RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux z13-003 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:39 UTC 2017 s390x Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Dec 17:10:38 ntpdate[20569]: adjust time server 10.211.37.1 offset 0.000467 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13819848 /home/buildd/filecache-default/c63540de4962374dad549ddd7685c5c502845718 Creating target for build PACKAGEBUILD-13819848 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13819848 Starting target for build PACKAGEBUILD-13819848 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13819848 'deb http://ftpmaster.internal/ubuntu bionic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-13819848 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13819848 Updating target for build PACKAGEBUILD-13819848 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x Packages [951 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [522 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/restricted Translation-en [2788 B] Get:8 http://ftpmaster.internal/ubuntu bionic/universe s390x Packages [7989 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4890 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/multiverse s390x Packages [124 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/multiverse Translation-en [109 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x Packages [34.0 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [19.9 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/universe s390x Packages [116 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [77.5 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/multiverse s390x Packages [696 B] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/multiverse Translation-en [656 B] Fetched 15.3 MB in 5s (2756 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils binutils-common binutils-s390x-linux-gnu bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libidn2-0 libip4tc0 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmount1 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libudev1 libuuid1 linux-libc-dev mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 94 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 51.4 MB of archives. After this operation, 626 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main s390x base-files s390x 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main s390x bsdutils s390x 1:2.30.2-0.1ubuntu1 [57.9 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x coreutils s390x 8.26-3ubuntu4 [1197 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x debianutils s390x 4.8.3 [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x dpkg s390x 1.19.0.4ubuntu1 [1122 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main s390x libc6-dev s390x 2.26-0ubuntu2 [2022 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x libc-dev-bin s390x 2.26-0ubuntu2 [62.8 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x linux-libc-dev s390x 4.13.0-18.21 [962 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x libgomp1 s390x 7.2.0-16ubuntu1 [70.0 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x libitm1 s390x 7.2.0-16ubuntu1 [27.0 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-7-base s390x 7.2.0-16ubuntu1 [18.5 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main s390x libgcc1 s390x 1:7.2.0-16ubuntu1 [25.2 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x libatomic1 s390x 7.2.0-16ubuntu1 [8236 B] Get:14 http://ftpmaster.internal/ubuntu bionic/main s390x cpp-7 s390x 7.2.0-16ubuntu1 [5172 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x libcc1-0 s390x 7.2.0-16ubuntu1 [37.7 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x g++-7 s390x 7.2.0-16ubuntu1 [5969 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x gcc-7 s390x 7.2.0-16ubuntu1 [5839 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x libgcc-7-dev s390x 7.2.0-16ubuntu1 [279 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x libstdc++-7-dev s390x 7.2.0-16ubuntu1 [1446 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x libstdc++6 s390x 7.2.0-16ubuntu1 [400 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libgmp10 s390x 2:6.1.2+dfsg-1.1 [225 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x libbinutils s390x 2.29.1-10ubuntu1 [305 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x binutils s390x 2.29.1-10ubuntu1 [3352 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x binutils-common s390x 2.29.1-10ubuntu1 [190 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x binutils-s390x-linux-gnu s390x 2.29.1-10ubuntu1 [1696 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x libc6 s390x 2.26-0ubuntu2 [2342 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x e2fslibs s390x 1.43.7-1 [153 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x e2fsprogs s390x 1.43.7-1 [477 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main s390x findutils s390x 4.6.0+git+20170828-2 [287 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x perl-modules-5.26 all 5.26.1-3 [2761 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main s390x libperl5.26 s390x 5.26.1-3 [3372 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main s390x perl s390x 5.26.1-3 [201 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main s390x perl-base s390x 5.26.1-3 [1310 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main s390x libuuid1 s390x 2.30.2-0.1ubuntu1 [14.9 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main s390x libblkid1 s390x 2.30.2-0.1ubuntu1 [112 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main s390x libsmartcols1 s390x 2.30.2-0.1ubuntu1 [74.9 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main s390x libfdisk1 s390x 2.30.2-0.1ubuntu1 [145 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libpcre3 s390x 2:8.39-8 [154 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main s390x libselinux1 s390x 2.7-2 [64.0 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main s390x libmount1 s390x 2.30.2-0.1ubuntu1 [122 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main s390x fdisk s390x 2.30.2-0.1ubuntu1 [100 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main s390x util-linux s390x 2.30.2-0.1ubuntu1 [845 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main s390x base-passwd s390x 3.5.44 [46.2 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main s390x libc-bin s390x 2.26-0ubuntu2 [540 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main s390x sysvinit-utils s390x 2.88dsf-59.10ubuntu1 [18.2 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main s390x libudev1 s390x 235-3ubuntu2 [51.4 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main s390x libapt-pkg5.0 s390x 1.6~alpha5 [724 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main s390x libgpg-error0 s390x 1.27-5 [35.4 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main s390x libgcrypt20 s390x 1.8.1-4 [350 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main s390x gpgv s390x 2.1.15-1ubuntu8 [171 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main s390x libseccomp2 s390x 2.3.1-2.1ubuntu3 [40.8 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main s390x apt s390x 1.6~alpha5 [1111 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main s390x debconf all 1.5.65 [124 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main s390x libapparmor1 s390x 2.11.0-2ubuntu18 [27.8 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main s390x libcap2 s390x 1:2.25-1.2 [13.2 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main s390x libip4tc0 s390x 1.6.1-2ubuntu2 [19.3 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main s390x mount s390x 2.30.2-0.1ubuntu1 [106 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main s390x systemd s390x 235-3ubuntu2 [2569 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main s390x libsystemd0 s390x 235-3ubuntu2 [180 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main s390x systemd-sysv s390x 235-3ubuntu2 [13.1 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main s390x libcap-ng0 s390x 0.7.7-3.1 [10.7 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main s390x libcomerr2 s390x 1.43.7-1 [11.3 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main s390x libsemanage-common all 2.7-2 [6916 B] Get:64 http://ftpmaster.internal/ubuntu bionic/main s390x libsemanage1 s390x 2.7-2 [78.6 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main s390x libss2 s390x 1.43.7-1 [10.7 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main s390x libnettle6 s390x 3.3-2 [103 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main s390x libhogweed4 s390x 3.3-2 [134 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main s390x libp11-kit0 s390x 0.23.9-2 [188 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main s390x libtasn1-6 s390x 4.12-3 [34.2 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main s390x sensible-utils all 0.0.11 [14.8 kB] Get:71 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libassuan0 s390x 2.4.5-1 [31.9 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main s390x pinentry-curses s390x 1.0.0-3 [33.3 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main s390x libnpth0 s390x 1.5-3 [7512 B] Get:74 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg s390x 2.1.15-1ubuntu8 [733 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main s390x gnupg-agent s390x 2.1.15-1ubuntu8 [233 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main s390x libsqlite3-0 s390x 3.21.0-1 [460 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main s390x libssl1.0.0 s390x 1.0.2g-1ubuntu14 [771 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main s390x multiarch-support s390x 2.26-0ubuntu2 [6832 B] Get:79 http://ftpmaster.internal/ubuntu bionic/main s390x openssl s390x 1.0.2g-1ubuntu14 [477 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main s390x tzdata all 2017c-1 [188 kB] Get:81 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libgssapi-krb5-2 s390x 1.15.2-2 [109 kB] Get:82 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libkrb5-3 s390x 1.15.2-2 [261 kB] Get:83 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libkrb5support0 s390x 1.15.2-2 [30.7 kB] Get:84 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libk5crypto3 s390x 1.15.2-2 [84.0 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main s390x libkeyutils1 s390x 1.5.9-9.2ubuntu1 [9092 B] Get:86 http://ftpmaster.internal/ubuntu bionic/main s390x libidn2-0 s390x 2.0.4-1 [91.2 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main s390x libpng16-16 s390x 1.6.34-1 [171 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/universe s390x apt-transport-https all 1.6~alpha5 [1692 B] Get:89 http://ftpmaster.internal/ubuntu bionic/main s390x dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main s390x libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main s390x build-essential s390x 12.4ubuntu1 [4754 B] Get:92 http://ftpmaster.internal/ubuntu bionic/main s390x libpsl5 s390x 0.19.1-4 [40.9 kB] Get:93 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libcurl3-gnutls s390x 7.55.1-1ubuntu3 [177 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main s390x optipng s390x 0.7.6-1ubuntu1 [81.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 51.4 MB in 4s (12.2 MB/s) (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_s390x.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.30.2-0.1ubuntu1_s390x.deb ... Unpacking bsdutils (1:2.30.2-0.1ubuntu1) over (1:2.30.1-0ubuntu4) ... Setting up bsdutils (1:2.30.2-0.1ubuntu1) ... (Reading database ... 12436 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_s390x.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12436 files and directories currently installed.) 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Setting up tzdata (2017c-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 5 17:11:02 UTC 2017. Universal Time is now: Tue Dec 5 17:11:02 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (235-3ubuntu2) ... Setting up linux-libc-dev:s390x (4.13.0-18.21) ... Setting up perl-modules-5.26 (5.26.1-3) ... Setting up libkrb5support0:s390x (1.15.2-2) ... Setting up optipng (0.7.6-1ubuntu1) ... Setting up cpp-7 (7.2.0-16ubuntu1) ... Setting up binutils-common:s390x (2.29.1-10ubuntu1) ... Setting up sensible-utils (0.0.11) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libperl5.26:s390x (5.26.1-3) ... Setting up openssl (1.0.2g-1ubuntu14) ... Setting up libsqlite3-0:s390x (3.21.0-1) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up libkeyutils1:s390x (1.5.9-9.2ubuntu1) ... Setting up libc6-dev:s390x (2.26-0ubuntu2) ... Setting up libassuan0:s390x (2.4.5-1) ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13819848 s390x bionic-proposed -c chroot:build-PACKAGEBUILD-13819848 --arch=s390x --dist=bionic-proposed --nolog blimps_3.9-3.dsc Initiating build PACKAGEBUILD-13819848 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:39 UTC 2017 s390x sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on z13-003.buildd +==============================================================================+ | blimps 3.9-3 (s390x) 05 Dec 2017 17:11 | +==============================================================================+ Package: blimps Version: 3.9-3 Source Version: 3.9-3 Distribution: bionic-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x I: NOTICE: Log filtering will replace 'build/blimps-i_5HvP/blimps-3.9' with '<>' I: NOTICE: Log filtering will replace 'build/blimps-i_5HvP' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13819848/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- blimps_3.9-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-WqBV7b/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-WqBV7b/apt_archive ./ InRelease Get:2 copy:/<>/resolver-WqBV7b/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-WqBV7b/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-WqBV7b/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-WqBV7b/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (231 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-WqBV7b/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12437 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10) Filtered Build-Depends: debhelper (>= 10) dpkg-deb: building package 'sbuild-build-depends-blimps-dummy' in '/<>/resolver-Cn5Pw5/apt_archive/sbuild-build-depends-blimps-dummy.deb'. Ign:1 copy:/<>/resolver-Cn5Pw5/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Cn5Pw5/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Cn5Pw5/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Cn5Pw5/apt_archive ./ Sources [208 B] Get:5 copy:/<>/resolver-Cn5Pw5/apt_archive ./ Packages [526 B] Fetched 2853 B in 0s (229 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install blimps build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libwind0-heimdal Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser apparmor libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-blimps-dummy 0 upgraded, 30 newly installed, 1 to remove and 0 not upgraded. Need to get 16.2 MB of archives. After this operation, 63.6 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Cn5Pw5/apt_archive ./ sbuild-build-depends-blimps-dummy 0.invalid.0 [856 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main s390x groff-base s390x 1.22.3-9 [1174 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main s390x libbsd0 s390x 0.8.6-3 [40.2 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main s390x bsdmainutils s390x 9.0.14ubuntu1 [178 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main s390x libpipeline1 s390x 1.5.0-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main s390x man-db s390x 2.7.6.1-4 [886 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic-mgc s390x 1:5.32-1 [185 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main s390x libmagic1 s390x 1:5.32-1 [66.9 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main s390x file s390x 1:5.32-1 [21.8 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main s390x libglib2.0-0 s390x 2.54.1-1ubuntu1 [1075 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main s390x libicu60 s390x 60.1-1ubuntu2 [7830 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main s390x libxml2 s390x 2.9.4+dfsg1-5.1ubuntu1 [593 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main s390x gettext-base s390x 0.19.8.1-4ubuntu1 [47.7 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main s390x libsigsegv2 s390x 2.11-1 [12.6 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main s390x m4 s390x 1.4.18-1 [195 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main s390x autoconf all 2.69-11 [322 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main s390x autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main s390x automake all 1:1.15.1-3ubuntu1 [509 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main s390x autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main s390x libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main s390x dh-autoreconf all 15 [15.8 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main s390x libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main s390x libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main s390x libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main s390x dh-strip-nondeterminism all 0.040-1 [5196 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main s390x libcroco3 s390x 0.6.12-1 [74.7 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main s390x gettext s390x 0.19.8.1-4ubuntu1 [1048 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main s390x intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main s390x po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main s390x debhelper all 10.10.9ubuntu1 [871 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.2 MB in 1s (10.3 MB/s) (Reading database ... 12437 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... 12428 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_s390x.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:s390x. Preparing to unpack .../01-libbsd0_0.8.6-3_s390x.deb ... Unpacking libbsd0:s390x (0.8.6-3) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.14ubuntu1_s390x.deb ... Unpacking bsdmainutils (9.0.14ubuntu1) ... Selecting previously unselected package libpipeline1:s390x. Preparing to unpack .../03-libpipeline1_1.5.0-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-4_s390x.deb ... Unpacking man-db (2.7.6.1-4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.32-1_s390x.deb ... 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Preparing to unpack .../29-sbuild-build-depends-blimps-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-blimps-dummy (0.invalid.0) ... Setting up libicu60:s390x (60.1-1ubuntu2) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:s390x (2.11-1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:s390x (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libpipeline1:s390x (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:s390x (0.8.6-3) ... Setting up libxml2:s390x (2.9.4+dfsg1-5.1ubuntu1) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:s390x (1:5.32-1) ... Setting up libcroco3:s390x (0.6.12-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up bsdmainutils (9.0.14ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (15) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up debhelper (10.10.9ubuntu1) ... Setting up sbuild-build-depends-blimps-dummy (0.invalid.0) ... (Reading database ... 14242 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic s390x (s390x) Toolchain package versions: binutils_2.29.1-10ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-16ubuntu1 gcc-7_7.2.0-16ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 linux-libc-dev_4.13.0-18.21 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-10ubuntu1 binutils-common_2.29.1-10ubuntu1 binutils-s390x-linux-gnu_2.29.1-10ubuntu1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-16ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.65 debhelper_10.10.9ubuntu1 debianutils_4.8.3 dh-autoreconf_15 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.7-1 e2fsprogs_1.43.7-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.2-0.1ubuntu1 file_1:5.32-1 findutils_4.6.0+git+20170828-2 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-16ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-16ubuntu1 gcc-7-base_7.2.0-16ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu18 libapt-pkg5.0_1.6~alpha5 libarchive-zip-perl_1.59-1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.5-1 libatomic1_7.2.0-16ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbinutils_2.29.1-10ubuntu1 libblkid1_2.30.2-0.1ubuntu1 libbsd0_0.8.6-3 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_7.2.0-16ubuntu1 libcomerr2_1.43.7-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3-gnutls_7.55.1-1ubuntu3 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.2-0.1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.040-1 libgcc-7-dev_7.2.0-16ubuntu1 libgcc1_1:7.2.0-16ubuntu1 libgcrypt20_1.8.1-4 libgdbm3_1.8.3-14 libglib2.0-0_2.54.1-1ubuntu1 libgmp10_2:6.1.2+dfsg-1.1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-16ubuntu1 libgpg-error0_1.27-5 libgssapi-krb5-2_1.15.2-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhx509-5-heimdal_7.4.0.dfsg.1-2 libicu60_60.1-1ubuntu2 libidn11_1.33-2 libidn2-0_2.0.4-1 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-1 libitm1_7.2.0-16ubuntu1 libk5crypto3_1.15.2-2 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.2-2 libkrb5support0_1.15.2-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.30.2-0.1ubuntu1 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-8 libperl5.26_5.26.1-3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.19.1-4 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.2-0.1ubuntu1 libsqlite3-0_3.21.0-1 libss2_1.43.7-1 libssl1.0.0_1.0.2g-1ubuntu14 libstdc++-7-dev_7.2.0-16ubuntu1 libstdc++6_7.2.0-16ubuntu1 libsystemd0_235-3ubuntu2 libtasn1-6_4.12-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libudev1_235-3ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.2-0.1ubuntu1 libwind0-heimdal_7.4.0.dfsg.1-2 libxml2_2.9.4+dfsg1-5.1ubuntu1 linux-libc-dev_4.13.0-18.21 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-4 mawk_1.3.3-17ubuntu2 mount_2.30.2-0.1ubuntu1 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu14 optipng_0.7.6-1ubuntu1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-blimps-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 systemd_235-3ubuntu2 systemd-sysv_235-3ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2017c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.2-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Dec 5 08:42:54 2017 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./blimps_3.9-3.dsc dpkg-source: info: extracting blimps in blimps-3.9 dpkg-source: info: unpacking blimps_3.9.orig.tar.gz dpkg-source: info: unpacking blimps_3.9-3.debian.tar.xz dpkg-source: info: applying patch001 Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13819848 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13819848 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13819848 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package blimps dpkg-buildpackage: info: source version 3.9-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build blimps-3.9 dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean dh_auto_clean make -j4 distclean make[1]: Entering directory '/<>' if [ -d blimps ]; then make -C blimps -f Makefile.Linux clean; fi if [ -d protomat ]; then make -C protomat -f Makefile.Linux clean; fi make[2]: Entering directory '/<>/protomat' /bin/rm -f *.o blksort getblock getseq multimat motifj motomat uextract blosum blastdat make[2]: Entering directory '/<>/blimps' rm -f blimps blweight blalign bldist blk2pssm rank_matrix retblock codehop htmlize-codehop oligo_melt mablock makeblockmap prints2blocks lisblk coduse narrow blkprob blk2slx LAMA find_biassed_blocks fastaseqs addseqs cobbler interpro pssmdist pssmBL papssm matrix_logob makelogob blocks_search LAMA_search block_vis format_block biassed_blocks_finder htmlize-LAMA show_aligned_blocks makelis blk2mot make[2]: Leaving directory '/<>/protomat' rm -f *.a *.o *~ if [ "." != "." ]; then rm -f -r .; fi rm -f ./libblimps.so* make[2]: Leaving directory '/<>/blimps' rm -f *.[12345678].gz if [ -d "blimps-3.9" ]; then rm -rf blimps-3.9; fi rm -rf \ blimps-3.9 \ blimps-3.9.tar.gz make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean blimps/deps.mk make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make -C blimps -f Makefile.Linux VERSION=3.9 make -C protomat -f Makefile.Linux VERSION=3.9 pod2man -c 'User Commands' -r "3.9" fastaseqs.pod | gzip -c > fastaseqs.1.gz make[2]: Entering directory '/<>/blimps' Makefile.Linux:722: deps.mk: No such file or directory make[2]: Entering directory '/<>/protomat' gcc -Wall -O2 -c blksort.c /usr/bin/gcc -MM -Wuninitialized -O2 -I../include -fpic blimps-mem.c blimps.c blweight.c blalign.c bldist.c blk2pssm.c rank_matrix.c retblock.c codehop.c htmlize-codehop.c oligo_melt.c mablock.c cobbler.c addseqs.c fastaseqs.c LAMA.c find_biassed_blocks.c makeblockmap.c prints2blocks.c lisblk.c coduse.c narrow.c blk2slx.c blkprob.c blocks.c config.c convert.c errors.c files.c frequency.c gcode.c lists.c matrix.c memory.c pattern.c scores.c scoring.c sequences.c sl.c strutil.c version.c options.c protomat.c interpro.c pssmdist.c pssmBL.c papssm.c matrix_logob.c makelogob.c blocks_search.c LAMA_search.c block_vis.c format_block.c biassed_blocks_finder.c htmlize-LAMA.c show_aligned_blocks.c blk2mot.c > deps.mk gcc -Wall -O2 -c motmisc.c motmisc.c:35:26: warning: missing braces around initializer [-Wmissing-braces] char bl60_matrix[21][21]={ ^ 12, 7, 7, 6, 7, 7, 7, 8, 7, 7, 7, 7, 7, 6, 8, 9, 8, 5, 6, 8, 8, /*A*/ { } 7,13, 8, 7, 5, 9, 8, 6, 8, 5, 6,10, 7, 6, 6, 7, 7, 6, 6, 6, 8, /*R*/ { } 7, 8,14, 9, 6, 8, 8, 8, 8, 5, 5, 8, 6, 5, 6, 9, 8, 6, 6, 5, 8, /*N*/ { } 6, 7, 9,14, 4, 8, 9, 7, 7, 5, 5, 7, 5, 5, 6, 8, 7, 4, 6, 5, 8, /*D*/ { } 7, 5, 6, 4,17, 6, 5, 6, 5, 7, 7, 5, 6, 6, 6, 7, 7, 5, 5, 7, 8, /*C*/ { } 7, 9, 8, 8, 6,13,10, 6, 9, 6, 6, 9, 8, 5, 7, 8, 7, 6, 6, 6, 8, /*Q*/ { } 7, 8, 8, 9, 5,10,13, 6, 8, 5, 6, 9, 6, 5, 7, 8, 7, 6, 6, 6, 8, { } 8, 6, 8, 7, 6, 6, 6,14, 6, 5, 5, 7, 5, 5, 6, 8, 7, 6, 5, 5, 8, { } 7, 8, 8, 7, 5, 9, 8, 6,15, 5, 5, 7, 6, 7, 6, 7, 6, 6, 9, 5, 8, { } 7, 5, 5, 5, 7, 6, 5, 5, 5,12,10, 6, 9, 8, 5, 6, 7, 6, 7,11, 8, { } 7, 6, 5, 5, 7, 6, 6, 5, 5,10,12, 6,10, 8, 6, 6, 7, 6, 7, 9, 8, { } 7,10, 8, 7, 5, 9, 9, 7, 7, 6, 6,12, 7, 5, 7, 8, 7, 5, 6, 6, 8, { } 7, 7, 6, 5, 6, 8, 6, 5, 6, 9,10, 7,14, 8, 6, 6, 7, 6, 7, 9, 8, { } 6, 6, 5, 5, 6, 5, 5, 5, 7, 8, 8, 5, 8,14, 5, 6, 6, 9,11, 7, 8, { } 8, 6, 6, 6, 6, 7, 7, 6, 6, 5, 6, 7, 6, 5,15, 7, 7, 5, 6, 6, 8, { } 9, 7, 9, 8, 7, 8, 8, 8, 7, 6, 6, 8, 6, 6, 7,12, 9, 6, 6, 6, 8, { } 8, 7, 8, 7, 7, 7, 7, 7, 6, 7, 7, 7, 7, 6, 7, 9,12, 6, 6, 8, 8, { } 5, 6, 6, 4, 5, 6, 6, 6, 6, 6, 6, 5, 6, 9, 5, 6, 6,18,10, 6, 8, { } 6, 6, 6, 6, 5, 6, 6, 5, 9, 7, 7, 6, 7,11, 6, 6, 6,10,15, 7, 8, { } 8, 6, 5, 5, 7, 6, 6, 5, 5,11, 9, 6, 9, 7, 6, 6, 8, 6, 7,12, 8, { } 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 0 /* X */ { }; } motmisc.c:63:26: warning: missing braces around initializer [-Wmissing-braces] char bl62_matrix[21][21]={ ^ 8, 3, 2, 2, 4, 3, 3, 4, 2, 3, 3, 3, 3, 2, 3, 5, 4, 1, 2, 4, 0, { } 3, 9, 4, 2, 1, 5, 4, 2, 4, 1, 2, 6, 3, 1, 2, 3, 3, 1, 2, 1, 0, { } 2, 4,10, 5, 1, 4, 4, 4, 5, 1, 1, 4, 2, 1, 2, 5, 4, 0, 2, 1, 0, { } 2, 2, 5,10, 1, 4, 6, 3, 3, 1, 0, 3, 1, 1, 3, 4, 3, 0, 1, 1, 0, { } 4, 1, 1, 1,13, 1, 0, 1, 1, 3, 3, 1, 3, 2, 1, 3, 3, 2, 2, 3, 0, { } 3, 5, 4, 4, 1, 9, 6, 2, 4, 1, 2, 5, 4, 1, 3, 4, 3, 2, 3, 2, 0, { } 3, 4, 4, 6, 0, 6, 9, 2, 4, 1, 1, 5, 2, 1, 3, 4, 3, 1, 2, 2, 0, { } 4, 2, 4, 3, 1, 2, 2,10, 2, 0, 0, 2, 1, 1, 2, 4, 2, 2, 1, 1, 0, { } 2, 4, 5, 3, 1, 4, 4, 2,12, 1, 1, 3, 2, 3, 2, 3, 2, 2, 6, 1, 0, { } 3, 1, 1, 1, 3, 1, 1, 0, 1, 8, 6, 1, 5, 4, 1, 2, 3, 1, 3, 7, 0, { } 3, 2, 1, 0, 3, 2, 1, 0, 1, 6, 8, 2, 6, 4, 1, 2, 3, 2, 3, 5, 0, { } 3, 6, 4, 3, 1, 5, 5, 2, 3, 1, 2, 9, 3, 1, 3, 4, 3, 1, 2, 2, 0, { } 3, 3, 2, 1, 3, 4, 2, 1, 2, 5, 6, 3, 9, 4, 2, 3, 3, 3, 3, 5, 0, { } 2, 1, 1, 1, 2, 1, 1, 1, 3, 4, 4, 1, 4,10, 0, 2, 2, 5, 7, 3, 0, { } 3, 2, 2, 3, 1, 3, 3, 2, 2, 1, 1, 3, 2, 0,11, 3, 3, 0, 1, 2, 0, { } 5, 3, 5, 4, 3, 4, 4, 4, 3, 2, 2, 4, 3, 2, 3, 8, 5, 1, 2, 2, 0, { } 4, 3, 4, 3, 3, 3, 3, 2, 2, 3, 3, 3, 3, 2, 3, 5, 9, 2, 2, 4, 0, { } 1, 1, 0, 0, 2, 2, 1, 2, 2, 1, 2, 1, 3, 5, 0, 1, 2,15, 6, 1, 0, { } 2, 2, 2, 1, 2, 3, 2, 1, 6, 3, 3, 2, 3, 7, 1, 2, 2, 6,11, 3, 0, { } 4, 1, 1, 1, 3, 2, 2, 1, 1, 7, 5, 2, 5, 3, 2, 2, 4, 1, 3, 8, 0, { } 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 { }; } motmisc.c: In function ‘pr_num_to_aa’: motmisc.c:181:5: warning: case label value is less than minimum value for type case -1: printf("."); break; ^~~~ motmisc.c: In function ‘dir_unix’: motmisc.c:574:10: warning: function returns address of local variable [-Wreturn-local-addr] return(pros); ^ motmisc.c: In function ‘extract_seqs’: motmisc.c:838:39: warning: format not a string literal and no format arguments [-Wformat-security] if (out) fprintf(fout, &line[dbs[db]->seq_offset]); ^~~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c:708:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c:857:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] else fgets(line, MAXLINE, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c:859:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] else fgets(line, MAXLINE, fin); ^~~~~~~~~~~~~~~~~~~~~~~~~ blksort.c: In function ‘main’: blksort.c:214:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(ctemp); ^~~~ fgets blksort.c:184:9: warning: variable ‘db’ set but not used [-Wunused-but-set-variable] char db[FNAMELEN]; ^~ blksort.c: In function ‘print_results’: blksort.c:804:2: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (j=save_nresult; j save_nresult && good_score && ^~ blksort.c:782:28: warning: variable ‘ctemp’ set but not used [-Wunused-but-set-variable] char save_fam[MAXAC+1], ctemp[MAXAC+1]; ^~~~~ blksort.c: In function ‘add_query’: blksort.c:1193:7: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] else if (i > Ntiles-1) i = Ntiles-1; ^~~~ blksort.c:1194:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ { ^ gcc -Wall -O2 -c getblock.c blksort.c: In function ‘align_blocks’: blksort.c:1877:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] sprintf(ctemp, "%d", block->offset[s]); ~^ ~~~~~~~~~~~~~~~~ %ld blksort.c:1880:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] sprintf(ctemp, "%d", block->offset[block->nseq-1]+1); ~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ %ld blksort.c:1936:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] sprintf(ctemp, "%d", results[t].offset+1); ~^ ~~~~~~~~~~~~~~~~~~~ %ld blksort.c:1823:15: warning: variable ‘itemp’ set but not used [-Wunused-but-set-variable] int first, itemp; ^~~~~ blksort.c: In function ‘strandcmp’: blksort.c:2052:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1; ^~ blksort.c:2052:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1; ^~ blksort.c: In function ‘mincmp’: blksort.c:2072:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1; ^~ blksort.c:2072:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (t1->frame < 0) strand1=-1; if (t2->frame < 0) strand2=-1; ^~ motmisc.c: In function ‘getscore’: motmisc.c:244:7: warning: ‘fin’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (fin != NULL) ^ getblock.c: In function ‘main’: getblock.c:97:3: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(BlockFam); ^~~~ fgets getblock.c: In function ‘get_map’: getblock.c:461:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fmap); ^~~~~~~~~~~~~~~~~~~~~~~~~~ getblock.c: In function ‘get_fasta’: getblock.c:485:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fdat); ^~~~~~~~~~~~~~~~~~~~~~~~~~ getblock.c: In function ‘get_pdb’: getblock.c:512:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpdb); ^~~~~~~~~~~~~~~~~~~~~~~~~~ motmisc.c: In function ‘get_ids’: motmisc.c:623:56: warning: array subscript is above array bounds [-Warray-bounds] strncpy(new->full_entry, line, len); new->full_entry[len] = '\0'; ~~~~~~~~~~~~~~~^~~~~ gcc -Wall -O2 -c getseq.c getseq.c: In function ‘main’: getseq.c:70:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(seqname); ^~~~ fgets blksort.c: In function ‘check_repeats’: blksort.c:1240:56: warning: ‘width’ may be used uninitialized in this function [-Wmaybe-uninitialized] int i, ii, t, tt, lastrank, lastpath, mrep, report, width; ^~~~~ blksort.c:1286:25: warning: ‘lastpath’ may be used uninitialized in this function [-Wmaybe-uninitialized] stemp[i].path = lastpath; ~~~~~~~~~~~~~~^~~~~~~~~~ gcc -Wall -O2 -c multimat.c gcc -Wall -O2 -c motifj.c multimat.c: In function ‘main’: multimat.c:177:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(ctemp); ^~~~ fgets multimat.c: In function ‘add_query’: multimat.c:942:49: warning: variable ‘one’ set but not used [-Wunused-but-set-variable] int i, t, j, imin, nblock, mblock, lastrank, one; ^~~ multimat.c:942:39: warning: variable ‘lastrank’ set but not used [-Wunused-but-set-variable] int i, t, j, imin, nblock, mblock, lastrank, one; ^~~~~~~~ multimat.c: In function ‘closest_seq’: multimat.c:1585:4: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (s1=0; s1 < block->nseq-1; s1++) ^~~ multimat.c:1592:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ return(maxs1); ^~~~~~ multimat.c:1559:8: warning: variable ‘npair’ set but not used [-Wunused-but-set-variable] int npair, s1, s2, l1, l2, i, i1, i2; ^~~~~ motifj.c: In function ‘main’: motifj.c:194:6: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(intemp); ^~~~ fgets motifj.c:469:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] (*aa3_obs)[aa2][aa3][d1][d2] >= (unsigned char) Signif ) ^ motifj.c:469:27: warning: array subscript has type ‘char’ [-Wchar-subscripts] (*aa3_obs)[aa2][aa3][d1][d2] >= (unsigned char) Signif ) ^ motifj.c:524:17: warning: array subscript has type ‘char’ [-Wchar-subscripts] (*aa3_obs)[aa2][aa3][d1][d2] = 0; /* Reset scoring matrix to 0 */ ^ motifj.c:524:22: warning: array subscript has type ‘char’ [-Wchar-subscripts] (*aa3_obs)[aa2][aa3][d1][d2] = 0; /* Reset scoring matrix to 0 */ ^ motifj.c: In function ‘cut_motifs’: motifj.c:946:60: warning: variable ‘maxcount’ set but not used [-Wunused-but-set-variable] int seq_list[MAXSEQS], countk, widthk, widthj, mincount, maxcount; ^~~~~~~~ motifj.c:946:50: warning: variable ‘mincount’ set but not used [-Wunused-but-set-variable] int seq_list[MAXSEQS], countk, widthk, widthj, mincount, maxcount; ^~~~~~~~ motifj.c: In function ‘get_count’: motifj.c:1429:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (i = 0; i < Len[n]; i++) ^~~ motifj.c:1442:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ if (flag) count++; ^~ motifj.c: In function ‘main’: motifj.c:224:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Title, MAXLINE, bf); ^~~~~~~~~~~~~~~~~~~~~~~~~ motifj.c:263:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Title, MAXLINE, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~ motifj.c: In function ‘getseqs’: motifj.c:1310:20: warning: ‘toolong’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (toolong) i = strlen(line); ^ motifj.c:1316:22: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] Seq[ns][j++] = itemp; ~^~ multimat.c: In function ‘map_blocks’: multimat.c:1365:58: warning: array subscript is above array bounds [-Warray-bounds] strncpy(ctemp, results[min_t].seq_id, SNAMELEN); ctemp[SNAMELEN] = '\0'; ~~~~~^~~~~~~~~~ blksort.c: In function ‘print_results’: blksort.c:814:31: warning: ‘last_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] (nprint < MaxHit || max_score == last_score) ) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Wall -O2 -c motomat.c motomat.c: In function ‘main’: motomat.c:169:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(Mot_Filename); ^~~~ fgets motomat.c: In function ‘save_block’: motomat.c:1284:8: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] for (s=0; s prevsout) ^~ motomat.c: In function ‘pb_weights’: motomat.c:1458:11: warning: variable ‘factor’ set but not used [-Wunused-but-set-variable] double factor, dtemp; ^~~~~~ motomat.c: In function ‘main’: motomat.c:167:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("ls -al *.mot"); ^~~~~~~~~~~~~~~~~~~~~~ motomat.c:186:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Version, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:193:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&RunType, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:194:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Signif, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:195:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Dups, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:196:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Distance, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:197:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&NumSeqs, sizeof(int), 1, mot); /* # sequences */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:198:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&Total_Motifs, sizeof(int), 1, mot); /* # motifs */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:204:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(seqs->len, sizeof(int), NumSeqs, mot); /* sequence lengths */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:215:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(seqs->name, SNAMELEN*sizeof(char), NumSeqs, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:218:4: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(seqs->seq, sizeof(char), seqs->totlen, mot); /* sequences */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:229:27: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] if (!feof(mot)) fread(title, 100*sizeof(char), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:234:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&motif[i].domain, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:235:13: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&motif[i].freq, sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:238:16: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&motif[i].seq_no[j], sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:240:16: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(&motif[i].pos[j], sizeof(int), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:254:10: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] fread(motif, sizeof(struct motif_struct), Total_Motifs, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ motomat.c:255:27: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] if (!feof(mot)) fread(title, MAXLINE*sizeof(char), 1, mot); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Wall -O2 -c uextract.c uextract.c: In function ‘main’: uextract.c:133:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(lisfile); ^~~~ fgets uextract.c:190:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(title, MAXLINE, flis); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ uextract.c:207:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(stemp, MAXLINE, flis); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blimps.o blimps.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blimps-mem.o blimps-mem.c gcc -Wall -O2 -c blosum.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blocks.o blocks.c blosum.c: In function ‘main’: blosum.c:128:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(datfile); ^~~~ fgets blocks.c: In function ‘read_a_block_faster’: blocks.c:1225:26: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘char (*)[100]’ [-Wformat=] sscanf(Buffer, "%s (%d) %s %s", ~^ &(new_block->sequences[iseq].name), ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:1225:34: warning: format ‘%s’ expects argument of type ‘char *’, but argument 5 has type ‘char (*)[80]’ [-Wformat=] sscanf(Buffer, "%s (%d) %s %s", ~^ blocks.c:1228:12: &ctemp, ~~~~~~ blocks.c:1225:37: warning: format ‘%s’ expects argument of type ‘char *’, but argument 6 has type ‘char (*)[20]’ [-Wformat=] sscanf(Buffer, "%s (%d) %s %s", ~^ blocks.c:1229:12: &ctemp2 ); ~~~~~~~ blocks.c: In function ‘read_block_header’: blocks.c:167:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:175:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:210:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:212:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:264:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:266:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:296:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, bfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:298:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] { fgets(Buffer, LARGE_BUFF_LENGTH, bfp); } ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c: In function ‘next_cluster’: blocks.c:490:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(BlockBuffer, BlockBufLength, bfp); /* read a line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks.c:628:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(BlockBuffer, BlockBufLength, bfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -Wall -O2 -c blastdat.c blastdat.c: In function ‘main’: blastdat.c:61:7: warning: implicit declaration of function ‘gets’; did you mean ‘fgets’? [-Wimplicit-function-declaration] gets(homfile); ^~~~ fgets blastdat.c: In function ‘read_hom’: blastdat.c:373:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (upper < 0) upper= 0; if (upper > tps-1) upper=tps-1; ^~ blastdat.c:373:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (upper < 0) upper= 0; if (upper > tps-1) upper=tps-1; ^~ blastdat.c:188:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fhom); /* next line is blank */ ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o config.o config.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o convert.o convert.c convert.c: In function ‘gribskov_conversion_method’: convert.c:926:14: warning: ‘fp’ is used uninitialized in this function [-Wuninitialized] sij_matrix = load_qij(fp); ~~~~~~~~~~~^~~~~~~~~~~~~~ convert.c: In function ‘make_gribs’: convert.c:708:57: warning: iteration 20 invokes undefined behavior [-Waggressive-loop-optimizations] temp[aa] += col->cnt[aa1] * subst->value[aa][aa1]; ~~~~~~~~~~~~~~~~^~~~~ convert.c:706:10: note: within this loop for (aa1=1; aa1 <= 22 ; aa1++) ^~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errors.o errors.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o files.o files.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o frequency.o frequency.c convert.c:708:57: warning: iteration 21 invokes undefined behavior [-Waggressive-loop-optimizations] temp[aa] += col->cnt[aa1] * subst->value[aa][aa1]; ~~~~~~~~~~~~~~~~^~~~~ convert.c:703:7: note: within this loop for (aa=0; aa <= 22; aa++) ^~~ motomat.c:644:54: warning: ‘paths’ may be used uninitialized in this function [-Wmaybe-uninitialized] ClThres, DropScore, totb, paths->nblocks, paths->next_path->nbest, ~~~~~^~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gcode.o gcode.c gcc blksort.o motmisc.o -lm -o blksort blksort.o: In function `main': blksort.c:(.text.startup+0x2d6): warning: the `gets' function is dangerous and should not be used. /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lists.o lists.c gcc getblock.o motmisc.o -lm -o getblock /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix.o matrix.c getblock.o: In function `main': getblock.c:(.text.startup+0x602): warning: the `gets' function is dangerous and should not be used. /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o memory.o memory.c matrix.c: In function ‘read_matrix_header’: matrix.c:102:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c:109:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c:123:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c:143:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c:158:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); /* read the next line */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix.c: In function ‘read_matrix_body’: matrix.c:291:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, mfp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc getseq.o motmisc.o -lm -o getseq /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o options.o options.c getseq.o: In function `main': getseq.c:(.text.startup+0xc0): warning: the `gets' function is dangerous and should not be used. gcc multimat.o motmisc.o -lm -o multimat multimat.o: In function `main': multimat.c:(.text.startup+0x2ea): warning: the `gets' function is dangerous and should not be used. gcc motifj.o motmisc.o -lm -o motifj motifj.o: In function `shuffle': motifj.c:(.text+0x133a): warning: the `gets' function is dangerous and should not be used. gcc motomat.o motmisc.o -lm -o motomat /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o p2clib.o p2clib.c motomat.o: In function `main': motomat.c:(.text.startup+0x20e): warning: the `gets' function is dangerous and should not be used. gcc uextract.o motmisc.o -lm -o uextract uextract.o: In function `main': uextract.c:(.text.startup+0x21e): warning: the `gets' function is dangerous and should not be used. gcc blosum.o motmisc.o -lm -o blosum blosum.o: In function `main': blosum.c:(.text.startup+0x59a): warning: the `gets' function is dangerous and should not be used. gcc blastdat.o motmisc.o -lm -o blastdat blastdat.o: In function `main': blastdat.c:(.text.startup+0xe4): warning: the `gets' function is dangerous and should not be used. make[2]: Leaving directory '/<>/protomat' /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pattern.o pattern.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o protomat.o protomat.c pattern.c: In function ‘scan_patterns’: pattern.c:138:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Buffer, LARGE_BUFF_LENGTH, pat_file); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ protomat.c: In function ‘pr_num_to_aa’: protomat.c:168:5: warning: case label value is less than minimum value for type case -1: printf("."); break; ^~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scores.o scores.c protomat.c: In function ‘getscore’: protomat.c:231:7: warning: ‘fin’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (fin != NULL) ^ pattern.c: In function ‘pattern_matches’: pattern.c:232:2: warning: ‘ok’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (x=0; !ok && xkey, key) == 0) /* item is a duplicate */ ~^~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o util.o util.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o version.o version.c sl.c: In function ‘SearchSL’: sl.c:421:11: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized] return q->key; ~^~~~~ version.c: In function ‘print_version’: version.c:183:15: warning: format not a string literal and no format arguments [-Wformat-security] fprintf(fp, TitleString); ^~~~~~~~~~~ version.c:184:15: warning: format not a string literal and no format arguments [-Wformat-security] fprintf(fp, CopyrightString); ^~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blweight.o blweight.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blalign.o blalign.c blweight.c: In function ‘main’: blweight.c:123:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( bdbname, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blweight.c:136:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( conname, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blweight.c:153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blweight.c:191:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( ctemp, BLWEIGHT_CTEMPLEN, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bldist.o bldist.c blalign.c: In function ‘main’: blalign.c:122:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blk2pssm.o blk2pssm.c bldist.c: In function ‘main’: bldist.c:73:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bldist.c:97:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(sijname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bldist.c:130:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bldist.c:143:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2pssm.c: In function ‘main’: blk2pssm.c:91:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2pssm.c:104:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(conname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2pssm.c:119:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, BLK2PSSM_CTEMPLEN, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blweight.c: In function ‘adjustweights’: blweight.c:531:16: warning: ‘numinset’ may be used uninitialized in this function [-Wmaybe-uninitialized] numinset = numinset + 1; ~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o rank_matrix.o rank_matrix.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o retblock.o retblock.c rank_matrix.c: In function ‘main’: rank_matrix.c:42:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(matname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ retblock.c: In function ‘main’: retblock.c:53:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ retblock.c:69:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(acname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rank_matrix.c: In function ‘construct_rank_matrix’: rank_matrix.c:119:17: warning: ‘rank_Qij’ may be used uninitialized in this function [-Wmaybe-uninitialized] copy_values_to_ranklist (aalist, original_aa, rank_Qij); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o codehop.o codehop.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htmlize-codehop.o htmlize-codehop.c htmlize-codehop.c: In function ‘main’: htmlize-codehop.c:90:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fin); nline++; ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oligo_melt.o oligo_melt.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mablock.o mablock.c htmlize-codehop.c:57:40: warning: ‘bcur’ may be used uninitialized in this function [-Wmaybe-uninitialized] struct blist *blist, *bfor, *brev, *bcur; ^~~~ htmlize-codehop.c:104:29: warning: ‘bfor’ may be used uninitialized in this function [-Wmaybe-uninitialized] strcpy(brev->line, bfor->line); ^~~~ oligo_melt.c: In function ‘main’: oligo_melt.c:78:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(fname, 80, stdin); ^~~~~~~~~~~~~~~~~~~~~~~ mablock.c: In function ‘main’: mablock.c:131:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( bdbname, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mablock.c:161:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( OutName, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mablock.c:181:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets( outtype, MABLOCK_OUTTYPELEN, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mablock.c: In function ‘try_clustal’: mablock.c:413:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLEN, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~ mablock.c:504:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ mablock.c: In function ‘try_msf’: mablock.c:639:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cobbler.o cobbler.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addseqs.o addseqs.c cobbler.c: In function ‘main’: cobbler.c:259:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(cfname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ addseqs.c: In function ‘main’: addseqs.c:153:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(infile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ addseqs.c:167:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(seqsfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ addseqs.c:180:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ addseqs.c: In function ‘best_pos’: addseqs.c:560:33: warning: ‘best_position’ may be used uninitialized in this function [-Wmaybe-uninitialized] blist->endpos = best_position + blist->block->width - 1; ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ codehop.c: In function ‘find_oligos’: codehop.c:936:18: warning: ‘oligo_clump’ may be used uninitialized in this function [-Wmaybe-uninitialized] if (!Verbose) free(oligo_clump); ^~~~~~~~~~~~~~~~~ codehop.c: In function ‘compute_max’: codehop.c:1108:31: warning: ‘ic’ may be used uninitialized in this function [-Wmaybe-uninitialized] ctemp[ic++]= nt_btoa[res]; ~~~~~~~~~~~^~~~~~~~~~~~~~~ addseqs.c: In function ‘fix_ac’: addseqs.c:897:30: warning: ‘; distance from previous block=(’ directive writing 32 bytes into a region of size between 1 and 100 [-Wformat-overflow=] sprintf(blist->block->ac, "%s; distance from previous block=(%d,%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from ../include/blocksprogs.h:3, from addseqs.c:55: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 37 and 156 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o fastaseqs.o fastaseqs.c fastaseqs.c: In function ‘main’: fastaseqs.c:42:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(infile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastaseqs.c:55:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o LAMA.o LAMA.c LAMA.c: In function ‘read_a_prodom_entry’: LAMA.c:1863:45: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("Sequence %s has length of %d instead of expected %d\n", ~^ %ld block->sequences[num_seqs].name, strlen(ptr), ~~~~~~~~~~~ LAMA.c: In function ‘getargs’: LAMA.c:403:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname[0], MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA.c:408:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname[1], MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA.c:429:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o find_biassed_blocks.o find_biassed_blocks.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makeblockmap.o makeblockmap.c find_biassed_blocks.c: In function ‘read_a_prodom_entry’: find_biassed_blocks.c:843:45: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t {aka long unsigned int}’ [-Wformat=] printf("Sequence %s has length of %d instead of expected %d\n", ~^ %ld block->sequences[num_seqs].name, strlen(ptr), ~~~~~~~~~~~ find_biassed_blocks.c: In function ‘getargs’: find_biassed_blocks.c:293:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prints2blocks.o prints2blocks.c prints2blocks.c: In function ‘main’: prints2blocks.c:66:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(inpfname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lisblk.o lisblk.c lisblk.c: In function ‘main’: lisblk.c:56:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(lisfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c:72:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(blkfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c:88:6: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(blkfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c:101:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Title, MAXLINE, flis); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ lisblk.c:106:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(Pros, MAXLINE, flis); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o coduse.o coduse.c In file included from /usr/include/stdio.h:862:0, from ../include/blocksprogs.h:3, from lisblk.c:21: In function ‘fgets’, inlined from ‘main’ at lisblk.c:106:4: /usr/include/s390x-linux-gnu/bits/stdio2.h:260:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ coduse.c: In function ‘main’: coduse.c:68:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(infile, MAXNAME, stdin ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ coduse.c:81:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(organism, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ coduse.c:98:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(outfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o narrow.o narrow.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blk2slx.o blk2slx.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blkprob.o blkprob.c narrow.c: In function ‘main’: narrow.c:96:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, 80, stdin); ^~~~~~~~~~~~~~~~~~~~~~~ narrow.c:107:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(chkname, 80, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~ narrow.c:210:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, chk); ^~~~~~~~~~~~~~~~~~~~~~~~~ blk2slx.c: In function ‘main’: blk2slx.c:38:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2slx.c:51:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(conname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c: In function ‘align_blocks’: blkprob.c:2108:33: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] sprintf(ctemp, "%d", Results[t].offset+1); ~^ ~~~~~~~~~~~~~~~~~~~ %ld blkprob.c: In function ‘main’: blkprob.c:328:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c:356:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(homfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blkprob.c:365:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(datfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o interpro.o interpro.c interpro.c: In function ‘main’: interpro.c:97:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(iprfile, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ interpro.c:111:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(iprname, MAXAC, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pssmdist.o pssmdist.c pssmdist.c: In function ‘main’: pssmdist.c:116:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(mname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:129:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(oname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:141:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(fname, MAXNAME,stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:158:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c:169:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ctemp, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pssmBL.o pssmBL.c pssmBL.c: In function ‘main’: pssmBL.c:32:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(pssmname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmBL.c:45:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmBL.c:58:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(conname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pssmdist.c: In function ‘compute’: pssmdist.c:245:26: warning: ‘minfirst’ may be used uninitialized in this function [-Wmaybe-uninitialized] int x, xreport, score, minfirst, minlast, pflag, itemp; ^~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o papssm.o papssm.c pssmdist.c:245:36: warning: ‘minlast’ may be used uninitialized in this function [-Wmaybe-uninitialized] int x, xreport, score, minfirst, minlast, pflag, itemp; ^~~~~~~ papssm.c: In function ‘main’: papssm.c:253:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(cfname, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o matrix_logob.o matrix_logob.c matrix_logob.c: In function ‘write_symvec’: matrix_logob.c:457:24: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int’ [-Wformat=] fprintf(out, "%*ld %*.0lf %*.*f % .1E\n", ~~~^ %*d nfield, pos+1, infofield, ntrue, infofield, infodecim, ~~~~~ matrix_logob.c: In function ‘main’: matrix_logob.c:171:10: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line) ; ^~~~~~~~~~~~ matrix_logob.c:177:35: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] if (stat("wave", &status) < 0) system("touch wave") ; ^~~~~~~~~~~~~~~~~~~~ matrix_logob.c:178:36: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] if (stat("marks", &status) < 0) system("touch marks") ; ^~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:209:14: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line); ^~~~~~~~~~~~ matrix_logob.c:271:10: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line) ; ^~~~~~~~~~~~ matrix_logob.c: In function ‘getargs’: matrix_logob.c:334:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(bdbname, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:350:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(blockAC, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c:359:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(suffix, MAXNAME, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ matrix_logob.c: In function ‘view_logo’: matrix_logob.c:591:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(ans, 2, stdin) ; ^~~~~~~~~~~~~~~~~~~~ matrix_logob.c:597:13: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line) ; ^~~~~~~~~~~~ matrix_logob.c:601:13: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(line) ; ^~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makelogob.o makelogob.c makelogob.c:2772:1: warning: return type defaults to ‘int’ [-Wimplicit-int] main(argc, argv) ^~~~ makelogob.c: In function ‘themain’: makelogob.c:2482:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(symvec->f, "%ld%*[^\n]", &symbols); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:2535:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(symvec->f, "%ld%ld%lg%lg%*[^\n]", &V.position_, &nl, &rsl, &rsvar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:2544:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(symvec->f, "%c%ld%*[^\n]", &map[b].b, &map[b].n); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘readparameters’: makelogob.c:1780:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%ld%*[^\n]", lowest, highest); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1788:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%*[^\n]", bar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1796:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%lg%*[^\n]", xcorner, ycorner); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1804:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", rotation); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1821:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", charwidth); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1833:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%lg%*[^\n]", barheight, barwidth); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1849:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", barbits); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1873:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", Ibeamfraction); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1885:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1897:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1909:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1921:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1929:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%*[^\n]", stacksperline); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1941:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%*[^\n]", linesperpage); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1953:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", linemove); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1969:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1977:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%*[^\n]", shrink); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1999:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%ld%*[^\n]", &numberstrings); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:2017:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(theplace->f, "%lg%lg%lg%*[^\n]", &stringspot->x, &stringspot->y, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &stringspot->s); ~~~~~~~~~~~~~~~ makelogob.c: In function ‘getstring’: makelogob.c:653:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘readwaveparameters’: makelogob.c:803:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%c%*[^\n]", &p->extreme); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:807:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->wavelocation); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:809:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->wavebit); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:811:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->waveamplitude); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:813:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->wavelength); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:824:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->dash); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:829:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(afile->f, "%lg%*[^\n]", &p->thickness); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘warnifsitesused’: makelogob.c:2058:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(symvec->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘copyaline’: makelogob.c:769:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(fin->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘p2’: makelogob.c:1174:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(LINK->colors->f, "%*[^\n]"); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c:1181:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(LINK->colors->f, "%c%lg%lg%lg%*[^\n]", &LINK->symbol, &LINK->red, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ &LINK->green, &LINK->blue); ~~~~~~~~~~~~~~~~~~~~~~~~~~ makelogob.c: In function ‘getmark’: makelogob.c:2225:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(marks->f, "%c%lg%lg%lg%*[^\n]", marksymbol, markbase, markbits, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ markscale); ~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blocks_search.o blocks_search.c blocks_search.c: In function ‘display_output’: blocks_search.c:566:12: warning: format not a string literal and no format arguments [-Wformat-security] printf(buf); ^~~ blocks_search.c: In function ‘display_html’: blocks_search.c:585:12: warning: format not a string literal and no format arguments [-Wformat-security] printf(buf); ^~~ blocks_search.c: In function ‘read_startup_info’: blocks_search.c:179:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, curr_year_month); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c:182:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, logdate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blocks_search.c: In function ‘write_csh’: blocks_search.c:426:4: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ blocks_search.c: In function ‘main’: blocks_search.c:610:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("umask 006"); ^~~~~~~~~~~~~~~~~~~ blocks_search.c:635:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ blocks_search.c:645:6: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ papssm.c:351:9: warning: ‘obs_freqs’ may be used uninitialized in this function [-Wmaybe-uninitialized] output_matrix(obs_freqs, Fou); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ papssm.c:345:23: warning: ‘matrix’ may be used uninitialized in this function [-Wmaybe-uninitialized] else output_matrix_s(matrix, Fex, 1); /* FLOAT_OUTPUT == 1 */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ papssm.c:328:19: warning: ‘diric’ may be used uninitialized in this function [-Wmaybe-uninitialized] matrix = make_diri(block, freqs, diric, obs_freqs); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ papssm.c:334:19: warning: ‘qij’ may be used uninitialized in this function [-Wmaybe-uninitialized] matrix = make_gribq(block, qij, obs_freqs); ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o LAMA_search.o LAMA_search.c LAMA_search.c: In function ‘convert_LAMA_output’: LAMA_search.c:538:13: warning: format not a string literal and no format arguments [-Wformat-security] printf(buf) ; ^~~ LAMA_search.c: In function ‘read_startup_info’: LAMA_search.c:156:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, curr_year_month); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c:159:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, logdate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ LAMA_search.c: In function ‘clean_temp_files’: LAMA_search.c:272:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ LAMA_search.c: In function ‘queue_to_mail’: LAMA_search.c:576:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ LAMA_search.c:583:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ LAMA_search.c:590:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ LAMA_search.c: In function ‘main’: LAMA_search.c:692:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("umask 006"); ^~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o block_vis.o block_vis.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o format_block.o format_block.c format_block.c: In function ‘read_startup_info’: format_block.c:117:8: warning: null argument where non-null required (argument 1) [-Wnonnull] printf(0); ^~~~~~ format_block.c:132:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, curr_year_month); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:135:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(buf, LARGE_BUFF_LENGTH, logdate); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c: In function ‘clean_temp_files’: format_block.c:241:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ format_block.c: In function ‘main’: format_block.c:907:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("umask 006"); ^~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o biassed_blocks_finder.o biassed_blocks_finder.c biassed_blocks_finder.c: In function ‘parse’: biassed_blocks_finder.c:101:6: warning: implicit declaration of function ‘plustospace’; did you mean ‘isspace’? [-Wimplicit-function-declaration] plustospace(entries[i].val); ^~~~~~~~~~~ isspace biassed_blocks_finder.c:102:6: warning: implicit declaration of function ‘unescape_url’ [-Wimplicit-function-declaration] unescape_url(entries[i].val); ^~~~~~~~~~~~ biassed_blocks_finder.c: In function ‘display_output’: biassed_blocks_finder.c:263:13: warning: format not a string literal and no format arguments [-Wformat-security] printf(buf) ; ^~~ biassed_blocks_finder.c: In function ‘clean_temp_files’: biassed_blocks_finder.c:120:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(buf); ^~~~~~~~~~~ biassed_blocks_finder.c: In function ‘main’: biassed_blocks_finder.c:295:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system("umask 006"); ^~~~~~~~~~~~~~~~~~~ format_block.c: In function ‘make_block’: format_block.c:757:24: warning: ‘; distance from previous block = (’ directive writing 34 bytes into a region of size between 1 and 100 [-Wformat-overflow=] sprintf(block->ac, "%s; distance from previous block = (%d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 36 and 145 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:769:28: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size between 0 and 99 [-Wformat-overflow=] sprintf(block->ac, "%s,%d)", ^~ In file included from /usr/include/stdio.h:862:0, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 4 and 113 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:782:24: warning: ‘; width=’ directive writing 8 bytes into a region of size between 1 and 100 [-Wformat-overflow=] sprintf(block->bl, "%s; width=%d; seqs=%d;", ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862:0, from ../include/blocksprogs.h:3, from format_block.c:29: /usr/include/s390x-linux-gnu/bits/stdio2.h:33:10: note: ‘__builtin___sprintf_chk’ output between 19 and 138 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ format_block.c:485:57: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized] block->sequences[block->num_sequences].name[k] = '\0' ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htmlize-LAMA.o htmlize-LAMA.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o show_aligned_blocks.o show_aligned_blocks.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makelis.o makelis.c /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -Wdate-time -D_FORTIFY_SOURCE=2 -c -o blk2mot.o blk2mot.c blk2mot.c: In function ‘main’: blk2mot.c:74:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(seqfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2mot.c:95:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(blkfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2mot.c:129:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(motfile, FNAMELEN, stdin); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blk2mot.c: In function ‘getseqs’: blk2mot.c:148:22: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized] int ns, itemp, i, j; ^ ar cr libblimps.a blimps.o blimps-mem.o blocks.o config.o convert.o errors.o files.o frequency.o gcode.o lists.o matrix.o memory.o options.o p2clib.o pattern.o protomat.o scores.o scoring.o sequences.o sl.o strutil.o util.o version.o /usr/bin/gcc -Wuninitialized -O2 -I../include -fpic -shared -Wl,-soname,libblimps.so.3 -o libblimps.so.3.0.0 -lm blimps.o blimps-mem.o blocks.o config.o convert.o errors.o files.o frequency.o gcode.o lists.o matrix.o memory.o options.o p2clib.o pattern.o protomat.o scores.o scoring.o sequences.o sl.o strutil.o util.o version.o /sbin/ldconfig -n . rm -f ./libblimps.so && ln -sf libblimps.so.3.0.0 ./libblimps.so rm -f blimps rm -f blweight /usr/bin/gcc -o blimps blimps.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm /usr/bin/gcc -o blweight blweight.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f blalign /usr/bin/gcc -o blalign blalign.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f bldist /usr/bin/gcc -o bldist bldist.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f blk2pssm /usr/bin/gcc -o blk2pssm blk2pssm.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f rank_matrix /usr/bin/gcc -o rank_matrix rank_matrix.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f retblock rm -f codehop /usr/bin/gcc -o codehop codehop.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm /usr/bin/gcc -o retblock retblock.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f htmlize-codehop /usr/bin/gcc -o htmlize-codehop htmlize-codehop.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f oligo_melt /usr/bin/gcc -o oligo_melt oligo_melt.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f mablock rm -f cobbler /usr/bin/gcc -o mablock mablock.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm /usr/bin/gcc -o cobbler cobbler.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f addseqs /usr/bin/gcc -o addseqs addseqs.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f fastaseqs /usr/bin/gcc -o fastaseqs fastaseqs.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f LAMA rm -f find_biassed_blocks /usr/bin/gcc -o find_biassed_blocks find_biassed_blocks.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f makeblockmap /usr/bin/gcc -o LAMA LAMA.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm /usr/bin/gcc -o makeblockmap makeblockmap.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f prints2blocks /usr/bin/gcc -o prints2blocks prints2blocks.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f lisblk /usr/bin/gcc -o lisblk lisblk.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f coduse rm -f narrow /usr/bin/gcc -o coduse coduse.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm /usr/bin/gcc -o narrow narrow.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f blk2slx rm -f blkprob /usr/bin/gcc -o blkprob blkprob.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm /usr/bin/gcc -o blk2slx blk2slx.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f interpro rm -f pssmdist /usr/bin/gcc -o interpro interpro.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm /usr/bin/gcc -o pssmdist pssmdist.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f pssmBL /usr/bin/gcc -o pssmBL pssmBL.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f papssm /usr/bin/gcc -o papssm papssm.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f matrix_logob /usr/bin/gcc -o matrix_logob matrix_logob.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f makelogob /usr/bin/gcc -o makelogob makelogob.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f blocks_search /usr/bin/gcc -o blocks_search blocks_search.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f LAMA_search /usr/bin/gcc -o LAMA_search LAMA_search.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f block_vis /usr/bin/gcc -o block_vis block_vis.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f format_block /usr/bin/gcc -o format_block format_block.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f biassed_blocks_finder /usr/bin/gcc -o biassed_blocks_finder biassed_blocks_finder.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f htmlize-LAMA /usr/bin/gcc -o htmlize-LAMA htmlize-LAMA.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f show_aligned_blocks /usr/bin/gcc -o show_aligned_blocks show_aligned_blocks.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f makelis /usr/bin/gcc -o makelis makelis.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm rm -f blk2mot /usr/bin/gcc -o blk2mot blk2mot.o -Wuninitialized -O2 -I../include -fpic -L./ -lblimps -lm make[2]: Leaving directory '/<>/blimps' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- prefix=/usr make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr make[2]: Entering directory '/<>' mkdir -p /<>/debian/tmp/usr/bin && \ cp -a blimps/fastaseqs \ /<>/debian/tmp/usr/bin/ mkdir -p /<>/debian/tmp/usr/include/blimps && \ cp include/*.h /<>/debian/tmp/usr/include/blimps/ mkdir -p /<>/debian/tmp/usr/lib && \ cp -a blimps/*.so.* \ /<>/debian/tmp/usr/lib/ mkdir -p /<>/debian/tmp/usr/share/blimps && \ cp -a docs \ /<>/debian/tmp/usr/share/blimps/ mkdir -p /<>/debian/tmp/usr/share/man/man1 && cp fastaseqs.1.gz /<>/debian/tmp/usr/share/man/man1/ mkdir -p /<>/debian/tmp/usr/lib && \ cp -a blimps/*.a blimps/*.so \ /<>/debian/tmp/usr/lib/ mkdir -p /<>/debian/tmp/usr/share/doc/blimps && \ cp -a LICENSE README UPDATES \ /<>/debian/tmp/usr/share/doc/blimps/ make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol log used by debian/libblimps3/usr/lib/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol exp used by debian/libblimps3/usr/lib/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log10 used by debian/libblimps3/usr/lib/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol lgamma used by debian/libblimps3/usr/lib/libblimps.so.3.0.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/blimps-utils/usr/bin/fastaseqs was not linked against libm.so.6 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package blimps-examples: unknown substitution variable ${shlibs:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing blimps-examples (in debian/blimps-examples); do_strip: , oemstrip: pkgstriptranslations: processing blimps-utils (in debian/blimps-utils); do_strip: , oemstrip: pkgstriptranslations: processing libblimps3 (in debian/libblimps3); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/blimps-examples/DEBIAN/control, package blimps-examples, directory debian/blimps-examples INFO: pkgstripfiles: waiting for lock (blimps-examples) ... pkgstripfiles: processing control file: debian/blimps-utils/DEBIAN/control, package blimps-utils, directory debian/blimps-utils Searching for duplicated docs in dependency libblimps3... symlinking changelog.Debian.gz in blimps-utils to file in libblimps3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package blimps-utils ... pkgstripfiles: No PNG files. dpkg-deb: building package 'blimps-utils' in '../blimps-utils_3.9-3_s390x.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing blimps-utils-dbgsym (in debian/.debhelper/blimps-utils/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/blimps-utils/dbgsym-root/DEBIAN/control, package blimps-utils-dbgsym, directory debian/.debhelper/blimps-utils/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package blimps-utils-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'blimps-utils-dbgsym' in 'debian/.debhelper/scratch-space/build-blimps-utils/blimps-utils-dbgsym_3.9-3_s390x.deb'. Renaming blimps-utils-dbgsym_3.9-3_s390x.deb to blimps-utils-dbgsym_3.9-3_s390x.ddeb pkgstripfiles: Running PNG optimization (using 4 cpus) for package blimps-examples ... pkgstripfiles: No PNG files. dpkg-deb: building package 'blimps-examples' in '../blimps-examples_3.9-3_s390x.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libblimps3-dev (in debian/libblimps3-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libblimps3-dev/DEBIAN/control, package libblimps3-dev, directory debian/libblimps3-dev Searching for duplicated docs in dependency libblimps3... symlinking changelog.Debian.gz in libblimps3-dev to file in libblimps3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libblimps3-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libblimps3-dev' in '../libblimps3-dev_3.9-3_s390x.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libblimps3/DEBIAN/control, package libblimps3, directory debian/libblimps3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libblimps3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libblimps3' in '../libblimps3_3.9-3_s390x.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libblimps3-dbgsym (in debian/.debhelper/libblimps3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libblimps3/dbgsym-root/DEBIAN/control, package libblimps3-dbgsym, directory debian/.debhelper/libblimps3/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libblimps3-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libblimps3-dbgsym' in 'debian/.debhelper/scratch-space/build-libblimps3/libblimps3-dbgsym_3.9-3_s390x.deb'. Renaming libblimps3-dbgsym_3.9-3_s390x.deb to libblimps3-dbgsym_3.9-3_s390x.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../blimps_3.9-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build blimps-3.9 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171205-1711 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ blimps_3.9-3_s390x.changes: --------------------------- Format: 1.8 Date: Tue, 05 Dec 2017 09:32:21 +0100 Source: blimps Binary: blimps-utils blimps-examples libblimps3-dev libblimps3 Architecture: s390x Version: 3.9-3 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: blimps-examples - blocks database improved searcher (example data) blimps-utils - blocks database improved searcher libblimps3 - blocks database improved searcher library libblimps3-dev - blocks database improved searcher library (development) Changes: blimps (3.9-3) unstable; urgency=medium . * Binary Upload since non-free packages are not autobuild Checksums-Sha1: e4e7d7abc668bc0d9398ff872406afa1d11f5536 330164 blimps-examples_3.9-3_s390x.deb 3d6dbf01943fb43eb4d5cfecb3497bb43e63212a 2576 blimps-utils-dbgsym_3.9-3_s390x.ddeb 3cc0ea01050943944c49a013e0d9f5be4cec20a1 312928 blimps-utils_3.9-3_s390x.deb bb6bdd8a657d2f0e4ff31cdce87d6b1452303c6f 5764 blimps_3.9-3_s390x.buildinfo 26368f1906bb5aa0ff61d00751f3d0abcbd62201 6592 libblimps3-dbgsym_3.9-3_s390x.ddeb 18516ea8e3a28cf7ea2a4801c9cadff46ac5a935 87212 libblimps3-dev_3.9-3_s390x.deb b9b29a557a02b5baa75a9832568ffa7f18437d94 58204 libblimps3_3.9-3_s390x.deb Checksums-Sha256: 96bf379301b33d712b45623f7395950fbeebca0377300bdfcfb38dfa39f5656b 330164 blimps-examples_3.9-3_s390x.deb 7333722de4de1898192b9f77c393a52e6e306cacd63c9335b1c44cea50f0e110 2576 blimps-utils-dbgsym_3.9-3_s390x.ddeb 36ff440116642628066a10276b141aa3cef2ae5f358d6f398de03ed4935cae8d 312928 blimps-utils_3.9-3_s390x.deb d61fb5c323009c0e56835440e0c489745e9680a719a56d30719051fe0d23bee5 5764 blimps_3.9-3_s390x.buildinfo cd8da66341c96b02dcfa6949c870def2a73f6df6ac3bdc2cabd3776bfc439d55 6592 libblimps3-dbgsym_3.9-3_s390x.ddeb 3895736c99b3447e933b79c7e8d4c38b7ec8d66d97d044a6fbdda651334d9742 87212 libblimps3-dev_3.9-3_s390x.deb 9a29e38f61fad341e782099836932b7fbf06bb047f4ed9c5737d76469a5c3489 58204 libblimps3_3.9-3_s390x.deb Files: e989af8e8df2bdcb588e8d66384132a5 330164 non-free/libs optional blimps-examples_3.9-3_s390x.deb 376b246e1b6665e2004150f2019dfc10 2576 non-free/debug optional blimps-utils-dbgsym_3.9-3_s390x.ddeb b96ffbdf3cf769b6779c5cdcb8322376 312928 non-free/science optional blimps-utils_3.9-3_s390x.deb 71eced94b6eebbb57cd385e22793e2c7 5764 non-free/libs optional blimps_3.9-3_s390x.buildinfo fcf3ed514e3298857f1132585e68b7d8 6592 non-free/debug optional libblimps3-dbgsym_3.9-3_s390x.ddeb 0bd16d61a50ab120ab79ff4e0d4b7c5e 87212 non-free/libdevel optional libblimps3-dev_3.9-3_s390x.deb e44afef1f8f8220cc5e5da6448936b6c 58204 non-free/libs optional libblimps3_3.9-3_s390x.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ blimps-examples_3.9-3_s390x.deb ------------------------------- new debian package, version 2.0. size 330164 bytes: control archive=3324 bytes. 653 bytes, 17 lines control 10676 bytes, 106 lines md5sums Package: blimps-examples Source: blimps Version: 3.9-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 455 Recommends: tcsh | csh Enhances: blimps-utils, libblimps3-dev Section: non-free/libs Priority: optional Homepage: http://blocks.fhcrc.org/blocks/uploads/blimps Description: blocks database improved searcher (example data) BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package contains example data. drwxr-xr-x root/root 0 2017-12-05 08:32 ./ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/ -rw-r--r-- root/root 398 2017-12-05 08:32 ./usr/share/doc/blimps-examples/changelog.Debian.gz -rw-r--r-- root/root 6668 2017-12-05 08:32 ./usr/share/doc/blimps-examples/copyright drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/examples/ -rw-r--r-- root/root 66 2005-02-23 20:07 ./usr/share/doc/blimps-examples/examples/README drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/examples/blimps/ -rw-r--r-- root/root 1922 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/README -rwxr-xr-x root/root 2782 2003-12-04 23:02 ./usr/share/doc/blimps-examples/examples/blimps/batch-search.pl -rw-r--r-- root/root 1555 2001-08-10 18:55 ./usr/share/doc/blimps-examples/examples/blimps/blimps.blkprob.csh.gz -rw-r--r-- root/root 1522 2001-08-10 18:57 ./usr/share/doc/blimps-examples/examples/blimps/blimps.blksort.csh.gz -rw-r--r-- root/root 3473 2000-06-04 04:08 ./usr/share/doc/blimps-examples/examples/blimps/blkprob.stp -rw-r--r-- root/root 33831 2000-06-04 03:54 ./usr/share/doc/blimps-examples/examples/blimps/blksort.bias.gz -rw-r--r-- root/root 3762 1995-05-25 16:48 ./usr/share/doc/blimps-examples/examples/blimps/blksort.stn -rw-r--r-- root/root 2090 2000-06-04 04:08 ./usr/share/doc/blimps-examples/examples/blimps/blksort.stp.gz drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/examples/blimps/distribution/ -rw-r--r-- root/root 7065 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.bli.gz -rw-r--r-- root/root 1698 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.blkprob.gz -rw-r--r-- root/root 3505 2006-04-06 01:05 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.blksort.gz -rw-r--r-- root/root 2637 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.blocks -rw-r--r-- root/root 214 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.cs -rw-r--r-- root/root 56 2006-04-06 01:04 ./usr/share/doc/blimps-examples/examples/blimps/distribution/example.err -rw-r--r-- root/root 5868 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleA.blk.bli.gz -rw-r--r-- root/root 4061 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleB.blk.bli.gz -rw-r--r-- root/root 4096 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleC.blk.bli.gz -rw-r--r-- root/root 4351 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleD.blk.bli.gz -rw-r--r-- root/root 5521 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/exampleE.blk.bli.gz -rw-r--r-- root/root 45 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/multimat.dat -rw-r--r-- root/root 116 2006-04-06 01:06 ./usr/share/doc/blimps-examples/examples/blimps/distribution/multimat.example.cs -rw-r--r-- root/root 140 2006-04-06 01:06 ./usr/share/doc/blimps-examples/examples/blimps/distribution/multimat.example.err -rw-r--r-- root/root 16153 2007-05-22 16:02 ./usr/share/doc/blimps-examples/examples/blimps/distribution/multimat.out.gz -rw-r--r-- root/root 397 1995-09-28 00:06 ./usr/share/doc/blimps-examples/examples/blimps/example.pro -rw-r--r-- root/root 37772 1999-07-04 22:03 ./usr/share/doc/blimps-examples/examples/blimps/example.pros.gz -rw-r--r-- root/root 706 1996-04-10 18:04 ./usr/share/doc/blimps-examples/examples/blimps/exampleA.blk -rw-r--r-- root/root 642 1999-07-04 21:54 ./usr/share/doc/blimps-examples/examples/blimps/exampleA.cs -rw-r--r-- root/root 421 1996-04-10 18:04 ./usr/share/doc/blimps-examples/examples/blimps/exampleB.blk -rw-r--r-- root/root 421 1996-04-10 18:05 ./usr/share/doc/blimps-examples/examples/blimps/exampleC.blk -rw-r--r-- root/root 454 1996-04-10 18:05 ./usr/share/doc/blimps-examples/examples/blimps/exampleD.blk -rw-r--r-- root/root 635 1996-04-10 18:05 ./usr/share/doc/blimps-examples/examples/blimps/exampleE.blk -rw-r--r-- root/root 1250 2003-12-04 22:02 ./usr/share/doc/blimps-examples/examples/blimps/lipo.pros -rwxr-xr-x root/root 1440 2000-06-14 19:09 ./usr/share/doc/blimps-examples/examples/blimps/multimat.csh -rw-r--r-- root/root 2550 2000-05-28 16:02 ./usr/share/doc/blimps-examples/examples/blimps/repeats.dat.gz -rw-r--r-- root/root 68022 2003-12-04 21:58 ./usr/share/doc/blimps-examples/examples/blimps/sample.blocks.gz -rw-r--r-- root/root 2269 2003-12-04 22:16 ./usr/share/doc/blimps-examples/examples/blimps/sample.pros -rwxr-xr-x root/root 2428 2003-09-30 21:44 ./usr/share/doc/blimps-examples/examples/blimps/www-search.pl drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/examples/cobbler/ -rw-r--r-- root/root 589 2006-04-06 00:53 ./usr/share/doc/blimps-examples/examples/cobbler/README -rw-r--r-- root/root 1390 1993-01-27 18:28 ./usr/share/doc/blimps-examples/examples/cobbler/blosum55.iij -rw-r--r-- root/root 1752 1993-01-27 18:28 ./usr/share/doc/blimps-examples/examples/cobbler/blosum55.qij -rwxr-xr-x root/root 299 2006-04-06 00:53 ./usr/share/doc/blimps-examples/examples/cobbler/cobbler.csh -rw-r--r-- root/root 1331 1999-01-27 19:07 ./usr/share/doc/blimps-examples/examples/cobbler/default.amino.frq -rw-r--r-- root/root 1059 1993-08-30 18:39 ./usr/share/doc/blimps-examples/examples/cobbler/default.codon.frq -rw-r--r-- root/root 1390 1993-01-27 17:56 ./usr/share/doc/blimps-examples/examples/cobbler/default.iij -rw-r--r-- root/root 1752 1993-01-27 17:56 ./usr/share/doc/blimps-examples/examples/cobbler/default.qij drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/ -rw-r--r-- root/root 358 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/psi-blast.cob -rw-r--r-- root/root 16354 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/psi-blast.cob.prf.gz -rw-r--r-- root/root 416 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/psi-blast.sq.cob -rw-r--r-- root/root 16676 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/psi-blast.sq.cob.prf.gz -rw-r--r-- root/root 459 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/swat.cob -rw-r--r-- root/root 3145 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/swat.cob.prf.gz -rw-r--r-- root/root 416 2006-04-06 00:50 ./usr/share/doc/blimps-examples/examples/cobbler/distribution/swat.sq.cob -rw-r--r-- root/root 3053 2006-04-06 00:50 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root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/examples/processor/ -rw-r--r-- root/root 183 2006-04-06 01:00 ./usr/share/doc/blimps-examples/examples/processor/README -rwxr-xr-x root/root 594 2005-07-04 14:43 ./usr/share/doc/blimps-examples/examples/processor/calibrate.csh -rw-r--r-- root/root 2552 2005-07-04 14:42 ./usr/share/doc/blimps-examples/examples/processor/clustal.in drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/examples/processor/distribution/ -rw-r--r-- root/root 2972 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.blks -rw-r--r-- root/root 20308 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.blks.cum.gz -rw-r--r-- root/root 2822 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.cblks -rw-r--r-- root/root 1992 2007-05-22 15:58 ./usr/share/doc/blimps-examples/examples/processor/distribution/clustal.in.seqs 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./usr/share/doc/blimps-examples/examples/processor/stockholm.in -rwxr-xr-x root/root 161 2007-05-22 15:57 ./usr/share/doc/blimps-examples/examples/processor/test.csh drwxr-xr-x root/root 0 2006-05-10 18:51 ./usr/share/doc/blimps-examples/examples/protomat/ -rw-r--r-- root/root 566 2001-08-11 16:09 ./usr/share/doc/blimps-examples/examples/protomat/README -rwxr-xr-x root/root 1277 2003-08-28 23:14 ./usr/share/doc/blimps-examples/examples/protomat/calibrate.csh drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-examples/examples/protomat/distribution/ -rw-r--r-- root/root 731 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.mblks -rw-r--r-- root/root 257 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.mcob -rw-r--r-- root/root 204 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.mmap -rw-r--r-- root/root 1812 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.mmast.gz -rw-r--r-- root/root 780 2007-05-22 16:00 ./usr/share/doc/blimps-examples/examples/protomat/distribution/lipo.out -rw-r--r-- root/root 1251 1996-12-22 22:09 ./usr/share/doc/blimps-examples/examples/protomat/lipo.pros -rwxr-xr-x root/root 3083 2006-04-06 00:35 ./usr/share/doc/blimps-examples/examples/protomat/protomat.csh blimps-utils_3.9-3_s390x.deb ---------------------------- new debian package, version 2.0. size 312928 bytes: control archive=4532 bytes. 612 bytes, 16 lines control 12984 bytes, 161 lines md5sums Package: blimps-utils Source: blimps Version: 3.9-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 716 Depends: libblimps3, libc6 (>= 2.4) Section: non-free/science Priority: optional Homepage: http://blocks.fhcrc.org/blocks/uploads/blimps Description: blocks database improved searcher BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package contains the binaries. drwxr-xr-x root/root 0 2017-12-05 08:32 ./ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/bin/ -rwxr-xr-x root/root 18144 2017-12-05 08:32 ./usr/bin/fastaseqs drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/blimps/ drwxr-xr-x root/root 0 2006-04-06 00:22 ./usr/share/blimps/docs/ -rw-r--r-- root/root 1490 2004-09-15 00:46 ./usr/share/blimps/docs/arab.codon.use -rw-r--r-- root/root 1390 2003-10-15 23:00 ./usr/share/blimps/docs/blosum55.iij -rw-r--r-- root/root 1752 2003-10-15 23:00 ./usr/share/blimps/docs/blosum55.qij -rw-r--r-- root/root 1027 2003-10-20 23:46 ./usr/share/blimps/docs/blosum62.mat -rw-r--r-- root/root 1803 2003-10-20 21:39 ./usr/share/blimps/docs/colors -rw-r--r-- root/root 1579 2003-10-15 23:08 ./usr/share/blimps/docs/default.amino.frq -rw-r--r-- root/root 1291 2003-10-15 23:08 ./usr/share/blimps/docs/default.codon.frq -rw-r--r-- 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15:32 ./usr/share/doc/blimps-utils/UPDATES.gz lrwxrwxrwx root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-utils/changelog.Debian.gz -> ../libblimps3/changelog.Debian.gz -rw-r--r-- root/root 6668 2017-12-05 08:32 ./usr/share/doc/blimps-utils/copyright drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-utils/html/ -rw-r--r-- root/root 1412 2003-11-13 22:56 ./usr/share/doc/blimps-utils/html/addseqs.html -rw-r--r-- root/root 2595 2003-11-13 22:56 ./usr/share/doc/blimps-utils/html/biased_blocks.html -rw-r--r-- root/root 2595 2003-11-13 22:56 ./usr/share/doc/blimps-utils/html/biassed_blocks.html drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/blimps-utils/html/bin/ -rw-r--r-- root/root 667 2003-10-15 22:55 ./usr/share/doc/blimps-utils/html/bin/LAMA_alignment.sh -rw-r--r-- root/root 2391 2003-11-16 20:39 ./usr/share/doc/blimps-utils/html/bin/LAMA_logos.csh -rw-r--r-- root/root 1894 2003-11-16 20:12 ./usr/share/doc/blimps-utils/html/bin/LAMA_search.sh.gz -rw-r--r-- 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./usr/share/doc/blimps-utils/html/make_blocks.html -rw-r--r-- root/root 2427 2003-11-13 23:12 ./usr/share/doc/blimps-utils/html/narrow.html -rw-r--r-- root/root 699 2003-10-15 02:19 ./usr/share/doc/blimps-utils/html/oligo_melt.html -rw-r--r-- root/root 10530 2006-02-14 18:35 ./usr/share/doc/blimps-utils/html/papers.html -rw-r--r-- root/root 2703 2003-11-13 22:55 ./usr/share/doc/blimps-utils/html/process_blocks.html -rw-r--r-- root/root 2031 2003-11-12 22:04 ./usr/share/doc/blimps-utils/html/rpsblast.html -rw-r--r-- root/root 1146 2006-03-14 00:02 ./usr/share/doc/blimps-utils/html/thanks.html -rw-r--r-- root/root 2362 2006-03-12 19:28 ./usr/share/doc/blimps-utils/html/whats_new.html drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/man/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/man/man1/ -rw-r--r-- root/root 2013 2017-12-05 08:32 ./usr/share/man/man1/fastaseqs.1.gz libblimps3-dev_3.9-3_s390x.deb ------------------------------ new debian package, version 2.0. size 87212 bytes: control archive=1396 bytes. 720 bytes, 18 lines control 1638 bytes, 26 lines md5sums Package: libblimps3-dev Source: blimps Version: 3.9-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 419 Depends: libblimps3 (= 3.9-3) Suggests: blimps-utils Provides: libblimps-dev Section: non-free/libdevel Priority: optional Homepage: http://blocks.fhcrc.org/blocks/uploads/blimps Description: blocks database improved searcher library (development) BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package provides the library development headers and the static library. drwxr-xr-x root/root 0 2017-12-05 08:32 ./ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/include/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/include/blimps/ -rw-r--r-- root/root 3189 2017-12-05 08:32 ./usr/include/blimps/aabet.h -rw-r--r-- root/root 1400 2017-12-05 08:32 ./usr/include/blimps/alphabet.h -rw-r--r-- root/root 6306 2017-12-05 08:32 ./usr/include/blimps/blastapp.h -rw-r--r-- root/root 5088 2017-12-05 08:32 ./usr/include/blimps/blocks.h -rw-r--r-- root/root 434 2017-12-05 08:32 ./usr/include/blimps/blocksprogs.h -rw-r--r-- root/root 5188 2017-12-05 08:32 ./usr/include/blimps/convert.h -rw-r--r-- root/root 3368 2017-12-05 08:32 ./usr/include/blimps/errors.h -rw-r--r-- root/root 4836 2017-12-05 08:32 ./usr/include/blimps/files.h -rw-r--r-- root/root 1660 2017-12-05 08:32 ./usr/include/blimps/frequency.h -rw-r--r-- root/root 4320 2017-12-05 08:32 ./usr/include/blimps/gcode.h -rw-r--r-- root/root 1312 2017-12-05 08:32 ./usr/include/blimps/global.h -rw-r--r-- root/root 6701 2017-12-05 08:32 ./usr/include/blimps/license.h -rw-r--r-- root/root 4904 2017-12-05 08:32 ./usr/include/blimps/matrix.h -rw-r--r-- root/root 4867 2017-12-05 08:32 ./usr/include/blimps/memory.h -rw-r--r-- root/root 7753 2017-12-05 08:32 ./usr/include/blimps/ntbet.h -rw-r--r-- root/root 3352 2017-12-05 08:32 ./usr/include/blimps/options.h -rw-r--r-- root/root 109 2017-12-05 08:32 ./usr/include/blimps/output.h -rw-r--r-- root/root 1450 2017-12-05 08:32 ./usr/include/blimps/pattern.h -rw-r--r-- root/root 11669 2017-12-05 08:32 ./usr/include/blimps/protomat.h -rw-r--r-- root/root 672 2017-12-05 08:32 ./usr/include/blimps/residues.h -rw-r--r-- root/root 9652 2017-12-05 08:32 ./usr/include/blimps/sequences.h -rw-r--r-- root/root 5586 2017-12-05 08:32 ./usr/include/blimps/skiplist.h -rw-r--r-- root/root 2770 2017-12-05 08:32 ./usr/include/blimps/strutil.h -rw-r--r-- root/root 3857 2017-12-05 08:32 ./usr/include/blimps/version.h drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/lib/ -rw-r--r-- root/root 296294 2017-12-05 08:32 ./usr/lib/libblimps.a lrwxrwxrwx root/root 0 2017-12-05 08:32 ./usr/lib/libblimps.so -> libblimps.so.3.0.0 drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/libblimps3-dev/ lrwxrwxrwx root/root 0 2017-12-05 08:32 ./usr/share/doc/libblimps3-dev/changelog.Debian.gz -> ../libblimps3/changelog.Debian.gz -rw-r--r-- root/root 6668 2017-12-05 08:32 ./usr/share/doc/libblimps3-dev/copyright libblimps3_3.9-3_s390x.deb -------------------------- new debian package, version 2.0. size 58204 bytes: control archive=864 bytes. 633 bytes, 17 lines control 209 bytes, 3 lines md5sums 23 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libblimps3 Source: blimps Version: 3.9-3 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 171 Depends: libc6 (>= 2.11) Suggests: blimps-utils Section: non-free/libs Priority: optional Homepage: http://blocks.fhcrc.org/blocks/uploads/blimps Description: blocks database improved searcher library BLIMPS (BLocks IMProved Searcher) is a searching tool that scores a protein sequence against blocks or a block against sequences. . This package provides the shared library. drwxr-xr-x root/root 0 2017-12-05 08:32 ./ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/lib/ lrwxrwxrwx root/root 0 2017-12-05 08:32 ./usr/lib/libblimps.so.3 -> libblimps.so.3.0.0 -rw-r--r-- root/root 156416 2017-12-05 08:32 ./usr/lib/libblimps.so.3.0.0 drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-12-05 08:32 ./usr/share/doc/libblimps3/ -rw-r--r-- root/root 398 2017-12-05 08:32 ./usr/share/doc/libblimps3/changelog.Debian.gz -rw-r--r-- root/root 6668 2017-12-05 08:32 ./usr/share/doc/libblimps3/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build-Space: 27812 Build-Time: 13 Distribution: bionic-proposed Host Architecture: s390x Install-Time: 7 Job: blimps_3.9-3.dsc Machine Architecture: s390x Package: blimps Package-Time: 21 Source-Version: 3.9-3 Space: 27812 Status: successful Version: 3.9-3 -------------------------------------------------------------------------------- Finished at 20171205-1711 Build needed 00:00:21, 27812k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13819848 Scanning for processes to kill in build PACKAGEBUILD-13819848 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13819848 Stopping target for build PACKAGEBUILD-13819848 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=s390x PACKAGEBUILD-13819848 Removing build PACKAGEBUILD-13819848