bowtie2 2.3.4.3-1 source package in Ubuntu

Changelog

bowtie2 (2.3.4.3-1) unstable; urgency=medium

  [ Steffen Möller ]
  * Updated OMICtools ref in d/u/metadata

  [ Alexandre Mestiashvili ]
  * New upstream version 2.3.4.3:
    - Fixed an issue causing `bowtie2-build` and `bowtie2-inspect`
      to output incomplete help text.
    - Fixed an issue causing `bowtie2-inspect` to crash.
    - Fixed an issue preventing `bowtie2` from processing paired and/or
      unpaired FASTQ reads together with interleaved FASTQ reads.
  * Bump Policy to 4.2.1

 -- Alexandre Mestiashvili <email address hidden>  Tue, 25 Sep 2018 07:58:26 +0000

Upload details

Uploaded by:
Debian Med on 2018-09-25
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
amd64 kfreebsd-amd64 all
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Eoan release on 2019-04-18 universe science
Disco release on 2018-11-10 universe science

Builds

Disco: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
bowtie2_2.3.4.3-1.dsc 2.2 KiB b5874bf0f95286225764a4729336f8f932b88d9894a034c8ed8ad8f858c2ef57
bowtie2_2.3.4.3.orig.tar.gz 10.0 MiB be22c1467e0d4358c5689ada32d959b414839b99f5ba702f946250a9526bd306
bowtie2_2.3.4.3-1.debian.tar.xz 12.1 KiB 1054cec87d615b8bacc52004ca45f8673f5cd2f4c287fd43c7eeb5c0acc06141

Available diffs

No changes file available.

Binary packages built by this source

bowtie2: ultrafast memory-efficient short read aligner

 is an ultrafast and memory-efficient tool for aligning sequencing reads
 to long reference sequences. It is particularly good at aligning reads
 of about 50 up to 100s or 1,000s of characters, and particularly good
 at aligning to relatively long (e.g. mammalian) genomes.
 .
 Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
 small: for the human genome, its memory footprint is typically
 around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes

bowtie2-dbgsym: debug symbols for bowtie2
bowtie2-examples: Examples for bowtie2

 An ultrafast and memory-efficient tool for aligning sequencing reads
 to long reference sequences. It is particularly good at aligning reads
 of about 50 up to 100s or 1,000s of characters, and particularly good
 at aligning to relatively long (e.g. mammalian) genomes.
 .
 Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
 small: for the human genome, its memory footprint is typically
 around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
 .
 This package provides some example data to work with bowtie2.