https://launchpad.net/ubuntu/+source/blimps/3.9+ds-1/+build/16264982 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-037 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 11 Jan 20:56:44 ntpdate[1819]: adjust time server 10.211.37.1 offset 0.036527 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16264982 /home/buildd/filecache-default/a8e076447bc9c859868a26138221e631724b6c90 Creating target for build PACKAGEBUILD-16264982 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16264982 Starting target for build PACKAGEBUILD-16264982 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16264982 'deb http://ftpmaster.internal/ubuntu disco main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu disco-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu disco-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu disco-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-16264982 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16264982 Updating target for build PACKAGEBUILD-16264982 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf Packages [960 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe armhf Packages [8654 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5177 kB] Get:9 http://ftpmaster.internal/ubuntu disco/multiverse armhf Packages [127 kB] Get:10 http://ftpmaster.internal/ubuntu disco/multiverse Translation-en [113 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main armhf Packages [73.7 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [38.8 kB] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/restricted Translation-en [548 B] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/universe armhf Packages [287 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [175 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/multiverse armhf Packages [8268 B] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/multiverse Translation-en [12.3 kB] Fetched 16.6 MB in 6s (2638 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt binutils binutils-arm-linux-gnueabihf binutils-common cpp-8 dash dpkg dpkg-dev e2fslibs e2fsprogs g++-8 gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libapt-pkg5.0 libasan5 libassuan0 libatomic1 libbinutils libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libgcc-8-dev libgcc1 libgnutls30 libgomp1 libgpg-error0 liblz4-1 libmpfr6 libpng16-16 libsemanage-common libsemanage1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libubsan1 libzstd1 linux-libc-dev sed tar tzdata 50 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 33.3 MB of archives. After this operation, 123 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main armhf tar armhf 1.30+dfsg-4 [218 kB] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf dpkg armhf 1.19.2ubuntu2 [1056 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main armhf dash armhf 0.5.10.2-4 [78.3 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main armhf grep armhf 3.3-1 [138 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main armhf sed armhf 4.7-1 [181 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf init-system-helpers all 1.56+nmu1 [38.2 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf libgnutls30 armhf 3.6.5-2ubuntu1 [700 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libubsan1 armhf 8.2.0-14ubuntu1 [109 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gcc-8-base armhf 8.2.0-14ubuntu1 [18.6 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgcc1 armhf 1:8.2.0-14ubuntu1 [37.0 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgomp1 armhf 8.2.0-14ubuntu1 [66.6 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libatomic1 armhf 8.2.0-14ubuntu1 [7052 B] Get:13 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libasan5 armhf 8.2.0-14ubuntu1 [348 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main armhf cpp-8 armhf 8.2.0-14ubuntu1 [5643 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libcc1-0 armhf 8.2.0-14ubuntu1 [32.5 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main armhf g++-8 armhf 8.2.0-14ubuntu1 [6429 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gcc-8 armhf 8.2.0-14ubuntu1 [6353 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgcc-8-dev armhf 8.2.0-14ubuntu1 [633 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libstdc++-8-dev armhf 8.2.0-14ubuntu1 [1597 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libstdc++6 armhf 8.2.0-14ubuntu1 [349 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf libmpfr6 armhf 4.0.2~rc1-1 [196 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libbinutils armhf 2.31.1-11ubuntu1 [309 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main armhf binutils-common armhf 2.31.1-11ubuntu1 [194 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main armhf binutils armhf 2.31.1-11ubuntu1 [3348 B] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main armhf binutils-arm-linux-gnueabihf armhf 2.31.1-11ubuntu1 [2150 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main armhf liblz4-1 armhf 1.8.3-1ubuntu1 [66.6 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf libzstd1 armhf 1.3.8+dfsg-3 [195 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf libapt-pkg5.0 armhf 1.8.0~alpha3 [732 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libgpg-error0 armhf 1.33-3 [49.3 kB] Get:30 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gpgv armhf 2.2.12-1ubuntu1 [167 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf apt armhf 1.8.0~alpha3 [1113 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf libext2fs2 armhf 1.44.5-1 [145 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf e2fsprogs armhf 1.44.5-1 [492 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main armhf init armhf 1.56+nmu1 [6080 B] Get:35 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage-common all 2.8-2 [7016 B] Get:36 http://ftpmaster.internal/ubuntu disco/main armhf libsemanage1 armhf 2.8-2 [72.7 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main armhf libcom-err2 armhf 1.44.5-1 [8468 B] Get:38 http://ftpmaster.internal/ubuntu disco/main armhf libss2 armhf 1.44.5-1 [9324 B] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libsqlite3-0 armhf 3.26.0+fossilbc891ac6b-1 [449 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main armhf tzdata all 2018i-1 [189 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main armhf libpng16-16 armhf 1.6.36-2 [162 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main armhf dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main armhf libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main armhf e2fslibs armhf 1.44.5-1 [2704 B] Get:45 http://ftpmaster.internal/ubuntu disco/main armhf libassuan0 armhf 2.5.2-1 [28.7 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gpg armhf 2.2.12-1ubuntu1 [415 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gpgconf armhf 2.2.12-1ubuntu1 [105 kB] Get:48 http://ftpmaster.internal/ubuntu disco-proposed/main armhf gpg-agent armhf 2.2.12-1ubuntu1 [190 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main armhf libcomerr2 armhf 1.44.5-1 [2700 B] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main armhf linux-libc-dev armhf 4.19.0-9.10 [1024 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.3 MB in 2s (18.2 MB/s) (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-4_armhf.deb ... Unpacking tar (1.30+dfsg-4) over (1.30+dfsg-3) ... Setting up tar (1.30+dfsg-4) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.2ubuntu2_armhf.deb ... Unpacking dpkg (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Setting up dpkg (1.19.2ubuntu2) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-4_armhf.deb ... Unpacking dash (0.5.10.2-4) over (0.5.10.2-2) ... Setting up dash (0.5.10.2-4) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../archives/grep_3.3-1_armhf.deb ... Unpacking grep (3.3-1) over (3.1-3) ... Setting up grep (3.3-1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../archives/sed_4.7-1_armhf.deb ... Unpacking sed (4.7-1) over (4.5-2) ... Setting up sed (4.7-1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.56+nmu1_all.deb ... Unpacking init-system-helpers (1.56+nmu1) over (1.56) ... Setting up init-system-helpers (1.56+nmu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libgnutls30_3.6.5-2ubuntu1_armhf.deb ... Unpacking libgnutls30:armhf (3.6.5-2ubuntu1) over (3.6.4-2ubuntu2) ... Setting up libgnutls30:armhf (3.6.5-2ubuntu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libubsan1_8.2.0-14ubuntu1_armhf.deb ... Unpacking libubsan1:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../gcc-8-base_8.2.0-14ubuntu1_armhf.deb ... Unpacking gcc-8-base:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Setting up gcc-8-base:armhf (8.2.0-14ubuntu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-14ubuntu1_armhf.deb ... Unpacking libgcc1:armhf (1:8.2.0-14ubuntu1) over (1:8.2.0-12ubuntu1) ... Setting up libgcc1:armhf (1:8.2.0-14ubuntu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../0-libgomp1_8.2.0-14ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../1-libatomic1_8.2.0-14ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../2-libasan5_8.2.0-14ubuntu1_armhf.deb ... Unpacking libasan5:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../3-cpp-8_8.2.0-14ubuntu1_armhf.deb ... Unpacking cpp-8 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../4-libcc1-0_8.2.0-14ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../5-g++-8_8.2.0-14ubuntu1_armhf.deb ... Unpacking g++-8 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../6-gcc-8_8.2.0-14ubuntu1_armhf.deb ... Unpacking gcc-8 (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../7-libgcc-8-dev_8.2.0-14ubuntu1_armhf.deb ... Unpacking libgcc-8-dev:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../8-libstdc++-8-dev_8.2.0-14ubuntu1_armhf.deb ... Unpacking libstdc++-8-dev:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Preparing to unpack .../9-libstdc++6_8.2.0-14ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (8.2.0-14ubuntu1) over (8.2.0-12ubuntu1) ... Setting up libstdc++6:armhf (8.2.0-14ubuntu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../0-libmpfr6_4.0.2~rc1-1_armhf.deb ... Unpacking libmpfr6:armhf (4.0.2~rc1-1) over (4.0.1-2) ... Preparing to unpack .../1-libbinutils_2.31.1-11ubuntu1_armhf.deb ... Unpacking libbinutils:armhf (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../2-binutils-common_2.31.1-11ubuntu1_armhf.deb ... Unpacking binutils-common:armhf (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../3-binutils_2.31.1-11ubuntu1_armhf.deb ... Unpacking binutils (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../4-binutils-arm-linux-gnueabihf_2.31.1-11ubuntu1_armhf.deb ... Unpacking binutils-arm-linux-gnueabihf (2.31.1-11ubuntu1) over (2.31.1-10ubuntu1) ... Preparing to unpack .../5-liblz4-1_1.8.3-1ubuntu1_armhf.deb ... Unpacking liblz4-1:armhf (1.8.3-1ubuntu1) over (1.8.2-1ubuntu1) ... Setting up liblz4-1:armhf (1.8.3-1ubuntu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libzstd1_1.3.8+dfsg-3_armhf.deb ... Unpacking libzstd1:armhf (1.3.8+dfsg-3) over (1.3.5+dfsg-1ubuntu1) ... Setting up libzstd1:armhf (1.3.8+dfsg-3) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.8.0~alpha3_armhf.deb ... Unpacking libapt-pkg5.0:armhf (1.8.0~alpha3) over (1.8.0~alpha2ubuntu1) ... Setting up libapt-pkg5.0:armhf (1.8.0~alpha3) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.33-3_armhf.deb ... Unpacking libgpg-error0:armhf (1.33-3) over (1.32-3) ... Setting up libgpg-error0:armhf (1.33-3) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.12-1ubuntu1_armhf.deb ... Unpacking gpgv (2.2.12-1ubuntu1) over (2.2.8-3ubuntu1) ... Setting up gpgv (2.2.12-1ubuntu1) ... (Reading database ... 12402 files and directories currently installed.) Preparing to unpack .../apt_1.8.0~alpha3_armhf.deb ... Unpacking apt (1.8.0~alpha3) over (1.8.0~alpha2ubuntu1) ... Setting up apt (1.8.0~alpha3) ... (Reading database ... 12401 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.5-1_armhf.deb ... Unpacking libext2fs2:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Setting up libext2fs2:armhf (1.44.5-1) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.44.5-1_armhf.deb ... Unpacking e2fsprogs (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../init_1.56+nmu1_armhf.deb ... Unpacking init (1.56+nmu1) over (1.56) ... Preparing to unpack .../libsemanage-common_2.8-2_all.deb ... Unpacking libsemanage-common (2.8-2) over (2.8-1build2) ... Setting up libsemanage-common (2.8-2) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.8-2_armhf.deb ... Unpacking libsemanage1:armhf (2.8-2) over (2.8-1build2) ... Setting up libsemanage1:armhf (2.8-2) ... (Reading database ... 12400 files and directories currently installed.) Preparing to unpack .../00-libcom-err2_1.44.5-1_armhf.deb ... Unpacking libcom-err2:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../01-libss2_1.44.5-1_armhf.deb ... Unpacking libss2:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../02-libsqlite3-0_3.26.0+fossilbc891ac6b-1_armhf.deb ... Unpacking libsqlite3-0:armhf (3.26.0+fossilbc891ac6b-1) over (3.26.0-2) ... Preparing to unpack .../03-tzdata_2018i-1_all.deb ... Unpacking tzdata (2018i-1) over (2018g-1) ... Preparing to unpack .../04-libpng16-16_1.6.36-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.36-2) over (1.6.34-2) ... Preparing to unpack .../05-dpkg-dev_1.19.2ubuntu2_all.deb ... Unpacking dpkg-dev (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../06-libdpkg-perl_1.19.2ubuntu2_all.deb ... Unpacking libdpkg-perl (1.19.2ubuntu2) over (1.19.2ubuntu1) ... Preparing to unpack .../07-e2fslibs_1.44.5-1_armhf.deb ... Unpacking e2fslibs:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../08-libassuan0_2.5.2-1_armhf.deb ... Unpacking libassuan0:armhf (2.5.2-1) over (2.5.1-2) ... Preparing to unpack .../09-gpg_2.2.12-1ubuntu1_armhf.deb ... Unpacking gpg (2.2.12-1ubuntu1) over (2.2.8-3ubuntu1) ... Preparing to unpack .../10-gpgconf_2.2.12-1ubuntu1_armhf.deb ... Unpacking gpgconf (2.2.12-1ubuntu1) over (2.2.8-3ubuntu1) ... Preparing to unpack .../11-gpg-agent_2.2.12-1ubuntu1_armhf.deb ... Unpacking gpg-agent (2.2.12-1ubuntu1) over (2.2.8-3ubuntu1) ... Preparing to unpack .../12-libcomerr2_1.44.5-1_armhf.deb ... Unpacking libcomerr2:armhf (1.44.5-1) over (1.44.4-2ubuntu1) ... Preparing to unpack .../13-linux-libc-dev_4.19.0-9.10_armhf.deb ... Unpacking linux-libc-dev:armhf (4.19.0-9.10) over (4.18.0-11.12) ... Setting up libcom-err2:armhf (1.44.5-1) ... Setting up libgomp1:armhf (8.2.0-14ubuntu1) ... Setting up libatomic1:armhf (8.2.0-14ubuntu1) ... Setting up libss2:armhf (1.44.5-1) ... Setting up libcc1-0:armhf (8.2.0-14ubuntu1) ... Setting up e2fslibs:armhf (1.44.5-1) ... Setting up libpng16-16:armhf (1.6.36-2) ... Setting up tzdata (2018i-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jan 11 20:57:17 UTC 2019. Universal Time is now: Fri Jan 11 20:57:17 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up init (1.56+nmu1) ... Setting up linux-libc-dev:armhf (4.19.0-9.10) ... Setting up libmpfr6:armhf (4.0.2~rc1-1) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up binutils-common:armhf (2.31.1-11ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:armhf (3.26.0+fossilbc891ac6b-1) ... Setting up libcomerr2:armhf (1.44.5-1) ... Setting up libasan5:armhf (8.2.0-14ubuntu1) ... Setting up libassuan0:armhf (2.5.2-1) ... Setting up libubsan1:armhf (8.2.0-14ubuntu1) ... Setting up cpp-8 (8.2.0-14ubuntu1) ... Setting up libbinutils:armhf (2.31.1-11ubuntu1) ... Setting up gpgconf (2.2.12-1ubuntu1) ... Setting up binutils-arm-linux-gnueabihf (2.31.1-11ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu1) ... Setting up libgcc-8-dev:armhf (8.2.0-14ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up gpg (2.2.12-1ubuntu1) ... Setting up libstdc++-8-dev:armhf (8.2.0-14ubuntu1) ... Setting up gcc-8 (8.2.0-14ubuntu1) ... Setting up g++-8 (8.2.0-14ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16264982 armhf disco-proposed -c chroot:build-PACKAGEBUILD-16264982 --arch=armhf --dist=disco-proposed --nolog blimps_3.9+ds-1.dsc Initiating build PACKAGEBUILD-16264982 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-037.buildd +==============================================================================+ | blimps 3.9+ds-1 (armhf) 11 Jan 2019 20:57 | +==============================================================================+ Package: blimps Version: 3.9+ds-1 Source Version: 3.9+ds-1 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/blimps-OJYcwj/blimps-3.9+ds' with '<>' I: NOTICE: Log filtering will replace 'build/blimps-OJYcwj' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16264982/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- blimps_3.9+ds-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-khiBRv/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-khiBRv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-khiBRv/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-khiBRv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-khiBRv/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-khiBRv/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (120 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-khiBRv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12406 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 12~), d-shlibs (>= 0.84~) Filtered Build-Depends: debhelper (>= 12~), d-shlibs (>= 0.84~) dpkg-deb: building package 'sbuild-build-depends-blimps-dummy' in '/<>/resolver-oPgABt/apt_archive/sbuild-build-depends-blimps-dummy.deb'. Ign:1 copy:/<>/resolver-oPgABt/apt_archive ./ InRelease Get:2 copy:/<>/resolver-oPgABt/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-oPgABt/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-oPgABt/apt_archive ./ Sources [224 B] Get:5 copy:/<>/resolver-oPgABt/apt_archive ./ Packages [543 B] Fetched 2886 B in 0s (124 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install blimps build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu63 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-blimps-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 16.0 MB of archives. After this operation, 58.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-oPgABt/apt_archive ./ sbuild-build-depends-blimps-dummy 0.invalid.0 [872 B] Get:2 http://ftpmaster.internal/ubuntu disco/main armhf libbsd0 armhf 0.9.1-1 [43.1 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main armhf bsdmainutils armhf 11.1.2ubuntu2 [176 kB] Get:4 http://ftpmaster.internal/ubuntu disco/universe armhf libuchardet0 armhf 0.0.6-3 [62.1 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main armhf groff-base armhf 1.22.4-2 [772 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main armhf libpipeline1 armhf 1.5.0-2 [21.5 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main armhf man-db armhf 2.8.5-1 [1068 kB] Get:8 http://ftpmaster.internal/ubuntu disco/main armhf libmagic-mgc armhf 1:5.34-2 [197 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main armhf libmagic1 armhf 1:5.34-2 [65.3 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main armhf file armhf 1:5.34-2 [21.9 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main armhf libelf1 armhf 0.175-2 [41.0 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main armhf libglib2.0-0 armhf 2.58.1-2 [1024 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main armhf libicu63 armhf 63.1-5 [7991 kB] Get:14 http://ftpmaster.internal/ubuntu disco/main armhf libxml2 armhf 2.9.4+dfsg1-7ubuntu3 [533 kB] Get:15 http://ftpmaster.internal/ubuntu disco/main armhf gettext-base armhf 0.19.8.1-9 [46.0 kB] Get:16 http://ftpmaster.internal/ubuntu disco/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:17 http://ftpmaster.internal/ubuntu disco/main armhf m4 armhf 1.4.18-2 [186 kB] Get:18 http://ftpmaster.internal/ubuntu disco/main armhf autoconf all 2.69-11 [322 kB] Get:19 http://ftpmaster.internal/ubuntu disco/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:20 http://ftpmaster.internal/ubuntu disco/main armhf automake all 1:1.16.1-4 [522 kB] Get:21 http://ftpmaster.internal/ubuntu disco/main armhf autopoint all 0.19.8.1-9 [412 kB] Get:22 http://ftpmaster.internal/ubuntu disco/universe armhf d-shlibs all 0.84 [10.5 kB] Get:23 http://ftpmaster.internal/ubuntu disco/main armhf libtool all 2.4.6-6 [195 kB] Get:24 http://ftpmaster.internal/ubuntu disco/main armhf dh-autoreconf all 19 [16.1 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main armhf libarchive-zip-perl all 1.64-1 [84.9 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main armhf libfile-stripnondeterminism-perl all 1.0.0-1 [13.9 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main armhf dh-strip-nondeterminism all 1.0.0-1 [5064 B] Get:28 http://ftpmaster.internal/ubuntu disco/main armhf dwz armhf 0.12-3 [72.1 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main armhf libcroco3 armhf 0.6.12-3 [69.6 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main armhf gettext armhf 0.19.8.1-9 [833 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu disco/main armhf po-debconf all 1.0.21 [233 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main armhf debhelper all 12ubuntu1 [887 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.0 MB in 1s (27.4 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 12406 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-2_armhf.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.0-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-1_armhf.deb ... Unpacking man-db (2.8.5-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.34-2_armhf.deb ... Unpacking libmagic-mgc (1:5.34-2) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../07-libmagic1_1%3a5.34-2_armhf.deb ... Unpacking libmagic1:armhf (1:5.34-2) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.34-2_armhf.deb ... Unpacking file (1:5.34-2) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../09-libelf1_0.175-2_armhf.deb ... Unpacking libelf1:armhf (0.175-2) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../10-libglib2.0-0_2.58.1-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.1-2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../11-libicu63_63.1-5_armhf.deb ... Unpacking libicu63:armhf (63.1-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../12-libxml2_2.9.4+dfsg1-7ubuntu3_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7ubuntu3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../13-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../14-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../20-d-shlibs_0.84_all.deb ... Unpacking d-shlibs (0.84) ... Selecting previously unselected package libtool. Preparing to unpack .../21-libtool_2.4.6-6_all.deb ... Unpacking libtool (2.4.6-6) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../22-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../23-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../24-libfile-stripnondeterminism-perl_1.0.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.0.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../25-dh-strip-nondeterminism_1.0.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.0.0-1) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../27-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_12ubuntu1_all.deb ... Unpacking debhelper (12ubuntu1) ... Selecting previously unselected package sbuild-build-depends-blimps-dummy. Preparing to unpack .../32-sbuild-build-depends-blimps-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-blimps-dummy (0.invalid.0) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libicu63:armhf (63.1-5) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up libelf1:armhf (0.175-2) ... Setting up libglib2.0-0:armhf (2.58.1-2) ... No schema files found: doing nothing. Setting up d-shlibs (0.84) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libpipeline1:armhf (1.5.0-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:armhf (0.9.1-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:armhf (1:5.34-2) ... Setting up libcroco3:armhf (0.6.12-3) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-9) ... Setting up libfile-stripnondeterminism-perl (1.0.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up groff-base (1.22.4-2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libtool (2.4.6-6) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.0.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up sbuild-build-depends-blimps-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic arm64 (armv7l) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-14ubuntu1 gcc-8_8.2.0-14ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-14ubuntu1 libstdc++6_8.2.0-14ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_4.4.18-2ubuntu3 binutils_2.31.1-11ubuntu1 binutils-arm-linux-gnueabihf_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu2 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 coreutils_8.28-1ubuntu2 cpp_4:8.2.0-2ubuntu2 cpp-8_8.2.0-14ubuntu1 d-shlibs_0.84 dash_0.5.10.2-4 debconf_1.5.69 debhelper_12ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.2ubuntu2 dpkg-dev_1.19.2ubuntu2 dwz_0.12-3 e2fslibs_1.44.5-1 e2fsprogs_1.44.5-1 fakeroot_1.23-1 fdisk_2.32-0.1ubuntu2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2ubuntu2 g++-8_8.2.0-14ubuntu1 gcc_4:8.2.0-2ubuntu2 gcc-8_8.2.0-14ubuntu1 gcc-8-base_8.2.0-14ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu1 gpg-agent_2.2.12-1ubuntu1 gpgconf_2.2.12-1ubuntu1 gpgv_2.2.12-1ubuntu1 grep_3.3-1 groff-base_1.22.4-2 gzip_1.6-5ubuntu2 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu10 libapt-pkg5.0_1.8.0~alpha3 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-14ubuntu1 libassuan0_2.5.2-1 libatomic1_8.2.0-14ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libbinutils_2.31.1-11ubuntu1 libblkid1_2.32-0.1ubuntu2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-0ubuntu1 libc-dev-bin_2.28-0ubuntu1 libc6_2.28-0ubuntu1 libc6-dev_2.28-0ubuntu1 libcap-ng0_0.7.9-1build1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-14ubuntu1 libcom-err2_1.44.5-1 libcomerr2_1.44.5-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.0.4-2ubuntu2 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-2 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.32-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-14ubuntu1 libgcc1_1:8.2.0-14ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2 libgdbm6_1.18.1-2 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-14ubuntu1 libgpg-error0_1.33-3 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2~rc1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpng16-16_1.6.36-2 libprocps7_2:3.3.15-2ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu2 libsqlite3-0_3.26.0+fossilbc891ac6b-1 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-14ubuntu1 libstdc++6_8.2.0-14ubuntu1 libsystemd0_239-7ubuntu15 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-6 libubsan1_8.2.0-14ubuntu1 libuchardet0_0.0.6-3 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu2 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu2 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-blimps-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jan 11 13:18:55 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./blimps_3.9+ds-1.dsc dpkg-source: info: extracting blimps in blimps-3.9+ds dpkg-source: info: unpacking blimps_3.9+ds.orig.tar.xz dpkg-source: info: unpacking blimps_3.9+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gets.patch dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying avoid_privacy_breach.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16264982 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16264982 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16264982 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package blimps dpkg-buildpackage: info: source version 3.9+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean make -j4 distclean make[1]: Entering directory '/<>/blimps-3.9+ds' if [ -d blimps ]; then make -C blimps -f Makefile.Linux clean; fi if [ -d protomat ]; then make -C protomat -f Makefile.Linux clean; fi make[2]: Entering directory '/<>/blimps-3.9+ds/protomat' /bin/rm -f *.o blksort getblock getseq multimat motifj motomat uextract blosum blastdat make[2]: Entering directory '/<>/blimps-3.9+ds/blimps' rm -f blimps blweight blalign bldist blk2pssm rank_matrix retblock codehop htmlize-codehop oligo_melt mablock makeblockmap prints2blocks lisblk coduse narrow blkprob blk2slx LAMA find_biassed_blocks fastaseqs addseqs cobbler interpro pssmdist pssmBL papssm matrix_logob makelogob blocks_search LAMA_search block_vis format_block biassed_blocks_finder htmlize-LAMA show_aligned_blocks makelis blk2mot make[2]: Leaving directory '/<>/blimps-3.9+ds/protomat' rm -f *.a *.o *~ if [ "." != "." ]; then rm -f -r .; fi rm -f ./libblimps.so* make[2]: Leaving directory '/<>/blimps-3.9+ds/blimps' rm -f *.[12345678].gz if [ -d "blimps-3.9" ]; then rm -rf blimps-3.9; fi rm -rf \ blimps-3.9 \ blimps-3.9.tar.gz make[1]: Leaving directory '/<>/blimps-3.9+ds' debian/rules override_dh_clean make[1]: Entering directory '/<>/blimps-3.9+ds' dh_clean blimps/deps.mk make[1]: Leaving directory '/<>/blimps-3.9+ds' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/blimps-3.9+ds' make -C blimps -f Makefile.Linux VERSION=3.9 DEBCFLAGS="-g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security" DEBLDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make -C protomat -f Makefile.Linux VERSION=3.9 DEBCFLAGS="-g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security" DEBLDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/blimps-3.9+ds/protomat' gcc -Wall -O2 -c blksort.c make[2]: Entering directory '/<>/blimps-3.9+ds/blimps' /usr/bin/gcc -MM -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic blimps-mem.c blimps.c blweight.c blalign.c bldist.c blk2pssm.c rank_matrix.c retblock.c codehop.c htmlize-codehop.c oligo_melt.c mablock.c cobbler.c addseqs.c fastaseqs.c LAMA.c find_biassed_blocks.c makeblockmap.c prints2blocks.c lisblk.c coduse.c narrow.c blk2slx.c blkprob.c blocks.c config.c convert.c errors.c files.c frequency.c gcode.c lists.c matrix.c memory.c pattern.c scores.c scoring.c sequences.c sl.c strutil.c version.c options.c protomat.c interpro.c pssmdist.c pssmBL.c papssm.c matrix_logob.c makelogob.c blocks_search.c LAMA_search.c block_vis.c format_block.c biassed_blocks_finder.c htmlize-LAMA.c show_aligned_blocks.c blk2mot.c > deps.mk gcc -Wall -O2 -c motmisc.c gcc -Wall -O2 -c getblock.c getblock.c: In function ‘main’: getblock.c:132:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(blkfile); ^~~~ fgets blksort.c: In function ‘main’: motmisc.c: In function ‘pr_num_to_aa’: motmisc.c:181:5: warning: case label value is less than minimum value for type case -1: printf("."); break; ^~~~ blksort.c:242:13: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(homfile); ^~~~ fgets getblock.c:97:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(BlockFam, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blksort.c:184:9: warning: variable ‘db’ set but not used [-Wunused-but-set-variable] char db[FNAMELEN]; ^~ getblock.c: In function ‘get_map’: getblock.c:461:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fmap); ^~~~~~~~~~~~~~~~~~~~~~~~~~ getblock.c: In function ‘get_fasta’: getblock.c:485:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fdat); ^~~~~~~~~~~~~~~~~~~~~~~~~~ getblock.c: In function ‘get_pdb’: motmisc.c: In function ‘dir_unix’: getblock.c:512:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpdb); ^~~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c:574:10: warning: function returns address of local variable [-Wreturn-local-addr] return(pros); ^ motmisc.c: In function ‘extract_seqs’: motmisc.c:838:39: warning: format not a string literal and no format arguments [-Wformat-security] if (out) fprintf(fout, &line[dbs[db]->seq_offset]); ^~~~~~~~~~~~~~~~~~~~~~~~~~ blksort.c: In function ‘print_results’: blksort.c:804:2: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (j=save_nresult; j save_nresult && good_score && ^~ blksort.c:782:28: warning: variable ‘ctemp’ set but not used [-Wunused-but-set-variable] char save_fam[MAXAC+1], ctemp[MAXAC+1]; ^~~~~ motmisc.c:708:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c:857:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] else fgets(line, MAXLINE, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c:859:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] else fgets(line, MAXLINE, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~ blksort.c: In function ‘add_query’: blksort.c:1193:7: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else if (i > Ntiles-1) i = Ntiles-1; ^~~~ blksort.c:1194:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ { ^ blksort.c: In function ‘align_blocks’: blksort.c:1823:15: warning: variable ‘itemp’ set but not used [-Wunused-but-set-variable] int first, itemp; ^~~~~ blksort.c: In function ‘strandcmp’: blksort.c:2052:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1; ^~ blksort.c:2052:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1; ^~ blksort.c: In function ‘mincmp’: blksort.c:2072:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1; ^~ blksort.c:2072:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1; ^~ blksort.c: In function ‘main’: blksort.c:214:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c: In function ‘getscore’: motmisc.c:244:7: warning: ‘fin’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (fin != NULL) ^ In file included from /usr/include/stdio.h:873, from motifj.h:21, from getblock.c:33: In function ‘fgets’, inlined from ‘main’ at getblock.c:97:3: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blksort.c: In function ‘print_blurb’: blksort.c:359:25: warning: ‘blksort.stp’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=] sprintf(fname, "%sblksort.stp", DatDir); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from motifj.h:21, from blksort.c:52: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 12 and 171 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c: In function ‘get_ids’: motmisc.c:623:56: warning: array subscript 40 is above array bounds of ‘char[40]’ [-Warray-bounds] strncpy(new->full_entry, line, len); new->full_entry[len] = '\0'; ~~~~~~~~~~~~~~~^~~~~ gcc -Wall -O2 -c getseq.c blksort.c: In function ‘read_tiles’: blksort.c:579:25: warning: ‘blksort.stn’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=] sprintf(fname, "%sblksort.stn", DatDir); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from motifj.h:21, from blksort.c:52: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 12 and 171 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ getseq.c: In function ‘main’: getseq.c:70:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(seqname); ^~~~ fgets blksort.c: In function ‘read_repeats’: blksort.c:615:25: warning: ‘repeats.dat’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=] sprintf(fname, "%srepeats.dat", DatDir); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from motifj.h:21, from blksort.c:52: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 12 and 171 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blksort.c: In function ‘read_bias’: blksort.c:648:25: warning: ‘blksort.bias’ directive writing 12 bytes into a region of size between 1 and 160 [-Wformat-overflow=] sprintf(fname, "%sblksort.bias", DatDir); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from motifj.h:21, from blksort.c:52: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 172 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Wall -O2 -c multimat.c multimat.c: In function ‘main’: multimat.c:177:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(ctemp); ^~~~ fgets gcc -Wall -O2 -c motifj.c multimat.c: In function ‘add_query’: multimat.c:942:49: warning: variable ‘one’ set but not used [-Wunused-but-set-variable] int i, t, j, imin, nblock, mblock, lastrank, one; ^~~ multimat.c:942:39: warning: variable ‘lastrank’ set but not used [-Wunused-but-set-variable] int i, t, j, imin, nblock, mblock, lastrank, one; ^~~~~~~~ multimat.c: In function ‘closest_seq’: multimat.c:1585:4: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (s1=0; s1 < block->nseq-1; s1++) ^~~ multimat.c:1592:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ return(maxs1); ^~~~~~ multimat.c:1559:8: warning: variable ‘npair’ set but not used [-Wunused-but-set-variable] int npair, s1, s2, l1, l2, i, i1, i2; ^~~~~ blksort.c: In function ‘check_repeats’: blksort.c:1312:27: warning: ‘inew’ may be used uninitialized in this function [-Wmaybe-uninitialized] irep = ifirst - inew + 1; /* # blocks of type ranked so far */ ~~~~~~~^~~~~~ blksort.c:1361:16: warning: ‘width’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (diff <= width || ^ blksort.c:1286:25: warning: ‘lastpath’ may be used uninitialized in this function [-Wmaybe-uninitialized] stemp[i].path = lastpath; ~~~~~~~~~~~~~~^~~~~~~~~~ motifj.c: In function ‘main’: motifj.c:194:6: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(intemp); ^~~~ fgets motifj.c:469:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] (*aa3_obs)[aa2][aa3][d1][d2] >= (unsigned char) Signif ) ^ motifj.c:469:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] (*aa3_obs)[aa2][aa3][d1][d2] >= (unsigned char) Signif ) ^ motifj.c:524:17: warning: array subscript has type ‘char’ [-Wchar-subscripts] (*aa3_obs)[aa2][aa3][d1][d2] = 0; /* Reset scoring matrix to 0 */ ^ motifj.c:524:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] (*aa3_obs)[aa2][aa3][d1][d2] = 0; /* Reset scoring matrix to 0 */ ^ motifj.c: In function ‘cut_motifs’: motifj.c:946:60: warning: variable ‘maxcount’ set but not used [-Wunused-but-set-variable] int seq_list[MAXSEQS], countk, widthk, widthj, mincount, maxcount; ^~~~~~~~ motifj.c:946:50: warning: variable ‘mincount’ set but not used [-Wunused-but-set-variable] int seq_list[MAXSEQS], countk, widthk, widthj, mincount, maxcount; ^~~~~~~~ motifj.c: In function ‘get_count’: motifj.c:1429:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < Len[n]; i++) ^~~ motifj.c:1442:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ if (flag) count++; ^~ motifj.c: In function ‘main’: motifj.c:224:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Title, MAXLINE, bf); ^~~~~~~~~~~~~~~~~~~~~~~~~ motifj.c:263:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Title, MAXLINE, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~ motifj.c: In function ‘getseqs’: motifj.c:1310:20: warning: ‘toolong’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (toolong) i = strlen(line); ^ motifj.c:1316:22: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] Seq[ns][j++] = itemp; ~^~ multimat.c: In function ‘map_blocks’: multimat.c:1365:58: warning: array subscript 20 is above array bounds of ‘char[20]’ [-Warray-bounds] strncpy(ctemp, results[min_t].seq_id, SNAMELEN); ctemp[SNAMELEN] = '\0'; ~~~~~^~~~~~~~~~ blksort.c: In function ‘align_blocks’: blksort.c:1880:26: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(ctemp, "%ld", block->offset[block->nseq-1]+1); ^~~ blksort.c:1880:25: note: directive argument in the range [-2147483647, 2147483647] sprintf(ctemp, "%ld", block->offset[block->nseq-1]+1); ^~~~~ In file included from /usr/include/stdio.h:873, from motifj.h:21, from blksort.c:52: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blksort.c:1936:25: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(ctemp, "%ld", results[t].offset+1); ^~~ blksort.c:1936:24: note: directive argument in the range [-2147483647, 2147483647] sprintf(ctemp, "%ld", results[t].offset+1); ^~~~~ In file included from /usr/include/stdio.h:873, from motifj.h:21, from blksort.c:52: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blksort.c: In function ‘print_results’: blksort.c:814:31: warning: ‘last_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] (nprint < MaxHit || max_score == last_score) ) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blimps.o blimps.c gcc -Wall -O2 -c motomat.c motomat.c: In function ‘main’: motomat.c:169:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(Mot_Filename); ^~~~ fgets gcc -Wall -O2 -c uextract.c motomat.c: In function ‘save_block’: motomat.c:1284:8: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (s=0; s prevsout) ^~ motomat.c: In function ‘pb_weights’: motomat.c:1458:11: warning: variable ‘factor’ set but not used [-Wunused-but-set-variable] double factor, dtemp; ^~~~~~ motomat.c: In function ‘main’: motomat.c:167:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("ls -al *.mot"); ^~~~~~~~~~~~~~~~~~~~~~ motomat.c:186:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Version, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:193:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&RunType, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:194:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Signif, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:195:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Dups, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:196:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Distance, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:197:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&NumSeqs, sizeof(int), 1, mot); /* # sequences */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:198:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Total_Motifs, sizeof(int), 1, mot); /* # motifs */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:204:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(seqs->len, sizeof(int), NumSeqs, mot); /* sequence lengths */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:215:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(seqs->name, SNAMELEN*sizeof(char), NumSeqs, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:218:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(seqs->seq, sizeof(char), seqs->totlen, mot); /* sequences */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:229:27: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] if (!feof(mot)) fread(title, 100*sizeof(char), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:234:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&motif[i].domain, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:235:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&motif[i].freq, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:238:16: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&motif[i].seq_no[j], sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:240:16: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&motif[i].pos[j], sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:254:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(motif, sizeof(struct motif_struct), Total_Motifs, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:255:27: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] if (!feof(mot)) fread(title, MAXLINE*sizeof(char), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ uextract.c: In function ‘main’: uextract.c:133:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lisfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ uextract.c:147:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(infile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ uextract.c:190:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(title, MAXLINE, flis); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ uextract.c:207:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(stemp, MAXLINE, flis); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ uextract.c:321:28: warning: ‘ MOTIFJ=[’ directive writing 9 bytes into a region of size between 1 and 480 [-Wformat-overflow=] sprintf(title, "%s MOTIFJ=[%s,%s,%s,%s];$\n", ^~~~~~~~~ In file included from /usr/include/stdio.h:873, from motifj.h:21, from uextract.c:79: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 510 bytes into a destination of size 480 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Wall -O2 -c blosum.c gcc -Wall -O2 -c blastdat.c blosum.c: In function ‘main’: blosum.c:128:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(datfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blosum.c:142:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blosum.c:151:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blosum.c:168:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blosum.c:211:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blastdat.c: In function ‘main’: blastdat.c:61:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(homfile); ^~~~ fgets blastdat.c: In function ‘read_hom’: blastdat.c:373:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (upper < 0) upper= 0; if (upper > tps-1) upper=tps-1; ^~ blastdat.c:373:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (upper < 0) upper= 0; if (upper > tps-1) upper=tps-1; ^~ blastdat.c:188:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fhom); /* next line is blank */ ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcc blksort.o motmisc.o -lm -o blksort /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blimps-mem.o blimps-mem.c /usr/bin/ld: blksort.o: in function `main': blksort.c:(.text.startup+0x2a4): warning: the `gets' function is dangerous and should not be used. gcc getblock.o motmisc.o -lm -o getblock /usr/bin/ld: getblock.o: in function `main': getblock.c:(.text.startup+0xb8): warning: the `gets' function is dangerous and should not be used. gcc getseq.o motmisc.o -lm -o getseq /usr/bin/ld: getseq.o: in function `main': getseq.c:(.text.startup+0x102): warning: the `gets' function is dangerous and should not be used. /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blocks.o blocks.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o config.o config.c blocks.c: In function ‘read_a_block_faster’: blocks.c:1225:26: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘char (*)[100]’ [-Wformat=] sscanf(Buffer, "%s (%d) %s %s", ~^ &(new_block->sequences[iseq].name), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:1225:34: warning: format ‘%s’ expects argument of type ‘char *’, but argument 5 has type ‘char (*)[80]’ [-Wformat=] sscanf(Buffer, "%s (%d) %s %s", ~^ blocks.c:1228:12: &ctemp, ~~~~~~ blocks.c:1225:37: warning: format ‘%s’ expects argument of type ‘char *’, but argument 6 has type ‘char (*)[20]’ [-Wformat=] sscanf(Buffer, "%s (%d) %s %s", ~^ blocks.c:1229:12: &ctemp2 ); ~~~~~~~ blocks.c: In function ‘read_block_header’: blocks.c:167:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:175:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:210:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:212:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:264:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:266:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:296:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:298:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c: In function ‘next_cluster’: blocks.c:490:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(BlockBuffer, BlockBufLength, bfp); /* read a line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:628:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(BlockBuffer, BlockBufLength, bfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from motifj.h:21, from blosum.c:64: In function ‘fgets’, inlined from ‘main’ at blosum.c:142:7: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘fgets’, inlined from ‘main’ at blosum.c:151:7: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘fgets’, inlined from ‘main’ at blosum.c:168:7: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘fgets’, inlined from ‘main’ at blosum.c:211:7: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc multimat.o motmisc.o -lm -o multimat /usr/bin/ld: multimat.o: in function `main': multimat.c:(.text.startup+0x236): warning: the `gets' function is dangerous and should not be used. gcc motifj.o motmisc.o -lm -o motifj /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convert.o convert.c /usr/bin/ld: motifj.o: in function `shuffle': motifj.c:(.text+0xc1e): warning: the `gets' function is dangerous and should not be used. gcc uextract.o motmisc.o -lm -o uextract gcc blosum.o motmisc.o -lm -o blosum gcc blastdat.o motmisc.o -lm -o blastdat convert.c: In function ‘gribskov_conversion_method’: convert.c:926:16: warning: ‘fp’ is used uninitialized in this function [-Wuninitialized] sij_matrix = load_qij(fp); ^~~~~~~~~~~~ convert.c: In function ‘make_gribs’: convert.c:708:57: warning: iteration 20 invokes undefined behavior [-Waggressive-loop-optimizations] temp[aa] += col->cnt[aa1] * subst->value[aa][aa1]; ~~~~~~~~~~~~~~~~^~~~~ convert.c:706:10: note: within this loop for (aa1=1; aa1 <= 22 ; aa1++) ^~~ /usr/bin/ld: blastdat.o: in function `main': blastdat.c:(.text.startup+0x1de): warning: the `gets' function is dangerous and should not be used. /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errors.o errors.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o files.o files.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o frequency.o frequency.c motomat.c:644:54: warning: ‘paths’ may be used uninitialized in this function [-Wmaybe-uninitialized] ClThres, DropScore, totb, paths->nblocks, paths->next_path->nbest, ~~~~~^~~~~~~~~~~ convert.c:708:57: warning: iteration 21 invokes undefined behavior [-Waggressive-loop-optimizations] temp[aa] += col->cnt[aa1] * subst->value[aa][aa1]; ~~~~~~~~~~~~~~~~^~~~~ convert.c:703:7: note: within this loop for (aa=0; aa <= 22; aa++) ^~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gcode.o gcode.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lists.o lists.c gcc motomat.o motmisc.o -lm -o motomat /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o memory.o memory.c /usr/bin/ld: motomat.o: in function `main': motomat.c:(.text.startup+0x172): warning: the `gets' function is dangerous and should not be used. make[2]: Leaving directory '/<>/blimps-3.9+ds/protomat' /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o options.o options.c matrix.c: In function ‘read_matrix_header’: matrix.c:102:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c:109:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c:123:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c:143:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c:158:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c: In function ‘read_matrix_body’: matrix.c:291:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p2clib.o p2clib.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pattern.o pattern.c pattern.c: In function ‘scan_patterns’: pattern.c:138:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, pat_file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pattern.c: In function ‘pattern_matches’: pattern.c:232:12: warning: ‘ok’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (x=0; !ok && x>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o protomat.o protomat.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scores.o scores.c protomat.c: In function ‘pr_num_to_aa’: protomat.c:168:5: warning: case label value is less than minimum value for type case -1: printf("."); break; ^~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scoring.o scoring.c protomat.c: In function ‘getscore’: protomat.c:231:7: warning: ‘fin’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (fin != NULL) ^ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sequences.o sequences.c sequences.c: In function ‘read_sequence_header’: sequences.c:314:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lbuff, LARGE_BUFF_LENGTH, sfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:399:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lbuff, LARGE_BUFF_LENGTH, sfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:405:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lbuff, LARGE_BUFF_LENGTH, sfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:412:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lbuff, LARGE_BUFF_LENGTH, sfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:413:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lbuff, LARGE_BUFF_LENGTH, sfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:414:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lbuff, LARGE_BUFF_LENGTH, sfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c: In function ‘type_dbs’: sequences.c:1011:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LARGE_BUFF_LENGTH, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:1012:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, LARGE_BUFF_LENGTH, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c: In function ‘seq_type_dbs’: sequences.c:1114:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:1120:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:1124:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:1125:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c:1126:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sl.o sl.c scoring.c: In function ‘default_scoring_method’: scoring.c:244:5: warning: ‘best_position’ may be used uninitialized in this function [-Wmaybe-uninitialized] enter_score((int)max_seq_score, best_position, frame, matrix, seq); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequences.c: In function ‘read_sequence_header.constprop’: sequences.c:363:26: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(title, "%s ", temp); ^ In file included from /usr/include/stdio.h:873, from ../include/global.h:16, from sequences.c:11: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 501 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strutil.o strutil.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o util.o util.c sl.c: In function ‘InsertSL’: sl.c:311:14: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (q && (*compare)(q->key, key) == 0) /* item is a duplicate */ ~^~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o version.o version.c sl.c: In function ‘SearchSL’: sl.c:421:11: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized] return q->key; ~^~~~~ version.c: In function ‘print_version’: version.c:178:11: warning: ‘ Version ’ directive writing 11 bytes into a region of size between 1 and 100 [-Wformat-overflow=] "%s Version %s %s%s\n", ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/global.h:16, from version.c:11: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 15 and 312 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ version.c:172:11: warning: ‘ Version ’ directive writing 11 bytes into a region of size between 1 and 100 [-Wformat-overflow=] "%s Version %s (%s) %s%s\n", ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/global.h:16, from version.c:11: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 18 and 414 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blweight.o blweight.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blalign.o blalign.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bldist.o bldist.c blweight.c: In function ‘main’: blweight.c:123:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( bdbname, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blweight.c:136:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( conname, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blweight.c:153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blweight.c:191:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blalign.c: In function ‘main’: blalign.c:122:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bldist.c: In function ‘main’: bldist.c:73:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bldist.c:97:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(sijname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bldist.c:130:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bldist.c:143:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blk2pssm.o blk2pssm.c bldist.c:104:26: warning: ‘%s’ directive writing up to 79 bytes into a region of size 74 [-Wformat-overflow=] sprintf(ctemp, "%s/docs/%s", blimps_dir, sijname); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from bldist.c:24: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 86) into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blweight.c: In function ‘adjustweights’: blweight.c:531:16: warning: ‘numinset’ may be used uninitialized in this function [-Wmaybe-uninitialized] numinset = numinset + 1; ~~~~~~~~~~^~~~~~~~~~~~~~~ blk2pssm.c: In function ‘main’: blk2pssm.c:91:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2pssm.c:104:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(conname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2pssm.c:119:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, BLK2PSSM_CTEMPLEN, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rank_matrix.o rank_matrix.c rank_matrix.c: In function ‘main’: rank_matrix.c:42:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(matname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o retblock.o retblock.c rank_matrix.c: In function ‘construct_rank_matrix’: rank_matrix.c:123:2: warning: ‘rank_Qij’ may be used uninitialized in this function [-Wmaybe-uninitialized] free (rank_Qij); ^~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o codehop.o codehop.c retblock.c: In function ‘main’: retblock.c:53:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ retblock.c:69:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(acname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htmlize-codehop.o htmlize-codehop.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oligo_melt.o oligo_melt.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mablock.o mablock.c htmlize-codehop.c: In function ‘main’: htmlize-codehop.c:90:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fin); nline++; ^~~~~~~~~~~~~~~~~~~~~~~~~ oligo_melt.c: In function ‘main’: oligo_melt.c:78:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(fname, 80, stdin); ^~~~~~~~~~~~~~~~~~~~~~~ mablock.c: In function ‘main’: mablock.c:131:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( bdbname, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mablock.c:161:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( OutName, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mablock.c:181:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( outtype, MABLOCK_OUTTYPELEN, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ htmlize-codehop.c:57:40: warning: ‘bcur’ may be used uninitialized in this function [-Wmaybe-uninitialized] struct blist *blist, *bfor, *brev, *bcur; ^~~~ htmlize-codehop.c:104:33: warning: ‘bfor’ may be used uninitialized in this function [-Wmaybe-uninitialized] strcpy(brev->line, bfor->line); ~~~~^~~~~~ mablock.c: In function ‘try_clustal’: mablock.c:413:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLEN, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~ mablock.c:504:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ mablock.c: In function ‘try_msf’: mablock.c:639:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cobbler.o cobbler.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addseqs.o addseqs.c mablock.c: In function ‘try_clustal’: mablock.c:420:26: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 79 [-Wformat-overflow=] sprintf(tmp_name, "%s.%d", OutName, my_pid); ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from mablock.c:43: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 92 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cobbler.c: In function ‘main’: cobbler.c:259:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(cfname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ addseqs.c: In function ‘main’: addseqs.c:153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(infile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ addseqs.c:167:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(seqsfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ addseqs.c:180:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mablock.c: In function ‘insert_blist’: mablock.c:762:26: warning: ‘; distance from previous blo...’ directive writing 32 bytes into a region of size between 21 and 100 [-Wformat-overflow=] sprintf(block->ac, "%s; distance from previous block=(%d,%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mablock.c:762:23: note: directive argument in the range [0, 99999] sprintf(block->ac, "%s; distance from previous block=(%d,%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mablock.c:762:23: note: directive argument in the range [-99999, 2147483647] In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from mablock.c:43: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 37 and 129 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codehop.c: In function ‘find_oligos’: codehop.c:936:18: warning: ‘oligo_clump’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (!Verbose) free(oligo_clump); ^~~~~~~~~~~~~~~~~ addseqs.c: In function ‘best_pos’: addseqs.c:560:33: warning: ‘best_position’ may be used uninitialized in this function [-Wmaybe-uninitialized] blist->endpos = best_position + blist->block->width - 1; ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ mablock.c: In function ‘main’: mablock.c:152:25: warning: ‘; BLOCK’ directive writing 7 bytes into a region of size between 1 and 80 [-Wformat-overflow=] sprintf(Block_ID, "%s; BLOCK", Block_AC); ^~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from mablock.c:43: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 87 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codehop.c: In function ‘compute_max’: codehop.c:1108:31: warning: ‘ic’ may be used uninitialized in this function [-Wmaybe-uninitialized] ctemp[ic++]= nt_btoa[res]; ~~~~~~~~~~~^~~~~~~~~~~~~~~ cobbler.c: In function ‘embed_consensus’: cobbler.c:1070:29: warning: ‘%s’ directive writing up to 79 bytes into a region of size between 69 and 79 [-Wformat-overflow=] sprintf(pssm->de, "%s %s from %d to %d with embedded PSSM", ^~ fam, seqname, firstaa+1, lastaa); ~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from cobbler.c:145: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 33 and 142 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ codehop.c: In function ‘main’: codehop.c:298:44: warning: ‘%s’ directive writing up to 79 bytes into a region of size 74 [-Wformat-overflow=] sprintf(codon_usage_file, "%s/docs/%s", blimps_dir, tmp); ^~ ~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from codehop.c:51: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 86) into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fastaseqs.o fastaseqs.c codehop.c:310:50: warning: ‘%s’ directive writing up to 79 bytes into a region of size 74 [-Wformat-overflow=] sprintf(codon_usage_file, "%s/docs/%s", blimps_dir, tmp); ^~ ~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from codehop.c:51: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 86) into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ addseqs.c: In function ‘fix_ac’: addseqs.c:897:33: warning: ‘; distance from previous blo...’ directive writing 32 bytes into a region of size between 1 and 100 [-Wformat-overflow=] sprintf(blist->block->ac, "%s; distance from previous block=(%d,%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from addseqs.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 37 and 156 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastaseqs.c: In function ‘main’: fastaseqs.c:42:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(infile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastaseqs.c:55:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o LAMA.o LAMA.c LAMA.c: In function ‘getargs’: LAMA.c:403:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname[0], MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA.c:408:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname[1], MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA.c:429:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o find_biassed_blocks.o find_biassed_blocks.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makeblockmap.o makeblockmap.c find_biassed_blocks.c: In function ‘getargs’: find_biassed_blocks.c:293:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ find_biassed_blocks.c: In function ‘read_a_prodom_entry’: find_biassed_blocks.c:637:24: warning: ‘%s’ directive writing up to 4999 bytes into a region of size 100 [-Wformat-overflow=] sprintf(block->ac, "%s%s;", word, entry_name) ; ^~ ~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from find_biassed_blocks.c:46: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 10000 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ find_biassed_blocks.c:638:28: warning: ‘%s’ directive writing up to 4999 bytes into a region of size 100 [-Wformat-overflow=] sprintf(block->number, "%s%s", word, entry_name) ; ^~ ~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from find_biassed_blocks.c:46: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 9999 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ find_biassed_blocks.c:641:24: warning: ‘%s’ directive writing up to 4999 bytes into a region of size 100 [-Wformat-overflow=] sprintf(block->id, "%s; ProDom_mul", entry_name) ; ^~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from find_biassed_blocks.c:46: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 5012 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prints2blocks.o prints2blocks.c prints2blocks.c: In function ‘main’: prints2blocks.c:66:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(inpfname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ find_biassed_blocks.c: In function ‘main’: find_biassed_blocks.c:124:22: warning: ‘.biassed_blocks’ directive writing 15 bytes into a region of size between 1 and 100 [-Wformat-overflow=] sprintf(outname,"%s.biassed_blocks", bdbname) ; ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from find_biassed_blocks.c:46: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 16 and 115 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ prints2blocks.c: In function ‘transform_a_prints_entry’: prints2blocks.c:306:30: warning: ‘%s’ directive writing up to 4999 bytes into a region of size 100 [-Wformat-overflow=] sprintf(block[i1].id, "%s; BLOCK", entry_name) ; ^~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from prints2blocks.c:31: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 5007 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lisblk.o lisblk.c prints2blocks.c:306:30: warning: ‘%s’ directive writing up to 4999 bytes into a region of size 100 [-Wformat-overflow=] sprintf(block[i1].id, "%s; BLOCK", entry_name) ; ^~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from prints2blocks.c:31: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 5007 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c: In function ‘main’: lisblk.c:56:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lisfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c:72:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(blkfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c:88:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(blkfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c:101:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Title, MAXLINE, flis); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c:106:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Pros, MAXLINE, flis); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coduse.o coduse.c In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from lisblk.c:21: In function ‘fgets’, inlined from ‘main’ at lisblk.c:106:4: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ coduse.c: In function ‘main’: coduse.c:68:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(infile, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ coduse.c:81:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(organism, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ coduse.c:98:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o narrow.o narrow.c prints2blocks.c: In function ‘main’: prints2blocks.c:88:28: warning: ‘.info’ directive writing 5 bytes into a region of size between 1 and 80 [-Wformat-overflow=] sprintf(outfname[1], "%s.info", inpfname) ; ^~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from prints2blocks.c:31: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 85 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blk2slx.o blk2slx.c narrow.c: In function ‘main’: narrow.c:96:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, 80, stdin); ^~~~~~~~~~~~~~~~~~~~~~~ narrow.c:107:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(chkname, 80, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~ narrow.c:210:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, chk); ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blkprob.o blkprob.c blk2slx.c: In function ‘main’: blk2slx.c:38:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2slx.c:51:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(conname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o interpro.o interpro.c blkprob.c: In function ‘align_blocks’: blkprob.c:2108:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] sprintf(ctemp, "%d", Results[t].offset+1); ~^ ~~~~~~~~~~~~~~~~~~~ %ld blkprob.c: In function ‘main’: blkprob.c:328:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c:356:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(homfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c:365:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(datfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ interpro.c: In function ‘main’: interpro.c:97:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(iprfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ interpro.c:111:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(iprname, MAXAC, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ narrow.c:306:22: warning: ‘.mast’ directive writing 5 bytes into a region of size between 1 and 80 [-Wformat-overflow=] sprintf(ctemp, "%s.mast", chkname); ^~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from narrow.c:32: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 85 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ narrow.c:320:22: warning: ‘.blimps’ directive writing 7 bytes into a region of size between 1 and 80 [-Wformat-overflow=] sprintf(ctemp, "%s.blimps", chkname); ^~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from narrow.c:32: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 87 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ interpro.c: In function ‘get_iprs’: interpro.c:185:30: warning: ‘.lis’ directive writing 4 bytes into a region of size between 1 and 80 [-Wformat-overflow=] sprintf(fname, "%s.lis", ac); ^~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from interpro.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 84 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c: In function ‘print_blurb’: blkprob.c:568:29: warning: ‘blkprob.stp’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=] { sprintf(fname, "%sblkprob.stp", DatDir); } ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from blkprob.c:70: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 12 and 171 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pssmdist.o pssmdist.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pssmBL.o pssmBL.c blkprob.c: In function ‘read_tiles’: blkprob.c:795:25: warning: ‘blksort.stn’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=] sprintf(fname, "%sblksort.stn", DatDir); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from blkprob.c:70: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 12 and 171 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c: In function ‘main’: pssmdist.c:116:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(mname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:129:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(oname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:141:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(fname, MAXNAME,stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:158:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:169:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c: In function ‘read_repeats’: blkprob.c:831:25: warning: ‘repeats.dat’ directive writing 11 bytes into a region of size between 1 and 160 [-Wformat-overflow=] sprintf(fname, "%srepeats.dat", DatDir); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from blkprob.c:70: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 12 and 171 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c: In function ‘read_bias’: blkprob.c:864:25: warning: ‘blksort.bias’ directive writing 12 bytes into a region of size between 1 and 160 [-Wformat-overflow=] sprintf(fname, "%sblksort.bias", DatDir); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from blkprob.c:70: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 172 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmBL.c: In function ‘main’: pssmBL.c:32:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(pssmname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmBL.c:45:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmBL.c:58:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(conname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o papssm.o papssm.c pssmdist.c: In function ‘compute’: pssmdist.c:245:26: warning: ‘minfirst’ may be used uninitialized in this function [-Wmaybe-uninitialized] int x, xreport, score, minfirst, minlast, pflag, itemp; ^~~~~~~~ pssmdist.c:245:36: warning: ‘minlast’ may be used uninitialized in this function [-Wmaybe-uninitialized] int x, xreport, score, minfirst, minlast, pflag, itemp; ^~~~~~~ papssm.c:105: warning: "FNAMELEN" redefined #define FNAMELEN 80 In file included from ../include/blocksprogs.h:21, from papssm.c:102: ../include/protomat.h:61: note: this is the location of the previous definition #define FNAMELEN 160 /* Max length of file name */ papssm.c: In function ‘main’: papssm.c:253:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(cfname, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c: In function ‘align_blocks’: blkprob.c:2052:26: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(ctemp, "%ld", Results[ block->query_res ].offset + 1); ^~~ blkprob.c:2052:25: note: directive argument in the range [-2147483647, 2147483647] sprintf(ctemp, "%ld", Results[ block->query_res ].offset + 1); ^~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from blkprob.c:70: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c:2108:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(ctemp, "%d", Results[t].offset+1); ^~ blkprob.c:2108:31: note: directive argument in the range [-2147483647, 2147483647] sprintf(ctemp, "%d", Results[t].offset+1); ^~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from blkprob.c:70: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c: In function ‘main’: pssmdist.c:178:22: warning: ‘.dat’ directive writing 4 bytes into a region of size between 1 and 80 [-Wformat-overflow=] sprintf(ctemp, "%s.dat", outname); ^~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from pssmdist.c:72: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 84 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:189:25: warning: ‘.cum’ directive writing 4 bytes into a region of size between 1 and 80 [-Wformat-overflow=] sprintf(ctemp, "%s.cum", outname); ^~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from pssmdist.c:72: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 84 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix_logob.o matrix_logob.c matrix_logob.c: In function ‘main’: matrix_logob.c:171:18: warning: passing argument 1 of ‘sprintf’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] sprintf(line, "cp %s/colors %s", logodir, colors) ; ^~~~ In file included from /usr/include/features.h:424, from /usr/include/arm-linux-gnueabihf/sys/types.h:25, from matrix_logob.c:97: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:1: note: expected ‘char * restrict’ but argument is of type ‘const char *’ __NTH (sprintf (char *__restrict __s, const char *__restrict __fmt, ...)) ^~~~~ matrix_logob.c:209:22: warning: passing argument 1 of ‘sprintf’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] sprintf(line, "cp \'colors.%s\' \'colors.%s\'", suffix, suffix2); ^~~~ In file included from /usr/include/features.h:424, from /usr/include/arm-linux-gnueabihf/sys/types.h:25, from matrix_logob.c:97: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:1: note: expected ‘char * restrict’ but argument is of type ‘const char *’ __NTH (sprintf (char *__restrict __s, const char *__restrict __fmt, ...)) ^~~~~ matrix_logob.c:271:18: warning: passing argument 1 of ‘sprintf’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] sprintf(line, "%s/makelogob \'%s\' > /dev/null", logodir, suffix2) ; ^~~~ In file included from /usr/include/features.h:424, from /usr/include/arm-linux-gnueabihf/sys/types.h:25, from matrix_logob.c:97: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:34:1: note: expected ‘char * restrict’ but argument is of type ‘const char *’ __NTH (sprintf (char *__restrict __s, const char *__restrict __fmt, ...)) ^~~~~ matrix_logob.c: In function ‘write_symvec’: matrix_logob.c:458:24: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int’ [-Wformat=] fprintf(out, "%*ld %*.0lf %*.*f % .1E\n", ~~~^ %*d nfield, pos+1, infofield, ntrue, infofield, infodecim, ~~~~~ matrix_logob.c: In function ‘main’: matrix_logob.c:172:10: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line) ; ^~~~~~~~~~~~ matrix_logob.c:178:35: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] if (stat("wave", &status) < 0) system("touch wave") ; ^~~~~~~~~~~~~~~~~~~~ matrix_logob.c:179:36: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] if (stat("marks", &status) < 0) system("touch marks") ; ^~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:210:14: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ matrix_logob.c:272:10: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line) ; ^~~~~~~~~~~~ matrix_logob.c: In function ‘getargs’: matrix_logob.c:335:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:351:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(blockAC, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:360:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(suffix, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c: In function ‘view_logo’: matrix_logob.c:592:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ans, 2, stdin) ; ^~~~~~~~~~~~~~~~~~~~ matrix_logob.c:598:13: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line) ; ^~~~~~~~~~~~ matrix_logob.c:602:13: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line) ; ^~~~~~~~~~~~ matrix_logob.c: In function ‘main’: matrix_logob.c:171:38: warning: ‘%s’ directive writing up to 89 bytes into a region of size between 70 and 149 [-Wformat-overflow=] sprintf(line, "cp %s/colors %s", logodir, colors) ; ^~ ~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from matrix_logob.c:99: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 12 and 180 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:209:55: warning: ‘%s’ directive writing up to 79 bytes into a region of size between 60 and 139 [-Wformat-overflow=] sprintf(line, "cp \'colors.%s\' \'colors.%s\'", suffix, suffix2); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from matrix_logob.c:99: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 23 and 181 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:271:40: warning: ‘%s’ directive writing up to 79 bytes into a region of size between 69 and 148 [-Wformat-overflow=] sprintf(line, "%s/makelogob \'%s\' > /dev/null", logodir, suffix2) ; ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from matrix_logob.c:99: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 26 and 184 bytes into a destination of size 160 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:273:33: warning: ‘%s’ directive writing up to 79 bytes into a region of size 75 [-Wformat-overflow=] sprintf(outname, "logo.%s", suffix2); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from matrix_logob.c:99: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 85 bytes into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c: In function ‘view_logo’: matrix_logob.c:597:31: warning: ‘%s’ directive writing up to 79 bytes into a region of size between 0 and 79 [-Wformat-overflow=] sprintf(line, "%s %s %s", PSviewer, PSviewer_opt, outname) ; ^~ ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from matrix_logob.c:99: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 3 or more bytes (assuming 161) into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:601:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(line, "%s %s", PSprint, outname) ; ^ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from matrix_logob.c:99: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 81) into a destination of size 80 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makelogob.o makelogob.c makelogob.c:2772:1: warning: return type defaults to ‘int’ [-Wimplicit-int] main(argc, argv) ^~~~ makelogob.c: In function ‘themain’: makelogob.c:2482:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(symvec->f, "%ld%*[^\n]", &symbols); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:2535:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(symvec->f, "%ld%ld%lg%lg%*[^\n]", &V.position_, &nl, &rsl, &rsvar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:2544:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(symvec->f, "%c%ld%*[^\n]", &map[b].b, &map[b].n); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘readparameters’: makelogob.c:1780:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%ld%*[^\n]", lowest, highest); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1788:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%*[^\n]", bar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1796:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%lg%*[^\n]", xcorner, ycorner); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1804:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", rotation); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1821:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", charwidth); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1833:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%lg%*[^\n]", barheight, barwidth); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1849:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", barbits); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1873:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", Ibeamfraction); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1885:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1897:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1909:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1921:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1929:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%*[^\n]", stacksperline); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1941:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%*[^\n]", linesperpage); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1953:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", linemove); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1969:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1977:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", shrink); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1999:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%*[^\n]", &numberstrings); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:2017:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%lg%lg%*[^\n]", &stringspot->x, &stringspot->y, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &stringspot->s); ~~~~~~~~~~~~~~~ makelogob.c: In function ‘getstring’: makelogob.c:653:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘readwaveparameters’: makelogob.c:803:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%c%*[^\n]", &p->extreme); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:807:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->wavelocation); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:809:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->wavebit); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:811:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->waveamplitude); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:813:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->wavelength); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:824:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->dash); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:829:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->thickness); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘warnifsitesused’: makelogob.c:2058:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(symvec->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘copyaline’: makelogob.c:769:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘p2’: makelogob.c:1174:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(LINK->colors->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1181:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(LINK->colors->f, "%c%lg%lg%lg%*[^\n]", &LINK->symbol, &LINK->red, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &LINK->green, &LINK->blue); ~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘getmark’: makelogob.c:2225:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(marks->f, "%c%lg%lg%lg%*[^\n]", marksymbol, markbase, markbits, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ markscale); ~~~~~~~~~~ papssm.c:351:9: warning: ‘obs_freqs’ may be used uninitialized in this function [-Wmaybe-uninitialized] output_matrix(obs_freqs, Fou); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ papssm.c:344:23: warning: ‘matrix’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (!FloatPt) output_matrix(matrix, Fex); ^~~~~~~~~~~~~~~~~~~~~~~~~~ papssm.c:328:21: warning: ‘diric’ may be used uninitialized in this function [-Wmaybe-uninitialized] matrix = make_diri(block, freqs, diric, obs_freqs); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ papssm.c:334:21: warning: ‘qij’ may be used uninitialized in this function [-Wmaybe-uninitialized] matrix = make_gribq(block, qij, obs_freqs); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blocks_search.o blocks_search.c blocks_search.c: In function ‘read_startup_info’: blocks_search.c:179:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, curr_year_month); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c:182:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, logdate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c: In function ‘write_csh’: blocks_search.c:426:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ blocks_search.c: In function ‘main’: blocks_search.c:610:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("umask 006"); ^~~~~~~~~~~~~~~~~~~ blocks_search.c:635:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ blocks_search.c:645:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ blocks_search.c: In function ‘read_startup_info’: blocks_search.c:181:24: warning: ‘%s’ directive writing up to 499 bytes into a region of size 493 [-Wformat-overflow=] sprintf(log_dir, "%s/%s", LOG_SUBDIR, buf); ^~ ~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 507 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c:184:25: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(log_file, "%s/%s", log_dir, buf); ^~ ~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 1000 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o LAMA_search.o LAMA_search.c blocks_search.c: In function ‘parse_and_cs_setup’: blocks_search.c:368:30: warning: ‘%s’ directive writing up to 499 bytes into a region of size 487 [-Wformat-overflow=] sprintf(buf, "chmod -f 660 %s", cs_file); /* no general read */ ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 513 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c: In function ‘read_startup_info’: LAMA_search.c:156:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, curr_year_month); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c:159:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, logdate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c: In function ‘clean_temp_files’: LAMA_search.c:272:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ LAMA_search.c: In function ‘queue_to_mail’: LAMA_search.c:576:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ LAMA_search.c:583:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ LAMA_search.c:590:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ LAMA_search.c: In function ‘main’: LAMA_search.c:692:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("umask 006"); ^~~~~~~~~~~~~~~~~~~ blocks_search.c: In function ‘write_csh’: blocks_search.c:425:28: warning: ‘%s’ directive writing up to 499 bytes into a region of size 490 [-Wformat-overflow=] sprintf(buf, "chmod a+x %s", csh_file); ^~ ~~~~~~~~ LAMA_search.c: In function ‘read_startup_info’: In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 510 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c:158:24: warning: ‘%s’ directive writing up to 499 bytes into a region of size 493 [-Wformat-overflow=] sprintf(log_dir, "%s/%s", LOG_SUBDIR, buf); ^~ ~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from LAMA_search.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 507 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c:161:25: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(log_file, "%s/%s", log_dir, buf); ^~ ~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from LAMA_search.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 1000 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c: In function ‘write_sequence’: blocks_search.c:475:30: warning: ‘%s’ directive writing up to 499 bytes into a region of size 487 [-Wformat-overflow=] sprintf(buf, "chmod -f 660 %s", seq_file); ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 513 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c: In function ‘run_search’: blocks_search.c:504:20: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(buf, "%s %s > /dev/null 2>&1", blimps, cs_file); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1017 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c:526:22: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(buf, "%s %s > %s 2>&1", blksort, cs_file, blksort_output); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 10 and 1507 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c:515:22: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(buf, "%s %s -mast -E %s %s > %s 2>&1", ^~ blkprob, cs_file, Expect, Output, blksort_output); ~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 1536 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c: In function ‘display_output’: blocks_search.c:557:41: warning: ‘%s’ directive writing up to 499 bytes into a region of size 479 [-Wformat-overflow=] sprintf(buf, "%s/htmlize-blksort.pl %s", BIN_SUBDIR, blksort_output); ^~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 22 and 521 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c:554:41: warning: ‘%s’ directive writing up to 499 bytes into a region of size 479 [-Wformat-overflow=] sprintf(buf, "%s/htmlize-blkprob.pl %s", BIN_SUBDIR, blksort_output); ^~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 22 and 521 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c:551:40: warning: ‘%s’ directive writing up to 499 bytes into a region of size 480 [-Wformat-overflow=] sprintf(buf, "%s/htmlize-blimps.pl %s", BIN_SUBDIR, blimps_output); ^~ ~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 520 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c: In function ‘main’: blocks_search.c:633:55: warning: ‘%s’ directive writing up to 499 bytes into a region of size 466 [-Wformat-overflow=] sprintf(buf, "%s/add_queue_entry.pl BLOCKS_queue %s", ^~ BIN_SUBDIR, csh_file); ~~~~~~~~ In file included from /usr/include/stdio.h:873, from blocks_search.c:62: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 35 and 534 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c: In function ‘run_search’: LAMA_search.c:450:34: warning: ‘%s’ directive writing up to 499 bytes into a region of size 483 [-Wformat-overflow=] sprintf(buf, "/usr/bin/nice -5 %s %s,%s %s 0 %d 0 %f > /dev/null 2>&1", ^~ LAMA, Qblock_file, database, LAMA_output, Debug_Level, ~~~~ LAMA_search.c:450:16: note: assuming directive output of 8 bytes sprintf(buf, "/usr/bin/nice -5 %s %s,%s %s 0 %d 0 %f > /dev/null 2>&1", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from LAMA_search.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 48 and 2368 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c: In function ‘convert_LAMA_output’: LAMA_search.c:528:38: warning: ‘%s’ directive writing up to 499 bytes into a region of size 480 [-Wformat-overflow=] sprintf(buf, "%s/htmlize-blimps.pl %s | %s/htmlize-LAMA %s %s - -", ^~ BIN_SUBDIR, LAMA_output, ~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from LAMA_search.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 44 and 1541 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c: In function ‘queue_to_mail’: LAMA_search.c:575:20: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(buf, "%s %s \"/usr/bin/nice -10 %s %s,%s %s 0 %d 0 %f > /dev/null 2>&1\"", add_queue_entry, LAMA_queue, LAMA, Qblock_file, database, LAMA_output, Debug_Level, Score_Cutoff_Level); ^~ ~~~~~~~~~~ LAMA_search.c:575:16: note: assuming directive output of 8 bytes sprintf(buf, "%s %s \"/usr/bin/nice -10 %s %s,%s %s 0 %d 0 %f > /dev/null 2>&1\"", add_queue_entry, LAMA_queue, LAMA, Qblock_file, database, LAMA_output, Debug_Level, Score_Cutoff_Level); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from LAMA_search.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 53 and 3371 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c:582:20: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(buf, "%s %s '(cat %s) | /usr/bin/mailx -s \"LAMA Results\" -r \"blocks@fhcrc.org\" %s'", add_queue_entry, LAMA_queue, LAMA_output, Address_Ptr->val); ^~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from LAMA_search.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 69 or more bytes (assuming 1566) into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c:588:20: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(buf, "%s %s 'rm -f %s/%d.*'", add_queue_entry, LAMA_queue, ^~ ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from LAMA_search.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 1029 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o block_vis.o block_vis.c LAMA_search.c: In function ‘runCyrca’: LAMA_search.c:648:21: warning: ‘%s’ directive writing up to 499 bytes into a region of size 485 [-Wformat-overflow=] sprintf (buf, "%s %s %s %s", ^~ CYRCA, LAMA_output, CYRCA_ZSCORE, cyrcaOutputFile); ~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from LAMA_search.c:55: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 1019 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o format_block.o format_block.c format_block.c: In function ‘read_startup_info’: format_block.c:117:8: warning: null argument where non-null required (argument 1) [-Wnonnull] printf(0); ^~~~~~ format_block.c:132:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, curr_year_month); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:135:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, logdate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c: In function ‘clean_temp_files’: format_block.c:241:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ format_block.c: In function ‘main’: format_block.c:907:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("umask 006"); ^~~~~~~~~~~~~~~~~~~ format_block.c: In function ‘read_startup_info’: format_block.c:126:31: warning: ‘%s’ directive writing 4 bytes into a region of size between 1 and 500 [-Wformat-overflow=] sprintf(extblock_stdout, "%s%s/extblock_stdout", home_dir, BIN_SUBDIR); ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 520 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:127:24: warning: ‘%s’ directive writing 4 bytes into a region of size between 1 and 500 [-Wformat-overflow=] sprintf(Blweight, "%s%s/blweight", home_dir, BIN_SUBDIR); ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 513 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:128:28: warning: ‘%s’ directive writing 4 bytes into a region of size between 1 and 500 [-Wformat-overflow=] sprintf(Block_fileNW, "%s%s/%d.blk.NW.temp", home_dir, TMP_SUBDIR, pid); ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 528 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:129:26: warning: ‘%s’ directive writing 4 bytes into a region of size between 1 and 500 [-Wformat-overflow=] sprintf(Block_file, "%s%s/%d.blk", home_dir, TMP_SUBDIR, pid); ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 520 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:134:23: warning: ‘%s’ directive writing 4 bytes into a region of size between 1 and 500 [-Wformat-overflow=] sprintf(log_dir, "%s%s/%s", home_dir, LOG_SUBDIR, buf); ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 1004 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:137:23: warning: ‘%s’ directive writing 4 bytes into a region of size between 1 and 500 [-Wformat-overflow=] sprintf(tmp_dir, "%s%s", home_dir, TMP_SUBDIR); ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 504 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c: In function ‘clean_temp_files’: format_block.c:240:23: warning: ‘%s’ directive writing up to 499 bytes into a region of size 494 [-Wformat-overflow=] sprintf(buf, "rm -f %s%s/%d*temp", home_dir, TMP_SUBDIR, pid); ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 18 and 527 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c: In function ‘make_block’: format_block.c:757:27: warning: ‘; distance from previous blo...’ directive writing 34 bytes into a region of size between 1 and 100 [-Wformat-overflow=] sprintf(block->ac, "%s; distance from previous block = (%d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 36 and 145 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:769:28: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 99 [-Wformat-overflow=] sprintf(block->ac, "%s,%d)", ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 113 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:782:27: warning: ‘; width=’ directive writing 8 bytes into a region of size between 1 and 100 [-Wformat-overflow=] sprintf(block->bl, "%s; width=%d; seqs=%d;", ^~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 138 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:485:57: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] block->sequences[block->num_sequences].name[k] = '\0' ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o biassed_blocks_finder.o biassed_blocks_finder.c biassed_blocks_finder.c: In function ‘parse’: biassed_blocks_finder.c:101:6: warning: implicit declaration of function ‘plustospace’; did you mean ‘isspace’? [-Wimplicit-function-declaration] plustospace(entries[i].val); ^~~~~~~~~~~ isspace biassed_blocks_finder.c:102:6: warning: implicit declaration of function ‘unescape_url’ [-Wimplicit-function-declaration] unescape_url(entries[i].val); ^~~~~~~~~~~~ biassed_blocks_finder.c: In function ‘clean_temp_files’: biassed_blocks_finder.c:120:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ biassed_blocks_finder.c: In function ‘main’: biassed_blocks_finder.c:295:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("umask 006"); ^~~~~~~~~~~~~~~~~~~ biassed_blocks_finder.c: In function ‘run_program’: biassed_blocks_finder.c:221:20: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(buf, "%s %s %f %f %d > %s 2>&1", ^~ find_biassed_blocks, Block_file, ~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from biassed_blocks_finder.c:13: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 30 and 1527 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htmlize-LAMA.o htmlize-LAMA.c format_block.c: In function ‘weight_block’: format_block.c:802:20: warning: ‘%s’ directive writing up to 499 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(buf, "%s %s %s %s %s > /dev/null", ^~ Blweight, Block_fileNW, Block_file, Weight_type, Weight_scale); ~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 2512 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o show_aligned_blocks.o show_aligned_blocks.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makelis.o makelis.c /usr/bin/gcc -g -O2 -fdebug-prefix-map=/<>/blimps-3.9+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blk2mot.o blk2mot.c makelis.c: In function ‘make_lis’: makelis.c:236:26: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 499 [-Wformat-overflow=] sprintf(seqname, "%s_%d", Process, Count); ^~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from makelis.c:43: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 512 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelis.c: In function ‘read_seqs’: makelis.c:390:21: warning: ‘... family’ directive writing 10 bytes into a region of size between 1 and 500 [-Wformat-overflow=] sprintf(DELine, "%s... family", Buffer); ^~~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from makelis.c:43: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 510 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2mot.c: In function ‘main’: blk2mot.c:74:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(seqfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2mot.c:95:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(blkfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2mot.c:129:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(motfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2mot.c: In function ‘getseqs’: blk2mot.c:148:22: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] int ns, itemp, i, j; ^ ar cr libblimps.a blimps.o blimps-mem.o blocks.o config.o convert.o errors.o files.o frequency.o gcode.o lists.o matrix.o memory.o options.o p2clib.o pattern.o protomat.o scores.o scoring.o sequences.o sl.o strutil.o util.o version.o /usr/bin/gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libblimps.so.3 -o libblimps.so.3.0.0 -lm blimps.o blimps-mem.o blocks.o config.o convert.o errors.o files.o frequency.o gcode.o lists.o matrix.o memory.o options.o p2clib.o pattern.o protomat.o scores.o scoring.o sequences.o sl.o strutil.o util.o version.o makelis.c: In function ‘main’: makelis.c:171:28: warning: ‘...’ directive writing 3 bytes into a region of size between 1 and 481 [-Wformat-overflow=] sprintf(SubjectLine, "%19s...", SubjectLine); ^~~ In file included from /usr/include/stdio.h:873, from ../include/blocksprogs.h:3, from makelis.c:43: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 23 and 503 bytes into a destination of size 500 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /sbin/ldconfig -n . rm -f ./libblimps.so && ln -sf libblimps.so.3.0.0 ./libblimps.so rm -f blimps /usr/bin/gcc -o blimps blimps.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f blweight /usr/bin/gcc -o blweight blweight.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f blalign /usr/bin/gcc -o blalign blalign.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f bldist /usr/bin/gcc -o bldist bldist.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f blk2pssm /usr/bin/gcc -o blk2pssm blk2pssm.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f rank_matrix /usr/bin/gcc -o rank_matrix rank_matrix.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f retblock /usr/bin/gcc -o retblock retblock.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f codehop /usr/bin/gcc -o codehop codehop.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f htmlize-codehop /usr/bin/gcc -o htmlize-codehop htmlize-codehop.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f oligo_melt /usr/bin/gcc -o oligo_melt oligo_melt.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f mablock /usr/bin/gcc -o mablock mablock.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f cobbler /usr/bin/gcc -o cobbler cobbler.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f addseqs /usr/bin/gcc -o addseqs addseqs.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f fastaseqs /usr/bin/gcc -o fastaseqs fastaseqs.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f find_biassed_blocks /usr/bin/gcc -o find_biassed_blocks find_biassed_blocks.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f makeblockmap /usr/bin/gcc -o makeblockmap makeblockmap.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f prints2blocks /usr/bin/gcc -o prints2blocks prints2blocks.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f lisblk /usr/bin/gcc -o lisblk lisblk.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f coduse /usr/bin/gcc -o coduse coduse.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f narrow /usr/bin/gcc -o narrow narrow.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f blk2slx /usr/bin/gcc -o blk2slx blk2slx.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f blkprob /usr/bin/gcc -o blkprob blkprob.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f interpro /usr/bin/gcc -o interpro interpro.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f pssmdist /usr/bin/gcc -o pssmdist pssmdist.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f pssmBL /usr/bin/gcc -o pssmBL pssmBL.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f papssm /usr/bin/gcc -o papssm papssm.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f matrix_logob /usr/bin/gcc -o matrix_logob matrix_logob.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f makelogob /usr/bin/gcc -o makelogob makelogob.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f blocks_search /usr/bin/gcc -o blocks_search blocks_search.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f LAMA_search /usr/bin/gcc -o LAMA_search LAMA_search.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f block_vis /usr/bin/gcc -o block_vis block_vis.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f format_block /usr/bin/gcc -o format_block format_block.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f biassed_blocks_finder /usr/bin/gcc -o biassed_blocks_finder biassed_blocks_finder.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f htmlize-LAMA /usr/bin/gcc -o htmlize-LAMA htmlize-LAMA.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f show_aligned_blocks /usr/bin/gcc -o show_aligned_blocks show_aligned_blocks.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f makelis /usr/bin/gcc -o makelis makelis.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f blk2mot /usr/bin/gcc -o blk2mot blk2mot.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm rm -f LAMA /usr/bin/gcc -o LAMA LAMA.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L./ -lblimps -lm make[2]: Leaving directory '/<>/blimps-3.9+ds/blimps' make[1]: Leaving directory '/<>/blimps-3.9+ds' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>/blimps-3.9+ds' dh_auto_install -- prefix=/usr make -j4 install DESTDIR=/<>/blimps-3.9\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr make[2]: Entering directory '/<>/blimps-3.9+ds' mkdir -p /<>/blimps-3.9+ds/debian/tmp/usr/bin && \ cp -a blimps/fastaseqs \ /<>/blimps-3.9+ds/debian/tmp/usr/bin/ mkdir -p /<>/blimps-3.9+ds/debian/tmp/usr/include/blimps && \ cp include/*.h /<>/blimps-3.9+ds/debian/tmp/usr/include/blimps/ mkdir -p /<>/blimps-3.9+ds/debian/tmp/usr/lib && \ cp -a blimps/*.so.* \ /<>/blimps-3.9+ds/debian/tmp/usr/lib/ mkdir -p /<>/blimps-3.9+ds/debian/tmp/usr/share/blimps && \ cp -a docs \ /<>/blimps-3.9+ds/debian/tmp/usr/share/blimps/ mkdir -p /<>/blimps-3.9+ds/debian/tmp/usr/share/doc/blimps && \ cp -a LICENSE README UPDATES \ /<>/blimps-3.9+ds/debian/tmp/usr/share/doc/blimps/ mkdir -p /<>/blimps-3.9+ds/debian/tmp/usr/lib && \ cp -a blimps/*.a blimps/*.so \ /<>/blimps-3.9+ds/debian/tmp/usr/lib/ make[2]: Leaving directory '/<>/blimps-3.9+ds' find debian/tmp -name LICENSE -delete make[1]: Leaving directory '/<>/blimps-3.9+ds' debian/rules override_dh_install make[1]: Entering directory '/<>/blimps-3.9+ds' dh_install d-shlibmove --commit \ --multiarch \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*.so Library package automatic movement utility set -e install -d -m 755 debian/libblimps3-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libblimps3/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/libblimps.a debian/libblimps3-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/libblimps.la debian/libblimps3-dev/usr/lib/arm-linux-gnueabihf || true mv debian/tmp/usr/lib/libblimps.so debian/libblimps3-dev/usr/lib/arm-linux-gnueabihf mv /<>/blimps-3.9+ds/debian/tmp/usr/lib/libblimps.so.3 debian/libblimps3/usr/lib/arm-linux-gnueabihf mv /<>/blimps-3.9+ds/debian/tmp/usr/lib/libblimps.so.3.0.0 debian/libblimps3/usr/lib/arm-linux-gnueabihf PKGDEV=libblimps3-dev PKGSHL=libblimps3 install -d -m 755 debian/libblimps3-dev/usr/include mv debian/tmp/usr/include/blimps debian/libblimps3-dev/usr/include mv: cannot stat 'debian/tmp/usr/lib/libblimps.la': No such file or directory make[1]: Leaving directory '/<>/blimps-3.9+ds' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol log10 used by debian/libblimps3/usr/lib/arm-linux-gnueabihf/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol lgamma used by debian/libblimps3/usr/lib/arm-linux-gnueabihf/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libblimps3/usr/lib/arm-linux-gnueabihf/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol ceil used by debian/libblimps3/usr/lib/arm-linux-gnueabihf/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libblimps3/usr/lib/arm-linux-gnueabihf/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/blimps-utils/usr/bin/fastaseqs was not linked against libm.so.6 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package blimps-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libblimps3 (in debian/libblimps3); do_strip: , oemstrip: pkgstriptranslations: processing blimps-utils (in debian/blimps-utils); do_strip: , oemstrip: pkgstriptranslations: processing blimps-examples (in debian/blimps-examples); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libblimps3/DEBIAN/control, package libblimps3, directory debian/libblimps3 INFO: pkgstripfiles: waiting for lock (libblimps3) ... pkgstripfiles: processing control file: debian/blimps-examples/DEBIAN/control, package blimps-examples, directory debian/blimps-examples INFO: pkgstripfiles: waiting for lock (blimps-examples) ... INFO: pkgstripfiles: waiting for lock (libblimps3) ... INFO: pkgstripfiles: waiting for lock (blimps-examples) ... INFO: pkgstripfiles: waiting for lock (libblimps3) ... INFO: pkgstripfiles: waiting for lock (blimps-examples) ... INFO: pkgstripfiles: waiting for lock (libblimps3) ... INFO: pkgstripfiles: waiting for lock (blimps-examples) ... INFO: pkgstripfiles: waiting for lock (libblimps3) ... INFO: pkgstripfiles: waiting for lock (blimps-examples) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/blimps-utils/DEBIAN/control, package blimps-utils, directory debian/blimps-utils Searching for duplicated docs in dependency libblimps3... INFO: pkgstripfiles: waiting for lock (libblimps3) ... symlinking changelog.Debian.gz in blimps-utils to file in libblimps3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package blimps-utils ... pkgstripfiles: No PNG files. INFO: pkgstripfiles: waiting for lock (blimps-examples) ... dpkg-deb: building package 'blimps-utils' in '../blimps-utils_3.9+ds-1_armhf.deb'. INFO: pkgstripfiles: waiting for lock (libblimps3) ... INFO: pkgstriptranslations version 143 pkgstripfiles: Running PNG optimization (using 4 cpus) for package blimps-examples ... pkgstripfiles: No PNG files. dpkg-deb: building package 'blimps-examples' in '../blimps-examples_3.9+ds-1_armhf.deb'. pkgstriptranslations: processing blimps-utils-dbgsym (in debian/.debhelper/blimps-utils/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (libblimps3) ... pkgstripfiles: processing control file: debian/.debhelper/blimps-utils/dbgsym-root/DEBIAN/control, package blimps-utils-dbgsym, directory debian/.debhelper/blimps-utils/dbgsym-root dpkg-deb: building package 'blimps-utils-dbgsym' in 'debian/.debhelper/scratch-space/build-blimps-utils/blimps-utils-dbgsym_3.9+ds-1_armhf.deb'. Renaming blimps-utils-dbgsym_3.9+ds-1_armhf.deb to blimps-utils-dbgsym_3.9+ds-1_armhf.ddeb INFO: pkgstripfiles: waiting for lock (libblimps3) ... INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libblimps3-dev (in debian/libblimps3-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libblimps3-dev/DEBIAN/control, package libblimps3-dev, directory debian/libblimps3-dev Searching for duplicated docs in dependency libblimps3... symlinking changelog.Debian.gz in libblimps3-dev to file in libblimps3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libblimps3-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libblimps3-dev' in '../libblimps3-dev_3.9+ds-1_armhf.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libblimps3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libblimps3' in '../libblimps3_3.9+ds-1_armhf.deb'. INFO: pkgstriptranslations version 143 pkgstriptranslations: processing libblimps3-dbgsym (in debian/.debhelper/libblimps3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libblimps3/dbgsym-root/DEBIAN/control, package libblimps3-dbgsym, directory debian/.debhelper/libblimps3/dbgsym-root dpkg-deb: building package 'libblimps3-dbgsym' in 'debian/.debhelper/scratch-space/build-libblimps3/libblimps3-dbgsym_3.9+ds-1_armhf.deb'. Renaming libblimps3-dbgsym_3.9+ds-1_armhf.deb to libblimps3-dbgsym_3.9+ds-1_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../blimps_3.9+ds-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190111-2058 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ blimps_3.9+ds-1_armhf.changes: ------------------------------ Format: 1.8 Date: Fri, 11 Jan 2019 14:16:37 +0100 Source: blimps Binary: blimps-utils blimps-examples libblimps3-dev libblimps3 Architecture: armhf Version: 3.9+ds-1 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: blimps-examples - blocks database improved searcher (example data) blimps-utils - blocks database improved searcher libblimps3 - blocks database improved searcher library libblimps3-dev - blocks database improved searcher library (development) Changes: blimps (3.9+ds-1) unstable; urgency=medium . * Homepage vanished - point to waybackmachine as homepage * Rebuild tarball by droping all binaries * Fetch suggested patches for more modern compilers * debhelper 12 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 * hardening=+all * Refactor single patch * Use d-shlibs * Avoid privacy breach by linking to external gif Checksums-Sha1: f8b8a24738067a3a4902719ad2e19eb16f5f0681 218064 blimps-examples_3.9+ds-1_armhf.deb 3f0833b4447b44124fccdea06c5a9e648e9467d5 7804 blimps-utils-dbgsym_3.9+ds-1_armhf.ddeb d1ff6fe422e7db35095060f5538b13d7d629dde4 234288 blimps-utils_3.9+ds-1_armhf.deb e9207cec993428757f4542f57f022bf84b7f56ea 6297 blimps_3.9+ds-1_armhf.buildinfo 845f54a47e9136c73b10d804192a0aa5160d7662 143416 libblimps3-dbgsym_3.9+ds-1_armhf.ddeb b4c65daa5263d5f87ce87f147e22318f4bcc6bf2 85812 libblimps3-dev_3.9+ds-1_armhf.deb e0efd721777bf0c4e48a692d0cf613a21740f91b 55828 libblimps3_3.9+ds-1_armhf.deb Checksums-Sha256: b5bf74ae22eeb90dcfc887c61f4d4d513f0f43b09453261ef4576e2e37a05992 218064 blimps-examples_3.9+ds-1_armhf.deb 97c0070c8fc78dfd49da14310632a4bc67103a3e5877f6c9f8ee4a37b09f75ca 7804 blimps-utils-dbgsym_3.9+ds-1_armhf.ddeb f639cb54c03e8c23b8795b73397aeee39e7c060212ec72fbb1a3caf3b83e4c72 234288 blimps-utils_3.9+ds-1_armhf.deb 7885b6f848d79ae9e06aa8b3104c2cf5f9980ad19bf6fdc51d70a385a2112903 6297 blimps_3.9+ds-1_armhf.buildinfo cfca959fd7c52afde3324a9a9a9c16916b2eedc5a43a8973802e240c7c3df701 143416 libblimps3-dbgsym_3.9+ds-1_armhf.ddeb b1e62b1c71862d2ea407253ef6771913df2330e110133c3b2c05c9b63695ffa7 85812 libblimps3-dev_3.9+ds-1_armhf.deb 201872dd8d4558d68387b81011f67fcb81dbe7abe63af46edfd0362114b78f0b 55828 libblimps3_3.9+ds-1_armhf.deb Files: 9fba3ec4f8ea4dbc36658fef9ba6e6da 218064 non-free/science optional blimps-examples_3.9+ds-1_armhf.deb 57e142f505d5616a73989f423af017aa 7804 non-free/debug optional blimps-utils-dbgsym_3.9+ds-1_armhf.ddeb a3e6b0ff1cac3c89af6f0008d177cc32 234288 non-free/science optional blimps-utils_3.9+ds-1_armhf.deb 1690e026f806485d80baca7200a6a93f 6297 non-free/science optional blimps_3.9+ds-1_armhf.buildinfo f229a2412bef2c613970b0625635869f 143416 non-free/debug optional libblimps3-dbgsym_3.9+ds-1_armhf.ddeb 6fdff989ade2843ff1fe405466b2c0ba 85812 non-free/libdevel optional libblimps3-dev_3.9+ds-1_armhf.deb 5135418a64f326c1ecf01c5cca10b44b 55828 non-free/libs optional libblimps3_3.9+ds-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ blimps-examples_3.9+ds-1_armhf.deb ---------------------------------- new debian package, version 2.0. size 218064 bytes: control archive=3320 bytes. 704 bytes, 17 lines control 10568 bytes, 106 lines md5sums Package: blimps-examples Source: blimps Version: 3.9+ds-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1363 Recommends: tcsh | csh Enhances: blimps-utils, libblimps3-dev Section: non-free/science Priority: optional Homepage: https://web.archive.org/web/20170606235903/http://blocks.fhcrc.org/blocks/uploads/blimps/ Description: blocks database improved searcher (example data) BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package contains example data. drwxr-xr-x root/root 0 2019-01-11 13:16 ./ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/blimps-examples/ -rw-r--r-- root/root 608 2019-01-11 13:16 ./usr/share/doc/blimps-examples/changelog.Debian.gz -rw-r--r-- root/root 6796 2019-01-11 13:16 ./usr/share/doc/blimps-examples/copyright drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/blimps-examples/examples/ -rw-r--r-- root/root 66 2005-02-23 20:07 ./usr/share/doc/blimps-examples/examples/README drwxr-xr-x root/root 0 2006-05-10 18:50 ./usr/share/doc/blimps-examples/examples/blimps/ -rw-r--r-- root/root 1922 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/README -rwxr-xr-x root/root 2782 2003-12-04 23:02 ./usr/share/doc/blimps-examples/examples/blimps/batch-search.pl -rwxr-xr-x root/root 4662 2001-08-10 18:55 ./usr/share/doc/blimps-examples/examples/blimps/blimps.blkprob.csh -rwxr-xr-x root/root 4607 2001-08-10 18:57 ./usr/share/doc/blimps-examples/examples/blimps/blimps.blksort.csh -rw-r--r-- root/root 3473 2000-06-04 04:08 ./usr/share/doc/blimps-examples/examples/blimps/blkprob.stp -rw-r--r-- root/root 270777 2000-06-04 03:54 ./usr/share/doc/blimps-examples/examples/blimps/blksort.bias -rw-r--r-- root/root 3762 1995-05-25 16:48 ./usr/share/doc/blimps-examples/examples/blimps/blksort.stn -rw-r--r-- root/root 6456 2000-06-04 04:08 ./usr/share/doc/blimps-examples/examples/blimps/blksort.stp drwxr-xr-x root/root 0 2006-05-10 18:50 ./usr/share/doc/blimps-examples/examples/blimps/distribution/ -rw-r--r-- root/root 48808 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.bli -rw-r--r-- root/root 5021 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.blkprob -rw-r--r-- root/root 14450 2006-04-06 01:05 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.blksort -rw-r--r-- root/root 2637 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.blocks -rw-r--r-- root/root 214 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.cs -rw-r--r-- root/root 56 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.err -rw-r--r-- root/root 13913 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleA.blk.bli -rw-r--r-- root/root 10798 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleB.blk.bli -rw-r--r-- root/root 10798 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleC.blk.bli -rw-r--r-- root/root 11154 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleD.blk.bli -rw-r--r-- root/root 13111 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleE.blk.bli -rw-r--r-- root/root 45 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/multimat.dat -rw-r--r-- root/root 116 2006-04-06 01:06 ./usr/share/doc/blimps-examples/examples/blimps/distribution/multimat.example.cs -rw-r--r-- root/root 140 2006-04-06 01:06 ./usr/share/doc/blimps-examples/examples/blimps/distribution/multimat.example.err -rw-r--r-- root/root 107920 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/multimat.out -rw-r--r-- root/root 397 1995-09-28 00:06 ./usr/share/doc/blimps-examples/examples/blimps/example.pro -rw-r--r-- root/root 70631 1999-07-04 22:03 ./usr/share/doc/blimps-examples/examples/blimps/example.pros -rw-r--r-- root/root 706 1996-04-10 18:04 ./usr/share/doc/blimps-examples/examples/blimps/exampleA.blk -rw-r--r-- root/root 642 1999-07-04 21:54 ./usr/share/doc/blimps-examples/examples/blimps/exampleA.cs -rw-r--r-- root/root 421 1996-04-10 18:04 ./usr/share/doc/blimps-examples/examples/blimps/exampleB.blk -rw-r--r-- root/root 421 1996-04-10 18:05 ./usr/share/doc/blimps-examples/examples/blimps/exampleC.blk -rw-r--r-- root/root 454 1996-04-10 18:05 ./usr/share/doc/blimps-examples/examples/blimps/exampleD.blk -rw-r--r-- root/root 635 1996-04-10 18:05 ./usr/share/doc/blimps-examples/examples/blimps/exampleE.blk -rw-r--r-- root/root 1250 2003-12-04 22:02 ./usr/share/doc/blimps-examples/examples/blimps/lipo.pros -rwxr-xr-x root/root 1440 2000-06-14 19:09 ./usr/share/doc/blimps-examples/examples/blimps/multimat.csh -rw-r--r-- root/root 9232 2000-05-28 16:02 ./usr/share/doc/blimps-examples/examples/blimps/repeats.dat -rw-r--r-- root/root 254475 2003-12-04 21:58 ./usr/share/doc/blimps-examples/examples/blimps/sample.blocks -rw-r--r-- root/root 2269 2003-12-04 22:16 ./usr/share/doc/blimps-examples/examples/blimps/sample.pros -rwxr-xr-x root/root 2428 2003-09-30 21:44 ./usr/share/doc/blimps-examples/examples/blimps/www-search.pl drwxr-xr-x root/root 0 2006-04-06 00:53 ./usr/share/doc/blimps-examples/examples/cobbler/ -rw-r--r-- root/root 589 2006-04-06 00:53 ./usr/share/doc/blimps-examples/examples/cobbler/README -rw-r--r-- root/root 1390 1993-01-27 18:28 ./usr/share/doc/blimps-examples/examples/cobbler/blosum55.iij -rw-r--r-- root/root 1752 1993-01-27 18:28 ./usr/share/doc/blimps-examples/examples/cobbler/blosum55.qij -rwxr-xr-x root/root 299 2006-04-06 00:53 ./usr/share/doc/blimps-examples/examples/cobbler/cobbler.csh -rw-r--r-- root/root 1331 1999-01-27 19:07 ./usr/share/doc/blimps-examples/examples/cobbler/default.amino.frq -rw-r--r-- root/root 1059 1993-08-30 18:39 ./usr/share/doc/blimps-examples/examples/cobbler/default.codon.frq -rw-r--r-- root/root 1390 1993-01-27 17:56 ./usr/share/doc/blimps-examples/examples/cobbler/default.iij -rw-r--r-- root/root 1752 1993-01-27 17:56 ./usr/share/doc/blimps-examples/examples/cobbler/default.qij drwxr-xr-x root/root 0 2006-04-06 00:52 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/ -rw-r--r-- root/root 358 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/psi-blast.cob -rw-r--r-- root/root 46372 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/psi-blast.cob.prf -rw-r--r-- root/root 416 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/psi-blast.sq.cob -rw-r--r-- root/root 55710 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/psi-blast.sq.cob.prf -rw-r--r-- root/root 459 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/swat.cob -rw-r--r-- root/root 41397 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/swat.cob.prf -rw-r--r-- root/root 416 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/swat.sq.cob -rw-r--r-- root/root 36839 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/swat.sq.cob.prf -rw-r--r-- root/root 907 1999-10-05 20:20 ./usr/share/doc/blimps-examples/examples/cobbler/psi-blast.cf -rw-r--r-- root/root 812 1999-10-05 20:22 ./usr/share/doc/blimps-examples/examples/cobbler/psi-blast.sq.cf -rw-r--r-- root/root 5218 1996-05-24 01:52 ./usr/share/doc/blimps-examples/examples/cobbler/single55.mat -rw-r--r-- root/root 5220 1999-07-05 05:24 ./usr/share/doc/blimps-examples/examples/cobbler/single55.psi -rw-r--r-- root/root 5222 1999-07-11 05:17 ./usr/share/doc/blimps-examples/examples/cobbler/single62.mat -rw-r--r-- root/root 5220 1999-07-10 21:54 ./usr/share/doc/blimps-examples/examples/cobbler/single62.psi -rw-r--r-- root/root 866 1999-10-05 20:14 ./usr/share/doc/blimps-examples/examples/cobbler/swat.cf -rw-r--r-- root/root 782 1999-10-05 20:15 ./usr/share/doc/blimps-examples/examples/cobbler/swat.sq.cf -rw-r--r-- root/root 8757 1996-06-30 22:49 ./usr/share/doc/blimps-examples/examples/cobbler/test.blks -rw-r--r-- root/root 493 1998-07-02 16:06 ./usr/share/doc/blimps-examples/examples/cobbler/test.pro -rw-r--r-- root/root 20444 1995-11-30 01:25 ./usr/share/doc/blimps-examples/examples/cobbler/test.pros drwxr-xr-x root/root 0 2006-04-06 00:57 ./usr/share/doc/blimps-examples/examples/codehop/ -rw-r--r-- root/root 611 2001-08-11 16:07 ./usr/share/doc/blimps-examples/examples/codehop/README -rwxr-xr-x root/root 784 2006-04-06 00:55 ./usr/share/doc/blimps-examples/examples/codehop/codehop.csh -rwxr-xr-x root/root 7736 2004-02-04 20:32 ./usr/share/doc/blimps-examples/examples/codehop/coduse.csh drwxr-xr-x root/root 0 2006-04-06 00:57 ./usr/share/doc/blimps-examples/examples/codehop/distribution/ -rw-r--r-- root/root 8078 2006-04-06 00:55 ./usr/share/doc/blimps-examples/examples/codehop/distribution/euk.out -rw-r--r-- root/root 4954 1997-08-05 14:53 ./usr/share/doc/blimps-examples/examples/codehop/euk.blks drwxr-xr-x root/root 0 2007-05-22 16:04 ./usr/share/doc/blimps-examples/examples/processor/ -rw-r--r-- root/root 183 2006-04-06 01:00 ./usr/share/doc/blimps-examples/examples/processor/README -rwxr-xr-x root/root 594 2005-07-04 14:43 ./usr/share/doc/blimps-examples/examples/processor/calibrate.csh -rw-r--r-- root/root 2552 2005-07-04 14:42 ./usr/share/doc/blimps-examples/examples/processor/clustal.in drwxr-xr-x root/root 0 2007-05-22 16:04 ./usr/share/doc/blimps-examples/examples/processor/distribution/ -rw-r--r-- root/root 2972 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.blks -rw-r--r-- root/root 69764 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.blks.cum -rw-r--r-- root/root 2822 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.cblks -rw-r--r-- root/root 1992 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.seqs -rw-r--r-- root/root 2825 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.wblks -rw-r--r-- root/root 2634 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.blks -rw-r--r-- root/root 2480 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.cblks -rw-r--r-- root/root 1141 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.seqs -rw-r--r-- root/root 2486 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/fasta.in.wblks -rw-r--r-- root/root 11220 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/msf.in.blks -rw-r--r-- root/root 10224 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/msf.in.cblks -rw-r--r-- root/root 7031 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/msf.in.seqs -rw-r--r-- root/root 10230 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/msf.in.wblks -rw-r--r-- root/root 2670 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.blks -rw-r--r-- root/root 2516 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.cblks -rw-r--r-- root/root 1141 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.seqs -rw-r--r-- root/root 2522 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/stockholm.in.wblks -rw-r--r-- root/root 1109 2005-07-04 14:41 ./usr/share/doc/blimps-examples/examples/processor/fasta.in -rw-r--r-- root/root 8933 2005-07-04 14:42 ./usr/share/doc/blimps-examples/examples/processor/msf.in -rwxr-xr-x root/root 639 2006-04-06 00:26 ./usr/share/doc/blimps-examples/examples/processor/process.csh -rw-r--r-- root/root 1394 2005-07-04 14:42 ./usr/share/doc/blimps-examples/examples/processor/stockholm.in -rwxr-xr-x root/root 161 2007-05-22 15:57 ./usr/share/doc/blimps-examples/examples/processor/test.csh drwxr-xr-x root/root 0 2006-05-10 18:51 ./usr/share/doc/blimps-examples/examples/protomat/ -rw-r--r-- root/root 566 2001-08-11 16:09 ./usr/share/doc/blimps-examples/examples/protomat/README -rwxr-xr-x root/root 1277 2003-08-28 23:14 ./usr/share/doc/blimps-examples/examples/protomat/calibrate.csh drwxr-xr-x root/root 0 2006-04-06 00:45 ./usr/share/doc/blimps-examples/examples/protomat/distribution/ -rw-r--r-- root/root 731 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.mblks -rw-r--r-- root/root 257 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.mcob -rw-r--r-- root/root 204 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.mmap -rw-r--r-- root/root 4162 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.mmast -rw-r--r-- root/root 780 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.out -rw-r--r-- root/root 1251 1996-12-22 22:09 ./usr/share/doc/blimps-examples/examples/protomat/lipo.pros -rwxr-xr-x root/root 3083 2006-04-06 00:35 ./usr/share/doc/blimps-examples/examples/protomat/protomat.csh blimps-utils_3.9+ds-1_armhf.deb ------------------------------- new debian package, version 2.0. size 234288 bytes: control archive=2824 bytes. 671 bytes, 16 lines control 6679 bytes, 85 lines md5sums Package: blimps-utils Source: blimps Version: 3.9+ds-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 537 Depends: libblimps3 (>= 3.9+ds), libc6 (>= 2.4) Section: non-free/science Priority: optional Homepage: https://web.archive.org/web/20170606235903/http://blocks.fhcrc.org/blocks/uploads/blimps/ Description: blocks database improved searcher BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package contains the binaries. drwxr-xr-x root/root 0 2019-01-11 13:16 ./ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/bin/ -rwxr-xr-x root/root 13080 2019-01-11 13:16 ./usr/bin/fastaseqs drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/blimps/ drwxr-xr-x root/root 0 2006-04-06 00:22 ./usr/share/blimps/docs/ -rw-r--r-- root/root 1490 2004-09-15 00:46 ./usr/share/blimps/docs/arab.codon.use -rw-r--r-- root/root 1390 2003-10-15 23:00 ./usr/share/blimps/docs/blosum55.iij -rw-r--r-- root/root 1752 2003-10-15 23:00 ./usr/share/blimps/docs/blosum55.qij -rw-r--r-- root/root 1027 2003-10-20 23:46 ./usr/share/blimps/docs/blosum62.mat -rw-r--r-- root/root 1803 2003-10-20 21:39 ./usr/share/blimps/docs/colors -rw-r--r-- root/root 1579 2003-10-15 23:08 ./usr/share/blimps/docs/default.amino.frq -rw-r--r-- root/root 1291 2003-10-15 23:08 ./usr/share/blimps/docs/default.codon.frq -rw-r--r-- root/root 1483 2004-09-15 00:46 ./usr/share/blimps/docs/default.codon.use -rw-r--r-- root/root 1390 2003-10-15 23:00 ./usr/share/blimps/docs/default.consensus.iij -rw-r--r-- root/root 4178 2003-10-29 02:15 ./usr/share/blimps/docs/default.diri -rw-r--r-- root/root 1390 2003-10-15 23:00 ./usr/share/blimps/docs/default.embed.iij -rw-r--r-- root/root 2765 2003-10-15 23:00 ./usr/share/blimps/docs/default.embed.mat -rw-r--r-- root/root 1752 2003-10-15 23:00 ./usr/share/blimps/docs/default.embed.qij -rw-r--r-- root/root 1390 2003-10-15 23:00 ./usr/share/blimps/docs/default.iij -rw-r--r-- root/root 2765 2003-10-15 23:00 ./usr/share/blimps/docs/default.mat -rw-r--r-- root/root 1752 2003-10-15 23:00 ./usr/share/blimps/docs/default.qij -rw-r--r-- root/root 2264 2003-10-29 02:42 ./usr/share/blimps/docs/default.sij -rw-r--r-- root/root 5934 2003-10-20 23:47 ./usr/share/blimps/docs/fontfile -rw-r--r-- root/root 1251 2003-10-15 23:08 ./usr/share/blimps/docs/identity.frq -rw-r--r-- root/root 2520 2003-10-15 23:00 ./usr/share/blimps/docs/single50.mat -rw-r--r-- root/root 2208 2003-10-15 23:00 ./usr/share/blimps/docs/single55.iij -rw-r--r-- root/root 5218 2003-10-15 23:00 ./usr/share/blimps/docs/single55.mat -rw-r--r-- root/root 5220 2003-10-15 23:00 ./usr/share/blimps/docs/single55.psi -rw-r--r-- root/root 2208 2003-10-15 23:00 ./usr/share/blimps/docs/single62.iij -rw-r--r-- root/root 5222 2003-10-15 23:00 ./usr/share/blimps/docs/single62.mat -rw-r--r-- root/root 5220 2003-10-15 23:00 ./usr/share/blimps/docs/single62.psi drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc-base/ -rw-r--r-- root/root 433 2019-01-11 13:16 ./usr/share/doc-base/blimps-utils drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/blimps-utils/ -rw-r--r-- root/root 1518 2007-05-22 15:29 ./usr/share/doc/blimps-utils/README -rw-r--r-- root/root 502 2019-01-11 13:16 ./usr/share/doc/blimps-utils/README.Debian -rw-r--r-- root/root 1893 2007-05-22 15:32 ./usr/share/doc/blimps-utils/UPDATES.gz lrwxrwxrwx root/root 0 2019-01-11 13:16 ./usr/share/doc/blimps-utils/changelog.Debian.gz -> ../libblimps3/changelog.Debian.gz -rw-r--r-- root/root 6796 2019-01-11 13:16 ./usr/share/doc/blimps-utils/copyright drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/blimps-utils/html/ -rw-r--r-- root/root 1412 2003-11-13 22:56 ./usr/share/doc/blimps-utils/html/addseqs.html -rw-r--r-- root/root 2595 2003-11-13 22:56 ./usr/share/doc/blimps-utils/html/biased_blocks.html -rw-r--r-- root/root 2595 2003-11-13 22:56 ./usr/share/doc/blimps-utils/html/biassed_blocks.html -rw-r--r-- root/root 984 2003-11-13 22:57 ./usr/share/doc/blimps-utils/html/blalign.html -rw-r--r-- root/root 2528 2003-11-13 23:31 ./usr/share/doc/blimps-utils/html/block_formatter.html -rw-r--r-- root/root 4397 2004-11-30 23:24 ./usr/share/doc/blimps-utils/html/blocks_biblio.html -rw-r--r-- root/root 5819 2003-10-21 18:13 ./usr/share/doc/blimps-utils/html/blocks_format.html -rw-r--r-- root/root 5255 2003-11-24 22:29 ./usr/share/doc/blimps-utils/html/blocks_release.html -rw-r--r-- root/root 5166 2006-03-15 23:21 ./usr/share/doc/blimps-utils/html/blocks_search.html -rw-r--r-- root/root 1426 2003-11-13 22:58 ./usr/share/doc/blimps-utils/html/cobbler.html -rw-r--r-- root/root 16410 2006-03-09 16:22 ./usr/share/doc/blimps-utils/html/codehop.html -rw-r--r-- root/root 1317 2005-12-06 15:09 ./usr/share/doc/blimps-utils/html/contact.html -rw-r--r-- root/root 1211 2003-11-13 22:58 ./usr/share/doc/blimps-utils/html/diy.html -rw-r--r-- root/root 856 2006-03-15 22:11 ./usr/share/doc/blimps-utils/html/getblock.html drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/blimps-utils/html/help/ -rw-r--r-- root/root 49461 2003-12-01 21:32 ./usr/share/doc/blimps-utils/html/help/LAMA_help.html -rw-r--r-- root/root 793 2003-10-16 20:28 ./usr/share/doc/blimps-utils/html/help/PSSM_def.html -rw-r--r-- root/root 129 2003-10-16 20:28 ./usr/share/doc/blimps-utils/html/help/PSSM_pict.html -rw-r--r-- root/root 835 2003-10-21 18:08 ./usr/share/doc/blimps-utils/html/help/about_addseqs.html -rw-r--r-- root/root 1452 2003-10-21 18:09 ./usr/share/doc/blimps-utils/html/help/about_blimps.html -rw-r--r-- root/root 2483 2003-11-13 23:16 ./usr/share/doc/blimps-utils/html/help/about_blocks.html -rw-r--r-- root/root 1479 2003-10-21 18:05 ./usr/share/doc/blimps-utils/html/help/about_cobbler.html -rw-r--r-- root/root 1153 2003-10-16 20:28 ./usr/share/doc/blimps-utils/html/help/about_colors.html -rw-r--r-- root/root 620 2003-10-21 18:04 ./usr/share/doc/blimps-utils/html/help/about_diy.html -rw-r--r-- root/root 3888 2003-12-01 21:34 ./usr/share/doc/blimps-utils/html/help/about_impala.html -rw-r--r-- root/root 3186 2003-11-13 23:00 ./usr/share/doc/blimps-utils/html/help/about_logos.html -rw-r--r-- root/root 387 2003-10-21 18:09 ./usr/share/doc/blimps-utils/html/help/about_maps.html -rw-r--r-- root/root 1151 2003-10-21 18:10 ./usr/share/doc/blimps-utils/html/help/about_rpsblast.html -rw-r--r-- root/root 4578 2003-11-13 23:00 ./usr/share/doc/blimps-utils/html/help/about_trees.html -rw-r--r-- root/root 4733 2006-03-03 19:02 ./usr/share/doc/blimps-utils/html/help/biased_list.html -rw-r--r-- root/root 13533 2003-10-16 20:28 ./usr/share/doc/blimps-utils/html/help/blkprob-aa.html -rw-r--r-- root/root 12376 2003-10-16 20:28 ./usr/share/doc/blimps-utils/html/help/blkprob-dna.html -rw-r--r-- root/root 12846 2003-10-16 20:28 ./usr/share/doc/blimps-utils/html/help/blkprob.html -rw-r--r-- root/root 5820 2003-12-01 21:33 ./usr/share/doc/blimps-utils/html/help/blocks_format.html -rw-r--r-- root/root 5388 2006-03-12 19:09 ./usr/share/doc/blimps-utils/html/help/blocks_release.html -rw-r--r-- root/root 3545 2003-10-16 20:28 ./usr/share/doc/blimps-utils/html/help/email.html -rw-r--r-- root/root 6023 2003-11-13 23:02 ./usr/share/doc/blimps-utils/html/help/formatter_help.html -rw-r--r-- root/root 15196 2003-12-01 21:32 ./usr/share/doc/blimps-utils/html/help/help.html -rw-r--r-- root/root 648 2003-10-21 18:17 ./usr/share/doc/blimps-utils/html/help/index.html -rw-r--r-- root/root 75265 2006-03-08 22:09 ./usr/share/doc/blimps-utils/html/help/names.all.gz -rw-r--r-- root/root 20563 2006-03-08 22:10 ./usr/share/doc/blimps-utils/html/help/names.prints.gz -rw-r--r-- root/root 58283 2006-03-13 04:47 ./usr/share/doc/blimps-utils/html/help/names.protomat.gz -rw-r--r-- root/root 1845 2003-11-12 22:03 ./usr/share/doc/blimps-utils/html/impala.html -rw-r--r-- root/root 3630 2006-03-15 23:10 ./usr/share/doc/blimps-utils/html/index.html -rw-r--r-- root/root 5636 2006-03-14 00:03 ./usr/share/doc/blimps-utils/html/license.html -rw-r--r-- root/root 3751 2006-03-15 23:25 ./usr/share/doc/blimps-utils/html/make_blocks.html -rw-r--r-- root/root 2427 2003-11-13 23:12 ./usr/share/doc/blimps-utils/html/narrow.html -rw-r--r-- root/root 699 2003-10-15 02:19 ./usr/share/doc/blimps-utils/html/oligo_melt.html -rw-r--r-- root/root 10530 2006-02-14 18:35 ./usr/share/doc/blimps-utils/html/papers.html -rw-r--r-- root/root 2703 2003-11-13 22:55 ./usr/share/doc/blimps-utils/html/process_blocks.html -rw-r--r-- root/root 2031 2003-11-12 22:04 ./usr/share/doc/blimps-utils/html/rpsblast.html -rw-r--r-- root/root 1047 2019-01-11 13:16 ./usr/share/doc/blimps-utils/html/thanks.html -rw-r--r-- root/root 2362 2006-03-12 19:28 ./usr/share/doc/blimps-utils/html/whats_new.html drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/man/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/man/man1/ -rw-r--r-- root/root 2039 2019-01-11 13:16 ./usr/share/man/man1/fastaseqs.1.gz libblimps3-dev_3.9+ds-1_armhf.deb --------------------------------- new debian package, version 2.0. size 85812 bytes: control archive=1452 bytes. 795 bytes, 19 lines control 1658 bytes, 26 lines md5sums Package: libblimps3-dev Source: blimps Version: 3.9+ds-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 303 Depends: libblimps3 (= 3.9+ds-1) Suggests: blimps-utils Conflicts: libblimps-dev Provides: libblimps-dev Section: non-free/libdevel Priority: optional Homepage: https://web.archive.org/web/20170606235903/http://blocks.fhcrc.org/blocks/uploads/blimps/ Description: blocks database improved searcher library (development) BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package provides the library development headers and the static library. drwxr-xr-x root/root 0 2019-01-11 13:16 ./ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/include/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/include/blimps/ -rw-r--r-- root/root 3189 2019-01-11 13:16 ./usr/include/blimps/aabet.h -rw-r--r-- root/root 1400 2019-01-11 13:16 ./usr/include/blimps/alphabet.h -rw-r--r-- root/root 6306 2019-01-11 13:16 ./usr/include/blimps/blastapp.h -rw-r--r-- root/root 5088 2019-01-11 13:16 ./usr/include/blimps/blocks.h -rw-r--r-- root/root 434 2019-01-11 13:16 ./usr/include/blimps/blocksprogs.h -rw-r--r-- root/root 5188 2019-01-11 13:16 ./usr/include/blimps/convert.h -rw-r--r-- root/root 3386 2019-01-11 13:16 ./usr/include/blimps/errors.h -rw-r--r-- root/root 4836 2019-01-11 13:16 ./usr/include/blimps/files.h -rw-r--r-- root/root 1660 2019-01-11 13:16 ./usr/include/blimps/frequency.h -rw-r--r-- root/root 4320 2019-01-11 13:16 ./usr/include/blimps/gcode.h -rw-r--r-- root/root 1312 2019-01-11 13:16 ./usr/include/blimps/global.h -rw-r--r-- root/root 6701 2019-01-11 13:16 ./usr/include/blimps/license.h -rw-r--r-- root/root 4904 2019-01-11 13:16 ./usr/include/blimps/matrix.h -rw-r--r-- root/root 4867 2019-01-11 13:16 ./usr/include/blimps/memory.h -rw-r--r-- root/root 7753 2019-01-11 13:16 ./usr/include/blimps/ntbet.h -rw-r--r-- root/root 3352 2019-01-11 13:16 ./usr/include/blimps/options.h -rw-r--r-- root/root 109 2019-01-11 13:16 ./usr/include/blimps/output.h -rw-r--r-- root/root 1450 2019-01-11 13:16 ./usr/include/blimps/pattern.h -rw-r--r-- root/root 11669 2019-01-11 13:16 ./usr/include/blimps/protomat.h -rw-r--r-- root/root 672 2019-01-11 13:16 ./usr/include/blimps/residues.h -rw-r--r-- root/root 9652 2019-01-11 13:16 ./usr/include/blimps/sequences.h -rw-r--r-- root/root 5586 2019-01-11 13:16 ./usr/include/blimps/skiplist.h -rw-r--r-- root/root 2770 2019-01-11 13:16 ./usr/include/blimps/strutil.h -rw-r--r-- root/root 3857 2019-01-11 13:16 ./usr/include/blimps/version.h drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 176466 2019-01-11 13:16 ./usr/lib/arm-linux-gnueabihf/libblimps.a lrwxrwxrwx root/root 0 2019-01-11 13:16 ./usr/lib/arm-linux-gnueabihf/libblimps.so -> libblimps.so.3.0.0 drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/libblimps3-dev/ lrwxrwxrwx root/root 0 2019-01-11 13:16 ./usr/share/doc/libblimps3-dev/changelog.Debian.gz -> ../libblimps3/changelog.Debian.gz -rw-r--r-- root/root 6796 2019-01-11 13:16 ./usr/share/doc/libblimps3-dev/copyright libblimps3_3.9+ds-1_armhf.deb ----------------------------- new debian package, version 2.0. size 55828 bytes: control archive=912 bytes. 680 bytes, 17 lines control 229 bytes, 3 lines md5sums 35 bytes, 1 lines shlibs 70 bytes, 2 lines triggers Package: libblimps3 Source: blimps Version: 3.9+ds-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 125 Depends: libc6 (>= 2.11) Suggests: blimps-utils Section: non-free/libs Priority: optional Homepage: https://web.archive.org/web/20170606235903/http://blocks.fhcrc.org/blocks/uploads/blimps/ Description: blocks database improved searcher library BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package provides the shared library. drwxr-xr-x root/root 0 2019-01-11 13:16 ./ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2019-01-11 13:16 ./usr/lib/arm-linux-gnueabihf/libblimps.so.3 -> libblimps.so.3.0.0 -rw-r--r-- root/root 108328 2019-01-11 13:16 ./usr/lib/arm-linux-gnueabihf/libblimps.so.3.0.0 drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-01-11 13:16 ./usr/share/doc/libblimps3/ -rw-r--r-- root/root 608 2019-01-11 13:16 ./usr/share/doc/libblimps3/changelog.Debian.gz -rw-r--r-- root/root 6796 2019-01-11 13:16 ./usr/share/doc/libblimps3/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 18600 Build-Time: 61 Distribution: disco-proposed Host Architecture: armhf Install-Time: 19 Job: blimps_3.9+ds-1.dsc Machine Architecture: arm64 Package: blimps Package-Time: 81 Source-Version: 3.9+ds-1 Space: 18600 Status: successful Version: 3.9+ds-1 -------------------------------------------------------------------------------- Finished at 20190111-2058 Build needed 00:01:21, 18600k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=armhf PACKAGEBUILD-16264982 Scanning for processes to kill in build PACKAGEBUILD-16264982