https://launchpad.net/ubuntu/+source/blasr/5.3.5+dfsg-6build5/+build/28055381 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-riscv64-031 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 Buildd toolchain package versions: launchpad-buildd_236~650~ubuntu22.04.1 python3-lpbuildd_236~650~ubuntu22.04.1 sbuild_0.81.2ubuntu6 git-build-recipe_0.3.6 git_1:2.34.1-1ubuntu1.10 dpkg-dev_1.21.1ubuntu2.3 python3-debian_0.1.43ubuntu1.1. Syncing the system clock with the buildd NTP service... 14 Apr 17:06:00 ntpdate[2229]: adjust time server 10.211.37.1 offset -0.001124 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28055381 --image-type chroot /home/buildd/filecache-default/20a3246b7a16d5658607d7f37229fcda30a33651 Creating target for build PACKAGEBUILD-28055381 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28055381 Starting target for build PACKAGEBUILD-28055381 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28055381 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-28055381 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28055381 Updating target for build PACKAGEBUILD-28055381 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 Packages [1324 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe riscv64 Packages [14.4 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6035 kB] Get:9 http://ftpmaster.internal/ubuntu noble-updates/universe riscv64 Packages [2876 B] Get:10 http://ftpmaster.internal/ubuntu noble-updates/universe Translation-en [948 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 Packages [317 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [131 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe riscv64 Packages [345 kB] Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [144 kB] Fetched 23.8 MB in 25s (966 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libnsl-dev libperl5.36 libtirpc-dev libunistring2 perl-modules-5.36 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libapt-pkg6.0* libdb5.3* libext2fs2* libgdbm-compat4* libgdbm6* libgnutls30* libhogweed6* libnettle8* libnpth0* libpng16-16* libreadline8* libssl3* libtirpc3* usrmerge* The following NEW packages will be installed: cpp-13-riscv64-linux-gnu cpp-riscv64-linux-gnu g++-13-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-13-riscv64-linux-gnu gcc-14-base gcc-riscv64-linux-gnu libapt-pkg6.0t64 libdb5.3t64 libext2fs2t64 libgdbm-compat4t64 libgdbm6t64 libgnutls30t64 libhogweed6t64 libnettle8t64 libnpth0t64 libperl5.38t64 libpng16-16t64 libreadline8t64 libssl3t64 libtirpc3t64 libubsan1 libunistring5 perl-modules-5.38 The following packages will be upgraded: advancecomp apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-riscv64-linux-gnu bsdextrautils bsdutils bzip2 ca-certificates coreutils cpp cpp-13 dash debconf debconf-i18n debianutils diffutils dpkg dpkg-dev e2fsprogs fakeroot findutils g++ g++-13 gcc gcc-13 gcc-13-base gpg gpg-agent gpgconf gpgv grep gzip hostname init init-system-helpers krb5-locales libacl1 libapparmor1 libargon2-1 libasan8 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgcrypt20 libgmp10 libgomp1 libgpg-error-l10n libgpg-error0 libgpm2 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libjansson4 libjson-c5 libk5crypto3 libkeyutils1 libkmod2 libkrb5-3 libkrb5support0 liblocale-gettext-perl liblockfile-bin liblockfile1 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libncursesw6 libnsl-dev libnsl2 libnss-nisplus libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libproc2-0 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libss2 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtasn1-6 libtext-charwidth-perl libtext-iconv-perl libtinfo6 libtirpc-common libtirpc-dev libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base pinentry-curses procps psmisc readline-common rpcsvc-proto sed sensible-utils systemd systemd-dev systemd-sysv sysvinit-utils tar tzdata ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 169 upgraded, 24 newly installed, 14 to remove and 0 not upgraded. Need to get 115 MB of archives. After this operation, 71.2 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl-dev riscv64 1.3.0-3build3 [137 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcrypt-dev riscv64 1:4.4.36-4build1 [250 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 rpcsvc-proto riscv64 1.4.2-0ubuntu7 [65.8 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main riscv64 libc6-dev riscv64 2.39-0ubuntu8 [3458 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main riscv64 libc-dev-bin riscv64 2.39-0ubuntu8 [20.0 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc-common all 1.3.4+ds-1.1build1 [8094 B] Get:7 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc-dev riscv64 1.3.4+ds-1.1build1 [350 kB] Get:8 http://ftpmaster.internal/ubuntu noble/universe riscv64 libnss-nisplus riscv64 1.3-5build1 [23.8 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main riscv64 libtirpc3t64 riscv64 1.3.4+ds-1.1build1 [92.3 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main riscv64 libgssapi-krb5-2 riscv64 1.20.1-6ubuntu2 [153 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main riscv64 libkrb5-3 riscv64 1.20.1-6ubuntu2 [385 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main riscv64 libk5crypto3 riscv64 1.20.1-6ubuntu2 [108 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main riscv64 libkrb5support0 riscv64 1.20.1-6ubuntu2 [36.7 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 libacl1 riscv64 2.3.2-1build1 [18.7 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 libapparmor1 riscv64 4.0.0-beta3-0ubuntu3 [51.2 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit-common all 1:3.1.2-2.1build1 [5736 B] Get:17 http://ftpmaster.internal/ubuntu noble/main riscv64 libcap-ng0 riscv64 0.8.4-2build2 [15.5 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main riscv64 libaudit1 riscv64 1:3.1.2-2.1build1 [47.9 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libblkid1 riscv64 2.39.3-9ubuntu6 [204 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcap2 riscv64 1:2.66-5ubuntu2 [31.8 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcrypt1 riscv64 1:4.4.36-4build1 [102 kB] Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgpg-error-l10n all 1.47-3build2 [8064 B] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgpg-error0 riscv64 1.47-3build2 [75.8 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcrypt20 riscv64 1.10.3-2build1 [564 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 liblzma5 riscv64 5.6.1+really5.4.5-1 [130 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libzstd1 riscv64 1.5.5+dfsg2-2build1 [353 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkmod2 riscv64 31+20240202-2ubuntu6 [55.0 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblz4-1 riscv64 1.9.4-1build1 [85.7 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpcre2-8-0 riscv64 10.42-4ubuntu2 [152 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main riscv64 libselinux1 riscv64 3.5-2ubuntu2 [86.1 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmount1 riscv64 2.39.3-9ubuntu6 [212 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main riscv64 perl-modules-5.38 all 5.38.2-3.2build2 [3110 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-7 [779 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main riscv64 libgdbm6t64 riscv64 1.23-5.1build1 [35.9 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main riscv64 libgdbm-compat4t64 riscv64 1.23-5.1build1 [6884 B] Get:36 http://ftpmaster.internal/ubuntu noble/main riscv64 libperl5.38t64 riscv64 5.38.2-3.2build2 [4469 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 perl riscv64 5.38.2-3.2build2 [231 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main riscv64 perl-base riscv64 5.38.2-3.2build2 [1834 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main riscv64 liblocale-gettext-perl riscv64 1.07-6ubuntu5 [15.7 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main riscv64 libtext-iconv-perl riscv64 1.7-8build3 [13.5 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main riscv64 libtext-charwidth-perl riscv64 0.04-11build3 [9272 B] Get:42 http://ftpmaster.internal/ubuntu noble/main riscv64 openssl riscv64 3.0.13-0ubuntu3 [992 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main riscv64 libsystemd-shared riscv64 255.4-1ubuntu7 [2180 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcryptsetup12 riscv64 2:2.7.0-1ubuntu4 [274 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main riscv64 libssl3t64 riscv64 3.0.13-0ubuntu3 [1735 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd-dev all 255.4-1ubuntu7 [104 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd-sysv riscv64 255.4-1ubuntu7 [11.9 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main riscv64 systemd riscv64 255.4-1ubuntu7 [3553 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main riscv64 libsystemd0 riscv64 255.4-1ubuntu7 [458 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-modules-bin riscv64 1.5.3-5ubuntu5 [55.0 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-modules riscv64 1.5.3-5ubuntu5 [284 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 libnettle8t64 riscv64 3.9.1-2.2build1 [217 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 libhogweed6t64 riscv64 3.9.1-2.2build1 [200 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libp11-kit0 riscv64 0.25.3-4ubuntu2 [318 kB] Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libunistring5 riscv64 1.1-2build1 [542 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main riscv64 libgnutls30t64 riscv64 3.8.3-1.1ubuntu3 [1012 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main riscv64 libapt-pkg6.0t64 riscv64 2.7.14build2 [1050 kB] Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bzip2 riscv64 1.0.8-5.1 [35.0 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libbz2-1.0 riscv64 1.0.8-5.1 [40.2 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-14-base riscv64 14-20240330-1ubuntu2 [47.5 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-s1 riscv64 14-20240330-1ubuntu2 [60.7 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++6 riscv64 14-20240330-1ubuntu2 [806 kB] Get:63 http://ftpmaster.internal/ubuntu noble/main riscv64 libudev1 riscv64 255.4-1ubuntu7 [181 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libxxhash0 riscv64 0.8.2-2build1 [45.5 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main riscv64 zlib1g riscv64 1:1.3.dfsg-3.1ubuntu2 [60.8 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-2ubuntu6 [258 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main riscv64 libffi8 riscv64 3.4.6-1build1 [23.1 kB] Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libidn2-0 riscv64 2.3.7-2build1 [102 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtasn1-6 riscv64 4.19.0-3build1 [45.3 kB] Get:70 http://ftpmaster.internal/ubuntu noble/main riscv64 libdebconfclient0 riscv64 0.271ubuntu3 [11.2 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 base-passwd riscv64 3.6.3build1 [52.7 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libassuan0 riscv64 2.5.6-1build1 [39.4 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 libsqlite3-0 riscv64 3.45.1-1ubuntu2 [739 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main riscv64 gpg riscv64 2.4.4-2ubuntu17 [607 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main riscv64 libreadline8t64 riscv64 8.2-4build1 [156 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main riscv64 readline-common all 8.2-4build1 [56.5 kB] Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libncursesw6 riscv64 6.4+20240113-1ubuntu2 [155 kB] Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtinfo6 riscv64 6.4+20240113-1ubuntu2 [109 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main riscv64 gpg-agent riscv64 2.4.4-2ubuntu17 [282 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main riscv64 gpgconf riscv64 2.4.4-2ubuntu17 [133 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main riscv64 pinentry-curses riscv64 1.2.1-3ubuntu5 [40.6 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main riscv64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 libnpth0t64 riscv64 1.6-3.1build1 [8144 B] Get:84 http://ftpmaster.internal/ubuntu noble/main riscv64 gpgv riscv64 2.4.4-2ubuntu17 [276 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main riscv64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main riscv64 apt-utils riscv64 2.7.14build2 [226 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main riscv64 apt riscv64 2.7.14build2 [1349 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debconf-i18n all 1.5.86ubuntu1 [205 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 debconf all 1.5.86ubuntu1 [124 kB] Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam0g riscv64 1.5.3-5ubuntu5 [69.1 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main riscv64 libseccomp2 riscv64 2.5.5-1ubuntu3 [52.9 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libargon2-1 riscv64 0~20190702+dfsg-4build1 [25.0 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main riscv64 libdevmapper1.02.1 riscv64 2:1.02.185-3ubuntu3 [145 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libjson-c5 riscv64 0.17-1build1 [37.4 kB] Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libuuid1 riscv64 2.39.3-9ubuntu6 [37.7 kB] Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfdisk1 riscv64 2.39.3-9ubuntu6 [238 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 mount riscv64 2.39.3-9ubuntu6 [152 kB] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcom-err2 riscv64 1.47.0-2.4~exp1ubuntu4 [22.5 kB] Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libkeyutils1 riscv64 1.6.3-3build1 [9804 B] Get:100 http://ftpmaster.internal/ubuntu noble/main riscv64 libnsl2 riscv64 1.3.0-3build3 [43.3 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main riscv64 linux-libc-dev riscv64 6.8.0-22.22 [1567 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main riscv64 libc6 riscv64 2.39-0ubuntu8 [2776 kB] Get:103 http://ftpmaster.internal/ubuntu noble/main riscv64 libc-bin riscv64 2.39-0ubuntu8 [609 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main riscv64 base-files riscv64 13ubuntu9 [73.6 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main riscv64 debianutils riscv64 5.17build1 [89.8 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main riscv64 bash riscv64 5.2.21-2ubuntu4 [745 kB] Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bsdutils riscv64 1:2.39.3-9ubuntu6 [116 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main riscv64 coreutils riscv64 9.4-3ubuntu6 [1459 kB] Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 tar riscv64 1.35+dfsg-3build1 [269 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main riscv64 dpkg riscv64 1.22.6ubuntu6 [1285 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main riscv64 dash riscv64 0.5.12-6ubuntu5 [93.2 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main riscv64 diffutils riscv64 1:3.10-1build1 [184 kB] Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 findutils riscv64 4.9.0-5build1 [315 kB] Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 grep riscv64 3.11-4build1 [169 kB] Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gzip riscv64 1.12-1ubuntu3 [102 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main riscv64 hostname riscv64 3.23+nmu2ubuntu2 [11.4 kB] Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 login riscv64 1:4.13+dfsg1-4ubuntu3 [204 kB] Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-bin riscv64 6.4+20240113-1ubuntu2 [187 kB] Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 sed riscv64 4.9-2build1 [200 kB] Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 util-linux riscv64 2.39.3-9ubuntu6 [1330 kB] Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 ncurses-base all 6.4+20240113-1ubuntu2 [25.5 kB] Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 sysvinit-utils riscv64 3.08-6ubuntu3 [35.1 kB] Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 logsave riscv64 1.47.0-2.4~exp1ubuntu4 [22.3 kB] Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libext2fs2t64 riscv64 1.47.0-2.4~exp1ubuntu4 [243 kB] Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 e2fsprogs riscv64 1.47.0-2.4~exp1ubuntu4 [604 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main riscv64 optipng riscv64 0.7.8+ds-1build2 [115 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main riscv64 libpng16-16t64 riscv64 1.6.43-5build1 [193 kB] Get:128 http://ftpmaster.internal/ubuntu noble/main riscv64 init riscv64 1.66ubuntu1 [6190 B] Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsmartcols1 riscv64 2.39.3-9ubuntu6 [146 kB] Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 uuid-runtime riscv64 2.39.3-9ubuntu6 [49.2 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main riscv64 libattr1 riscv64 1:2.5.2-1build1 [11.4 kB] Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmd0 riscv64 1.1.0-2build1 [30.5 kB] Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpam-runtime all 1.5.3-5ubuntu5 [40.8 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main riscv64 libsemanage-common all 3.5-1build5 [10.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libsepol2 riscv64 3.5-2build1 [319 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main riscv64 libsemanage2 riscv64 3.5-1build5 [101 kB] Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 passwd riscv64 1:4.13+dfsg1-4ubuntu3 [864 kB] Get:138 http://ftpmaster.internal/ubuntu noble/main riscv64 libproc2-0 riscv64 2:4.0.4-4ubuntu3 [60.9 kB] Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libss2 riscv64 1.47.0-2.4~exp1ubuntu4 [17.1 kB] Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 mawk riscv64 1.3.4.20240123-1build1 [129 kB] Get:141 http://ftpmaster.internal/ubuntu noble/main riscv64 procps riscv64 2:4.0.4-4ubuntu3 [715 kB] Get:142 http://ftpmaster.internal/ubuntu noble/main riscv64 sensible-utils all 0.0.22 [22.5 kB] Get:143 http://ftpmaster.internal/ubuntu noble/main riscv64 ca-certificates all 20240203 [159 kB] Get:144 http://ftpmaster.internal/ubuntu noble/main riscv64 krb5-locales all 1.20.1-6ubuntu2 [13.8 kB] Get:145 http://ftpmaster.internal/ubuntu noble/main riscv64 tzdata all 2024a-2ubuntu1 [273 kB] Get:146 http://ftpmaster.internal/ubuntu noble/main riscv64 bash-completion all 1:2.11-8 [180 kB] Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 bsdextrautils riscv64 2.39.3-9ubuntu6 [92.2 kB] Get:148 http://ftpmaster.internal/ubuntu noble/main riscv64 libgpm2 riscv64 1.20.7-11 [15.0 kB] Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libip4tc2 riscv64 1.8.10-3ubuntu2 [23.9 kB] Get:150 http://ftpmaster.internal/ubuntu noble/main riscv64 libjansson4 riscv64 2.14-2build2 [34.7 kB] Get:151 http://ftpmaster.internal/ubuntu noble/main riscv64 psmisc riscv64 23.7-1build1 [177 kB] Get:152 http://ftpmaster.internal/ubuntu noble/main riscv64 xz-utils riscv64 5.6.1+really5.4.5-1 [269 kB] Get:153 http://ftpmaster.internal/ubuntu noble/main riscv64 advancecomp riscv64 2.5-1build1 [237 kB] Get:154 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf0 riscv64 2.42-4ubuntu2 [104 kB] Get:155 http://ftpmaster.internal/ubuntu noble/main riscv64 libctf-nobfd0 riscv64 2.42-4ubuntu2 [106 kB] Get:156 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-riscv64-linux-gnu riscv64 2.42-4ubuntu2 [899 kB] Get:157 http://ftpmaster.internal/ubuntu noble/main riscv64 libbinutils riscv64 2.42-4ubuntu2 [566 kB] Get:158 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils riscv64 2.42-4ubuntu2 [2984 B] Get:159 http://ftpmaster.internal/ubuntu noble/main riscv64 binutils-common riscv64 2.42-4ubuntu2 [209 kB] Get:160 http://ftpmaster.internal/ubuntu noble/main riscv64 libsframe1 riscv64 2.42-4ubuntu2 [15.7 kB] Get:161 http://ftpmaster.internal/ubuntu noble/main riscv64 libgomp1 riscv64 14-20240330-1ubuntu2 [145 kB] Get:162 http://ftpmaster.internal/ubuntu noble/main riscv64 libatomic1 riscv64 14-20240330-1ubuntu2 [9490 B] Get:163 http://ftpmaster.internal/ubuntu noble/main riscv64 libasan8 riscv64 14-20240330-1ubuntu2 [2621 kB] Get:164 http://ftpmaster.internal/ubuntu noble/main riscv64 libubsan1 riscv64 14-20240330-1ubuntu2 [1076 kB] Get:165 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-13 riscv64 13.2.0-23ubuntu3 [14.5 kB] Get:166 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13 riscv64 13.2.0-23ubuntu3 [450 kB] Get:167 http://ftpmaster.internal/ubuntu noble/main riscv64 libstdc++-13-dev riscv64 13.2.0-23ubuntu3 [5666 kB] Get:168 http://ftpmaster.internal/ubuntu noble/main riscv64 libgcc-13-dev riscv64 13.2.0-23ubuntu3 [3858 kB] Get:169 http://ftpmaster.internal/ubuntu noble/main riscv64 libcc1-0 riscv64 14-20240330-1ubuntu2 [45.5 kB] Get:170 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-13 riscv64 13.2.0-23ubuntu3 [1030 B] Get:171 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13-base riscv64 13.2.0-23ubuntu3 [48.7 kB] Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libisl23 riscv64 0.26-3build1 [718 kB] Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmpfr6 riscv64 4.2.1-1build1 [293 kB] Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libmpc3 riscv64 1.3.1-1build1 [59.7 kB] Get:175 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [19.7 MB] Get:176 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [11.6 MB] Get:177 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-13-riscv64-linux-gnu riscv64 13.2.0-23ubuntu3 [10.3 MB] Get:178 http://ftpmaster.internal/ubuntu noble/main riscv64 g++ riscv64 4:13.2.0-7ubuntu1 [1082 B] Get:179 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc riscv64 4:13.2.0-7ubuntu1 [5016 B] Get:180 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp riscv64 4:13.2.0-7ubuntu1 [22.4 kB] Get:181 http://ftpmaster.internal/ubuntu noble/main riscv64 cpp-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [5316 B] Get:182 http://ftpmaster.internal/ubuntu noble/main riscv64 gcc-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [1202 B] Get:183 http://ftpmaster.internal/ubuntu noble/main riscv64 g++-riscv64-linux-gnu riscv64 4:13.2.0-7ubuntu1 [960 B] Get:184 http://ftpmaster.internal/ubuntu noble/main riscv64 dpkg-dev all 1.22.6ubuntu6 [1074 kB] Get:185 http://ftpmaster.internal/ubuntu noble/main riscv64 libdpkg-perl all 1.22.6ubuntu6 [268 kB] Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 patch riscv64 2.7.6-7build3 [113 kB] Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 make riscv64 4.3-4.1build2 [178 kB] Get:188 http://ftpmaster.internal/ubuntu noble/main riscv64 lto-disabled-list all 47 [12.4 kB] Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libfakeroot riscv64 1.33-1build1 [34.7 kB] Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 fakeroot riscv64 1.33-1build1 [78.4 kB] Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblockfile-bin riscv64 1.17-1build3 [11.6 kB] Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 liblockfile1 riscv64 1.17-1build3 [7002 B] Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 lockfile-progs riscv64 0.1.19build2 [8288 B] Preconfiguring packages ... Fetched 115 MB in 14s (8356 kB/s) (Reading database ... 13552 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3build3_riscv64.deb ... Unpacking libnsl-dev:riscv64 (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../1-libcrypt-dev_1%3a4.4.36-4build1_riscv64.deb ... Unpacking libcrypt-dev:riscv64 (1:4.4.36-4build1) over (1:4.4.36-2) ... Preparing to unpack .../2-rpcsvc-proto_1.4.2-0ubuntu7_riscv64.deb ... Unpacking rpcsvc-proto (1.4.2-0ubuntu7) over (1.4.2-0ubuntu6) ... Preparing to unpack .../3-libc6-dev_2.39-0ubuntu8_riscv64.deb ... Unpacking libc6-dev:riscv64 (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../4-libc-dev-bin_2.39-0ubuntu8_riscv64.deb ... Unpacking libc-dev-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Preparing to unpack .../5-libtirpc-common_1.3.4+ds-1.1build1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../6-libtirpc-dev_1.3.4+ds-1.1build1_riscv64.deb ... Unpacking libtirpc-dev:riscv64 (1.3.4+ds-1.1build1) over (1.3.3+ds-1) ... Preparing to unpack .../7-libnss-nisplus_1.3-5build1_riscv64.deb ... Unpacking libnss-nisplus:riscv64 (1.3-5build1) over (1.3-0ubuntu6) ... dpkg: libtirpc3:riscv64: dependency problems, but removing anyway as you requested: libnsl2:riscv64 depends on libtirpc3 (>= 1.0.2). (Reading database ... 13555 files and directories currently installed.) Removing libtirpc3:riscv64 (1.3.3+ds-1) ... Selecting previously unselected package libtirpc3t64:riscv64. (Reading database ... 13549 files and directories currently installed.) Preparing to unpack .../0-libtirpc3t64_1.3.4+ds-1.1build1_riscv64.deb ... Adding 'diversion of /lib/riscv64-linux-gnu/libtirpc.so.3 to /lib/riscv64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/riscv64-linux-gnu/libtirpc.so.3.0.0 to /lib/riscv64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:riscv64 (1.3.4+ds-1.1build1) ... Preparing to unpack .../1-libgssapi-krb5-2_1.20.1-6ubuntu2_riscv64.deb ... Unpacking libgssapi-krb5-2:riscv64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../2-libkrb5-3_1.20.1-6ubuntu2_riscv64.deb ... Unpacking libkrb5-3:riscv64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../3-libk5crypto3_1.20.1-6ubuntu2_riscv64.deb ... Unpacking libk5crypto3:riscv64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../4-libkrb5support0_1.20.1-6ubuntu2_riscv64.deb ... Unpacking libkrb5support0:riscv64 (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../5-libacl1_2.3.2-1build1_riscv64.deb ... Unpacking libacl1:riscv64 (2.3.2-1build1) over (2.3.1-3) ... Setting up libacl1:riscv64 (2.3.2-1build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libapparmor1_4.0.0-beta3-0ubuntu3_riscv64.deb ... Unpacking libapparmor1:riscv64 (4.0.0-beta3-0ubuntu3) over (4.0.0~alpha2-0ubuntu5) ... Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1build1_all.deb ... Unpacking libaudit-common (1:3.1.2-2.1build1) over (1:3.1.1-1) ... Setting up libaudit-common (1:3.1.2-2.1build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libcap-ng0_0.8.4-2build2_riscv64.deb ... Unpacking libcap-ng0:riscv64 (0.8.4-2build2) over (0.8.3-1build2) ... Setting up libcap-ng0:riscv64 (0.8.4-2build2) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a3.1.2-2.1build1_riscv64.deb ... Unpacking libaudit1:riscv64 (1:3.1.2-2.1build1) over (1:3.1.1-1) ... Setting up libaudit1:riscv64 (1:3.1.2-2.1build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libblkid1_2.39.3-9ubuntu6_riscv64.deb ... Unpacking libblkid1:riscv64 (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... Setting up libblkid1:riscv64 (2.39.3-9ubuntu6) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.66-5ubuntu2_riscv64.deb ... Unpacking libcap2:riscv64 (1:2.66-5ubuntu2) over (1:2.66-4ubuntu1) ... Setting up libcap2:riscv64 (1:2.66-5ubuntu2) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libcrypt1_1%3a4.4.36-4build1_riscv64.deb ... Unpacking libcrypt1:riscv64 (1:4.4.36-4build1) over (1:4.4.36-2) ... Setting up libcrypt1:riscv64 (1:4.4.36-4build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libgpg-error-l10n_1.47-3build2_all.deb ... Unpacking libgpg-error-l10n (1.47-3build2) over (1.47-2) ... Preparing to unpack .../libgpg-error0_1.47-3build2_riscv64.deb ... Unpacking libgpg-error0:riscv64 (1.47-3build2) over (1.47-2) ... Setting up libgpg-error0:riscv64 (1.47-3build2) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.10.3-2build1_riscv64.deb ... Unpacking libgcrypt20:riscv64 (1.10.3-2build1) over (1.10.2-3ubuntu1) ... Setting up libgcrypt20:riscv64 (1.10.3-2build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../liblzma5_5.6.1+really5.4.5-1_riscv64.deb ... Unpacking liblzma5:riscv64 (5.6.1+really5.4.5-1) over (5.4.1-0.2) ... Setting up liblzma5:riscv64 (5.6.1+really5.4.5-1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libzstd1_1.5.5+dfsg2-2build1_riscv64.deb ... Unpacking libzstd1:riscv64 (1.5.5+dfsg2-2build1) over (1.5.5+dfsg2-1ubuntu2) ... Setting up libzstd1:riscv64 (1.5.5+dfsg2-2build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libkmod2_31+20240202-2ubuntu6_riscv64.deb ... Unpacking libkmod2:riscv64 (31+20240202-2ubuntu6) over (30+20230519-1ubuntu3) ... Preparing to unpack .../liblz4-1_1.9.4-1build1_riscv64.deb ... Unpacking liblz4-1:riscv64 (1.9.4-1build1) over (1.9.4-1) ... Setting up liblz4-1:riscv64 (1.9.4-1build1) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libpcre2-8-0_10.42-4ubuntu2_riscv64.deb ... Unpacking libpcre2-8-0:riscv64 (10.42-4ubuntu2) over (10.42-4) ... Setting up libpcre2-8-0:riscv64 (10.42-4ubuntu2) ... (Reading database ... 13560 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2ubuntu2_riscv64.deb ... Unpacking libselinux1:riscv64 (3.5-2ubuntu2) over (3.5-1) ... Setting up libselinux1:riscv64 (3.5-2ubuntu2) ... (Reading database ... 13561 files and directories currently installed.) Preparing to unpack .../libmount1_2.39.3-9ubuntu6_riscv64.deb ... Unpacking libmount1:riscv64 (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... Setting up libmount1:riscv64 (2.39.3-9ubuntu6) ... (Reading database ... 13561 files and directories currently installed.) Preparing to unpack .../perl_5.38.2-3.2build2_riscv64.deb ... Unpacking perl (5.38.2-3.2build2) over (5.36.0-9ubuntu1) ... Selecting previously unselected package perl-modules-5.38. Preparing to unpack .../perl-modules-5.38_5.38.2-3.2build2_all.deb ... Unpacking perl-modules-5.38 (5.38.2-3.2build2) ... dpkg: libdb5.3:riscv64: dependency problems, but removing anyway as you requested: libperl5.36:riscv64 depends on libdb5.3. libpam-modules:riscv64 depends on libdb5.3. apt-utils depends on libdb5.3. (Reading database ... 14973 files and directories currently installed.) Removing libdb5.3:riscv64 (5.3.28+dfsg2-2) ... Selecting previously unselected package libdb5.3t64:riscv64. (Reading database ... 14967 files and directories currently installed.) Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-7_riscv64.deb ... Unpacking libdb5.3t64:riscv64 (5.3.28+dfsg2-7) ... dpkg: libgdbm6:riscv64: dependency problems, but removing anyway as you requested: libperl5.36:riscv64 depends on libgdbm6 (>= 1.21). libgdbm-compat4:riscv64 depends on libgdbm6 (>= 1.16). (Reading database ... 14973 files and directories currently installed.) Removing libgdbm6:riscv64 (1.23-3) ... Selecting previously unselected package libgdbm6t64:riscv64. (Reading database ... 14968 files and directories currently installed.) Preparing to unpack .../libgdbm6t64_1.23-5.1build1_riscv64.deb ... Unpacking libgdbm6t64:riscv64 (1.23-5.1build1) ... dpkg: libgdbm-compat4:riscv64: dependency problems, but removing anyway as you requested: libperl5.36:riscv64 depends on libgdbm-compat4 (>= 1.18-3). (Reading database ... 14974 files and directories currently installed.) Removing libgdbm-compat4:riscv64 (1.23-3) ... Selecting previously unselected package libgdbm-compat4t64:riscv64. (Reading database ... 14969 files and directories currently installed.) Preparing to unpack .../libgdbm-compat4t64_1.23-5.1build1_riscv64.deb ... Unpacking libgdbm-compat4t64:riscv64 (1.23-5.1build1) ... Selecting previously unselected package libperl5.38t64:riscv64. Preparing to unpack .../libperl5.38t64_5.38.2-3.2build2_riscv64.deb ... Unpacking libperl5.38t64:riscv64 (5.38.2-3.2build2) ... Preparing to unpack .../perl-base_5.38.2-3.2build2_riscv64.deb ... Unpacking perl-base (5.38.2-3.2build2) over (5.36.0-9ubuntu1) ... Setting up perl-base (5.38.2-3.2build2) ... (Reading database ... 15495 files and directories currently installed.) Preparing to unpack .../0-liblocale-gettext-perl_1.07-6ubuntu5_riscv64.deb ... Unpacking liblocale-gettext-perl (1.07-6ubuntu5) over (1.07-6) ... Preparing to unpack .../1-libtext-iconv-perl_1.7-8build3_riscv64.deb ... Unpacking libtext-iconv-perl:riscv64 (1.7-8build3) over (1.7-8) ... Preparing to unpack .../2-libtext-charwidth-perl_0.04-11build3_riscv64.deb ... Unpacking libtext-charwidth-perl:riscv64 (0.04-11build3) over (0.04-11) ... Preparing to unpack .../3-openssl_3.0.13-0ubuntu3_riscv64.deb ... Unpacking openssl (3.0.13-0ubuntu3) over (3.0.10-1ubuntu2) ... Preparing to unpack .../4-libsystemd-shared_255.4-1ubuntu7_riscv64.deb ... Unpacking libsystemd-shared:riscv64 (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../5-libcryptsetup12_2%3a2.7.0-1ubuntu4_riscv64.deb ... Unpacking libcryptsetup12:riscv64 (2:2.7.0-1ubuntu4) over (2:2.6.1-4ubuntu3) ... dpkg: libssl3:riscv64: dependency problems, but removing anyway as you requested: systemd depends on libssl3 (>= 3.0.0). (Reading database ... 15494 files and directories currently installed.) Removing libssl3:riscv64 (3.0.10-1ubuntu2) ... Selecting previously unselected package libssl3t64:riscv64. (Reading database ... 15483 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.0.13-0ubuntu3_riscv64.deb ... Unpacking libssl3t64:riscv64 (3.0.13-0ubuntu3) ... Setting up libssl3t64:riscv64 (3.0.13-0ubuntu3) ... (Reading database ... 15496 files and directories currently installed.) Preparing to unpack .../systemd-dev_255.4-1ubuntu7_all.deb ... Unpacking systemd-dev (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd-sysv_255.4-1ubuntu7_riscv64.deb ... Unpacking systemd-sysv (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Preparing to unpack .../systemd_255.4-1ubuntu7_riscv64.deb ... Unpacking systemd (255.4-1ubuntu7) over (253.5-1ubuntu6) ... dpkg: warning: unable to delete old directory '/lib/systemd/system-preset': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system-generators': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@0.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user@.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/user-.slice.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/timers.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/systemd-localed.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sysinit.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/sockets.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rescue.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/rc-local.service.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/multi-user.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-fs.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/initrd-root-device.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/graphical.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/system/getty.target.wants': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/network': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd/journald.conf.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/modprobe.d': Directory not empty Preparing to unpack .../libsystemd0_255.4-1ubuntu7_riscv64.deb ... Unpacking libsystemd0:riscv64 (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Setting up libsystemd0:riscv64 (255.4-1ubuntu7) ... (Reading database ... 15658 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu5_riscv64.deb ... Unpacking libpam-modules-bin (1.5.3-5ubuntu5) over (1.5.2-6ubuntu1) ... Setting up libpam-modules-bin (1.5.3-5ubuntu5) ... (Reading database ... 15657 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.5.3-5ubuntu5_riscv64.deb ... Unpacking libpam-modules:riscv64 (1.5.3-5ubuntu5) over (1.5.2-6ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/riscv64-linux-gnu/security': Directory not empty Setting up libpam-modules:riscv64 (1.5.3-5ubuntu5) ... Installing new version of config file /etc/security/namespace.init ... dpkg: libhogweed6:riscv64: dependency problems, but removing anyway as you requested: libgnutls30:riscv64 depends on libhogweed6 (>= 3.6). (Reading database ... 15654 files and directories currently installed.) Removing libhogweed6:riscv64 (3.9.1-2) ... dpkg: libnettle8:riscv64: dependency problems, but removing anyway as you requested: libgnutls30:riscv64 depends on libnettle8 (>= 3.7~). Removing libnettle8:riscv64 (3.9.1-2) ... Selecting previously unselected package libnettle8t64:riscv64. (Reading database ... 15642 files and directories currently installed.) Preparing to unpack .../libnettle8t64_3.9.1-2.2build1_riscv64.deb ... Unpacking libnettle8t64:riscv64 (3.9.1-2.2build1) ... Setting up libnettle8t64:riscv64 (3.9.1-2.2build1) ... Selecting previously unselected package libhogweed6t64:riscv64. (Reading database ... 15650 files and directories currently installed.) Preparing to unpack .../libhogweed6t64_3.9.1-2.2build1_riscv64.deb ... Unpacking libhogweed6t64:riscv64 (3.9.1-2.2build1) ... Setting up libhogweed6t64:riscv64 (3.9.1-2.2build1) ... (Reading database ... 15656 files and directories currently installed.) Preparing to unpack .../libp11-kit0_0.25.3-4ubuntu2_riscv64.deb ... Unpacking libp11-kit0:riscv64 (0.25.3-4ubuntu2) over (0.25.0-4ubuntu1) ... Setting up libp11-kit0:riscv64 (0.25.3-4ubuntu2) ... Selecting previously unselected package libunistring5:riscv64. (Reading database ... 15656 files and directories currently installed.) Preparing to unpack .../libunistring5_1.1-2build1_riscv64.deb ... Unpacking libunistring5:riscv64 (1.1-2build1) ... Setting up libunistring5:riscv64 (1.1-2build1) ... dpkg: libgnutls30:riscv64: dependency problems, but removing anyway as you requested: apt depends on libgnutls30 (>= 3.7.5). (Reading database ... 15661 files and directories currently installed.) Removing libgnutls30:riscv64 (3.8.1-4ubuntu1) ... Selecting previously unselected package libgnutls30t64:riscv64. (Reading database ... 15651 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu3_riscv64.deb ... Unpacking libgnutls30t64:riscv64 (3.8.3-1.1ubuntu3) ... Setting up libgnutls30t64:riscv64 (3.8.3-1.1ubuntu3) ... dpkg: libapt-pkg6.0:riscv64: dependency problems, but removing anyway as you requested: apt-utils depends on libapt-pkg6.0 (>= 2.7.3). apt depends on libapt-pkg6.0 (>= 2.7.3). (Reading database ... 15663 files and directories currently installed.) Removing libapt-pkg6.0:riscv64 (2.7.3) ... Selecting previously unselected package libapt-pkg6.0t64:riscv64. (Reading database ... 15614 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0t64_2.7.14build2_riscv64.deb ... Unpacking libapt-pkg6.0t64:riscv64 (2.7.14build2) ... Setting up libapt-pkg6.0t64:riscv64 (2.7.14build2) ... (Reading database ... 15664 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-5.1_riscv64.deb ... Unpacking bzip2 (1.0.8-5.1) over (1.0.8-5build1) ... dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bzcat' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bunzip2' and '/usr/bin/bzcat') dpkg: warning: old file '/bin/bunzip2' is the same as several new files! (both '/usr/bin/bzcat' and '/usr/bin/bzip2') Preparing to unpack .../libbz2-1.0_1.0.8-5.1_riscv64.deb ... Unpacking libbz2-1.0:riscv64 (1.0.8-5.1) over (1.0.8-5build1) ... Setting up libbz2-1.0:riscv64 (1.0.8-5.1) ... Selecting previously unselected package gcc-14-base:riscv64. (Reading database ... 15664 files and directories currently installed.) Preparing to unpack .../gcc-14-base_14-20240330-1ubuntu2_riscv64.deb ... Unpacking gcc-14-base:riscv64 (14-20240330-1ubuntu2) ... Setting up gcc-14-base:riscv64 (14-20240330-1ubuntu2) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libgcc-s1_14-20240330-1ubuntu2_riscv64.deb ... Unpacking libgcc-s1:riscv64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Setting up libgcc-s1:riscv64 (14-20240330-1ubuntu2) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libstdc++6_14-20240330-1ubuntu2_riscv64.deb ... Unpacking libstdc++6:riscv64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Setting up libstdc++6:riscv64 (14-20240330-1ubuntu2) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libudev1_255.4-1ubuntu7_riscv64.deb ... Unpacking libudev1:riscv64 (255.4-1ubuntu7) over (253.5-1ubuntu6) ... Setting up libudev1:riscv64 (255.4-1ubuntu7) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libxxhash0_0.8.2-2build1_riscv64.deb ... Unpacking libxxhash0:riscv64 (0.8.2-2build1) over (0.8.1-1) ... Setting up libxxhash0:riscv64 (0.8.2-2build1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu2_riscv64.deb ... Unpacking zlib1g:riscv64 (1:1.3.dfsg-3.1ubuntu2) over (1:1.2.13.dfsg-1ubuntu5) ... Setting up zlib1g:riscv64 (1:1.3.dfsg-3.1ubuntu2) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.3.0+dfsg-2ubuntu6_riscv64.deb ... Unpacking libgmp10:riscv64 (2:6.3.0+dfsg-2ubuntu6) over (2:6.3.0+dfsg-2ubuntu4) ... Setting up libgmp10:riscv64 (2:6.3.0+dfsg-2ubuntu6) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libffi8_3.4.6-1build1_riscv64.deb ... Unpacking libffi8:riscv64 (3.4.6-1build1) over (3.4.4-1) ... Setting up libffi8:riscv64 (3.4.6-1build1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.7-2build1_riscv64.deb ... Unpacking libidn2-0:riscv64 (2.3.7-2build1) over (2.3.4-1) ... Setting up libidn2-0:riscv64 (2.3.7-2build1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libtasn1-6_4.19.0-3build1_riscv64.deb ... Unpacking libtasn1-6:riscv64 (4.19.0-3build1) over (4.19.0-3) ... Setting up libtasn1-6:riscv64 (4.19.0-3build1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.271ubuntu3_riscv64.deb ... Unpacking libdebconfclient0:riscv64 (0.271ubuntu3) over (0.270ubuntu1) ... Setting up libdebconfclient0:riscv64 (0.271ubuntu3) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../base-passwd_3.6.3build1_riscv64.deb ... Unpacking base-passwd (3.6.3build1) over (3.6.1) ... Setting up base-passwd (3.6.3build1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libassuan0_2.5.6-1build1_riscv64.deb ... Unpacking libassuan0:riscv64 (2.5.6-1build1) over (2.5.6-1) ... Setting up libassuan0:riscv64 (2.5.6-1build1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../libsqlite3-0_3.45.1-1ubuntu2_riscv64.deb ... Unpacking libsqlite3-0:riscv64 (3.45.1-1ubuntu2) over (3.42.0-1) ... Preparing to unpack .../gpg_2.4.4-2ubuntu17_riscv64.deb ... Unpacking gpg (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... dpkg: libreadline8:riscv64: dependency problems, but removing anyway as you requested: gpgconf depends on libreadline8 (>= 6.0). (Reading database ... 15669 files and directories currently installed.) Removing libreadline8:riscv64 (8.2-1.3) ... Selecting previously unselected package libreadline8t64:riscv64. (Reading database ... 15657 files and directories currently installed.) Preparing to unpack .../libreadline8t64_8.2-4build1_riscv64.deb ... Adding 'diversion of /lib/riscv64-linux-gnu/libhistory.so.8 to /lib/riscv64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libhistory.so.8.2 to /lib/riscv64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libreadline.so.8 to /lib/riscv64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libreadline.so.8.2 to /lib/riscv64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:riscv64 (8.2-4build1) ... Preparing to unpack .../readline-common_8.2-4build1_all.deb ... Unpacking readline-common (8.2-4build1) over (8.2-1.3) ... Preparing to unpack .../libncursesw6_6.4+20240113-1ubuntu2_riscv64.deb ... Unpacking libncursesw6:riscv64 (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... Preparing to unpack .../libtinfo6_6.4+20240113-1ubuntu2_riscv64.deb ... Unpacking libtinfo6:riscv64 (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... Setting up libtinfo6:riscv64 (6.4+20240113-1ubuntu2) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../gpg-agent_2.4.4-2ubuntu17_riscv64.deb ... Unpacking gpg-agent (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../gpgconf_2.4.4-2ubuntu17_riscv64.deb ... Unpacking gpgconf (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... Preparing to unpack .../pinentry-curses_1.2.1-3ubuntu5_riscv64.deb ... Unpacking pinentry-curses (1.2.1-3ubuntu5) over (1.2.1-1ubuntu1) ... Preparing to unpack .../init-system-helpers_1.66ubuntu1_all.deb ... Unpacking init-system-helpers (1.66ubuntu1) over (1.65.2ubuntu1) ... Setting up init-system-helpers (1.66ubuntu1) ... (Reading database ... 15676 files and directories currently installed.) Removing libnpth0:riscv64 (1.6-3build2) ... Selecting previously unselected package libnpth0t64:riscv64. (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../libnpth0t64_1.6-3.1build1_riscv64.deb ... Unpacking libnpth0t64:riscv64 (1.6-3.1build1) ... Setting up libnpth0t64:riscv64 (1.6-3.1build1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../gpgv_2.4.4-2ubuntu17_riscv64.deb ... Unpacking gpgv (2.4.4-2ubuntu17) over (2.2.40-1.1ubuntu1) ... Setting up gpgv (2.4.4-2ubuntu17) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2023.11.28.1_all.deb ... Unpacking ubuntu-keyring (2023.11.28.1) over (2021.03.26) ... Setting up ubuntu-keyring (2023.11.28.1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../apt-utils_2.7.14build2_riscv64.deb ... Unpacking apt-utils (2.7.14build2) over (2.7.3) ... Preparing to unpack .../apt_2.7.14build2_riscv64.deb ... Unpacking apt (2.7.14build2) over (2.7.3) ... Setting up apt (2.7.14build2) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../debconf-i18n_1.5.86ubuntu1_all.deb ... Unpacking debconf-i18n (1.5.86ubuntu1) over (1.5.82) ... Preparing to unpack .../debconf_1.5.86ubuntu1_all.deb ... Unpacking debconf (1.5.86ubuntu1) over (1.5.82) ... Setting up debconf (1.5.86ubuntu1) ... Installing new version of config file /etc/debconf.conf ... (Reading database ... 15676 files and directories currently installed.) Preparing to unpack .../libpam0g_1.5.3-5ubuntu5_riscv64.deb ... Unpacking libpam0g:riscv64 (1.5.3-5ubuntu5) over (1.5.2-6ubuntu1) ... Setting up libpam0g:riscv64 (1.5.3-5ubuntu5) ... (Reading database ... 15675 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.5.5-1ubuntu3_riscv64.deb ... Unpacking libseccomp2:riscv64 (2.5.5-1ubuntu3) over (2.5.4-1ubuntu3) ... Preparing to unpack .../libargon2-1_0~20190702+dfsg-4build1_riscv64.deb ... Unpacking libargon2-1:riscv64 (0~20190702+dfsg-4build1) over (0~20190702+dfsg-3) ... Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.185-3ubuntu3_riscv64.deb ... Unpacking libdevmapper1.02.1:riscv64 (2:1.02.185-3ubuntu3) over (2:1.02.185-2ubuntu1) ... Preparing to unpack .../libjson-c5_0.17-1build1_riscv64.deb ... Unpacking libjson-c5:riscv64 (0.17-1build1) over (0.17-1) ... Preparing to unpack .../libuuid1_2.39.3-9ubuntu6_riscv64.deb ... Unpacking libuuid1:riscv64 (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... Setting up libuuid1:riscv64 (2.39.3-9ubuntu6) ... (Reading database ... 15675 files and directories currently installed.) Preparing to unpack .../0-libfdisk1_2.39.3-9ubuntu6_riscv64.deb ... Unpacking libfdisk1:riscv64 (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... Preparing to unpack .../1-mount_2.39.3-9ubuntu6_riscv64.deb ... Unpacking mount (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... Preparing to unpack .../2-libcom-err2_1.47.0-2.4~exp1ubuntu4_riscv64.deb ... Unpacking libcom-err2:riscv64 (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... Preparing to unpack .../3-libkeyutils1_1.6.3-3build1_riscv64.deb ... Unpacking libkeyutils1:riscv64 (1.6.3-3build1) over (1.6.3-2) ... Preparing to unpack .../4-libnsl2_1.3.0-3build3_riscv64.deb ... Unpacking libnsl2:riscv64 (1.3.0-3build3) over (1.3.0-2build2) ... Preparing to unpack .../5-linux-libc-dev_6.8.0-22.22_riscv64.deb ... Unpacking linux-libc-dev:riscv64 (6.8.0-22.22) over (6.5.0-9.9) ... Preparing to unpack .../6-libc6_2.39-0ubuntu8_riscv64.deb ... Unpacking libc6:riscv64 (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Setting up libc6:riscv64 (2.39-0ubuntu8) ... (Reading database ... 15687 files and directories currently installed.) Preparing to unpack .../libc-bin_2.39-0ubuntu8_riscv64.deb ... Unpacking libc-bin (2.39-0ubuntu8) over (2.38-1ubuntu6) ... Setting up libc-bin (2.39-0ubuntu8) ... (Reading database ... 15687 files and directories currently installed.) Preparing to unpack .../base-files_13ubuntu9_riscv64.deb ... Unpacking base-files (13ubuntu9) over (13ubuntu3) ... Setting up base-files (13ubuntu9) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/10-help-text ... (Reading database ... 15696 files and directories currently installed.) Preparing to unpack .../debianutils_5.17build1_riscv64.deb ... Unpacking debianutils (5.17build1) over (5.8-1) ... Setting up debianutils (5.17build1) ... (Reading database ... 15695 files and directories currently installed.) Preparing to unpack .../bash_5.2.21-2ubuntu4_riscv64.deb ... Unpacking bash (5.2.21-2ubuntu4) over (5.2.15-2ubuntu1) ... Setting up bash (5.2.21-2ubuntu4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 15695 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu6_riscv64.deb ... Unpacking bsdutils (1:2.39.3-9ubuntu6) over (1:2.39.1-4ubuntu2) ... Setting up bsdutils (1:2.39.3-9ubuntu6) ... (Reading database ... 15695 files and directories currently installed.) Removing usrmerge (35ubuntu1) ... (Reading database ... 15669 files and directories currently installed.) Preparing to unpack .../coreutils_9.4-3ubuntu6_riscv64.deb ... Unpacking coreutils (9.4-3ubuntu6) over (9.1-1ubuntu2) ... Setting up coreutils (9.4-3ubuntu6) ... (Reading database ... 15674 files and directories currently installed.) Preparing to unpack .../tar_1.35+dfsg-3build1_riscv64.deb ... Unpacking tar (1.35+dfsg-3build1) over (1.34+dfsg-1.2ubuntu1) ... Setting up tar (1.35+dfsg-3build1) ... (Reading database ... 15674 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.6ubuntu6_riscv64.deb ... Unpacking dpkg (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Setting up dpkg (1.22.6ubuntu6) ... (Reading database ... 15672 files and directories currently installed.) Preparing to unpack .../dash_0.5.12-6ubuntu5_riscv64.deb ... Unpacking dash (0.5.12-6ubuntu5) over (0.5.12-6ubuntu1) ... Setting up dash (0.5.12-6ubuntu5) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.10-1build1_riscv64.deb ... Unpacking diffutils (1:3.10-1build1) over (1:3.8-4) ... Setting up diffutils (1:3.10-1build1) ... (Reading database ... 15671 files and directories currently installed.) Preparing to unpack .../findutils_4.9.0-5build1_riscv64.deb ... Unpacking findutils (4.9.0-5build1) over (4.9.0-5) ... Setting up findutils (4.9.0-5build1) ... (Reading database ... 15670 files and directories currently installed.) Preparing to unpack .../grep_3.11-4build1_riscv64.deb ... Unpacking grep (3.11-4build1) over (3.11-2) ... Setting up grep (3.11-4build1) ... (Reading database ... 15670 files and directories currently installed.) Preparing to unpack .../gzip_1.12-1ubuntu3_riscv64.deb ... Unpacking gzip (1.12-1ubuntu3) over (1.12-1ubuntu1) ... dpkg: warning: old file '/bin/uncompress' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') dpkg: warning: old file '/bin/gunzip' is the same as several new files! (both '/usr/bin/gunzip' and '/usr/bin/uncompress') Setting up gzip (1.12-1ubuntu3) ... (Reading database ... 15670 files and directories currently installed.) Preparing to unpack .../hostname_3.23+nmu2ubuntu2_riscv64.deb ... Unpacking hostname (3.23+nmu2ubuntu2) over (3.23+nmu1ubuntu1) ... Setting up hostname (3.23+nmu2ubuntu2) ... (Reading database ... 15670 files and directories currently installed.) Preparing to unpack .../login_1%3a4.13+dfsg1-4ubuntu3_riscv64.deb ... Unpacking login (1:4.13+dfsg1-4ubuntu3) over (1:4.13+dfsg1-1ubuntu1) ... Setting up login (1:4.13+dfsg1-4ubuntu3) ... Installing new version of config file /etc/login.defs ... Installing new version of config file /etc/pam.d/login ... (Reading database ... 15670 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.4+20240113-1ubuntu2_riscv64.deb ... Unpacking ncurses-bin (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... Setting up ncurses-bin (6.4+20240113-1ubuntu2) ... (Reading database ... 15670 files and directories currently installed.) Preparing to unpack .../sed_4.9-2build1_riscv64.deb ... Unpacking sed (4.9-2build1) over (4.9-1) ... Setting up sed (4.9-2build1) ... (Reading database ... 15670 files and directories currently installed.) Preparing to unpack .../util-linux_2.39.3-9ubuntu6_riscv64.deb ... Unpacking util-linux (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... Setting up util-linux (2.39.3-9ubuntu6) ... (Reading database ... 15672 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.4+20240113-1ubuntu2_all.deb ... Unpacking ncurses-base (6.4+20240113-1ubuntu2) over (6.4+20230625-2) ... Setting up ncurses-base (6.4+20240113-1ubuntu2) ... (Reading database ... 15672 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.08-6ubuntu3_riscv64.deb ... Unpacking sysvinit-utils (3.08-6ubuntu3) over (3.07-1ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/lsb/init-functions.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/lsb': Directory not empty dpkg: warning: unable to delete old directory '/lib/init': Directory not empty Setting up sysvinit-utils (3.08-6ubuntu3) ... (Reading database ... 15670 files and directories currently installed.) Preparing to unpack .../logsave_1.47.0-2.4~exp1ubuntu4_riscv64.deb ... Unpacking logsave (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... dpkg: libext2fs2:riscv64: dependency problems, but removing anyway as you requested: e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). (Reading database ... 15670 files and directories currently installed.) Removing libext2fs2:riscv64 (1.47.0-2ubuntu1) ... Selecting previously unselected package libext2fs2t64:riscv64. (Reading database ... 15663 files and directories currently installed.) Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu4_riscv64.deb ... Adding 'diversion of /lib/riscv64-linux-gnu/libe2p.so.2 to /lib/riscv64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libe2p.so.2.3 to /lib/riscv64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libext2fs.so.2 to /lib/riscv64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Adding 'diversion of /lib/riscv64-linux-gnu/libext2fs.so.2.4 to /lib/riscv64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:riscv64 (1.47.0-2.4~exp1ubuntu4) ... Setting up libcom-err2:riscv64 (1.47.0-2.4~exp1ubuntu4) ... Setting up libext2fs2t64:riscv64 (1.47.0-2.4~exp1ubuntu4) ... (Reading database ... 15679 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu4_riscv64.deb ... Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... dpkg: warning: unable to delete old directory '/lib/udev/rules.d': Directory not empty dpkg: warning: unable to delete old directory '/lib/udev': Directory not empty Preparing to unpack .../optipng_0.7.8+ds-1build2_riscv64.deb ... Unpacking optipng (0.7.8+ds-1build2) over (0.7.7-2build1) ... (Reading database ... 15677 files and directories currently installed.) Removing libpng16-16:riscv64 (1.6.40-1) ... Selecting previously unselected package libpng16-16t64:riscv64. (Reading database ... 15667 files and directories currently installed.) Preparing to unpack .../libpng16-16t64_1.6.43-5build1_riscv64.deb ... Unpacking libpng16-16t64:riscv64 (1.6.43-5build1) ... Setting up libapparmor1:riscv64 (4.0.0-beta3-0ubuntu3) ... Setting up libargon2-1:riscv64 (0~20190702+dfsg-4build1) ... Setting up libdevmapper1.02.1:riscv64 (2:1.02.185-3ubuntu3) ... Setting up libjson-c5:riscv64 (0.17-1build1) ... Setting up libcryptsetup12:riscv64 (2:2.7.0-1ubuntu4) ... Setting up libfdisk1:riscv64 (2.39.3-9ubuntu6) ... Setting up libkmod2:riscv64 (31+20240202-2ubuntu6) ... Setting up libseccomp2:riscv64 (2.5.5-1ubuntu3) ... Setting up libsystemd-shared:riscv64 (255.4-1ubuntu7) ... Setting up systemd-dev (255.4-1ubuntu7) ... Setting up mount (2.39.3-9ubuntu6) ... Setting up systemd (255.4-1ubuntu7) ... Installing new version of config file /etc/systemd/journald.conf ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/pstore.conf ... Installing new version of config file /etc/systemd/sleep.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up systemd-sysv (255.4-1ubuntu7) ... (Reading database ... 15678 files and directories currently installed.) Preparing to unpack .../init_1.66ubuntu1_riscv64.deb ... Unpacking init (1.66ubuntu1) over (1.65.2ubuntu1) ... Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu6_riscv64.deb ... Unpacking libsmartcols1:riscv64 (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... Setting up libsmartcols1:riscv64 (2.39.3-9ubuntu6) ... (Reading database ... 15679 files and directories currently installed.) Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu6_riscv64.deb ... Unpacking uuid-runtime (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... dpkg: warning: unable to delete old directory '/lib/systemd/system': Directory not empty dpkg: warning: unable to delete old directory '/lib/systemd': Directory not empty Preparing to unpack .../libattr1_1%3a2.5.2-1build1_riscv64.deb ... Unpacking libattr1:riscv64 (1:2.5.2-1build1) over (1:2.5.1-4) ... Setting up libattr1:riscv64 (1:2.5.2-1build1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2build1_riscv64.deb ... Unpacking libmd0:riscv64 (1.1.0-2build1) over (1.1.0-1) ... Setting up libmd0:riscv64 (1.1.0-2build1) ... (Reading database ... 15677 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu5_all.deb ... Unpacking libpam-runtime (1.5.3-5ubuntu5) over (1.5.2-6ubuntu1) ... Setting up libpam-runtime (1.5.3-5ubuntu5) ... (Reading database ... 15676 files and directories currently installed.) Preparing to unpack .../libsemanage-common_3.5-1build5_all.deb ... Unpacking libsemanage-common (3.5-1build5) over (3.5-1) ... Setting up libsemanage-common (3.5-1build5) ... (Reading database ... 15676 files and directories currently installed.) Preparing to unpack .../libsepol2_3.5-2build1_riscv64.deb ... Unpacking libsepol2:riscv64 (3.5-2build1) over (3.5-1) ... Setting up libsepol2:riscv64 (3.5-2build1) ... (Reading database ... 15676 files and directories currently installed.) Preparing to unpack .../libsemanage2_3.5-1build5_riscv64.deb ... Unpacking libsemanage2:riscv64 (3.5-1build5) over (3.5-1) ... Setting up libsemanage2:riscv64 (3.5-1build5) ... (Reading database ... 15676 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.13+dfsg1-4ubuntu3_riscv64.deb ... Unpacking passwd (1:4.13+dfsg1-4ubuntu3) over (1:4.13+dfsg1-1ubuntu1) ... Setting up passwd (1:4.13+dfsg1-4ubuntu3) ... (Reading database ... 15676 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4ubuntu3_riscv64.deb ... Unpacking libproc2-0:riscv64 (2:4.0.4-4ubuntu3) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu4_riscv64.deb ... Unpacking libss2:riscv64 (1.47.0-2.4~exp1ubuntu4) over (1.47.0-2ubuntu1) ... Preparing to unpack .../02-mawk_1.3.4.20240123-1build1_riscv64.deb ... Unpacking mawk (1.3.4.20240123-1build1) over (1.3.4.20230730-1) ... Preparing to unpack .../03-procps_2%3a4.0.4-4ubuntu3_riscv64.deb ... Unpacking procps (2:4.0.4-4ubuntu3) over (2:4.0.3-1ubuntu1) ... Preparing to unpack .../04-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) over (0.0.20) ... Preparing to unpack .../05-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) over (20230311ubuntu1) ... Preparing to unpack .../06-krb5-locales_1.20.1-6ubuntu2_all.deb ... Unpacking krb5-locales (1.20.1-6ubuntu2) over (1.20.1-3ubuntu1) ... Preparing to unpack .../07-tzdata_2024a-2ubuntu1_all.deb ... Unpacking tzdata (2024a-2ubuntu1) over (2023c-9ubuntu1) ... Preparing to unpack .../08-bash-completion_1%3a2.11-8_all.deb ... Unpacking bash-completion (1:2.11-8) over (1:2.11-7) ... Preparing to unpack .../09-bsdextrautils_2.39.3-9ubuntu6_riscv64.deb ... Unpacking bsdextrautils (2.39.3-9ubuntu6) over (2.39.1-4ubuntu2) ... Preparing to unpack .../10-libgpm2_1.20.7-11_riscv64.deb ... Unpacking libgpm2:riscv64 (1.20.7-11) over (1.20.7-10build1) ... Preparing to unpack .../11-libip4tc2_1.8.10-3ubuntu2_riscv64.deb ... Unpacking libip4tc2:riscv64 (1.8.10-3ubuntu2) over (1.8.9-2ubuntu2) ... Preparing to unpack .../12-libjansson4_2.14-2build2_riscv64.deb ... Unpacking libjansson4:riscv64 (2.14-2build2) over (2.14-2) ... Preparing to unpack .../13-psmisc_23.7-1build1_riscv64.deb ... Unpacking psmisc (23.7-1build1) over (23.6-1) ... Preparing to unpack .../14-xz-utils_5.6.1+really5.4.5-1_riscv64.deb ... Unpacking xz-utils (5.6.1+really5.4.5-1) over (5.4.1-0.2) ... Preparing to unpack .../15-advancecomp_2.5-1build1_riscv64.deb ... Unpacking advancecomp (2.5-1build1) over (2.5-1) ... Preparing to unpack .../16-libctf0_2.42-4ubuntu2_riscv64.deb ... Unpacking libctf0:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../17-libctf-nobfd0_2.42-4ubuntu2_riscv64.deb ... Unpacking libctf-nobfd0:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../18-binutils-riscv64-linux-gnu_2.42-4ubuntu2_riscv64.deb ... Unpacking binutils-riscv64-linux-gnu (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../19-libbinutils_2.42-4ubuntu2_riscv64.deb ... Unpacking libbinutils:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../20-binutils_2.42-4ubuntu2_riscv64.deb ... Unpacking binutils (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../21-binutils-common_2.42-4ubuntu2_riscv64.deb ... Unpacking binutils-common:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../22-libsframe1_2.42-4ubuntu2_riscv64.deb ... Unpacking libsframe1:riscv64 (2.42-4ubuntu2) over (2.41-5ubuntu1) ... Preparing to unpack .../23-libgomp1_14-20240330-1ubuntu2_riscv64.deb ... Unpacking libgomp1:riscv64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../24-libatomic1_14-20240330-1ubuntu2_riscv64.deb ... Unpacking libatomic1:riscv64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../25-libasan8_14-20240330-1ubuntu2_riscv64.deb ... Unpacking libasan8:riscv64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Selecting previously unselected package libubsan1:riscv64. Preparing to unpack .../26-libubsan1_14-20240330-1ubuntu2_riscv64.deb ... Unpacking libubsan1:riscv64 (14-20240330-1ubuntu2) ... Preparing to unpack .../27-g++-13_13.2.0-23ubuntu3_riscv64.deb ... Unpacking g++-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../28-gcc-13_13.2.0-23ubuntu3_riscv64.deb ... Unpacking gcc-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../29-libstdc++-13-dev_13.2.0-23ubuntu3_riscv64.deb ... Unpacking libstdc++-13-dev:riscv64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../30-libgcc-13-dev_13.2.0-23ubuntu3_riscv64.deb ... Unpacking libgcc-13-dev:riscv64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../31-libcc1-0_14-20240330-1ubuntu2_riscv64.deb ... Unpacking libcc1-0:riscv64 (14-20240330-1ubuntu2) over (13.2.0-4ubuntu3) ... Preparing to unpack .../32-cpp-13_13.2.0-23ubuntu3_riscv64.deb ... Unpacking cpp-13 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../33-gcc-13-base_13.2.0-23ubuntu3_riscv64.deb ... Unpacking gcc-13-base:riscv64 (13.2.0-23ubuntu3) over (13.2.0-4ubuntu3) ... Preparing to unpack .../34-libisl23_0.26-3build1_riscv64.deb ... Unpacking libisl23:riscv64 (0.26-3build1) over (0.26-3) ... Preparing to unpack .../35-libmpfr6_4.2.1-1build1_riscv64.deb ... Unpacking libmpfr6:riscv64 (4.2.1-1build1) over (4.2.1-1) ... Preparing to unpack .../36-libmpc3_1.3.1-1build1_riscv64.deb ... Unpacking libmpc3:riscv64 (1.3.1-1build1) over (1.3.1-1) ... Selecting previously unselected package gcc-13-riscv64-linux-gnu. Preparing to unpack .../37-gcc-13-riscv64-linux-gnu_13.2.0-23ubuntu3_riscv64.deb ... Unpacking gcc-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Selecting previously unselected package g++-13-riscv64-linux-gnu. Preparing to unpack .../38-g++-13-riscv64-linux-gnu_13.2.0-23ubuntu3_riscv64.deb ... Unpacking g++-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Selecting previously unselected package cpp-13-riscv64-linux-gnu. Preparing to unpack .../39-cpp-13-riscv64-linux-gnu_13.2.0-23ubuntu3_riscv64.deb ... Unpacking cpp-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Preparing to unpack .../40-g++_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking g++ (4:13.2.0-7ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../41-gcc_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking gcc (4:13.2.0-7ubuntu1) over (4:13.2.0-1ubuntu1) ... Preparing to unpack .../42-cpp_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking cpp (4:13.2.0-7ubuntu1) over (4:13.2.0-1ubuntu1) ... Selecting previously unselected package cpp-riscv64-linux-gnu. Preparing to unpack .../43-cpp-riscv64-linux-gnu_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking cpp-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Selecting previously unselected package gcc-riscv64-linux-gnu. Preparing to unpack .../44-gcc-riscv64-linux-gnu_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking gcc-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Selecting previously unselected package g++-riscv64-linux-gnu. Preparing to unpack .../45-g++-riscv64-linux-gnu_4%3a13.2.0-7ubuntu1_riscv64.deb ... Unpacking g++-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Preparing to unpack .../46-dpkg-dev_1.22.6ubuntu6_all.deb ... Unpacking dpkg-dev (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Preparing to unpack .../47-libdpkg-perl_1.22.6ubuntu6_all.deb ... Unpacking libdpkg-perl (1.22.6ubuntu6) over (1.22.0ubuntu1) ... Preparing to unpack .../48-patch_2.7.6-7build3_riscv64.deb ... Unpacking patch (2.7.6-7build3) over (2.7.6-7build2) ... Preparing to unpack .../49-make_4.3-4.1build2_riscv64.deb ... Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... Preparing to unpack .../50-lto-disabled-list_47_all.deb ... Unpacking lto-disabled-list (47) over (43) ... Preparing to unpack .../51-libfakeroot_1.33-1build1_riscv64.deb ... Unpacking libfakeroot:riscv64 (1.33-1build1) over (1.32.1-1) ... Preparing to unpack .../52-fakeroot_1.33-1build1_riscv64.deb ... Unpacking fakeroot (1.33-1build1) over (1.32.1-1) ... Preparing to unpack .../53-liblockfile-bin_1.17-1build3_riscv64.deb ... Unpacking liblockfile-bin (1.17-1build3) over (1.17-1build2) ... Preparing to unpack .../54-liblockfile1_1.17-1build3_riscv64.deb ... Unpacking liblockfile1:riscv64 (1.17-1build3) over (1.17-1build2) ... Preparing to unpack .../55-lockfile-progs_0.1.19build2_riscv64.deb ... Unpacking lockfile-progs (0.1.19build2) over (0.1.19build1) ... Setting up libip4tc2:riscv64 (1.8.10-3ubuntu2) ... Setting up libtext-iconv-perl:riscv64 (1.7-8build3) ... Setting up libtext-charwidth-perl:riscv64 (0.04-11build3) ... Setting up libkeyutils1:riscv64 (1.6.3-3build1) ... Setting up lto-disabled-list (47) ... Setting up libgpm2:riscv64 (1.20.7-11) ... Setting up liblockfile-bin (1.17-1build3) ... Setting up libgdbm6t64:riscv64 (1.23-5.1build1) ... Setting up bsdextrautils (2.39.3-9ubuntu6) ... Setting up init (1.66ubuntu1) ... Setting up libgdbm-compat4t64:riscv64 (1.23-5.1build1) ... Setting up psmisc (23.7-1build1) ... Setting up libtirpc-common (1.3.4+ds-1.1build1) ... Setting up libsqlite3-0:riscv64 (3.45.1-1ubuntu2) ... Setting up binutils-common:riscv64 (2.42-4ubuntu2) ... Setting up linux-libc-dev:riscv64 (6.8.0-22.22) ... Setting up libctf-nobfd0:riscv64 (2.42-4ubuntu2) ... Setting up krb5-locales (1.20.1-6ubuntu2) ... Setting up libgomp1:riscv64 (14-20240330-1ubuntu2) ... Setting up bzip2 (1.0.8-5.1) ... Setting up libsframe1:riscv64 (2.42-4ubuntu2) ... Setting up libfakeroot:riscv64 (1.33-1build1) ... Setting up libjansson4:riscv64 (2.14-2build2) ... Setting up libkrb5support0:riscv64 (1.20.1-6ubuntu2) ... Setting up tzdata (2024a-2ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Apr 14 17:12:30 UTC 2024. Universal Time is now: Sun Apr 14 17:12:30 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.33-1build1) ... Setting up rpcsvc-proto (1.4.2-0ubuntu7) ... Setting up gcc-13-base:riscv64 (13.2.0-23ubuntu3) ... Setting up make (4.3-4.1build2) ... Setting up libmpfr6:riscv64 (4.2.1-1build1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.6.1+really5.4.5-1) ... Setting up perl-modules-5.38 (5.38.2-3.2build2) ... Setting up libproc2-0:riscv64 (2:4.0.4-4ubuntu3) ... Setting up libpng16-16t64:riscv64 (1.6.43-5build1) ... Setting up libmpc3:riscv64 (1.3.1-1build1) ... Setting up libatomic1:riscv64 (14-20240330-1ubuntu2) ... Setting up patch (2.7.6-7build3) ... Setting up libss2:riscv64 (1.47.0-2.4~exp1ubuntu4) ... Setting up libncursesw6:riscv64 (6.4+20240113-1ubuntu2) ... Setting up libk5crypto3:riscv64 (1.20.1-6ubuntu2) ... Setting up logsave (1.47.0-2.4~exp1ubuntu4) ... Setting up libdb5.3t64:riscv64 (5.3.28+dfsg2-7) ... Setting up libubsan1:riscv64 (14-20240330-1ubuntu2) ... Setting up advancecomp (2.5-1build1) ... Setting up sensible-utils (0.0.22) ... Setting up uuid-runtime (2.39.3-9ubuntu6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libcrypt-dev:riscv64 (1:4.4.36-4build1) ... Setting up libasan8:riscv64 (14-20240330-1ubuntu2) ... Setting up procps (2:4.0.4-4ubuntu3) ... Installing new version of config file /etc/sysctl.conf ... Setting up mawk (1.3.4.20240123-1build1) ... Setting up libkrb5-3:riscv64 (1.20.1-6ubuntu2) ... Setting up liblockfile1:riscv64 (1.17-1build3) ... Setting up libperl5.38t64:riscv64 (5.38.2-3.2build2) ... Setting up libbinutils:riscv64 (2.42-4ubuntu2) ... Setting up libisl23:riscv64 (0.26-3build1) ... Setting up libc-dev-bin (2.39-0ubuntu8) ... Setting up openssl (3.0.13-0ubuntu3) ... Setting up libgpg-error-l10n (1.47-3build2) ... Setting up readline-common (8.2-4build1) ... Setting up libcc1-0:riscv64 (14-20240330-1ubuntu2) ... Setting up liblocale-gettext-perl (1.07-6ubuntu5) ... Setting up libctf0:riscv64 (2.42-4ubuntu2) ... Setting up pinentry-curses (1.2.1-3ubuntu5) ... Setting up apt-utils (2.7.14build2) ... Setting up cpp-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up binutils-riscv64-linux-gnu (2.42-4ubuntu2) ... Setting up debconf-i18n (1.5.86ubuntu1) ... Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu4) ... Setting up binutils (2.42-4ubuntu2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 14 added, 5 removed; done. Setting up perl (5.38.2-3.2build2) ... Setting up optipng (0.7.8+ds-1build2) ... Setting up lockfile-progs (0.1.19build2) ... Setting up libgssapi-krb5-2:riscv64 (1.20.1-6ubuntu2) ... Setting up libdpkg-perl (1.22.6ubuntu6) ... Setting up libreadline8t64:riscv64 (8.2-4build1) ... Setting up libgcc-13-dev:riscv64 (13.2.0-23ubuntu3) ... Setting up gpgconf (2.4.4-2ubuntu17) ... Setting up libc6-dev:riscv64 (2.39-0ubuntu8) ... Setting up cpp-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up gpg (2.4.4-2ubuntu17) ... Setting up libstdc++-13-dev:riscv64 (13.2.0-23ubuntu3) ... Setting up gpg-agent (2.4.4-2ubuntu17) ... Setting up cpp-13 (13.2.0-23ubuntu3) ... Setting up libtirpc3t64:riscv64 (1.3.4+ds-1.1build1) ... Setting up gcc-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up dpkg-dev (1.22.6ubuntu6) ... Setting up gcc-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up libtirpc-dev:riscv64 (1.3.4+ds-1.1build1) ... Setting up gcc-13 (13.2.0-23ubuntu3) ... Setting up cpp (4:13.2.0-7ubuntu1) ... Setting up libnsl2:riscv64 (1.3.0-3build3) ... Setting up g++-13-riscv64-linux-gnu (13.2.0-23ubuntu3) ... Setting up g++-13 (13.2.0-23ubuntu3) ... Setting up libnss-nisplus:riscv64 (1.3-5build1) ... Setting up gcc (4:13.2.0-7ubuntu1) ... Setting up g++-riscv64-linux-gnu (4:13.2.0-7ubuntu1) ... Setting up g++ (4:13.2.0-7ubuntu1) ... Setting up libnsl-dev:riscv64 (1.3.0-3build3) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... Processing triggers for debianutils (5.17build1) ... (Reading database ... 15729 files and directories currently installed.) Purging configuration files for libssl3:riscv64 (3.0.10-1ubuntu2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-28055381 riscv64 noble-proposed -c chroot:build-PACKAGEBUILD-28055381 --arch=riscv64 --dist=noble-proposed --nolog blasr_5.3.5+dfsg-6build5.dsc Initiating build PACKAGEBUILD-28055381 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 sbuild (Debian sbuild) 0.81.2ubuntu6 (16 February 2022) on bos03-riscv64-031.buildd +==============================================================================+ | blasr 5.3.5+dfsg-6build5 (riscv64) Sun, 14 Apr 2024 17:14:33 +0000 | +==============================================================================+ Package: blasr Version: 5.3.5+dfsg-6build5 Source Version: 5.3.5+dfsg-6build5 Distribution: noble-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-28055381/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/blasr-AkETJM/resolver-xeOC9a' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- blasr_5.3.5+dfsg-6build5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/blasr-AkETJM/blasr-5.3.5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/blasr-AkETJM' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-4~), build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-4~), build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [458 B] Get:5 copy:/<>/apt_archive ./ Packages [549 B] Fetched 1964 B in 0s (5974 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnsl-dev libnsl2 libnss-nis libnss-nisplus libperl5.36 libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libtirpc-common libtirpc-dev libtirpc3t64 libunistring2 openssl perl-modules-5.36 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13t64 libblasr-dev libblasr5.3.5 libboost-dev libboost1.83-dev libbrotli1 libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgtest-dev libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhts-dev libhts3t64 libhtscodecs2 libicu74 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp25 libldap2 liblzma-dev libmagic-mgc libmagic1t64 libnghttp2-14 libpbbam-dev libpbbam2.4.0 libpbcopper-dev libpbcopper2.3.0 libpbdata-dev libpbihdf-dev libpbseq-dev libpipeline1 libpkgconf3 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtool libuchardet0 libuv1t64 libxml2 m4 man-db media-types meson netbase ninja-build pkg-config pkgconf pkgconf-bin po-debconf python3 python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc libboost1.83-doc libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev libboost-numpy1.83-dev libboost-program-options1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libhdf5-doc liblzma-doc libssl-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-setuptools-doc python3.12-venv python3.12-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base googletest groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13t64 libblasr-dev libblasr5.3.5 libboost-dev libboost1.83-dev libbrotli1 libcurl3t64-gnutls libcurl4-gnutls-dev libcurl4t64 libdebhelper-perl libdeflate-dev libdeflate0 libdw1t64 libelf1t64 libexpat1 libfile-stripnondeterminism-perl libgfortran5 libgtest-dev libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhts-dev libhts3t64 libhtscodecs2 libicu74 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjsoncpp25 libldap2 liblzma-dev libmagic-mgc libmagic1t64 libnghttp2-14 libpbbam-dev libpbbam2.4.0 libpbcopper-dev libpbcopper2.3.0 libpbdata-dev libpbihdf-dev libpbseq-dev libpipeline1 libpkgconf3 libpsl5t64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libssh-4 libssl-dev libsub-override-perl libsz2 libtool libuchardet0 libuv1t64 libxml2 m4 man-db media-types meson netbase ninja-build pkg-config pkgconf pkgconf-bin po-debconf python3 python3-minimal python3-pkg-resources python3-setuptools python3.12 python3.12-minimal sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 89.2 MB of archives. After this operation, 552 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [756 B] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3.12-minimal riscv64 3.12.3-1 [829 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main riscv64 libexpat1 riscv64 2.6.1-2build1 [86.0 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3.12-minimal riscv64 3.12.3-1 [2343 kB] Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3-minimal riscv64 3.12.3-0ubuntu1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main riscv64 media-types all 10.1.0 [27.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main riscv64 netbase all 6.4 [13.1 kB] Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3.12-stdlib riscv64 3.12.3-1 [2024 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3.12 riscv64 3.12.3-1 [651 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpython3-stdlib riscv64 3.12.3-0ubuntu1 [9896 B] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 python3 riscv64 3.12.3-0ubuntu1 [24.1 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main riscv64 libelf1t64 riscv64 0.190-1.1build4 [63.5 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libicu74 riscv64 74.2-1ubuntu3 [10.9 MB] Get:14 http://ftpmaster.internal/ubuntu noble/main riscv64 libxml2 riscv64 2.9.14+dfsg-1.3ubuntu3 [719 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main riscv64 libmagic-mgc riscv64 1:5.45-3build1 [307 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main riscv64 libmagic1t64 riscv64 1:5.45-3build1 [96.4 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main riscv64 file riscv64 1:5.45-3build1 [21.9 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gettext-base riscv64 0.21-14ubuntu2 [42.6 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libuchardet0 riscv64 0.0.8-1build1 [77.8 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main riscv64 groff-base riscv64 1.23.0-3build2 [1031 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main riscv64 libnghttp2-14 riscv64 1.59.0-1build2 [85.5 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main riscv64 libpipeline1 riscv64 1.5.7-2 [30.9 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main riscv64 libpsl5t64 riscv64 0.21.2-1.1build1 [57.9 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main riscv64 libuv1t64 riscv64 1.48.0-1.1build1 [102 kB] Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 man-db riscv64 2.12.0-4build2 [1226 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 m4 riscv64 1.4.19-4build1 [264 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main riscv64 autoconf all 2.71-3 [339 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main riscv64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 autopoint all 0.21-14ubuntu2 [422 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main riscv64 libarchive13t64 riscv64 3.7.2-2 [398 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main riscv64 libbrotli1 riscv64 1.1.0-2build2 [389 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-5ubuntu3 [22.2 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-5ubuntu3 [62.3 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main riscv64 libldap2 riscv64 2.6.7+dfsg-1~exp1ubuntu8 [207 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build7 [58.8 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main riscv64 libssh-4 riscv64 0.10.6-2build2 [202 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl4t64 riscv64 8.5.0-2ubuntu10 [356 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main riscv64 libjsoncpp25 riscv64 1.9.5-6build1 [85.9 kB] Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 librhash0 riscv64 1.4.3-3build1 [148 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main riscv64 cmake-data all 3.28.3-1build6 [2155 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main riscv64 cmake riscv64 3.28.3-1build6 [11.2 MB] Get:44 http://ftpmaster.internal/ubuntu noble/main riscv64 libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libtool all 2.4.7-7build1 [166 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main riscv64 libsub-override-perl all 0.10-1 [10.0 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main riscv64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main riscv64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:51 http://ftpmaster.internal/ubuntu noble/main riscv64 libdw1t64 riscv64 0.190-1.1build4 [275 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main riscv64 debugedit riscv64 1:5.0-5build2 [49.2 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main riscv64 dwz riscv64 0.15-1build6 [125 kB] Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 gettext riscv64 0.21-14ubuntu2 [875 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main riscv64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main riscv64 debhelper all 13.14.1ubuntu5 [869 kB] Get:58 http://ftpmaster.internal/ubuntu noble/universe riscv64 googletest all 1.14.0-1 [521 kB] Get:59 http://ftpmaster.internal/ubuntu noble/universe riscv64 hdf5-helpers riscv64 1.10.10+repack-3.1ubuntu4 [15.8 kB] Get:60 http://ftpmaster.internal/ubuntu noble/universe riscv64 libaec0 riscv64 1.1.2-1 [23.3 kB] Get:61 http://ftpmaster.internal/ubuntu noble/universe riscv64 libsz2 riscv64 1.1.2-1 [5068 B] Get:62 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-103-1t64 riscv64 1.10.10+repack-3.1ubuntu4 [1406 kB] Get:63 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-cpp-103-1t64 riscv64 1.10.10+repack-3.1ubuntu4 [128 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl3t64-gnutls riscv64 8.5.0-2ubuntu10 [347 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdeflate0 riscv64 1.19-1build1 [40.1 kB] Get:66 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhtscodecs2 riscv64 1.6.0-1 [84.5 kB] Get:67 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhts3t64 riscv64 1.19+ds-1.1build3 [463 kB] Get:68 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpbcopper2.3.0 riscv64 2.3.0+dfsg-2 [773 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpbbam2.4.0 riscv64 2.4.0+dfsg-1build1 [872 kB] Get:70 http://ftpmaster.internal/ubuntu noble/universe riscv64 libblasr5.3.5 riscv64 5.3.5+dfsg-6build5 [1306 kB] Get:71 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpbcopper-dev riscv64 2.3.0+dfsg-2 [4842 kB] Get:72 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpbdata-dev riscv64 5.3.5+dfsg-6build5 [41.3 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main riscv64 libgfortran5 riscv64 14-20240330-1ubuntu2 [468 kB] Get:74 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-fortran-102t64 riscv64 1.10.10+repack-3.1ubuntu4 [88.3 kB] Get:75 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-hl-100t64 riscv64 1.10.10+repack-3.1ubuntu4 [60.7 kB] Get:76 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-hl-fortran-100t64 riscv64 1.10.10+repack-3.1ubuntu4 [32.8 kB] Get:77 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-hl-cpp-100t64 riscv64 1.10.10+repack-3.1ubuntu4 [11.1 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg-3.1ubuntu2 [968 kB] Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libjpeg-turbo8 riscv64 2.1.5-2ubuntu2 [137 kB] Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libjpeg-turbo8-dev riscv64 2.1.5-2ubuntu2 [470 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8 riscv64 8c-2ubuntu11 [2150 B] Get:82 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu11 [1486 B] Get:83 http://ftpmaster.internal/ubuntu noble/main riscv64 libjpeg-dev riscv64 8c-2ubuntu11 [1484 B] Get:84 http://ftpmaster.internal/ubuntu noble/universe riscv64 libaec-dev riscv64 1.1.2-1 [46.2 kB] Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libcurl4-gnutls-dev riscv64 8.5.0-2ubuntu10 [1097 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main riscv64 libssl-dev riscv64 3.0.13-0ubuntu3 [5178 kB] Get:87 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhdf5-dev riscv64 1.10.10+repack-3.1ubuntu4 [6906 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libdeflate-dev riscv64 1.19-1build1 [90.3 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main riscv64 liblzma-dev riscv64 5.6.1+really5.4.5-1 [343 kB] Get:90 http://ftpmaster.internal/ubuntu noble/universe riscv64 libhts-dev riscv64 1.19+ds-1.1build3 [3948 kB] Get:91 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpbbam-dev riscv64 2.4.0+dfsg-1build1 [77.4 kB] Get:92 http://ftpmaster.internal/ubuntu noble/universe riscv64 libblasr-dev riscv64 5.3.5+dfsg-6build5 [4857 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main riscv64 libboost1.83-dev riscv64 1.83.0-2.1ubuntu3 [10.7 MB] Get:94 http://ftpmaster.internal/ubuntu noble/main riscv64 libboost-dev riscv64 1.83.0.1ubuntu2 [4312 B] Get:95 http://ftpmaster.internal/ubuntu noble/universe riscv64 libgtest-dev riscv64 1.14.0-1 [734 kB] Get:96 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpbihdf-dev riscv64 5.3.5+dfsg-6build5 [48.0 kB] Get:97 http://ftpmaster.internal/ubuntu noble/universe riscv64 libpbseq-dev riscv64 5.3.5+dfsg-6build5 [3084 B] Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 libpkgconf3 riscv64 1.8.1-2build1 [31.5 kB] Get:99 http://ftpmaster.internal/ubuntu noble/universe riscv64 ninja-build riscv64 1.11.1-2 [149 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main riscv64 python3-setuptools all 68.1.2-2ubuntu1 [396 kB] Get:101 http://ftpmaster.internal/ubuntu noble/universe riscv64 meson all 1.3.2-1ubuntu1 [604 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 pkgconf-bin riscv64 1.8.1-2build1 [21.5 kB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 pkgconf riscv64 1.8.1-2build1 [16.8 kB] Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main riscv64 pkg-config riscv64 1.8.1-2build1 [7264 B] Preconfiguring packages ... Fetched 89.2 MB in 11s (7838 kB/s) Selecting previously unselected package libpython3.12-minimal:riscv64. (Reading database ... 15729 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.3-1_riscv64.deb ... Unpacking libpython3.12-minimal:riscv64 (3.12.3-1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.6.1-2build1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.6.1-2build1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.3-1_riscv64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Setting up libpython3.12-minimal:riscv64 (3.12.3-1) ... Setting up libexpat1:riscv64 (2.6.1-2build1) ... Setting up python3.12-minimal (3.12.3-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 16047 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.3-0ubuntu1_riscv64.deb ... Unpacking python3-minimal (3.12.3-0ubuntu1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libpython3.12-stdlib:riscv64. Preparing to unpack .../3-libpython3.12-stdlib_3.12.3-1_riscv64.deb ... Unpacking libpython3.12-stdlib:riscv64 (3.12.3-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../4-python3.12_3.12.3-1_riscv64.deb ... Unpacking python3.12 (3.12.3-1) ... Selecting previously unselected package libpython3-stdlib:riscv64. Preparing to unpack .../5-libpython3-stdlib_3.12.3-0ubuntu1_riscv64.deb ... Unpacking libpython3-stdlib:riscv64 (3.12.3-0ubuntu1) ... Setting up python3-minimal (3.12.3-0ubuntu1) ... Selecting previously unselected package python3. (Reading database ... 16488 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.3-0ubuntu1_riscv64.deb ... Unpacking python3 (3.12.3-0ubuntu1) ... Selecting previously unselected package libelf1t64:riscv64. Preparing to unpack .../01-libelf1t64_0.190-1.1build4_riscv64.deb ... Unpacking libelf1t64:riscv64 (0.190-1.1build4) ... Selecting previously unselected package libicu74:riscv64. Preparing to unpack .../02-libicu74_74.2-1ubuntu3_riscv64.deb ... Unpacking libicu74:riscv64 (74.2-1ubuntu3) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.3ubuntu3_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.14+dfsg-1.3ubuntu3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../04-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... Unpacking python3-pkg-resources (68.1.2-2ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.45-3build1_riscv64.deb ... Unpacking libmagic-mgc (1:5.45-3build1) ... Selecting previously unselected package libmagic1t64:riscv64. Preparing to unpack .../06-libmagic1t64_1%3a5.45-3build1_riscv64.deb ... Unpacking libmagic1t64:riscv64 (1:5.45-3build1) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.45-3build1_riscv64.deb ... Unpacking file (1:5.45-3build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.21-14ubuntu2_riscv64.deb ... Unpacking gettext-base (0.21-14ubuntu2) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../09-libuchardet0_0.0.8-1build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.8-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-3build2_riscv64.deb ... Unpacking groff-base (1.23.0-3build2) ... Selecting previously unselected package libnghttp2-14:riscv64. Preparing to unpack .../11-libnghttp2-14_1.59.0-1build2_riscv64.deb ... Unpacking libnghttp2-14:riscv64 (1.59.0-1build2) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../12-libpipeline1_1.5.7-2_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.7-2) ... Selecting previously unselected package libpsl5t64:riscv64. Preparing to unpack .../13-libpsl5t64_0.21.2-1.1build1_riscv64.deb ... Unpacking libpsl5t64:riscv64 (0.21.2-1.1build1) ... Selecting previously unselected package libuv1t64:riscv64. Preparing to unpack .../14-libuv1t64_1.48.0-1.1build1_riscv64.deb ... Unpacking libuv1t64:riscv64 (1.48.0-1.1build1) ... Selecting previously unselected package man-db. Preparing to unpack .../15-man-db_2.12.0-4build2_riscv64.deb ... Unpacking man-db (2.12.0-4build2) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.19-4build1_riscv64.deb ... Unpacking m4 (1.4.19-4build1) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... Unpacking automake (1:1.16.5-1.3ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.21-14ubuntu2_all.deb ... Unpacking autopoint (0.21-14ubuntu2) ... Selecting previously unselected package libarchive13t64:riscv64. Preparing to unpack .../21-libarchive13t64_3.7.2-2_riscv64.deb ... Unpacking libarchive13t64:riscv64 (3.7.2-2) ... Selecting previously unselected package libbrotli1:riscv64. Preparing to unpack .../22-libbrotli1_1.1.0-2build2_riscv64.deb ... Unpacking libbrotli1:riscv64 (1.1.0-2build2) ... Selecting previously unselected package libsasl2-modules-db:riscv64. Preparing to unpack .../23-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_riscv64.deb ... Unpacking libsasl2-modules-db:riscv64 (2.1.28+dfsg1-5ubuntu3) ... Selecting previously unselected package libsasl2-2:riscv64. Preparing to unpack .../24-libsasl2-2_2.1.28+dfsg1-5ubuntu3_riscv64.deb ... Unpacking libsasl2-2:riscv64 (2.1.28+dfsg1-5ubuntu3) ... Selecting previously unselected package libldap2:riscv64. Preparing to unpack .../25-libldap2_2.6.7+dfsg-1~exp1ubuntu8_riscv64.deb ... Unpacking libldap2:riscv64 (2.6.7+dfsg-1~exp1ubuntu8) ... Selecting previously unselected package librtmp1:riscv64. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2build7_riscv64.deb ... Unpacking librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build7) ... Selecting previously unselected package libssh-4:riscv64. Preparing to unpack .../27-libssh-4_0.10.6-2build2_riscv64.deb ... Unpacking libssh-4:riscv64 (0.10.6-2build2) ... Selecting previously unselected package libcurl4t64:riscv64. Preparing to unpack .../28-libcurl4t64_8.5.0-2ubuntu10_riscv64.deb ... Unpacking libcurl4t64:riscv64 (8.5.0-2ubuntu10) ... Selecting previously unselected package libjsoncpp25:riscv64. Preparing to unpack .../29-libjsoncpp25_1.9.5-6build1_riscv64.deb ... Unpacking libjsoncpp25:riscv64 (1.9.5-6build1) ... Selecting previously unselected package librhash0:riscv64. Preparing to unpack .../30-librhash0_1.4.3-3build1_riscv64.deb ... Unpacking librhash0:riscv64 (1.4.3-3build1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../31-cmake-data_3.28.3-1build6_all.deb ... Unpacking cmake-data (3.28.3-1build6) ... Selecting previously unselected package cmake. Preparing to unpack .../32-cmake_3.28.3-1build6_riscv64.deb ... Unpacking cmake (3.28.3-1build6) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../33-libdebhelper-perl_13.14.1ubuntu5_all.deb ... Unpacking libdebhelper-perl (13.14.1ubuntu5) ... Selecting previously unselected package libtool. Preparing to unpack .../34-libtool_2.4.7-7build1_all.deb ... Unpacking libtool (2.4.7-7build1) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../35-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../36-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../37-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../38-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../39-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libdw1t64:riscv64. Preparing to unpack .../40-libdw1t64_0.190-1.1build4_riscv64.deb ... Unpacking libdw1t64:riscv64 (0.190-1.1build4) ... Selecting previously unselected package debugedit. Preparing to unpack .../41-debugedit_1%3a5.0-5build2_riscv64.deb ... Unpacking debugedit (1:5.0-5build2) ... Selecting previously unselected package dwz. Preparing to unpack .../42-dwz_0.15-1build6_riscv64.deb ... Unpacking dwz (0.15-1build6) ... Selecting previously unselected package gettext. Preparing to unpack .../43-gettext_0.21-14ubuntu2_riscv64.deb ... Unpacking gettext (0.21-14ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../44-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../45-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../46-debhelper_13.14.1ubuntu5_all.deb ... Unpacking debhelper (13.14.1ubuntu5) ... Selecting previously unselected package googletest. Preparing to unpack .../47-googletest_1.14.0-1_all.deb ... Unpacking googletest (1.14.0-1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../48-hdf5-helpers_1.10.10+repack-3.1ubuntu4_riscv64.deb ... Unpacking hdf5-helpers (1.10.10+repack-3.1ubuntu4) ... Selecting previously unselected package libaec0:riscv64. Preparing to unpack .../49-libaec0_1.1.2-1_riscv64.deb ... Unpacking libaec0:riscv64 (1.1.2-1) ... Selecting previously unselected package libsz2:riscv64. Preparing to unpack .../50-libsz2_1.1.2-1_riscv64.deb ... Unpacking libsz2:riscv64 (1.1.2-1) ... Selecting previously unselected package libhdf5-103-1t64:riscv64. Preparing to unpack .../51-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_riscv64.deb ... Unpacking libhdf5-103-1t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Selecting previously unselected package libhdf5-cpp-103-1t64:riscv64. Preparing to unpack .../52-libhdf5-cpp-103-1t64_1.10.10+repack-3.1ubuntu4_riscv64.deb ... Unpacking libhdf5-cpp-103-1t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Selecting previously unselected package libcurl3t64-gnutls:riscv64. Preparing to unpack .../53-libcurl3t64-gnutls_8.5.0-2ubuntu10_riscv64.deb ... Unpacking libcurl3t64-gnutls:riscv64 (8.5.0-2ubuntu10) ... Selecting previously unselected package libdeflate0:riscv64. Preparing to unpack .../54-libdeflate0_1.19-1build1_riscv64.deb ... Unpacking libdeflate0:riscv64 (1.19-1build1) ... Selecting previously unselected package libhtscodecs2:riscv64. Preparing to unpack .../55-libhtscodecs2_1.6.0-1_riscv64.deb ... Unpacking libhtscodecs2:riscv64 (1.6.0-1) ... Selecting previously unselected package libhts3t64:riscv64. Preparing to unpack .../56-libhts3t64_1.19+ds-1.1build3_riscv64.deb ... Unpacking libhts3t64:riscv64 (1.19+ds-1.1build3) ... Selecting previously unselected package libpbcopper2.3.0:riscv64. Preparing to unpack .../57-libpbcopper2.3.0_2.3.0+dfsg-2_riscv64.deb ... Unpacking libpbcopper2.3.0:riscv64 (2.3.0+dfsg-2) ... Selecting previously unselected package libpbbam2.4.0:riscv64. Preparing to unpack .../58-libpbbam2.4.0_2.4.0+dfsg-1build1_riscv64.deb ... Unpacking libpbbam2.4.0:riscv64 (2.4.0+dfsg-1build1) ... Selecting previously unselected package libblasr5.3.5:riscv64. Preparing to unpack .../59-libblasr5.3.5_5.3.5+dfsg-6build5_riscv64.deb ... Unpacking libblasr5.3.5:riscv64 (5.3.5+dfsg-6build5) ... Selecting previously unselected package libpbcopper-dev:riscv64. Preparing to unpack .../60-libpbcopper-dev_2.3.0+dfsg-2_riscv64.deb ... Unpacking libpbcopper-dev:riscv64 (2.3.0+dfsg-2) ... Selecting previously unselected package libpbdata-dev:riscv64. Preparing to unpack .../61-libpbdata-dev_5.3.5+dfsg-6build5_riscv64.deb ... Unpacking libpbdata-dev:riscv64 (5.3.5+dfsg-6build5) ... Selecting previously unselected package libgfortran5:riscv64. Preparing to unpack .../62-libgfortran5_14-20240330-1ubuntu2_riscv64.deb ... Unpacking libgfortran5:riscv64 (14-20240330-1ubuntu2) ... Selecting previously unselected package libhdf5-fortran-102t64:riscv64. Preparing to unpack .../63-libhdf5-fortran-102t64_1.10.10+repack-3.1ubuntu4_riscv64.deb ... Unpacking libhdf5-fortran-102t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Selecting previously unselected package libhdf5-hl-100t64:riscv64. Preparing to unpack .../64-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_riscv64.deb ... Unpacking libhdf5-hl-100t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Selecting previously unselected package libhdf5-hl-fortran-100t64:riscv64. Preparing to unpack .../65-libhdf5-hl-fortran-100t64_1.10.10+repack-3.1ubuntu4_riscv64.deb ... Unpacking libhdf5-hl-fortran-100t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Selecting previously unselected package libhdf5-hl-cpp-100t64:riscv64. Preparing to unpack .../66-libhdf5-hl-cpp-100t64_1.10.10+repack-3.1ubuntu4_riscv64.deb ... Unpacking libhdf5-hl-cpp-100t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Selecting previously unselected package zlib1g-dev:riscv64. Preparing to unpack .../67-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_riscv64.deb ... Unpacking zlib1g-dev:riscv64 (1:1.3.dfsg-3.1ubuntu2) ... Selecting previously unselected package libjpeg-turbo8:riscv64. Preparing to unpack .../68-libjpeg-turbo8_2.1.5-2ubuntu2_riscv64.deb ... Unpacking libjpeg-turbo8:riscv64 (2.1.5-2ubuntu2) ... Selecting previously unselected package libjpeg-turbo8-dev:riscv64. Preparing to unpack .../69-libjpeg-turbo8-dev_2.1.5-2ubuntu2_riscv64.deb ... Unpacking libjpeg-turbo8-dev:riscv64 (2.1.5-2ubuntu2) ... Selecting previously unselected package libjpeg8:riscv64. Preparing to unpack .../70-libjpeg8_8c-2ubuntu11_riscv64.deb ... Unpacking libjpeg8:riscv64 (8c-2ubuntu11) ... Selecting previously unselected package libjpeg8-dev:riscv64. Preparing to unpack .../71-libjpeg8-dev_8c-2ubuntu11_riscv64.deb ... Unpacking libjpeg8-dev:riscv64 (8c-2ubuntu11) ... Selecting previously unselected package libjpeg-dev:riscv64. Preparing to unpack .../72-libjpeg-dev_8c-2ubuntu11_riscv64.deb ... Unpacking libjpeg-dev:riscv64 (8c-2ubuntu11) ... Selecting previously unselected package libaec-dev:riscv64. Preparing to unpack .../73-libaec-dev_1.1.2-1_riscv64.deb ... Unpacking libaec-dev:riscv64 (1.1.2-1) ... Selecting previously unselected package libcurl4-gnutls-dev:riscv64. Preparing to unpack .../74-libcurl4-gnutls-dev_8.5.0-2ubuntu10_riscv64.deb ... Unpacking libcurl4-gnutls-dev:riscv64 (8.5.0-2ubuntu10) ... Selecting previously unselected package libssl-dev:riscv64. Preparing to unpack .../75-libssl-dev_3.0.13-0ubuntu3_riscv64.deb ... Unpacking libssl-dev:riscv64 (3.0.13-0ubuntu3) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../76-libhdf5-dev_1.10.10+repack-3.1ubuntu4_riscv64.deb ... Unpacking libhdf5-dev (1.10.10+repack-3.1ubuntu4) ... Selecting previously unselected package libdeflate-dev:riscv64. Preparing to unpack .../77-libdeflate-dev_1.19-1build1_riscv64.deb ... Unpacking libdeflate-dev:riscv64 (1.19-1build1) ... Selecting previously unselected package liblzma-dev:riscv64. Preparing to unpack .../78-liblzma-dev_5.6.1+really5.4.5-1_riscv64.deb ... Unpacking liblzma-dev:riscv64 (5.6.1+really5.4.5-1) ... Selecting previously unselected package libhts-dev:riscv64. Preparing to unpack .../79-libhts-dev_1.19+ds-1.1build3_riscv64.deb ... Unpacking libhts-dev:riscv64 (1.19+ds-1.1build3) ... Selecting previously unselected package libpbbam-dev:riscv64. Preparing to unpack .../80-libpbbam-dev_2.4.0+dfsg-1build1_riscv64.deb ... Unpacking libpbbam-dev:riscv64 (2.4.0+dfsg-1build1) ... Selecting previously unselected package libblasr-dev:riscv64. Preparing to unpack .../81-libblasr-dev_5.3.5+dfsg-6build5_riscv64.deb ... Unpacking libblasr-dev:riscv64 (5.3.5+dfsg-6build5) ... Selecting previously unselected package libboost1.83-dev:riscv64. Preparing to unpack .../82-libboost1.83-dev_1.83.0-2.1ubuntu3_riscv64.deb ... Unpacking libboost1.83-dev:riscv64 (1.83.0-2.1ubuntu3) ... Selecting previously unselected package libboost-dev:riscv64. Preparing to unpack .../83-libboost-dev_1.83.0.1ubuntu2_riscv64.deb ... Unpacking libboost-dev:riscv64 (1.83.0.1ubuntu2) ... Selecting previously unselected package libgtest-dev:riscv64. Preparing to unpack .../84-libgtest-dev_1.14.0-1_riscv64.deb ... Unpacking libgtest-dev:riscv64 (1.14.0-1) ... Selecting previously unselected package libpbihdf-dev:riscv64. Preparing to unpack .../85-libpbihdf-dev_5.3.5+dfsg-6build5_riscv64.deb ... Unpacking libpbihdf-dev:riscv64 (5.3.5+dfsg-6build5) ... Selecting previously unselected package libpbseq-dev:riscv64. Preparing to unpack .../86-libpbseq-dev_5.3.5+dfsg-6build5_riscv64.deb ... Unpacking libpbseq-dev:riscv64 (5.3.5+dfsg-6build5) ... Selecting previously unselected package libpkgconf3:riscv64. Preparing to unpack .../87-libpkgconf3_1.8.1-2build1_riscv64.deb ... Unpacking libpkgconf3:riscv64 (1.8.1-2build1) ... Selecting previously unselected package ninja-build. Preparing to unpack .../88-ninja-build_1.11.1-2_riscv64.deb ... Unpacking ninja-build (1.11.1-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../89-python3-setuptools_68.1.2-2ubuntu1_all.deb ... Unpacking python3-setuptools (68.1.2-2ubuntu1) ... Selecting previously unselected package meson. Preparing to unpack .../90-meson_1.3.2-1ubuntu1_all.deb ... Unpacking meson (1.3.2-1ubuntu1) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../91-pkgconf-bin_1.8.1-2build1_riscv64.deb ... Unpacking pkgconf-bin (1.8.1-2build1) ... Selecting previously unselected package pkgconf:riscv64. Preparing to unpack .../92-pkgconf_1.8.1-2build1_riscv64.deb ... Unpacking pkgconf:riscv64 (1.8.1-2build1) ... Selecting previously unselected package pkg-config:riscv64. Preparing to unpack .../93-pkg-config_1.8.1-2build1_riscv64.deb ... Unpacking pkg-config:riscv64 (1.8.1-2build1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../94-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libhtscodecs2:riscv64 (1.6.0-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:riscv64 (1.5.7-2) ... Setting up libboost1.83-dev:riscv64 (1.83.0-2.1ubuntu3) ... Setting up hdf5-helpers (1.10.10+repack-3.1ubuntu4) ... Setting up libmagic-mgc (1:5.45-3build1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.14.1ubuntu5) ... Setting up libbrotli1:riscv64 (1.1.0-2build2) ... Setting up libuv1t64:riscv64 (1.48.0-1.1build1) ... Setting up libmagic1t64:riscv64 (1:5.45-3build1) ... Setting up libpsl5t64:riscv64 (0.21.2-1.1build1) ... Setting up libnghttp2-14:riscv64 (1.59.0-1build2) ... Setting up libdeflate0:riscv64 (1.19-1build1) ... Setting up gettext-base (0.21-14ubuntu2) ... Setting up m4 (1.4.19-4build1) ... Setting up file (1:5.45-3build1) ... Setting up googletest (1.14.0-1) ... Setting up libaec0:riscv64 (1.1.2-1) ... Setting up ninja-build (1.11.1-2) ... Setting up libelf1t64:riscv64 (0.190-1.1build4) ... Setting up libdw1t64:riscv64 (0.190-1.1build4) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg1-5ubuntu3) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:riscv64 (1.8.1-2build1) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-2build7) ... Setting up libssl-dev:riscv64 (3.0.13-0ubuntu3) ... Setting up autopoint (0.21-14ubuntu2) ... Setting up libjsoncpp25:riscv64 (1.9.5-6build1) ... Setting up pkgconf-bin (1.8.1-2build1) ... Setting up libjpeg-turbo8:riscv64 (2.1.5-2ubuntu2) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg1-5ubuntu3) ... Setting up libssh-4:riscv64 (0.10.6-2build2) ... Setting up libgfortran5:riscv64 (14-20240330-1ubuntu2) ... Setting up autoconf (2.71-3) ... Setting up liblzma-dev:riscv64 (5.6.1+really5.4.5-1) ... Setting up libicu74:riscv64 (74.2-1ubuntu3) ... Setting up zlib1g-dev:riscv64 (1:1.3.dfsg-3.1ubuntu2) ... Setting up dwz (0.15-1build6) ... Setting up librhash0:riscv64 (1.4.3-3build1) ... Setting up libuchardet0:riscv64 (0.0.8-1build1) ... Setting up debugedit (1:5.0-5build2) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up cmake-data (3.28.3-1build6) ... Setting up libboost-dev:riscv64 (1.83.0.1ubuntu2) ... Setting up libdeflate-dev:riscv64 (1.19-1build1) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.3ubuntu3) ... Setting up libldap2:riscv64 (2.6.7+dfsg-1~exp1ubuntu8) ... Setting up libsz2:riscv64 (1.1.2-1) ... Setting up libpbcopper2.3.0:riscv64 (2.3.0+dfsg-2) ... Setting up libjpeg8:riscv64 (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libjpeg-turbo8-dev:riscv64 (2.1.5-2ubuntu2) ... Setting up gettext (0.21-14ubuntu2) ... Setting up libpython3.12-stdlib:riscv64 (3.12.3-1) ... Setting up libgtest-dev:riscv64 (1.14.0-1) ... Setting up libcurl4t64:riscv64 (8.5.0-2ubuntu10) ... Setting up libtool (2.4.7-7build1) ... Setting up python3.12 (3.12.3-1) ... Setting up libaec-dev:riscv64 (1.1.2-1) ... Setting up libcurl3t64-gnutls:riscv64 (8.5.0-2ubuntu10) ... Setting up libcurl4-gnutls-dev:riscv64 (8.5.0-2ubuntu10) ... Setting up pkgconf:riscv64 (1.8.1-2build1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:riscv64 (1.8.1-2build1) ... Setting up libpbcopper-dev:riscv64 (2.3.0+dfsg-2) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3build2) ... Setting up libhts3t64:riscv64 (1.19+ds-1.1build3) ... Setting up libjpeg8-dev:riscv64 (8c-2ubuntu11) ... Setting up libhdf5-103-1t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up libarchive13t64:riscv64 (3.7.2-2) ... Setting up libpython3-stdlib:riscv64 (3.12.3-0ubuntu1) ... Setting up libhdf5-hl-100t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpbbam2.4.0:riscv64 (2.4.0+dfsg-1build1) ... Setting up libhdf5-cpp-103-1t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu11) ... Setting up libpbdata-dev:riscv64 (5.3.5+dfsg-6build5) ... Setting up libhts-dev:riscv64 (1.19+ds-1.1build3) ... Setting up libhdf5-fortran-102t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up python3 (3.12.3-0ubuntu1) ... Setting up man-db (2.12.0-4build2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libblasr5.3.5:riscv64 (5.3.5+dfsg-6build5) ... Setting up cmake (3.28.3-1build6) ... Setting up libpbbam-dev:riscv64 (2.4.0+dfsg-1build1) ... Setting up libhdf5-hl-cpp-100t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... Setting up python3-setuptools (68.1.2-2ubuntu1) ... Setting up libhdf5-hl-fortran-100t64:riscv64 (1.10.10+repack-3.1ubuntu4) ... Setting up meson (1.3.2-1ubuntu1) ... Setting up debhelper (13.14.1ubuntu5) ... Setting up libhdf5-dev (1.10.10+repack-3.1ubuntu4) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpbihdf-dev:riscv64 (5.3.5+dfsg-6build5) ... Setting up libblasr-dev:riscv64 (5.3.5+dfsg-6build5) ... Setting up libpbseq-dev:riscv64 (5.3.5+dfsg-6build5) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for systemd (255.4-1ubuntu7) ... Processing triggers for libc-bin (2.39-0ubuntu8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.5.0-26-generic #26.1~22.04.1-Ubuntu SMP Thu Mar 14 04:00:07 UTC 2024 riscv64 (riscv64) Toolchain package versions: binutils_2.42-4ubuntu2 dpkg-dev_1.22.6ubuntu6 g++-13_13.2.0-23ubuntu3 gcc-13_13.2.0-23ubuntu3 libc6-dev_2.39-0ubuntu8 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 linux-libc-dev_6.8.0-22.22 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1build1 apt_2.7.14build2 apt-utils_2.7.14build2 autoconf_2.71-3 automake_1:1.16.5-1.3ubuntu1 autopoint_0.21-14ubuntu2 autotools-dev_20220109.1 base-files_13ubuntu9 base-passwd_3.6.3build1 bash_5.2.21-2ubuntu4 bash-completion_1:2.11-8 binutils_2.42-4ubuntu2 binutils-common_2.42-4ubuntu2 binutils-riscv64-linux-gnu_2.42-4ubuntu2 bsdextrautils_2.39.3-9ubuntu6 bsdutils_1:2.39.3-9ubuntu6 build-essential_12.10ubuntu1 bzip2_1.0.8-5.1 ca-certificates_20240203 cmake_3.28.3-1build6 cmake-data_3.28.3-1build6 coreutils_9.4-3ubuntu6 cpp_4:13.2.0-7ubuntu1 cpp-13_13.2.0-23ubuntu3 cpp-13-riscv64-linux-gnu_13.2.0-23ubuntu3 cpp-riscv64-linux-gnu_4:13.2.0-7ubuntu1 dash_0.5.12-6ubuntu5 debconf_1.5.86ubuntu1 debconf-i18n_1.5.86ubuntu1 debhelper_13.14.1ubuntu5 debianutils_5.17build1 debugedit_1:5.0-5build2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1build1 dpkg_1.22.6ubuntu6 dpkg-dev_1.22.6ubuntu6 dwz_0.15-1build6 e2fsprogs_1.47.0-2.4~exp1ubuntu4 fakeroot_1.33-1build1 file_1:5.45-3build1 findutils_4.9.0-5build1 g++_4:13.2.0-7ubuntu1 g++-13_13.2.0-23ubuntu3 g++-13-riscv64-linux-gnu_13.2.0-23ubuntu3 g++-riscv64-linux-gnu_4:13.2.0-7ubuntu1 gcc_4:13.2.0-7ubuntu1 gcc-13_13.2.0-23ubuntu3 gcc-13-base_13.2.0-23ubuntu3 gcc-13-riscv64-linux-gnu_13.2.0-23ubuntu3 gcc-14-base_14-20240330-1ubuntu2 gcc-riscv64-linux-gnu_4:13.2.0-7ubuntu1 gettext_0.21-14ubuntu2 gettext-base_0.21-14ubuntu2 googletest_1.14.0-1 gpg_2.4.4-2ubuntu17 gpg-agent_2.4.4-2ubuntu17 gpgconf_2.4.4-2ubuntu17 gpgv_2.4.4-2ubuntu17 grep_3.11-4build1 groff-base_1.23.0-3build2 gzip_1.12-1ubuntu3 hdf5-helpers_1.10.10+repack-3.1ubuntu4 hostname_3.23+nmu2ubuntu2 init_1.66ubuntu1 init-system-helpers_1.66ubuntu1 intltool-debian_0.35.0+20060710.6 krb5-locales_1.20.1-6ubuntu2 libacl1_2.3.2-1build1 libaec-dev_1.1.2-1 libaec0_1.1.2-1 libapparmor1_4.0.0-beta3-0ubuntu3 libapt-pkg6.0t64_2.7.14build2 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.2-2 libargon2-1_0~20190702+dfsg-4build1 libasan8_14-20240330-1ubuntu2 libassuan0_2.5.6-1build1 libatomic1_14-20240330-1ubuntu2 libattr1_1:2.5.2-1build1 libaudit-common_1:3.1.2-2.1build1 libaudit1_1:3.1.2-2.1build1 libbinutils_2.42-4ubuntu2 libblasr-dev_5.3.5+dfsg-6build5 libblasr5.3.5_5.3.5+dfsg-6build5 libblkid1_2.39.3-9ubuntu6 libboost-dev_1.83.0.1ubuntu2 libboost1.83-dev_1.83.0-2.1ubuntu3 libbrotli1_1.1.0-2build2 libbz2-1.0_1.0.8-5.1 libc-bin_2.39-0ubuntu8 libc-dev-bin_2.39-0ubuntu8 libc6_2.39-0ubuntu8 libc6-dev_2.39-0ubuntu8 libcap-ng0_0.8.4-2build2 libcap2_1:2.66-5ubuntu2 libcc1-0_14-20240330-1ubuntu2 libcom-err2_1.47.0-2.4~exp1ubuntu4 libcrypt-dev_1:4.4.36-4build1 libcrypt1_1:4.4.36-4build1 libcryptsetup12_2:2.7.0-1ubuntu4 libctf-nobfd0_2.42-4ubuntu2 libctf0_2.42-4ubuntu2 libcurl3t64-gnutls_8.5.0-2ubuntu10 libcurl4-gnutls-dev_8.5.0-2ubuntu10 libcurl4t64_8.5.0-2ubuntu10 libdb5.3t64_5.3.28+dfsg2-7 libdebconfclient0_0.271ubuntu3 libdebhelper-perl_13.14.1ubuntu5 libdeflate-dev_1.19-1build1 libdeflate0_1.19-1build1 libdevmapper1.02.1_2:1.02.185-3ubuntu3 libdpkg-perl_1.22.6ubuntu6 libdw1t64_0.190-1.1build4 libelf1t64_0.190-1.1build4 libexpat1_2.6.1-2build1 libext2fs2t64_1.47.0-2.4~exp1ubuntu4 libfakeroot_1.33-1build1 libfdisk1_2.39.3-9ubuntu6 libffi8_3.4.6-1build1 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-13-dev_13.2.0-23ubuntu3 libgcc-s1_14-20240330-1ubuntu2 libgcrypt20_1.10.3-2build1 libgdbm-compat4t64_1.23-5.1build1 libgdbm6t64_1.23-5.1build1 libgfortran5_14-20240330-1ubuntu2 libgmp10_2:6.3.0+dfsg-2ubuntu6 libgnutls30t64_3.8.3-1.1ubuntu3 libgomp1_14-20240330-1ubuntu2 libgpg-error-l10n_1.47-3build2 libgpg-error0_1.47-3build2 libgpm2_1.20.7-11 libgssapi-krb5-2_1.20.1-6ubuntu2 libgtest-dev_1.14.0-1 libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4 libhdf5-cpp-103-1t64_1.10.10+repack-3.1ubuntu4 libhdf5-dev_1.10.10+repack-3.1ubuntu4 libhdf5-fortran-102t64_1.10.10+repack-3.1ubuntu4 libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4 libhdf5-hl-cpp-100t64_1.10.10+repack-3.1ubuntu4 libhdf5-hl-fortran-100t64_1.10.10+repack-3.1ubuntu4 libhogweed6t64_3.9.1-2.2build1 libhts-dev_1.19+ds-1.1build3 libhts3t64_1.19+ds-1.1build3 libhtscodecs2_1.6.0-1 libicu74_74.2-1ubuntu3 libidn2-0_2.3.7-2build1 libip4tc2_1.8.10-3ubuntu2 libisl23_0.26-3build1 libjansson4_2.14-2build2 libjpeg-dev_8c-2ubuntu11 libjpeg-turbo8_2.1.5-2ubuntu2 libjpeg-turbo8-dev_2.1.5-2ubuntu2 libjpeg8_8c-2ubuntu11 libjpeg8-dev_8c-2ubuntu11 libjson-c5_0.17-1build1 libjsoncpp25_1.9.5-6build1 libk5crypto3_1.20.1-6ubuntu2 libkeyutils1_1.6.3-3build1 libkmod2_31+20240202-2ubuntu6 libkrb5-3_1.20.1-6ubuntu2 libkrb5support0_1.20.1-6ubuntu2 libldap2_2.6.7+dfsg-1~exp1ubuntu8 liblocale-gettext-perl_1.07-6ubuntu5 liblockfile-bin_1.17-1build3 liblockfile1_1.17-1build3 liblz4-1_1.9.4-1build1 liblzma-dev_5.6.1+really5.4.5-1 liblzma5_5.6.1+really5.4.5-1 libmagic-mgc_1:5.45-3build1 libmagic1t64_1:5.45-3build1 libmd0_1.1.0-2build1 libmount1_2.39.3-9ubuntu6 libmpc3_1.3.1-1build1 libmpfr6_4.2.1-1build1 libncursesw6_6.4+20240113-1ubuntu2 libnettle8t64_3.9.1-2.2build1 libnghttp2-14_1.59.0-1build2 libnpth0t64_1.6-3.1build1 libnsl-dev_1.3.0-3build3 libnsl2_1.3.0-3build3 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-5build1 libp11-kit0_0.25.3-4ubuntu2 libpam-modules_1.5.3-5ubuntu5 libpam-modules-bin_1.5.3-5ubuntu5 libpam-runtime_1.5.3-5ubuntu5 libpam0g_1.5.3-5ubuntu5 libpbbam-dev_2.4.0+dfsg-1build1 libpbbam2.4.0_2.4.0+dfsg-1build1 libpbcopper-dev_2.3.0+dfsg-2 libpbcopper2.3.0_2.3.0+dfsg-2 libpbdata-dev_5.3.5+dfsg-6build5 libpbihdf-dev_5.3.5+dfsg-6build5 libpbseq-dev_5.3.5+dfsg-6build5 libpcre2-8-0_10.42-4ubuntu2 libperl5.36_5.36.0-9ubuntu1 libperl5.38t64_5.38.2-3.2build2 libpipeline1_1.5.7-2 libpkgconf3_1.8.1-2build1 libpng16-16t64_1.6.43-5build1 libproc2-0_2:4.0.4-4ubuntu3 libpsl5t64_0.21.2-1.1build1 libpython3-stdlib_3.12.3-0ubuntu1 libpython3.12-minimal_3.12.3-1 libpython3.12-stdlib_3.12.3-1 libreadline8t64_8.2-4build1 librhash0_1.4.3-3build1 librtmp1_2.4+20151223.gitfa8646d.1-2build7 libsasl2-2_2.1.28+dfsg1-5ubuntu3 libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3 libseccomp2_2.5.5-1ubuntu3 libselinux1_3.5-2ubuntu2 libsemanage-common_3.5-1build5 libsemanage2_3.5-1build5 libsepol2_3.5-2build1 libsframe1_2.42-4ubuntu2 libsmartcols1_2.39.3-9ubuntu6 libsqlite3-0_3.45.1-1ubuntu2 libss2_1.47.0-2.4~exp1ubuntu4 libssh-4_0.10.6-2build2 libssl-dev_3.0.13-0ubuntu3 libssl3t64_3.0.13-0ubuntu3 libstdc++-13-dev_13.2.0-23ubuntu3 libstdc++6_14-20240330-1ubuntu2 libsub-override-perl_0.10-1 libsystemd-shared_255.4-1ubuntu7 libsystemd0_255.4-1ubuntu7 libsz2_1.1.2-1 libtasn1-6_4.19.0-3build1 libtext-charwidth-perl_0.04-11build3 libtext-iconv-perl_1.7-8build3 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20240113-1ubuntu2 libtirpc-common_1.3.4+ds-1.1build1 libtirpc-dev_1.3.4+ds-1.1build1 libtirpc3t64_1.3.4+ds-1.1build1 libtool_2.4.7-7build1 libubsan1_14-20240330-1ubuntu2 libuchardet0_0.0.8-1build1 libudev1_255.4-1ubuntu7 libunistring2_1.0-2 libunistring5_1.1-2build1 libuuid1_2.39.3-9ubuntu6 libuv1t64_1.48.0-1.1build1 libxml2_2.9.14+dfsg-1.3ubuntu3 libxxhash0_0.8.2-2build1 libzstd1_1.5.5+dfsg2-2build1 linux-libc-dev_6.8.0-22.22 lockfile-progs_0.1.19build2 login_1:4.13+dfsg1-4ubuntu3 logsave_1.47.0-2.4~exp1ubuntu4 lto-disabled-list_47 m4_1.4.19-4build1 make_4.3-4.1build2 man-db_2.12.0-4build2 mawk_1.3.4.20240123-1build1 media-types_10.1.0 meson_1.3.2-1ubuntu1 mount_2.39.3-9ubuntu6 ncurses-base_6.4+20240113-1ubuntu2 ncurses-bin_6.4+20240113-1ubuntu2 netbase_6.4 ninja-build_1.11.1-2 openssl_3.0.13-0ubuntu3 optipng_0.7.8+ds-1build2 passwd_1:4.13+dfsg1-4ubuntu3 patch_2.7.6-7build3 perl_5.38.2-3.2build2 perl-base_5.38.2-3.2build2 perl-modules-5.36_5.36.0-9ubuntu1 perl-modules-5.38_5.38.2-3.2build2 pinentry-curses_1.2.1-3ubuntu5 pkg-config_1.8.1-2build1 pkgbinarymangler_154 pkgconf_1.8.1-2build1 pkgconf-bin_1.8.1-2build1 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-4ubuntu3 psmisc_23.7-1build1 python3_3.12.3-0ubuntu1 python3-minimal_3.12.3-0ubuntu1 python3-pkg-resources_68.1.2-2ubuntu1 python3-setuptools_68.1.2-2ubuntu1 python3.12_3.12.3-1 python3.12-minimal_3.12.3-1 readline-common_8.2-4build1 rpcsvc-proto_1.4.2-0ubuntu7 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2build1 sensible-utils_0.0.22 systemd_255.4-1ubuntu7 systemd-dev_255.4-1ubuntu7 systemd-sysv_255.4-1ubuntu7 sysvinit-utils_3.08-6ubuntu3 tar_1.35+dfsg-3build1 tzdata_2024a-2ubuntu1 ubuntu-keyring_2023.11.28.1 util-linux_2.39.3-9ubuntu6 uuid-runtime_2.39.3-9ubuntu6 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1ubuntu2 zlib1g-dev_1:1.3.dfsg-3.1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: blasr Binary: blasr Architecture: any Version: 5.3.5+dfsg-6build5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/PacificBiosciences/blasr Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/blasr Vcs-Git: https://salsa.debian.org/med-team/blasr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), python3:any, meson, cmake, pkg-config, libboost-dev, libhdf5-dev, zlib1g-dev, libpbseq-dev, libpbbam-dev, libpbdata-dev, libpbcopper-dev, libgtest-dev, libblasr-dev (>= 5.3.4+dfsg-4~) Package-List: blasr deb science optional arch=any Checksums-Sha1: 334132438305cfaf3d7ee6208bcb4cc4b493be5d 124460 blasr_5.3.5+dfsg.orig.tar.xz 37a7f37c42a46867c2cd77d7ed33899b149cd944 11588 blasr_5.3.5+dfsg-6build5.debian.tar.xz Checksums-Sha256: 765ac47ae74f56e3bee17e2a3c81d404faf7419e42eb45bc9f2a71c7a5942205 124460 blasr_5.3.5+dfsg.orig.tar.xz e30b558953080b70aea8ffa3763cb7d84979d968e315d09c71c537bdebde055a 11588 blasr_5.3.5+dfsg-6build5.debian.tar.xz Files: 46c888e8f9c606d840b0d9dcc8036b21 124460 blasr_5.3.5+dfsg.orig.tar.xz a9c2c38c92402697876f91cd2cd0326f 11588 blasr_5.3.5+dfsg-6build5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEErApP8SYRtvzPAcEROTWH2X2GUAsFAmYcC34ACgkQOTWH2X2G UAvTGRAAlPixAn9RxcgLUREGyFIlvSqi2XbX+RwjlKDMs2eOxH0Gpiya/70/0T10 5pp71z3vJ5ho+L4p4ouss/1T1g3yVBD+EiFhVSAOcK568I8zanXLrzJATPtO3OcQ /lZA8rEsbp7yUkszBxqoqCYGc2QFPbjoLXxkTk/ITLmvQhHrzehBy2sBC6YLj7aJ hRr29l4UuMYEgaMrETpm+Z9bnbIurgXtFGNrhvhs4qwyXv1IUbDbm4nHZwn7/5PQ ous/tppQttbV+UV1JMyJGxDgoeYVutWZ0UBVwvuOwlA2KBkZEtpP2so62VDpc6Ht cKasqQ1VwgLwpE4gk25D5VHLgQbLQWxNJhANWtP3lFpijiDpa71Fp20IcbahB8GK zg6ZeWvuEaw7gFeAAHcPUqRAT9P9r7qTi/U/5uVKgSFmsregpDPuchN4+OmUJogO pL3ifYrTfJ/SOSOoblbqPH8ylFNa/R/lFmwqBUE96ll3GtfWw7ayhuxJEnFmE/+Q 7dErPrfnMfJilu9wp4NVbHEm+yxoLVX4lTiy+R2xcoK/xw5xhlEbStbO48y1JGVz rCcrciQq8B22OykY9jHdIbIuX4ofoO1m/ZGM9ldNisVUg6rJlaDU8OuNovHoE8CD f5VGSGOXzy9MFoQMdZZZTDrTzw3d6iQSdUYvGSdjIt/KIwi/cIs= =7OLc -----END PGP SIGNATURE----- gpgv: Signature made Sun Apr 14 16:59:42 2024 UTC gpgv: using RSA key AC0A4FF12611B6FCCF01C111393587D97D86500B gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./blasr_5.3.5+dfsg-6build5.dsc: no acceptable signature found dpkg-source: info: extracting blasr in /<> dpkg-source: info: unpacking blasr_5.3.5+dfsg.orig.tar.xz dpkg-source: info: unpacking blasr_5.3.5+dfsg-6build5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_pblibs.patch dpkg-source: info: applying 2to3.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-28055381 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-28055381 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-28055381 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package blasr dpkg-buildpackage: info: source version 5.3.5+dfsg-6build5 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules binary-arch dh binary-arch --buildsystem=meson dh_update_autotools_config -a -O--buildsystem=meson dh_autoreconf -a -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' LDFLAGS="-L/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu/hdf5/serial -lhdf5_cpp -lhdf5 -Wl,-Bsymbolic-functions -Wl,-z,relro" CPPFLAGS="-isystem /usr/include/hdf5/serial" dh_auto_configure -- -Dtests=false cd obj-riscv64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb LC_ALL=C.UTF-8 meson setup .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/riscv64-linux-gnu -Dpython.bytecompile=-1 -Dtests=false The Meson build system Version: 1.3.2 Source dir: /<> Build dir: /<>/obj-riscv64-linux-gnu Build type: native build Project name: blasr Project version: 5.3.5 C++ compiler for the host machine: c++ (gcc 13.2.0 "c++ (Ubuntu 13.2.0-23ubuntu3) 13.2.0") C++ linker for the host machine: c++ ld.bfd 2.42 Host machine cpu family: riscv64 Host machine cpu: riscv64 Compiler for C++ supports arguments -Wno-delete-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-non-virtual-dtor: YES Compiler for C++ supports arguments -Wno-unused-but-set-variable: YES Compiler for C++ supports arguments -Wno-unused-variable: YES Run-time dependency threads found: YES Found pkg-config: YES (/usr/bin/pkg-config) 1.8.1 Run-time dependency Boost found: YES 1.83.0 (/usr/include) Library pbbam found: YES Run-time dependency libblasr found: YES 5.3.5 Run-time dependency zlib found: YES 1.3 Run-time dependency htslib found: YES 1.19 Library pbcopper found: YES Configuring BlasrVersion.h using configuration Build targets in project: 5 blasr 5.3.5 User defined options buildtype : plain libdir : lib/riscv64-linux-gnu localstatedir : /var prefix : /usr sysconfdir : /etc wrap_mode : nodownload python.bytecompile: -1 tests : false Found ninja-1.11.1 at /usr/bin/ninja make[1]: Leaving directory '/<>' dh_auto_build -a -O--buildsystem=meson cd obj-riscv64-linux-gnu && LC_ALL=C.UTF-8 ninja -j4 -v [1/25] /usr/bin/meson --internal vcstagger ../BlasrGitHash.h.in BlasrGitHash.h 5.3.5 /<> @BLASR_GIT_SHA1@ '(.*)' git describe --always '--dirty=*' [2/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SAModify.cpp.o -MF libblasr_impl.a.p/extrautils_SAModify.cpp.o.d -o libblasr_impl.a.p/extrautils_SAModify.cpp.o -c ../extrautils/SAModify.cpp [3/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o -MF libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o.d -o libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o -c ../extrautils/BwtToSuffixArray.cpp [4/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -MF libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o.d -o libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o -c ../extrautils/SuffixArrayToBWT.cpp In file included from ../extrautils/SuffixArrayToBWT.cpp:4: /usr/include/pbseq/alignment/bwt/BWT.hpp: In member function ‘void Bwt::InitializeDNACharacterCount() [with T_BWT_Sequence = PackedDNASequence; T_DNASequence = FASTASequence]’: /usr/include/pbseq/alignment/bwt/BWT.hpp:192:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 192 | charCount[0]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:193:17: note: here 193 | case 0: //A | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:194:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 194 | charCount[1]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:195:17: note: here 195 | case 1: //C | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:196:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 196 | charCount[2]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:197:17: note: here 197 | case 2: //G | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:198:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 198 | charCount[3]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:199:17: note: here 199 | case 3: //T | ^~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:200:21: warning: this statement may fall through [-Wimplicit-fallthrough=] 200 | charCount[4]++; | ^~~~~~~~~ /usr/include/pbseq/alignment/bwt/BWT.hpp:201:17: note: here 201 | case 4: //N | ^~~~ [5/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SWMatcher.cpp.o -MF libblasr_impl.a.p/extrautils_SWMatcher.cpp.o.d -o libblasr_impl.a.p/extrautils_SWMatcher.cpp.o -c ../extrautils/SWMatcher.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../extrautils/SWMatcher.cpp:6: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/13/bits/alloc_traits.h:538:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ /usr/include/c++/13/bits/stl_vector.h:1283:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../extrautils/SWMatcher.cpp:2: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [6/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o -MF libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o.d -o libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o -c ../extrautils/ExciseRepeats.cpp [7/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SALS.cpp.o -MF libblasr_impl.a.p/extrautils_SALS.cpp.o.d -o libblasr_impl.a.p/extrautils_SALS.cpp.o -c ../extrautils/SALS.cpp [8/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o -MF libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o.d -o libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o -c ../extrautils/SimpleShredder.cpp [9/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_Evolve.cpp.o -MF libblasr_impl.a.p/extrautils_Evolve.cpp.o.d -o libblasr_impl.a.p/extrautils_Evolve.cpp.o -c ../extrautils/Evolve.cpp [10/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o -MF libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o.d -o libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o -c ../extrautils/BuildSequenceDB.cpp [11/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o -MF libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o.d -o libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o -c ../extrautils/PrintTupleCountTable.cpp [12/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o -MF libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o.d -o libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o -c ../extrautils/StoreQualityByContextFromCmpH5.cpp In file included from /usr/include/pbseq/hdf/DatasetCollection.hpp:9, from /usr/include/pbseq/hdf/HDFBasReader.hpp:11, from /usr/include/pbseq/alignment/files/ReaderAgglomerate.hpp:8, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:2: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:123:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from /usr/include/pbseq/hdf/HDF2DArray.hpp:4, from /usr/include/pbseq/hdf/HDFBasReader.hpp:12: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:124:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:125:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:126:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:127:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:128:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:137:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray >’: /usr/include/pbseq/hdf/HDF2DArray.hpp:7:7: required from ‘class HDF2DArray >’ /usr/include/pbseq/hdf/HDFCmpRootGroup.hpp:17:29: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:156: /usr/include/pbseq/hdf/BufferedHDF2DArrayImpl.hpp:70:5: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 70 | int BufferedHDF2DArray::Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength, | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/format/StickAlignmentPrinter.hpp:8, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/13/bits/alloc_traits.h:538:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ /usr/include/c++/13/bits/stl_vector.h:1283:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/vector:63, from /usr/include/pbseq/alignment/datastructures/alignment/CmpFile.hpp:4, from ../extrautils/StoreQualityByContextFromCmpH5.cpp:1: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [13/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamToM4.cpp.o -MF libblasr_impl.a.p/utils_SamToM4.cpp.o.d -o libblasr_impl.a.p/utils_SamToM4.cpp.o -c ../utils/SamToM4.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamToM4.cpp:21: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/13/bits/alloc_traits.h:538:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ /usr/include/c++/13/bits/stl_vector.h:1283:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../utils/SamToM4.cpp:19: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [14/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SDPMatcher.cpp.o -MF libblasr_impl.a.p/utils_SDPMatcher.cpp.o.d -o libblasr_impl.a.p/utils_SDPMatcher.cpp.o -c ../utils/SDPMatcher.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SDPMatcher.cpp:8: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/13/bits/alloc_traits.h:538:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ /usr/include/c++/13/bits/stl_vector.h:1283:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../utils/SDPMatcher.cpp:3: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [15/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamToCmpH5.cpp.o -MF libblasr_impl.a.p/utils_SamToCmpH5.cpp.o.d -o libblasr_impl.a.p/utils_SamToCmpH5.cpp.o -c ../utils/SamToCmpH5.cpp In file included from /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:12, from /usr/include/pbseq/hdf/HDF2DArray.hpp:4, from /usr/include/pbseq/hdf/HDFCmpFile.hpp:11, from /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp:7, from ../utils/SamToCmpH5.cpp:5: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:123:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:124:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:125:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:126:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:127:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:128:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:137:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray >’: /usr/include/pbseq/hdf/HDF2DArray.hpp:7:7: required from ‘class HDF2DArray >’ /usr/include/pbseq/hdf/HDFCmpRootGroup.hpp:17:29: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:156: /usr/include/pbseq/hdf/BufferedHDF2DArrayImpl.hpp:70:5: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 70 | int BufferedHDF2DArray::Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength, | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/AlignmentCandidate.hpp:6, from ../utils/SamToCmpH5.cpp:3: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/13/bits/alloc_traits.h:538:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ /usr/include/c++/13/bits/stl_vector.h:1283:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../utils/SamToCmpH5.cpp:1: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp:79: /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp: In instantiation of ‘unsigned int AlignmentSetToCmpH5Adapter::StoreRefGroup(std::string, T_CmpFile&) [with T_CmpFile = HDFCmpFile >; std::string = std::__cxx11::basic_string]’: /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:136:31: required from ‘void AlignmentSetToCmpH5Adapter::StoreAlignmentCandidate(AlignmentCandidate<>&, int, T_CmpFile&, int, bool) [with T_CmpFile = HDFCmpFile >]’ /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:246:32: required from ‘void AlignmentSetToCmpH5Adapter::StoreAlignmentCandidateList(std::vector >&, T_CmpFile&, int, bool) [with T_CmpFile = HDFCmpFile >]’ ../utils/SamToCmpH5.cpp:199:56: required from here /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5AdapterImpl.hpp:64:45: warning: implicitly-declared ‘RefGroupNameId& RefGroupNameId::operator=(const RefGroupNameId&)’ is deprecated [-Wdeprecated-copy] 64 | refNameToRefGroupNameandId[refName] = RefGroupNameId(refGroupName, refGroupId); /usr/include/pbseq/alignment/datastructures/alignmentset/AlignmentSetToCmpH5Adapter.hpp:28:5: note: because ‘RefGroupNameId’ has user-provided ‘RefGroupNameId::RefGroupNameId(const RefGroupNameId&)’ 28 | RefGroupNameId(const RefGroupNameId &rhs) | ^~~~~~~~~~~~~~ [16/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_PulseToFasta.cpp.o -MF libblasr_impl.a.p/utils_PulseToFasta.cpp.o.d -o libblasr_impl.a.p/utils_PulseToFasta.cpp.o -c ../utils/PulseToFasta.cpp In file included from /usr/include/pbseq/hdf/DatasetCollection.hpp:9, from /usr/include/pbseq/hdf/HDFBasReader.hpp:11, from /usr/include/pbseq/alignment/files/ReaderAgglomerate.hpp:8, from ../utils/PulseToFasta.cpp:5: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:123:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from /usr/include/pbseq/hdf/HDF2DArray.hpp:4, from /usr/include/pbseq/hdf/HDFBasReader.hpp:12: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:124:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:125:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:126:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:127:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:128:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:137:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [17/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_SamFilter.cpp.o -MF libblasr_impl.a.p/utils_SamFilter.cpp.o.d -o libblasr_impl.a.p/utils_SamFilter.cpp.o -c ../utils/SamFilter.cpp In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from ../utils/SamFilter.cpp:32: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/13/bits/alloc_traits.h:538:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ /usr/include/c++/13/bits/stl_vector.h:1283:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../utils/SamFilter.cpp:29: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [18/25] c++ -Ilibblasr_impl.a.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -fPIC -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -MD -MQ libblasr_impl.a.p/utils_LoadPulses.cpp.o -MF libblasr_impl.a.p/utils_LoadPulses.cpp.o.d -o libblasr_impl.a.p/utils_LoadPulses.cpp.o -c ../utils/LoadPulses.cpp In file included from /usr/include/pbseq/hdf/DatasetCollection.hpp:9, from /usr/include/pbseq/hdf/HDFBasReader.hpp:11, from ../utils/LoadPulses.cpp:16: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:123:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from /usr/include/pbseq/hdf/HDF2DArray.hpp:4, from /usr/include/pbseq/hdf/HDFBasReader.hpp:12: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:124:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:125:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:126:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:127:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:128:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:137:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray >’: /usr/include/pbseq/hdf/HDF2DArray.hpp:7:7: required from ‘class HDF2DArray >’ /usr/include/pbseq/hdf/HDFCmpRootGroup.hpp:17:29: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:156: /usr/include/pbseq/hdf/BufferedHDF2DArrayImpl.hpp:70:5: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 70 | int BufferedHDF2DArray::Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength, | ^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/datastructures/alignment/ByteAlignment.h:6, from ../utils/LoadPulses.cpp:11: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/13/bits/alloc_traits.h:538:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ /usr/include/c++/13/bits/stl_vector.h:1283:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/bits/stl_tree.h:64, from /usr/include/c++/13/map:62, from ../utils/LoadPulses.cpp:6: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [19/25] rm -f libblasr_impl.a && gcc-ar csrDT libblasr_impl.a libblasr_impl.a.p/extrautils_SuffixArrayToBWT.cpp.o libblasr_impl.a.p/extrautils_BwtToSuffixArray.cpp.o libblasr_impl.a.p/extrautils_SWMatcher.cpp.o libblasr_impl.a.p/extrautils_SAModify.cpp.o libblasr_impl.a.p/extrautils_ExciseRepeats.cpp.o libblasr_impl.a.p/extrautils_StoreQualityByContextFromCmpH5.cpp.o libblasr_impl.a.p/extrautils_SALS.cpp.o libblasr_impl.a.p/extrautils_SimpleShredder.cpp.o libblasr_impl.a.p/extrautils_Evolve.cpp.o libblasr_impl.a.p/extrautils_BuildSequenceDB.cpp.o libblasr_impl.a.p/extrautils_PrintTupleCountTable.cpp.o libblasr_impl.a.p/utils_SamToM4.cpp.o libblasr_impl.a.p/utils_SamToCmpH5.cpp.o libblasr_impl.a.p/utils_SDPMatcher.cpp.o libblasr_impl.a.p/utils_LoadPulses.cpp.o libblasr_impl.a.p/utils_PulseToFasta.cpp.o libblasr_impl.a.p/utils_SamFilter.cpp.o [20/25] c++ -Isawriter.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ sawriter.p/utils_SAWriter.cpp.o -MF sawriter.p/utils_SAWriter.cpp.o.d -o sawriter.p/utils_SAWriter.cpp.o -c ../utils/SAWriter.cpp [21/25] c++ -o sawriter sawriter.p/utils_SAWriter.cpp.o -L/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu/hdf5/serial -I/usr/include/pbseq -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial libblasr_impl.a -pthread -lpbbam /usr/lib/riscv64-linux-gnu/libblasr.so /usr/lib/riscv64-linux-gnu/libpbbam.so /usr/lib/riscv64-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/riscv64-linux-gnu/libz.so /usr/lib/riscv64-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group [22/25] c++ -ItoAfg.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ toAfg.p/utils_ToAfg.cpp.o -MF toAfg.p/utils_ToAfg.cpp.o.d -o toAfg.p/utils_ToAfg.cpp.o -c ../utils/ToAfg.cpp In file included from /usr/include/pbseq/hdf/DatasetCollection.hpp:9, from /usr/include/pbseq/hdf/HDFBasReader.hpp:11, from /usr/include/pbseq/alignment/files/ReaderAgglomerate.hpp:8, from ../utils/ToAfg.cpp:6: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:123:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from /usr/include/pbseq/hdf/HDF2DArray.hpp:4, from /usr/include/pbseq/hdf/HDFBasReader.hpp:12: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:124:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:125:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:126:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:127:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:128:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:137:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ [23/25] c++ -o toAfg toAfg.p/utils_ToAfg.cpp.o -L/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu/hdf5/serial -I/usr/include/pbseq -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial libblasr_impl.a -pthread -lpbbam /usr/lib/riscv64-linux-gnu/libblasr.so /usr/lib/riscv64-linux-gnu/libpbbam.so /usr/lib/riscv64-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/riscv64-linux-gnu/libz.so /usr/lib/riscv64-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group [24/25] c++ -Iblasr.p -I. -I.. -I/usr/include/libblasr -I/usr/include/hdf5/serial -I/usr/include/pbseq -fdiagnostics-color=always -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -Wextra -Wpedantic -std=c++17 -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial -DBOOST_ALL_NO_LIB -pthread -Wno-delete-non-virtual-dtor -Wno-non-virtual-dtor -Wno-unused-but-set-variable -Wno-unused-variable -DCMAKE_BUILD=1 -MD -MQ blasr.p/Blasr.cpp.o -MF blasr.p/Blasr.cpp.o.d -o blasr.p/Blasr.cpp.o -c ../Blasr.cpp In file included from /usr/include/pbseq/hdf/DatasetCollection.hpp:9, from /usr/include/pbseq/hdf/HDFBasReader.hpp:11, from /usr/include/pbseq/alignment/files/ReaderAgglomerate.hpp:8, from ../iblasr/BlasrHeaders.h:59, from ../iblasr/BlasrAlign.hpp:4, from ../Blasr.cpp:3: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:123:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ In file included from /usr/include/pbseq/hdf/HDF2DArray.hpp:4, from /usr/include/pbseq/hdf/HDFBasReader.hpp:12: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:124:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:125:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = unsigned char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:126:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short unsigned int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:127:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = short int; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:128:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = float; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp: In instantiation of ‘class BufferedHDF2DArray’: /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:137:1: required from here /usr/include/pbseq/hdf/HDFData.hpp:44:17: warning: ‘virtual int HDFData::Initialize(HDFGroup&, const std::string&)’ was hidden [-Woverloaded-virtual=] 44 | virtual int Initialize(HDFGroup &parentGroup, const std::string &datasetName); | ^~~~~~~~~~ /usr/include/pbseq/hdf/BufferedHDF2DArray.hpp:75:9: note: by ‘int BufferedHDF2DArray::Initialize(HDFGroup&, std::string, DSLength, int, bool) [with T = char; std::string = std::__cxx11::basic_string; DSLength = long unsigned int]’ 75 | int Initialize(HDFGroup &group, std::string datasetName, DSLength _rowLength = 0, | ^~~~~~~~~~ In file included from ../iblasr/BlasrMiscs.hpp:56, from ../iblasr/BlasrAlign.hpp:5: ../iblasr/BlasrMiscsImpl.hpp: In function ‘void MakeSubreadIntervals(std::vector&, std::vector&)’: ../iblasr/BlasrMiscsImpl.hpp:136:25: warning: implicitly-declared ‘SMRTSequence::SMRTSequence(const SMRTSequence&)’ is deprecated [-Wdeprecated-copy] 136 | for (auto subread : subreads) { | ^~~~~~~~ In file included from /usr/include/pbseq/pbdata/CCSSequence.hpp:5, from /usr/include/pbseq/alignment/files/CCSIterator.hpp:4, from ../iblasr/BlasrHeaders.h:57: /usr/include/pbseq/pbdata/SMRTSequence.hpp:171:19: note: because ‘SMRTSequence’ has user-provided ‘SMRTSequence& SMRTSequence::operator=(const SMRTSequence&)’ 171 | SMRTSequence &operator=(const SMRTSequence &rhs); | ^~~~~~~~ In file included from ../iblasr/MappingIPC.h:5, from ../iblasr/BlasrHeaders.h:99: ../iblasr/MappingParameters.h: In copy constructor ‘MappingParameters::MappingParameters(const MappingParameters&)’: ../iblasr/MappingParameters.h:19:7: warning: implicitly-declared ‘constexpr AnchorParameters::AnchorParameters(const AnchorParameters&)’ is deprecated [-Wdeprecated-copy] 19 | class MappingParameters | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/algorithms/anchoring/BWTSearch.hpp:7, from ../iblasr/BlasrHeaders.h:42: /usr/include/pbseq/alignment/datastructures/anchoring/AnchorParameters.hpp:33:23: note: because ‘AnchorParameters’ has user-provided ‘AnchorParameters& AnchorParameters::operator=(const AnchorParameters&)’ 33 | AnchorParameters &operator=(const AnchorParameters &rhs); | ^~~~~~~~ ../Blasr.cpp: In function ‘void MapReadsNonCCS(MappingData >, FASTASequence, DNATuple>*, MappingBuffers&, SMRTSequence&, SMRTSequence&, std::vector&, MappingParameters&, const int&, ReadAlignments&, std::ofstream&)’: ../Blasr.cpp:382:49: note: synthesized method ‘MappingParameters::MappingParameters(const MappingParameters&)’ first required here 382 | MappingParameters sensitiveParams = params; | ^~~~~~ ../Blasr.cpp: In function ‘int main(int, char**)’: ../Blasr.cpp:1407:32: warning: cast between incompatible function types from ‘void (*)(MappingData >, FASTASequence, DNATuple>*)’ to ‘void* (*)(void*)’ [-Wcast-function-type] 1407 | (void *(*)(void *))MapReads, &mapdb[procIndex]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/pbseq/alignment/format/BAMPrinter.hpp:29, from ../iblasr/BlasrHeaders.h:60: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp: In instantiation of ‘void AlignmentToBamRecord(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::BamRecord&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:170:25: required from ‘void BAMOutput::PrintAlignment(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::IRecordWriter&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:951:38: required from here /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:30:45: warning: the compiler can assume that the address of ‘read’ will never be NULL [-Waddress] 30 | if (dynamic_cast(&read) == NULL) { | ^ /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:19:72: note: ‘read’ declared here 19 | void AlignmentToBamRecord(T_AlignmentCandidate &alignment, T_Sequence &read, T_Sequence &subread, | ~~~~~~~~~~~~^~~~ In file included from /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtils.hpp:7, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:11, from /usr/include/pbseq/alignment/algorithms/alignment/AffineGuidedAlign.hpp:4, from ../iblasr/BlasrHeaders.h:30: /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp: In instantiation of ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment]’: /usr/include/c++/13/bits/alloc_traits.h:538:17: required from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = blasr::CompSeqAlignment; _Args = {const blasr::CompSeqAlignment&}; _Tp = blasr::CompSeqAlignment; allocator_type = std::allocator]’ /usr/include/c++/13/bits/stl_vector.h:1283:30: required from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = blasr::CompSeqAlignment; _Alloc = std::allocator; value_type = blasr::CompSeqAlignment]’ /usr/include/pbseq/alignment/algorithms/alignment/AlignmentUtilsImpl.hpp:112:29: required from here /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: warning: implicitly-declared ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ is deprecated [-Wdeprecated-copy] 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:103:16: note: because ‘blasr::Alignment’ has user-provided ‘blasr::Alignment& blasr::Alignment::operator=(const blasr::Alignment&)’ 103 | Alignment &operator=(const Alignment &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:58:7: warning: implicitly-declared ‘constexpr blasr::AlignmentStats::AlignmentStats(const blasr::AlignmentStats&)’ is deprecated [-Wdeprecated-copy] 58 | class Alignment : public AlignmentStats | ^~~~~~~~~ In file included from /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:8: /usr/include/pbseq/alignment/datastructures/alignment/AlignmentStats.hpp:19:21: note: because ‘blasr::AlignmentStats’ has user-provided ‘blasr::AlignmentStats& blasr::AlignmentStats::operator=(const blasr::AlignmentStats&)’ 19 | AlignmentStats &operator=(const AlignmentStats &rhs); | ^~~~~~~~ /usr/include/pbseq/alignment/datastructures/alignment/Alignment.hpp:209:7: note: synthesized method ‘blasr::Alignment::Alignment(const blasr::Alignment&)’ first required here 209 | class CompSeqAlignment : public Alignment | ^~~~~~~~~~~~~~~~ In file included from /usr/include/riscv64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from ../iblasr/BlasrHeaders.h:10: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method ‘blasr::CompSeqAlignment::CompSeqAlignment(const blasr::CompSeqAlignment&)’ first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgrammingImpl.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/sdp/SparseDynamicProgramming.hpp:35, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlignImpl.hpp:18, from /usr/include/pbseq/alignment/algorithms/alignment/SDPAlign.hpp:44, from /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:13: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:512:23: required from ‘int GuidedAlign(QSequence&, TSequence&, T_ScoreFn&, int, int, int, float, T_BufferCache&, blasr::Alignment&, AlignmentType, bool, int) [with QSequence = SMRTSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrAlignImpl.hpp:1449:20: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 97 | assert(matrixNElem >= 0); | ~~~~~~~~~~~~^~~~ In file included from /usr/include/c++/13/cassert:44, from /usr/include/pbseq/alignment/statistics/StatUtils.hpp:5, from /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:12, from /usr/include/pbseq/alignment/algorithms/alignment/AffineKBandAlign.hpp:9, from ../iblasr/BlasrHeaders.h:31: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = SMRTSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = SMRTSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrUtilsImpl.hpp:639:19: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = IDSScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrUtilsImpl.hpp:689:32: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 97 | assert(matrixNElem >= 0); | ~~~~~~~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp: In instantiation of ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, blasr::Alignment&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = DistanceMatrixScoreFunction]’: /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:526:23: required from ‘int GuidedAlign(QSequence&, TSequence&, blasr::Alignment&, T_ScoreFn&, int, T_BufferCache&, blasr::Alignment&, AlignmentType, bool) [with QSequence = FASTQSequence; TSequence = DNASequence; T_ScoreFn = DistanceMatrixScoreFunction; T_BufferCache = MappingBuffers]’ ../iblasr/BlasrUtilsImpl.hpp:698:32: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/GuidedAlign.hpp:97:24: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] /usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp: In instantiation of ‘int OneGapAlign(T_QuerySequence&, T_RefSequence&, T_ScoreFunction&, T_BufferList&, blasr::Alignment&) [with T_QuerySequence = FASTQSequence; T_RefSequence = DNASequence; T_ScoreFunction = DistanceMatrixScoreFunction; T_BufferList = MappingBuffers]’: ../iblasr/BlasrAlignImpl.hpp:918:40: required from ‘void AlignIntervals(T_TargetSequence&, T_QuerySequence&, T_QuerySequence&, WeightedIntervalSet&, int (*)[5], int, int, int, int, SequenceIndexDatabase&, std::vector*>&, MappingParameters&, MappingBuffers&, int) [with T_TargetSequence = FASTASequence; T_QuerySequence = SMRTSequence; TDBSequence = FASTQSequence]’ ../iblasr/BlasrAlignImpl.hpp:280:23: required from ‘void MapRead(T_Sequence&, T_Sequence&, T_RefSequence&, T_SuffixArray&, BWT&, SeqBoundaryFtr&, T_TupleCountTable&, SequenceIndexDatabase&, MappingParameters&, MappingMetrics&, std::vector*>&, MappingBuffers&, MappingIPC*, MappingSemaphores&) [with T_Sequence = SMRTSequence; T_RefSequence = FASTASequence; T_SuffixArray = SuffixArray >; T_TupleCountTable = TupleCountTable; BWT = Bwt; MappingIPC = MappingData >, FASTASequence, DNATuple>]’ ../Blasr.cpp:347:16: required from here /usr/include/pbseq/alignment/algorithms/alignment/OneGapAlignment.hpp:337:40: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 337 | assert(distanceBetweenLeftAndRight >= 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = IDSScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrAlignImpl.hpp:1301:38: required from ‘void PairwiseLocalAlign(T_Sequence&, T_RefSequence&, int, MappingParameters&, T_AlignmentCandidate&, MappingBuffers&, AlignmentType) [with T_RefSequence = DNASequence; T_Sequence = FASTQSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:873:27: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp: In instantiation of ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, AlignmentType, T_ScoreFn&, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = QualityValueScoreFunction; DNALength = unsigned int]’: /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:30:22: required from ‘int KBandAlign(T_QuerySequence&, T_TargetSequence&, int (*)[5], int, int, DNALength, std::vector&, std::vector&, T_Alignment&, T_ScoreFn&, AlignmentType, bool) [with T_QuerySequence = FASTQSequence; T_TargetSequence = DNASequence; T_Alignment = AlignmentCandidate; T_ScoreFn = QualityValueScoreFunction; DNALength = unsigned int]’ ../iblasr/BlasrAlignImpl.hpp:1310:38: required from ‘void PairwiseLocalAlign(T_Sequence&, T_RefSequence&, int, MappingParameters&, T_AlignmentCandidate&, MappingBuffers&, AlignmentType) [with T_RefSequence = DNASequence; T_Sequence = FASTQSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrUtilsImpl.hpp:873:27: required from ‘void RefineAlignment(std::vector&, T_RefSequence&, T_AlignmentCandidate&, MappingParameters&, MappingBuffers&) [with T_RefSequence = DNASequence; T_Sequence = SMRTSequence; T_AlignmentCandidate = AlignmentCandidate]’ ../iblasr/BlasrAlignImpl.hpp:1555:32: required from here /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:151:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 151 | assert(t - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/algorithms/alignment/KBandAlign.hpp:152:26: warning: comparison of unsigned expression in ‘>= 0’ is always true [-Wtype-limits] 152 | assert(q - 1 >= 0); | ~~~~~~^~~~ /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp: In function ‘void AlignmentToBamRecord(T_AlignmentCandidate&, T_Sequence&, T_Sequence&, PacBio::BAM::BamRecord&, AlignmentContext&, SupplementalQVList&, SAMOutput::Clipping, bool, bool) [with T_Sequence = SMRTSequence]’: /usr/include/pbseq/alignment/format/BAMPrinterImpl.hpp:30:5: warning: ‘nonnull’ argument ‘read’ compared to NULL [-Wnonnull-compare] 30 | if (dynamic_cast(&read) == NULL) { | ^~ [25/25] c++ -o blasr blasr.p/Blasr.cpp.o -L/usr/lib/riscv64-linux-gnu -L/usr/lib/riscv64-linux-gnu/hdf5/serial -I/usr/include/pbseq -Wl,--as-needed -Wl,--no-undefined -Wl,--start-group -lhdf5_cpp -lhdf5 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=3 -g -O2 -fno-omit-frame-pointer -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fno-stack-clash-protection -fdebug-prefix-map=/<>=/usr/src/blasr-5.3.5+dfsg-6build5 -DHAVE_HDF5_1_10_1 -isystem /usr/include/hdf5/serial libblasr_impl.a -pthread -lpbbam /usr/lib/riscv64-linux-gnu/libblasr.so /usr/lib/riscv64-linux-gnu/libpbbam.so /usr/lib/riscv64-linux-gnu/libpbcopper.so -lpbcopper /usr/lib/riscv64-linux-gnu/libz.so /usr/lib/riscv64-linux-gnu/libhts.so -lpbbam -lpbcopper -Wl,--end-group dh: command-omitted: The call to "dh_auto_test -a -O--buildsystem=meson" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=meson dh_prep -a -O--buildsystem=meson dh_auto_install --destdir=debian/blasr/ -a -O--buildsystem=meson cd obj-riscv64-linux-gnu && DESTDIR=/<>/blasr-5.3.5\+dfsg/debian/blasr LC_ALL=C.UTF-8 ninja install [1/4] Generating BlasrGitHash.h with a custom command [1/2] Installing files. Installing blasr to /<>/debian/blasr/usr/bin Installing sawriter to /<>/debian/blasr/usr/bin dh_install -a -O--buildsystem=meson dh_installdocs -a -O--buildsystem=meson dh_installchangelogs -a -O--buildsystem=meson dh_installexamples -a -O--buildsystem=meson dh_installman -a -O--buildsystem=meson dh_installsystemduser -a -O--buildsystem=meson dh_lintian -a -O--buildsystem=meson dh_perl -a -O--buildsystem=meson dh_link -a -O--buildsystem=meson dh_strip_nondeterminism -a -O--buildsystem=meson dh_compress -a -O--buildsystem=meson dh_fixperms -a -O--buildsystem=meson dh_missing -a -O--buildsystem=meson dh_dwz -a -O--buildsystem=meson dh_strip -a -O--buildsystem=meson debugedit: debian/blasr/usr/bin/sawriter: Unknown DWARF DW_FORM_0x1f20 58acb7380e0cfb2139b550f7c2ecd48478e80444 debugedit: debian/blasr/usr/bin/blasr: Unknown DWARF DW_FORM_0x1f21 0e15128d6060806865a34f358f10cbb12eeb7b1f dh_makeshlibs -a -O--buildsystem=meson dh_shlibdeps -a -O--buildsystem=meson dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a -O--buildsystem=meson dh_gencontrol -a -O--buildsystem=meson dh_md5sums -a -O--buildsystem=meson dh_builddeb -a -O--buildsystem=meson INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing blasr (in debian/blasr); do_strip: , oemstrip: pkgstriptranslations: processing blasr-dbgsym (in debian/.debhelper/blasr/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/blasr/DEBIAN/control, package blasr, directory debian/blasr pkgstripfiles: processing control file: debian/.debhelper/blasr/dbgsym-root/DEBIAN/control, package blasr-dbgsym, directory debian/.debhelper/blasr/dbgsym-root dpkg-deb: building package 'blasr-dbgsym' in 'debian/.debhelper/scratch-space/build-blasr/blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package blasr ... pkgstripfiles: No PNG files. dpkg-deb: building package 'blasr' in '../blasr_5.3.5+dfsg-6build5_riscv64.deb'. Renaming blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.deb to blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.ddeb dpkg-genbuildinfo --build=any -O../blasr_5.3.5+dfsg-6build5_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../blasr_5.3.5+dfsg-6build5_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-14T17:31:15Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ blasr_5.3.5+dfsg-6build5_riscv64.changes: ----------------------------------------- Format: 1.8 Date: Sun, 14 Apr 2024 17:59:22 +0100 Source: blasr Binary: blasr Built-For-Profiles: noudeb Architecture: riscv64 Version: 5.3.5+dfsg-6build5 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Colin Watson Description: blasr - mapping single-molecule sequencing reads Changes: blasr (5.3.5+dfsg-6build5) noble; urgency=medium . * No-change rebuild against libhdf5-cpp-103-1t64. Checksums-Sha1: d5fef3b178e6e20ac0e35988aedbd541d5e9d769 2625450 blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.ddeb f87058ca952e5fb43be398a1e1f20b584a3fd228 9124 blasr_5.3.5+dfsg-6build5_riscv64.buildinfo 1c711ed8e247d3b3dccee99f71d2eddacda95761 244152 blasr_5.3.5+dfsg-6build5_riscv64.deb Checksums-Sha256: 2b969f38445847eb8a585d33669b0a3b77bc2188e9024ccf7f00545be9c75885 2625450 blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.ddeb fc1129c0c651d0718d993ab58b1953f4ac682fe822bd6ae59508d595666dffa7 9124 blasr_5.3.5+dfsg-6build5_riscv64.buildinfo 40738a9331efcced448884bf93fcb951ddde2c8f9efd6ad107c3fabc37aa99ea 244152 blasr_5.3.5+dfsg-6build5_riscv64.deb Files: e2481c6920120f03a07cbb1ad94ba873 2625450 debug optional blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.ddeb 4973e4abe92b07cd60dd031d00bd3199 9124 science optional blasr_5.3.5+dfsg-6build5_riscv64.buildinfo 34f36d3e521159e78081c62bbbb60c6e 244152 science optional blasr_5.3.5+dfsg-6build5_riscv64.deb /<>/blasr_5.3.5+dfsg-6build5_riscv64.changes.new could not be renamed to /<>/blasr_5.3.5+dfsg-6build5_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: blasr Binary: blasr blasr-dbgsym Architecture: riscv64 Version: 5.3.5+dfsg-6build5 Checksums-Md5: e2481c6920120f03a07cbb1ad94ba873 2625450 blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.ddeb 34f36d3e521159e78081c62bbbb60c6e 244152 blasr_5.3.5+dfsg-6build5_riscv64.deb Checksums-Sha1: d5fef3b178e6e20ac0e35988aedbd541d5e9d769 2625450 blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.ddeb 1c711ed8e247d3b3dccee99f71d2eddacda95761 244152 blasr_5.3.5+dfsg-6build5_riscv64.deb Checksums-Sha256: 2b969f38445847eb8a585d33669b0a3b77bc2188e9024ccf7f00545be9c75885 2625450 blasr-dbgsym_5.3.5+dfsg-6build5_riscv64.ddeb 40738a9331efcced448884bf93fcb951ddde2c8f9efd6ad107c3fabc37aa99ea 244152 blasr_5.3.5+dfsg-6build5_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sun, 14 Apr 2024 17:31:10 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3ubuntu1), autopoint (= 0.21-14ubuntu2), autotools-dev (= 20220109.1), base-files (= 13ubuntu9), base-passwd (= 3.6.3build1), bash (= 5.2.21-2ubuntu4), binutils (= 2.42-4ubuntu2), binutils-common (= 2.42-4ubuntu2), binutils-riscv64-linux-gnu (= 2.42-4ubuntu2), bsdextrautils (= 2.39.3-9ubuntu6), bsdutils (= 1:2.39.3-9ubuntu6), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5.1), cmake (= 3.28.3-1build6), cmake-data (= 3.28.3-1build6), coreutils (= 9.4-3ubuntu6), cpp (= 4:13.2.0-7ubuntu1), cpp-13 (= 13.2.0-23ubuntu3), cpp-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), cpp-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), dash (= 0.5.12-6ubuntu5), debconf (= 1.5.86ubuntu1), debhelper (= 13.14.1ubuntu5), debianutils (= 5.17build1), debugedit (= 1:5.0-5build2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1build1), dpkg (= 1.22.6ubuntu6), dpkg-dev (= 1.22.6ubuntu6), dwz (= 0.15-1build6), file (= 1:5.45-3build1), findutils (= 4.9.0-5build1), g++ (= 4:13.2.0-7ubuntu1), g++-13 (= 13.2.0-23ubuntu3), g++-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), g++-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), gcc (= 4:13.2.0-7ubuntu1), gcc-13 (= 13.2.0-23ubuntu3), gcc-13-base (= 13.2.0-23ubuntu3), gcc-13-riscv64-linux-gnu (= 13.2.0-23ubuntu3), gcc-14-base (= 14-20240330-1ubuntu2), gcc-riscv64-linux-gnu (= 4:13.2.0-7ubuntu1), gettext (= 0.21-14ubuntu2), gettext-base (= 0.21-14ubuntu2), googletest (= 1.14.0-1), grep (= 3.11-4build1), groff-base (= 1.23.0-3build2), gzip (= 1.12-1ubuntu3), hdf5-helpers (= 1.10.10+repack-3.1ubuntu4), hostname (= 3.23+nmu2ubuntu2), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1build1), libaec-dev (= 1.1.2-1), libaec0 (= 1.1.2-1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.2-2), libasan8 (= 14-20240330-1ubuntu2), libatomic1 (= 14-20240330-1ubuntu2), libattr1 (= 1:2.5.2-1build1), libaudit-common (= 1:3.1.2-2.1build1), libaudit1 (= 1:3.1.2-2.1build1), libbinutils (= 2.42-4ubuntu2), libblasr-dev (= 5.3.5+dfsg-6build5), libblasr5.3.5 (= 5.3.5+dfsg-6build5), libblkid1 (= 2.39.3-9ubuntu6), libboost-dev (= 1.83.0.1ubuntu2), libboost1.83-dev (= 1.83.0-2.1ubuntu3), libbrotli1 (= 1.1.0-2build2), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.39-0ubuntu8), libc-dev-bin (= 2.39-0ubuntu8), libc6 (= 2.39-0ubuntu8), libc6-dev (= 2.39-0ubuntu8), libcap-ng0 (= 0.8.4-2build2), libcap2 (= 1:2.66-5ubuntu2), libcc1-0 (= 14-20240330-1ubuntu2), libcom-err2 (= 1.47.0-2.4~exp1ubuntu4), libcrypt-dev (= 1:4.4.36-4build1), libcrypt1 (= 1:4.4.36-4build1), libctf-nobfd0 (= 2.42-4ubuntu2), libctf0 (= 2.42-4ubuntu2), libcurl3t64-gnutls (= 8.5.0-2ubuntu10), libcurl4-gnutls-dev (= 8.5.0-2ubuntu10), libcurl4t64 (= 8.5.0-2ubuntu10), libdb5.3t64 (= 5.3.28+dfsg2-7), libdebconfclient0 (= 0.271ubuntu3), libdebhelper-perl (= 13.14.1ubuntu5), libdeflate-dev (= 1.19-1build1), libdeflate0 (= 1.19-1build1), libdpkg-perl (= 1.22.6ubuntu6), libdw1t64 (= 0.190-1.1build4), libelf1t64 (= 0.190-1.1build4), libexpat1 (= 2.6.1-2build1), libffi8 (= 3.4.6-1build1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23ubuntu3), libgcc-s1 (= 14-20240330-1ubuntu2), libgcrypt20 (= 1.10.3-2build1), libgdbm-compat4t64 (= 1.23-5.1build1), libgdbm6t64 (= 1.23-5.1build1), libgfortran5 (= 14-20240330-1ubuntu2), libgmp10 (= 2:6.3.0+dfsg-2ubuntu6), libgnutls30t64 (= 3.8.3-1.1ubuntu3), libgomp1 (= 14-20240330-1ubuntu2), libgpg-error0 (= 1.47-3build2), libgssapi-krb5-2 (= 1.20.1-6ubuntu2), libgtest-dev (= 1.14.0-1), libhdf5-103-1t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-cpp-103-1t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-dev (= 1.10.10+repack-3.1ubuntu4), libhdf5-fortran-102t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-100t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-cpp-100t64 (= 1.10.10+repack-3.1ubuntu4), libhdf5-hl-fortran-100t64 (= 1.10.10+repack-3.1ubuntu4), libhogweed6t64 (= 3.9.1-2.2build1), libhts-dev (= 1.19+ds-1.1build3), libhts3t64 (= 1.19+ds-1.1build3), libhtscodecs2 (= 1.6.0-1), libicu74 (= 74.2-1ubuntu3), libidn2-0 (= 2.3.7-2build1), libisl23 (= 0.26-3build1), libjansson4 (= 2.14-2build2), libjpeg-dev (= 8c-2ubuntu11), libjpeg-turbo8 (= 2.1.5-2ubuntu2), libjpeg-turbo8-dev (= 2.1.5-2ubuntu2), libjpeg8 (= 8c-2ubuntu11), libjpeg8-dev (= 8c-2ubuntu11), libjsoncpp25 (= 1.9.5-6build1), libk5crypto3 (= 1.20.1-6ubuntu2), libkeyutils1 (= 1.6.3-3build1), libkrb5-3 (= 1.20.1-6ubuntu2), libkrb5support0 (= 1.20.1-6ubuntu2), libldap2 (= 2.6.7+dfsg-1~exp1ubuntu8), liblz4-1 (= 1.9.4-1build1), liblzma-dev (= 5.6.1+really5.4.5-1), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3build1), libmagic1t64 (= 1:5.45-3build1), libmd0 (= 1.1.0-2build1), libmount1 (= 2.39.3-9ubuntu6), libmpc3 (= 1.3.1-1build1), libmpfr6 (= 4.2.1-1build1), libncursesw6 (= 6.4+20240113-1ubuntu2), libnettle8t64 (= 3.9.1-2.2build1), libnghttp2-14 (= 1.59.0-1build2), libp11-kit0 (= 0.25.3-4ubuntu2), libpam-modules (= 1.5.3-5ubuntu5), libpam-modules-bin (= 1.5.3-5ubuntu5), libpam-runtime (= 1.5.3-5ubuntu5), libpam0g (= 1.5.3-5ubuntu5), libpbbam-dev (= 2.4.0+dfsg-1build1), libpbbam2.4.0 (= 2.4.0+dfsg-1build1), libpbcopper-dev (= 2.3.0+dfsg-2), libpbcopper2.3.0 (= 2.3.0+dfsg-2), libpbdata-dev (= 5.3.5+dfsg-6build5), libpbihdf-dev (= 5.3.5+dfsg-6build5), libpbseq-dev (= 5.3.5+dfsg-6build5), libpcre2-8-0 (= 10.42-4ubuntu2), libperl5.38t64 (= 5.38.2-3.2build2), libpipeline1 (= 1.5.7-2), libpkgconf3 (= 1.8.1-2build1), libproc2-0 (= 2:4.0.4-4ubuntu3), libpsl5t64 (= 0.21.2-1.1build1), libpython3-stdlib (= 3.12.3-0ubuntu1), libpython3.12-minimal (= 3.12.3-1), libpython3.12-stdlib (= 3.12.3-1), libreadline8t64 (= 8.2-4build1), librhash0 (= 1.4.3-3build1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build7), libsasl2-2 (= 2.1.28+dfsg1-5ubuntu3), libsasl2-modules-db (= 2.1.28+dfsg1-5ubuntu3), libselinux1 (= 3.5-2ubuntu2), libsframe1 (= 2.42-4ubuntu2), libsmartcols1 (= 2.39.3-9ubuntu6), libsqlite3-0 (= 3.45.1-1ubuntu2), libssh-4 (= 0.10.6-2build2), libssl-dev (= 3.0.13-0ubuntu3), libssl3t64 (= 3.0.13-0ubuntu3), libstdc++-13-dev (= 13.2.0-23ubuntu3), libstdc++6 (= 14-20240330-1ubuntu2), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1ubuntu7), libsz2 (= 1.1.2-1), libtasn1-6 (= 4.19.0-3build1), libtinfo6 (= 6.4+20240113-1ubuntu2), libtool (= 2.4.7-7build1), libubsan1 (= 14-20240330-1ubuntu2), libuchardet0 (= 0.0.8-1build1), libudev1 (= 255.4-1ubuntu7), libunistring5 (= 1.1-2build1), libuuid1 (= 2.39.3-9ubuntu6), libuv1t64 (= 1.48.0-1.1build1), libxml2 (= 2.9.14+dfsg-1.3ubuntu3), libzstd1 (= 1.5.5+dfsg2-2build1), linux-libc-dev (= 6.8.0-22.22), login (= 1:4.13+dfsg1-4ubuntu3), lto-disabled-list (= 47), m4 (= 1.4.19-4build1), make (= 4.3-4.1build2), man-db (= 2.12.0-4build2), mawk (= 1.3.4.20240123-1build1), media-types (= 10.1.0), meson (= 1.3.2-1ubuntu1), ncurses-base (= 6.4+20240113-1ubuntu2), ncurses-bin (= 6.4+20240113-1ubuntu2), netbase (= 6.4), ninja-build (= 1.11.1-2), patch (= 2.7.6-7build3), perl (= 5.38.2-3.2build2), perl-base (= 5.38.2-3.2build2), perl-modules-5.38 (= 5.38.2-3.2build2), pkg-config (= 1.8.1-2build1), pkgconf (= 1.8.1-2build1), pkgconf-bin (= 1.8.1-2build1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4ubuntu3), python3 (= 3.12.3-0ubuntu1), python3-minimal (= 3.12.3-0ubuntu1), python3-pkg-resources (= 68.1.2-2ubuntu1), python3-setuptools (= 68.1.2-2ubuntu1), python3.12 (= 3.12.3-1), python3.12-minimal (= 3.12.3-1), readline-common (= 8.2-4build1), rpcsvc-proto (= 1.4.2-0ubuntu7), sed (= 4.9-2build1), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-6ubuntu3), tar (= 1.35+dfsg-3build1), tzdata (= 2024a-2ubuntu1), util-linux (= 2.39.3-9ubuntu6), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1ubuntu2), zlib1g-dev (= 1:1.3.dfsg-3.1ubuntu2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1713113962" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ blasr_5.3.5+dfsg-6build5_riscv64.deb ------------------------------------ new Debian package, version 2.0. size 244152 bytes: control archive=1112 bytes. 898 bytes, 15 lines control 913 bytes, 14 lines md5sums Package: blasr Version: 5.3.5+dfsg-6build5 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 552 Depends: libblasr5.3.5 (>= 5.3.5+dfsg), libc6 (>= 2.38), libgcc-s1 (>= 3.4), libhdf5-cpp-103-1t64 (>= 1.10.5), libpbbam2.4.0 (>= 2.4.0+dfsg), libpbcopper2.3.0 (>= 2.3.0+dfsg), libstdc++6 (>= 13.1), libpbseq (>= 5.3.5+dfsg-4~) Section: science Priority: optional Homepage: https://github.com/PacificBiosciences/blasr Description: mapping single-molecule sequencing reads Basic local alignment with successive refinement (BLASR) is a method for mapping single-molecule sequencing reads against a reference genome. Such reads are thousands of bases long, with divergence between them and the genome being dominated by insertion and deletion error. drwxr-xr-x root/root 0 2024-04-14 16:59 ./ drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/ drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/bin/ -rwxr-xr-x root/root 485856 2024-04-14 16:59 ./usr/bin/blasr -rwxr-xr-x root/root 47456 2024-04-14 16:59 ./usr/bin/sawriter drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/share/ drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/share/doc/blasr/ -rw-r--r-- root/root 1291 2021-02-18 10:03 ./usr/share/doc/blasr/README.md -rw-r--r-- root/root 208 2022-12-05 19:49 ./usr/share/doc/blasr/README.source -rw-r--r-- root/root 542 2022-12-05 19:49 ./usr/share/doc/blasr/README.test -rw-r--r-- root/root 41 2022-12-05 19:49 ./usr/share/doc/blasr/TODO.Debian -rw-r--r-- root/root 1639 2024-04-14 16:59 ./usr/share/doc/blasr/changelog.Debian.gz -rw-r--r-- root/root 2196 2022-12-05 19:49 ./usr/share/doc/blasr/copyright drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/share/doc/blasr/examples/ -rw-r--r-- root/root 65 2022-12-05 19:49 ./usr/share/doc/blasr/examples/query.fasta -rw-r--r-- root/root 72 2022-12-05 19:49 ./usr/share/doc/blasr/examples/ref.fa -rw-r--r-- root/root 1067 2022-12-05 19:49 ./usr/share/doc/blasr/run-unit-test drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 163 2022-12-05 19:49 ./usr/share/lintian/overrides/blasr drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-14 16:59 ./usr/share/man/man1/ -rw-r--r-- root/root 1369 2024-04-14 16:59 ./usr/share/man/man1/blasr.1.gz -rw-r--r-- root/root 872 2024-04-14 16:59 ./usr/share/man/man1/sawriter.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 123028 Build-Time: 715 Distribution: noble-proposed Host Architecture: riscv64 Install-Time: 265 Job: blasr_5.3.5+dfsg-6build5.dsc Machine Architecture: riscv64 Package: blasr Package-Time: 1002 Source-Version: 5.3.5+dfsg-6build5 Space: 123028 Status: successful Version: 5.3.5+dfsg-6build5 -------------------------------------------------------------------------------- Finished at 2024-04-14T17:31:15Z Build needed 00:16:42, 123028k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=riscv64 PACKAGEBUILD-28055381 Scanning for processes to kill in build PACKAGEBUILD-28055381