubuntu7 [2272 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 libc-bin riscv64 2.31-0ubuntu7 [505 kB] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 libsystemd0 riscv64 245.4-2ubuntu1 [242 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 libudev1 riscv64 245.4-2ubuntu1 [69.9 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 libapt-pkg6.0 riscv64 2.0.1ubuntu1 [797 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 libgnutls30 riscv64 3.6.13-2ubuntu1 [720 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 apt riscv64 2.0.1ubuntu1 [1231 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 mount riscv64 2.34-0.1ubuntu9 [107 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 liblocale-gettext-perl riscv64 1.07-4 [16.5 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 libblkid1 riscv64 2.34-0.1ubuntu9 [129 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 libmount1 riscv64 2.34-0.1ubuntu9 [135 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 libsmartcols1 riscv64 2.34-0.1ubuntu9 [90.4 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 libuuid1 riscv64 2.34-0.1ubuntu9 [22.2 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 passwd riscv64 1:4.8.1-1ubuntu4 [752 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-charwidth-perl riscv64 0.04-10 [9460 B] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 libtext-iconv-perl riscv64 1.7-7 [13.2 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libctf0 riscv64 2.34-6ubuntu1 [39.9 kB] Get:26 http://ftpmaster.internal/ubuntu focal-proposed/universe riscv64 binutils-riscv64-linux-gnu riscv64 2.34-6ubuntu1 [646 kB] Get:27 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 binutils-common riscv64 2.34-6ubuntu1 [199 kB] Get:28 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 binutils riscv64 2.34-6ubuntu1 [3292 B] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libbinutils riscv64 2.34-6ubuntu1 [279 kB] Get:30 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libctf-nobfd0 riscv64 2.34-6ubuntu1 [40.6 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main riscv64 g++-9 riscv64 9.3.0-10ubuntu1 [6926 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main riscv64 gcc-9 riscv64 9.3.0-10ubuntu1 [6788 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main riscv64 libstdc++-9-dev riscv64 9.3.0-10ubuntu1 [3649 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main riscv64 libgcc-9-dev riscv64 9.3.0-10ubuntu1 [404 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main riscv64 cpp-9 riscv64 9.3.0-10ubuntu1 [6046 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main riscv64 gcc-9-base riscv64 9.3.0-10ubuntu1 [19.2 kB] Get:37 http://ftpmaster.internal/ubuntu focal/universe riscv64 gcc-8-base riscv64 8.4.0-3ubuntu2 [18.4 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main riscv64 libperl5.30 riscv64 5.30.0-9build1 [3422 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.2 MB in 8s (5373 kB/s) (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.34-0.1ubuntu9_riscv64.deb ... Unpacking bsdutils (1:2.34-0.1ubuntu9) over (1:2.34-0.1ubuntu8) ... Setting up bsdutils (1:2.34-0.1ubuntu9) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-3ubuntu2_riscv64.deb ... Unpacking coreutils (8.30-3ubuntu2) over (8.30-3ubuntu2) ... Setting up coreutils (8.30-3ubuntu2) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../login_1%3a4.8.1-1ubuntu4_riscv64.deb ... Unpacking login (1:4.8.1-1ubuntu4) over (1:4.8.1-1ubuntu3) ... Setting up login (1:4.8.1-1ubuntu4) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../perl-base_5.30.0-9build1_riscv64.deb ... Unpacking perl-base (5.30.0-9build1) over (5.30.0-9build1) ... Setting up perl-base (5.30.0-9build1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../util-linux_2.34-0.1ubuntu9_riscv64.deb ... Unpacking util-linux (2.34-0.1ubuntu9) over (2.34-0.1ubuntu8) ... Setting up util-linux (2.34-0.1ubuntu9) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../libc-dev-bin_2.31-0ubuntu7_riscv64.deb ... Unpacking libc-dev-bin (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Preparing to unpack .../linux-libc-dev_5.4.0-23.27_riscv64.deb ... Unpacking linux-libc-dev:riscv64 (5.4.0-23.27) over (5.4.0-21.25) ... Preparing to unpack .../libc6_2.31-0ubuntu7_riscv64.deb ... Unpacking libc6:riscv64 (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Setting up libc6:riscv64 (2.31-0ubuntu7) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libc-bin_2.31-0ubuntu7_riscv64.deb ... Unpacking libc-bin (2.31-0ubuntu7) over (2.31-0ubuntu6~riscv64.1) ... Setting up libc-bin (2.31-0ubuntu7) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libsystemd0_245.4-2ubuntu1_riscv64.deb ... Unpacking libsystemd0:riscv64 (245.4-2ubuntu1) over (244.3-1ubuntu1) ... Setting up libsystemd0:riscv64 (245.4-2ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libudev1_245.4-2ubuntu1_riscv64.deb ... Unpacking libudev1:riscv64 (245.4-2ubuntu1) over (244.3-1ubuntu1) ... Setting up libudev1:riscv64 (245.4-2ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.0.1ubuntu1_riscv64.deb ... Unpacking libapt-pkg6.0:riscv64 (2.0.1ubuntu1) over (2.0.1) ... Setting up libapt-pkg6.0:riscv64 (2.0.1ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.13-2ubuntu1_riscv64.deb ... Unpacking libgnutls30:riscv64 (3.6.13-2ubuntu1) over (3.6.11.1-2ubuntu2) ... Setting up libgnutls30:riscv64 (3.6.13-2ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../apt_2.0.1ubuntu1_riscv64.deb ... Unpacking apt (2.0.1ubuntu1) over (2.0.1) ... Setting up apt (2.0.1ubuntu1) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../mount_2.34-0.1ubuntu9_riscv64.deb ... Unpacking mount (2.34-0.1ubuntu9) over (2.34-0.1ubuntu8) ... Preparing to unpack .../liblocale-gettext-perl_1.07-4_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-4) over (1.07-4) ... Preparing to unpack .../libblkid1_2.34-0.1ubuntu9_riscv64.deb ... Unpacking libblkid1:riscv64 (2.34-0.1ubuntu9) over (2.34-0.1ubuntu8) ... Setting up libblkid1:riscv64 (2.34-0.1ubuntu9) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libmount1_2.34-0.1ubuntu9_riscv64.deb ... Unpacking libmount1:riscv64 (2.34-0.1ubuntu9) over (2.34-0.1ubuntu8) ... Setting up libmount1:riscv64 (2.34-0.1ubuntu9) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.34-0.1ubuntu9_riscv64.deb ... Unpacking libsmartcols1:riscv64 (2.34-0.1ubuntu9) over (2.34-0.1ubuntu8) ... Setting up libsmartcols1:riscv64 (2.34-0.1ubuntu9) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../libuuid1_2.34-0.1ubuntu9_riscv64.deb ... Unpacking libuuid1:riscv64 (2.34-0.1ubuntu9) over (2.34-0.1ubuntu8) ... Setting up libuuid1:riscv64 (2.34-0.1ubuntu9) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.8.1-1ubuntu4_riscv64.deb ... Unpacking passwd (1:4.8.1-1ubuntu4) over (1:4.8.1-1ubuntu3) ... Setting up passwd (1:4.8.1-1ubuntu4) ... (Reading database ... 9818 files and directories currently installed.) Preparing to unpack .../00-libtext-charwidth-perl_0.04-10_riscv64.deb ... Unpacking libtext-charwidth-perl (0.04-10) over (0.04-10) ... Preparing to unpack .../01-libtext-iconv-perl_1.7-7_riscv64.deb ... Unpacking libtext-iconv-perl (1.7-7) over (1.7-7) ... Preparing to unpack .../02-libctf0_2.34-6ubuntu1_riscv64.deb ... Unpacking libctf0:riscv64 (2.34-6ubuntu1) over (2.34-5ubuntu1) ... Preparing to unpack .../03-binutils-riscv64-linux-gnu_2.34-6ubuntu1_riscv64.deb ... Unpacking binutils-riscv64-linux-gnu (2.34-6ubuntu1) over (2.34-5ubuntu1) ... Preparing to unpack .../04-binutils-common_2.34-6ubuntu1_riscv64.deb ... Unpacking binutils-common:riscv64 (2.34-6ubuntu1) over (2.34-5ubuntu1) ... Preparing to unpack .../05-binutils_2.34-6ubuntu1_riscv64.deb ... Unpacking binutils (2.34-6ubuntu1) over (2.34-5ubuntu1) ... Preparing to unpack .../06-libbinutils_2.34-6ubuntu1_riscv64.deb ... Unpacking libbinutils:riscv64 (2.34-6ubuntu1) over (2.34-5ubuntu1) ... Preparing to unpack .../07-libctf-nobfd0_2.34-6ubuntu1_riscv64.deb ... Unpacking libctf-nobfd0:riscv64 (2.34-6ubuntu1) over (2.34-5ubuntu1) ... Preparing to unpack .../08-g++-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking g++-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../09-gcc-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking gcc-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../10-libstdc++-9-dev_9.3.0-10ubuntu1_riscv64.deb ... Unpacking libstdc++-9-dev:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../11-libgcc-9-dev_9.3.0-10ubuntu1_riscv64.deb ... Unpacking libgcc-9-dev:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../12-cpp-9_9.3.0-10ubuntu1_riscv64.deb ... Unpacking cpp-9 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../13-gcc-9-base_9.3.0-10ubuntu1_riscv64.deb ... Unpacking gcc-9-base:riscv64 (9.3.0-10ubuntu1) over (9.3.0-8ubuntu1) ... Preparing to unpack .../14-gcc-8-base_8.4.0-3ubuntu2_riscv64.deb ... Unpacking gcc-8-base:riscv64 (8.4.0-3ubuntu2) over (8.4.0-3ubuntu1) ... Preparing to unpack .../15-libperl5.30_5.30.0-9build1_riscv64.deb ... Unpacking libperl5.30:riscv64 (5.30.0-9build1) over (5.30.0-9build1) ... Setting up libtext-iconv-perl (1.7-7) ... Setting up libtext-charwidth-perl (0.04-10) ... Setting up binutils-common:riscv64 (2.34-6ubuntu1) ... Setting up linux-libc-dev:riscv64 (5.4.0-23.27) ... Setting up libctf-nobfd0:riscv64 (2.34-6ubuntu1) ... Setting up gcc-8-base:riscv64 (8.4.0-3ubuntu2) ... Setting up mount (2.34-0.1ubuntu9) ... Setting up libperl5.30:riscv64 (5.30.0-9build1) ... Setting up libbinutils:riscv64 (2.34-6ubuntu1) ... Setting up libc-dev-bin (2.31-0ubuntu7) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:riscv64 (9.3.0-10ubuntu1) ... Setting up libctf0:riscv64 (2.34-6ubuntu1) ... Setting up binutils-riscv64-linux-gnu (2.34-6ubuntu1) ... Setting up binutils (2.34-6ubuntu1) ... Setting up libgcc-9-dev:riscv64 (9.3.0-10ubuntu1) ... Setting up cpp-9 (9.3.0-10ubuntu1) ... Setting up libc6-dev:riscv64 (2.31-0ubuntu7) ... Setting up gcc-9 (9.3.0-10ubuntu1) ... Setting up libstdc++-9-dev:riscv64 (9.3.0-10ubuntu1) ... Setting up g++-9 (9.3.0-10ubuntu1) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19100414 riscv64 focal -c chroot:build-PACKAGEBUILD-19100414 --arch=riscv64 --dist=focal --nolog bitseq_0.7.5+dfsg-5build1.dsc Initiating build PACKAGEBUILD-19100414 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-086 +==============================================================================+ | bitseq 0.7.5+dfsg-5build1 (riscv64) Thu, 09 Apr 2020 21:09:08 +0000 | +==============================================================================+ Package: bitseq Version: 0.7.5+dfsg-5build1 Source Version: 0.7.5+dfsg-5build1 Distribution: focal Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19100414/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/bitseq-5g3MJ9/resolver-tqEc3Q' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bitseq_0.7.5+dfsg-5build1.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/bitseq-5g3MJ9/bitseq-0.7.5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/bitseq-5g3MJ9' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), zlib1g-dev, libbam-dev, libboost-dev, help2man, python3, python3-numpy, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), zlib1g-dev, libbam-dev, libboost-dev, help2man, python3, python3-numpy, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [407 B] Get:5 copy:/<>/apt_archive ./ Packages [488 B] Fetched 1852 B in 0s (5108 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbam-dev libblas3 libboost-dev libboost1.71-dev libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu66 liblapack3 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3-numpy python3-pkg-resources python3.8 python3.8-minimal tzdata zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.71-doc libboost-atomic1.71-dev libboost-chrono1.71-dev libboost-container1.71-dev libboost-context1.71-dev libboost-contract1.71-dev libboost-coroutine1.71-dev libboost-date-time1.71-dev libboost-exception1.71-dev libboost-fiber1.71-dev libboost-filesystem1.71-dev libboost-graph1.71-dev libboost-graph-parallel1.71-dev libboost-iostreams1.71-dev libboost-locale1.71-dev libboost-log1.71-dev libboost-math1.71-dev libboost-mpi1.71-dev libboost-mpi-python1.71-dev libboost-numpy1.71-dev libboost-program-options1.71-dev libboost-python1.71-dev libboost-random1.71-dev libboost-regex1.71-dev libboost-serialization1.71-dev libboost-stacktrace1.71-dev libboost-system1.71-dev libboost-test1.71-dev libboost-thread1.71-dev libboost-timer1.71-dev libboost-type-erasure1.71-dev libboost-wave1.71-dev libboost1.71-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv gfortran python-numpy-doc python3-dev python3-pytest python3-numpy-dbg python3-setuptools python3.8-venv python3.8-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libbam-dev libblas3 libboost-dev libboost1.71-dev libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libicu66 liblapack3 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mime-support po-debconf python3 python3-minimal python3-numpy python3-pkg-resources python3.8 python3.8-minimal sbuild-build-depends-main-dummy tzdata zlib1g-dev 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 35.8 MB of archives. After this operation, 246 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-minimal riscv64 3.8.2-1ubuntu1 [698 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main riscv64 libexpat1 riscv64 2.2.9-1build1 [68.8 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8-minimal riscv64 3.8.2-1ubuntu1 [1447 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-minimal riscv64 3.8.2-0ubuntu2 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main riscv64 mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main riscv64 libmpdec2 riscv64 2.4.2-3 [79.2 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3.8-stdlib riscv64 3.8.2-1ubuntu1 [1557 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main riscv64 python3.8 riscv64 3.8.2-1ubuntu1 [364 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main riscv64 libpython3-stdlib riscv64 3.8.2-0ubuntu2 [7072 B] Get:11 http://ftpmaster.internal/ubuntu focal/main riscv64 python3 riscv64 3.8.2-0ubuntu2 [47.6 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main riscv64 groff-base riscv64 1.22.4-4build1 [816 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main riscv64 libglib2.0-0 riscv64 2.64.1-1 [1122 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main riscv64 tzdata all 2019c-3ubuntu1 [294 kB] Get:24 http://ftpmaster.internal/ubuntu focal/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:25 http://ftpmaster.internal/ubuntu focal/main riscv64 libxml2 riscv64 2.9.10+dfsg-4build1 [558 kB] Get:26 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-pkg-resources all 45.2.0-1 [130 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:29 http://ftpmaster.internal/ubuntu focal/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:33 http://ftpmaster.internal/ubuntu focal/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:34 http://ftpmaster.internal/ubuntu focal/main riscv64 libtool all 2.4.6-14 [161 kB] Get:35 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:36 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 libdebhelper-perl all 12.10ubuntu1 [62.1 kB] Get:37 http://ftpmaster.internal/ubuntu focal/main riscv64 libarchive-zip-perl all 1.67-2 [90.5 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:39 http://ftpmaster.internal/ubuntu focal/main riscv64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main riscv64 dh-strip-nondeterminism all 1.6.3-2 [5228 B] Get:41 http://ftpmaster.internal/ubuntu focal/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main riscv64 po-debconf all 1.0.21 [233 kB] Get:46 http://ftpmaster.internal/ubuntu focal-proposed/main riscv64 debhelper all 12.10ubuntu1 [877 kB] Get:47 http://ftpmaster.internal/ubuntu focal/universe riscv64 help2man riscv64 1.47.13 [173 kB] Get:48 http://ftpmaster.internal/ubuntu focal/universe riscv64 libbam-dev riscv64 0.1.19-4 [230 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main riscv64 libblas3 riscv64 3.9.0-1build1 [106 kB] Get:50 http://ftpmaster.internal/ubuntu focal/main riscv64 libboost1.71-dev riscv64 1.71.0-6ubuntu6 [9068 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main riscv64 libboost-dev riscv64 1.71.0.0ubuntu1 [3600 B] Get:52 http://ftpmaster.internal/ubuntu focal/main riscv64 libgfortran5 riscv64 10-20200324-1ubuntu1 [329 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main riscv64 liblapack3 riscv64 3.9.0-1build1 [1669 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main riscv64 python3-numpy riscv64 1:1.17.4-5ubuntu3 [2509 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main riscv64 zlib1g-dev riscv64 1:1.2.11.dfsg-2ubuntu1 [207 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.8 MB in 8s (4769 kB/s) Selecting previously unselected package libpython3.8-minimal:riscv64. (Reading database ... 9816 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.2-1ubuntu1_riscv64.deb ... Unpacking libpython3.8-minimal:riscv64 (3.8.2-1ubuntu1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.2.9-1build1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.2-1ubuntu1_riscv64.deb ... Unpacking python3.8-minimal (3.8.2-1ubuntu1) ... Setting up libpython3.8-minimal:riscv64 (3.8.2-1ubuntu1) ... Setting up libexpat1:riscv64 (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.2-1ubuntu1) ... Selecting previously unselected package python3-minimal. (Reading database ... 10107 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.2-0ubuntu2_riscv64.deb ... Unpacking python3-minimal (3.8.2-0ubuntu2) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.64ubuntu1_all.deb ... Unpacking mime-support (3.64ubuntu1) ... Selecting previously unselected package libmpdec2:riscv64. Preparing to unpack .../2-libmpdec2_2.4.2-3_riscv64.deb ... Unpacking libmpdec2:riscv64 (2.4.2-3) ... Selecting previously unselected package libpython3.8-stdlib:riscv64. Preparing to unpack .../3-libpython3.8-stdlib_3.8.2-1ubuntu1_riscv64.deb ... Unpacking libpython3.8-stdlib:riscv64 (3.8.2-1ubuntu1) ... Selecting previously unselected package python3.8. Preparing to unpack .../4-python3.8_3.8.2-1ubuntu1_riscv64.deb ... Unpacking python3.8 (3.8.2-1ubuntu1) ... Selecting previously unselected package libpython3-stdlib:riscv64. Preparing to unpack .../5-libpython3-stdlib_3.8.2-0ubuntu2_riscv64.deb ... Unpacking libpython3-stdlib:riscv64 (3.8.2-0ubuntu2) ... Setting up python3-minimal (3.8.2-0ubuntu2) ... Selecting previously unselected package python3. (Reading database ... 10509 files and directories currently installed.) Preparing to unpack .../00-python3_3.8.2-0ubuntu2_riscv64.deb ... Unpacking python3 (3.8.2-0ubuntu2) ... Selecting previously unselected package libbsd0:riscv64. Preparing to unpack .../01-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../03-libuchardet0_0.0.6-3build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../04-groff-base_1.22.4-4build1_riscv64.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../05-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../06-man-db_2.9.1-1_riscv64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.38-4_riscv64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../08-libmagic1_1%3a5.38-4_riscv64.deb ... Unpacking libmagic1:riscv64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.38-4_riscv64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package libelf1:riscv64. Preparing to unpack .../10-libelf1_0.176-1.1build1_riscv64.deb ... Unpacking libelf1:riscv64 (0.176-1.1build1) ... Selecting previously unselected package libglib2.0-0:riscv64. Preparing to unpack .../11-libglib2.0-0_2.64.1-1_riscv64.deb ... Unpacking libglib2.0-0:riscv64 (2.64.1-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../12-tzdata_2019c-3ubuntu1_all.deb ... Unpacking tzdata (2019c-3ubuntu1) ... Selecting previously unselected package libicu66:riscv64. Preparing to unpack .../13-libicu66_66.1-2ubuntu2_riscv64.deb ... Unpacking libicu66:riscv64 (66.1-2ubuntu2) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../14-libxml2_2.9.10+dfsg-4build1_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.10+dfsg-4build1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../15-python3-pkg-resources_45.2.0-1_all.deb ... Unpacking python3-pkg-resources (45.2.0-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../16-gettext-base_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext-base (0.19.8.1-10build1) ... Selecting previously unselected package libsigsegv2:riscv64. Preparing to unpack .../17-libsigsegv2_2.12-2_riscv64.deb ... Unpacking libsigsegv2:riscv64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../18-m4_1.4.18-4_riscv64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../19-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../20-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../21-automake_1%3a1.16.1-4ubuntu6_all.deb ... Unpacking automake (1:1.16.1-4ubuntu6) ... Selecting previously unselected package autopoint. Preparing to unpack .../22-autopoint_0.19.8.1-10build1_all.deb ... Unpacking autopoint (0.19.8.1-10build1) ... Selecting previously unselected package libtool. Preparing to unpack .../23-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../24-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../25-libdebhelper-perl_12.10ubuntu1_all.deb ... Unpacking libdebhelper-perl (12.10ubuntu1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../26-libarchive-zip-perl_1.67-2_all.deb ... Unpacking libarchive-zip-perl (1.67-2) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../27-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../28-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../29-dh-strip-nondeterminism_1.6.3-2_all.deb ... Unpacking dh-strip-nondeterminism (1.6.3-2) ... Selecting previously unselected package dwz. Preparing to unpack .../30-dwz_0.13-5_riscv64.deb ... Unpacking dwz (0.13-5) ... Selecting previously unselected package libcroco3:riscv64. Preparing to unpack .../31-libcroco3_0.6.13-1_riscv64.deb ... Unpacking libcroco3:riscv64 (0.6.13-1) ... Selecting previously unselected package gettext. Preparing to unpack .../32-gettext_0.19.8.1-10build1_riscv64.deb ... Unpacking gettext (0.19.8.1-10build1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../33-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../34-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../35-debhelper_12.10ubuntu1_all.deb ... Unpacking debhelper (12.10ubuntu1) ... Selecting previously unselected package help2man. Preparing to unpack .../36-help2man_1.47.13_riscv64.deb ... Unpacking help2man (1.47.13) ... Selecting previously unselected package libbam-dev. Preparing to unpack .../37-libbam-dev_0.1.19-4_riscv64.deb ... Unpacking libbam-dev (0.1.19-4) ... Selecting previously unselected package libblas3:riscv64. Preparing to unpack .../38-libblas3_3.9.0-1build1_riscv64.deb ... Unpacking libblas3:riscv64 (3.9.0-1build1) ... Selecting previously unselected package libboost1.71-dev:riscv64. Preparing to unpack .../39-libboost1.71-dev_1.71.0-6ubuntu6_riscv64.deb ... Unpacking libboost1.71-dev:riscv64 (1.71.0-6ubuntu6) ... Selecting previously unselected package libboost-dev:riscv64. Preparing to unpack .../40-libboost-dev_1.71.0.0ubuntu1_riscv64.deb ... Unpacking libboost-dev:riscv64 (1.71.0.0ubuntu1) ... Selecting previously unselected package libgfortran5:riscv64. Preparing to unpack .../41-libgfortran5_10-20200324-1ubuntu1_riscv64.deb ... Unpacking libgfortran5:riscv64 (10-20200324-1ubuntu1) ... Selecting previously unselected package liblapack3:riscv64. Preparing to unpack .../42-liblapack3_3.9.0-1build1_riscv64.deb ... Unpacking liblapack3:riscv64 (3.9.0-1build1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../43-python3-numpy_1%3a1.17.4-5ubuntu3_riscv64.deb ... Unpacking python3-numpy (1:1.17.4-5ubuntu3) ... Selecting previously unselected package zlib1g-dev:riscv64. Preparing to unpack .../44-zlib1g-dev_1%3a1.2.11.dfsg-2ubuntu1_riscv64.deb ... Unpacking zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../45-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:riscv64 (1.5.2-2build1) ... Setting up mime-support (3.64ubuntu1) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-2) ... Setting up libglib2.0-0:riscv64 (2.64.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (12.10ubuntu1) ... Setting up libboost1.71-dev:riscv64 (1.71.0-6ubuntu6) ... Setting up libmagic1:riscv64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-4) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Apr 9 21:12:51 UTC 2020. Universal Time is now: Thu Apr 9 21:12:51 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up help2man (1.47.13) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:riscv64 (3.9.0-1build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libbam-dev (0.1.19-4) ... Setting up libgfortran5:riscv64 (10-20200324-1ubuntu1) ... Setting up zlib1g-dev:riscv64 (1:1.2.11.dfsg-2ubuntu1) ... Setting up libuchardet0:riscv64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libboost-dev:riscv64 (1.71.0.0ubuntu1) ... Setting up libmpdec2:riscv64 (2.4.2-3) ... Setting up libpython3.8-stdlib:riscv64 (3.8.2-1ubuntu1) ... Setting up python3.8 (3.8.2-1ubuntu1) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up libpython3-stdlib:riscv64 (3.8.2-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up liblapack3:riscv64 (3.9.0-1build1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libtool (2.4.6-14) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.2-0ubuntu2) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-4build1) ... Setting up python3-pkg-resources (45.2.0-1) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up python3-numpy (1:1.17.4-5ubuntu3) ... Setting up gettext (0.19.8.1-10build1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.10ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 (riscv64) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-10ubuntu1 gcc-9_9.3.0-10ubuntu1 libc6-dev_2.31-0ubuntu7 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200324-1ubuntu1 linux-libc-dev_5.4.0-23.27 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1build1 apt_2.0.1ubuntu1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu4 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 binutils-riscv64-linux-gnu_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-10ubuntu1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.10ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-10ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200324-1ubuntu1 gcc-8-base_8.4.0-3ubuntu2 gcc-9_9.3.0-10ubuntu1 gcc-9-base_9.3.0-10ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 help2man_1.47.13 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg6.0_2.0.1ubuntu1 libarchive-zip-perl_1.67-2 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200324-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbam-dev_0.1.19-4 libbinutils_2.34-6ubuntu1 libblas3_3.9.0-1build1 libblkid1_2.34-0.1ubuntu9 libboost-dev_1.71.0.0ubuntu1 libboost1.71-dev_1.71.0-6ubuntu6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu7 libc-dev-bin_2.31-0ubuntu7 libc6_2.31-0ubuntu7 libc6-dev_2.31-0ubuntu7 libcap-ng0_0.7.9-2.1build1 libcc1-0_10-20200324-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.10ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-10ubuntu1 libgcc-s1_10-20200324-1ubuntu1 libgcc1_1:10-20200324-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200324-1ubuntu1 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200324-1ubuntu1 libgpg-error0_1.37-1 libgpm2_1.20.7-5 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.2.0-2 libisl22_0.22.1-1 liblapack3_3.9.0-1build1 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncursesw6_6.2-0ubuntu2 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libpython3-stdlib_3.8.2-0ubuntu2 libpython3.8-minimal_3.8.2-1ubuntu1 libpython3.8-stdlib_3.8.2-1ubuntu1 libreadline8_8.0-4 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-4 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1d-2ubuntu6 libstdc++-9-dev_9.3.0-10ubuntu1 libstdc++6_10-20200324-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.4-2ubuntu1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo6_6.2-0ubuntu2 libtool_2.4.6-14 libuchardet0_0.0.6-3build1 libudev1_245.4-2ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libxml2_2.9.10+dfsg-4build1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-23.27 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu4 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu9 ncurses-base_6.2-0ubuntu2 ncurses-bin_6.2-0ubuntu2 openssl_1.1.1d-2ubuntu6 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu4 patch_2.7.6-6 perl_5.30.0-9build1 perl-base_5.30.0-9build1 perl-modules-5.30_5.30.0-9build1 pinentry-curses_1.1.0-3build1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 python3_3.8.2-0ubuntu2 python3-minimal_3.8.2-0ubuntu2 python3-numpy_1:1.17.4-5ubuntu3 python3-pkg-resources_45.2.0-1 python3.8_3.8.2-1ubuntu1 python3.8-minimal_3.8.2-1ubuntu1 readline-common_8.0-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-7 tzdata_2019c-3ubuntu1 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu9 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bitseq Binary: bitseq Architecture: any Version: 0.7.5+dfsg-5build1 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://github.com/BitSeq/BitSeq Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/bitseq Vcs-Git: https://salsa.debian.org/med-team/bitseq.git Build-Depends: debhelper-compat (= 12), zlib1g-dev, libbam-dev, libboost-dev, help2man, python3, python3-numpy Package-List: bitseq deb science optional arch=any Checksums-Sha1: a93fba144039e99acc006846921cb02b61febb47 79132 bitseq_0.7.5+dfsg.orig.tar.xz 3fe5bb06d4604e7b09ac64772dbacd195984047c 7584 bitseq_0.7.5+dfsg-5build1.debian.tar.xz Checksums-Sha256: bd48fd14f9687aa4813d5e4f0a8b206616dc7fd9b1060969803f391c9534c04c 79132 bitseq_0.7.5+dfsg.orig.tar.xz e6a36a935f80c2be0e531b30703ffdad6be06127b80f52c364a2f18ce2d29a06 7584 bitseq_0.7.5+dfsg-5build1.debian.tar.xz Files: dbb476c736ab9e1384d55a41dd267336 79132 bitseq_0.7.5+dfsg.orig.tar.xz 9c7466d17ef35b3500ba73ba75b5a9a5 7584 bitseq_0.7.5+dfsg-5build1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE1WVxuIqLuvFAv2PWvX6qYHePpvUFAl53kUIQHGRva29AdWJ1 bnR1LmNvbQAKCRC9fqpgd4+m9VfwD/sHCzEmNYSeahzVyqrfYiKKbhf5tN54i67+ UtZyWZpfU6lzNZiEzyCyEkPYVwo89RHcxUZorCkHNZQy95Bjbwaoyw6U4jYe2dyL 5ucG+9awZAQVLex5gTyO/mqpT7syr3OSQmDuR2VWXreYgtIE7LtFz1+eCbj6PPpd MJ9ILzLVdd5jRKCHSszJPvhky2a34jV6uwZ/NnuqvJKq2lARKLSg3HRKxoDQeIr8 Q3zttI938G+z65EUEf2gxisO2XKACktJoHKl5L/93CpNz8/RthgC1DoM/0ey0SX/ TmixWHaUDLFj73tjHWpoJQTkr6ExqOe0LXZ6CHevgS0peYUmdbeu+u+LYeuEavdt FCLcYNmAvfyNCD93d7z/vUiai8m75+Z/KdaUH4lzVbPXpSyG4rlLJXYV/ct9m+CE jrsG8T03l9yhGXiKhIiSqYtijgWAT8af56qausya7WHgxx9eyTSdBHw76pCLtVK5 Bhi3cI5MbOFZEf4xaMf0NLM4Q5QYQDrXsPRCJvX0SiNNTXies2NTd+XoCheYe+NB U8kacmrXkJiS9HWJXHTE4qvAyPfK2TJOjnJjxq9XRw34CO8EWQAHZze81Liiutw8 kMqQbZ6kr5qqFe81+pOylSxtKZVgaH8x9tnPZCHzk7Tm0gYnWiLInQ7B/l/jUaUJ BMKgSvhhZA== =xDVw -----END PGP SIGNATURE----- gpgv: Signature made Sun Mar 22 16:24:34 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bitseq_0.7.5+dfsg-5build1.dsc dpkg-source: info: extracting bitseq in /<> dpkg-source: info: unpacking bitseq_0.7.5+dfsg.orig.tar.xz dpkg-source: info: unpacking bitseq_0.7.5+dfsg-5build1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying link_against_system_samtools.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_clean_target.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix_build_options.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19100414 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19100414 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19100414 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package bitseq dpkg-buildpackage: info: source version 0.7.5+dfsg-5build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 fakeroot debian/rules clean dh clean dh_auto_clean make -j4 clean make[1]: Entering directory '/<>' rm -f *.o convertSamples estimateDE estimateExpression estimateHyperPar estimateVBExpression extractSamples getFoldChange getGeneExpression getPPLR getVariance getWithinGeneExpression parseAlignment transposeLargeFile make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>' g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -ffunction-sections -fdata-sections -c ArgumentParser.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o common.o common.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -ffunction-sections -fdata-sections -c FileHeader.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -ffunction-sections -fdata-sections -c misc.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -ffunction-sections -fdata-sections -c MyTimer.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o TranscriptInfo.o TranscriptInfo.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -ffunction-sections -fdata-sections -c PosteriorSamples.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -c CollapsedSampler.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o GibbsParameters.o GibbsParameters.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -c GibbsSampler.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -c Sampler.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o TagAlignments.o TagAlignments.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o transposeFiles.o transposeFiles.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lowess.o lowess.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o TranscriptExpression.o TranscriptExpression.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -fopenmp -DSUPPORT_OPENMP -c SimpleSparse.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -fopenmp -DSUPPORT_OPENMP -c VariationalBayes.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections extractSamples.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o extractSamples g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getFoldChange.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o getFoldChange g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getGeneExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o TranscriptInfo.o -o getGeneExpression g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getPPLR.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o getPPLR g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getVariance.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o getVariance g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections getWithinGeneExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o TranscriptInfo.o -o getWithinGeneExpression g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -fopenmp -DSUPPORT_OPENMP -c ReadDistribution.cpp g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wdate-time -D_FORTIFY_SOURCE=2 -c -o TranscriptSequence.o TranscriptSequence.cpp ReadDistribution.cpp: In member function ‘bool ReadDistribution::observed(ns_rD::fragmentP)’: ReadDistribution.cpp:265:9: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses] 265 | (! frag->second->core.flag & BAM_FREVERSE))){ | ^~~~~~~~~~~~~~~~~~~~~~~~~ ReadDistribution.cpp: In member function ‘bool ReadDistribution::getP(ns_rD::fragmentP, double&, double&)’: ReadDistribution.cpp:687:14: warning: suggest parentheses around operand of ‘!’ or change ‘&’ to ‘&&’ or ‘!’ to ‘~’ [-Wparentheses] 687 | (! frag->second->core.flag & BAM_FREVERSE))){ | ^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections transposeLargeFile.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o transposeFiles.o -o transposeLargeFile g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections convertSamples.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o TranscriptInfo.o -o convertSamples g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections estimateDE.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o PosteriorSamples.o -o estimateDE g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -fopenmp -DSUPPORT_OPENMP -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections estimateExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o CollapsedSampler.o GibbsParameters.o GibbsSampler.o Sampler.o TagAlignments.o TranscriptInfo.o transposeFiles.o -o estimateExpression g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections estimateHyperPar.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o lowess.o PosteriorSamples.o TranscriptExpression.o -o estimateHyperPar g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DBS_VERSION=\"0.7.5\" -Wall -O2 -pipe -I . -fopenmp -DSUPPORT_OPENMP -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-gc-sections estimateVBExpression.cpp ArgumentParser.o common.o FileHeader.o misc.o MyTimer.o SimpleSparse.o TagAlignments.o TranscriptInfo.o transposeFiles.o VariationalBayes.o -o estimateVBExpression /usr/bin/ld: misc.o: in function `ns_genes::prepareInput(ArgumentParser const&, TranscriptInfo*, PosteriorSamples*, long*, long*, long*)': ./misc.cpp:129: undefined reference to `TranscriptInfo::readInfo(std::__cxx11::basic_string, std::allocator >)' /usr/bin/ld: ./misc.cpp:141: undefined reference to `TranscriptInfo::getG() const' /usr/bin/ld: ./misc.cpp:131: undefined reference to `TranscriptInfo::getM() const' /usr/bin/ld: misc.o: in function `.L0 ': /usr/include/riscv64-linux-gnu/bits/stdio2.h:100: undefined reference to `TranscriptInfo::getM() const' /usr/bin/ld: misc.o: in function `.LEHB70': /usr/include/riscv64-linux-gnu/bits/stdio2.h:100: undefined reference to `TranscriptInfo::updateGeneNames(std::map, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > > const&)' /usr/bin/ld: misc.o: in function `.L0 ': /usr/include/riscv64-linux-gnu/bits/stdio2.h:100: undefined reference to `TranscriptInfo::getG() const' /usr/bin/ld: misc.o: in function `std::char_traits::compare(char const*, char const*, unsigned long)': /usr/include/c++/9/bits/char_traits.h:325: undefined reference to `TranscriptInfo::updateGeneNames(std::vector, std::allocator >, std::allocator, std::allocator > > > const&)' collect2: error: ld returned 1 exit status make[1]: *** [Makefile:41: estimateDE] Error 1 make[1]: *** Waiting for unfinished jobs.... /usr/bin/ld: misc.o: in function `ns_genes::prepareInput(ArgumentParser const&, TranscriptInfo*, PosteriorSamples*, long*, long*, long*)': ./misc.cpp:129: undefined reference to `TranscriptInfo::readInfo(std::__cxx11::basic_string, std::allocator >)' /usr/bin/ld: ./misc.cpp:141: undefined reference to `TranscriptInfo::getG() const' /usr/bin/ld: ./misc.cpp:131: undefined reference to `TranscriptInfo::getM() const' /usr/bin/ld: misc.o: in function `.L0 ': /usr/include/riscv64-linux-gnu/bits/stdio2.h:100: undefined reference to `TranscriptInfo::getM() const' /usr/bin/ld: misc.o: in function `.LEHB70': /usr/include/riscv64-linux-gnu/bits/stdio2.h:100: undefined reference to `TranscriptInfo::updateGeneNames(std::map, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > const, std::__cxx11::basic_string, std::allocator > > > > const&)' /usr/bin/ld: misc.o: in function `.L0 ': /usr/include/riscv64-linux-gnu/bits/stdio2.h:100: undefined reference to `TranscriptInfo::getG() const' /usr/bin/ld: misc.o: in function `std::char_traits::compare(char const*, char const*, unsigned long)': /usr/include/c++/9/bits/char_traits.h:325: undefined reference to `TranscriptInfo::updateGeneNames(std::vector, std::allocator >, std::allocator, std::allocator > > > const&)' collect2: error: ld returned 1 exit status make[1]: *** [Makefile:47: estimateHyperPar] Error 1 make[1]: Leaving directory '/<>' dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" returned exit code 2 make: *** [debian/rules:16: build-arch] Error 25 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-04-09T21:20:09Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 50556 Build-Time: 372 Distribution: focal Fail-Stage: build Host Architecture: riscv64 Install-Time: 266 Job: bitseq_0.7.5+dfsg-5build1.dsc Machine Architecture: riscv64 Package: bitseq Package-Time: 661 Source-Version: 0.7.5+dfsg-5build1 Space: 50556 Status: attempted Version: 0.7.5+dfsg-5build1 -------------------------------------------------------------------------------- Finished at 2020-04-09T21:20:09Z Build needed 00:11:01, 50556k disk space E: Build failure (dpkg-buildpackage died) RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100414 Scanning for processes to kill in build PACKAGEBUILD-19100414 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100414 Stopping target for build PACKAGEBUILD-19100414 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=focal --arch=riscv64 PACKAGEBUILD-19100414 Removing build PACKAGEBUILD-19100414