RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: 3.2.0-1423-omap4 #30-Ubuntu SMP PREEMPT Sat Dec 8 00:05:10 UTC 2012 armv7l Buildd toolchain package versions: launchpad-buildd_114-0~53~0.IS.08.04 python-lpbuildd_114-0~53~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 18 Jul 19:49:05 ntpdate[11310]: adjust time server 10.211.37.1 offset 0.010497 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e', '/home/buildd/filecache-default/0b7f47352696a25081b6ea58cd5b2440bd729d91'] Unpacking chroot for build 6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e'] Mounting chroot for build 6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e', 'deb http://ftpmaster.internal/ubuntu saucy main universe', 'deb http://ftpmaster.internal/ubuntu saucy-security main universe', 'deb http://ftpmaster.internal/ubuntu saucy-updates main universe', 'deb http://ftpmaster.internal/ubuntu saucy-proposed main universe'] Overriding sources.list in build-6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e', 'armhf'] Updating debian chroot for build 6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e Ign http://archive-team.internal saucy InRelease Ign http://archive-team.internal saucy Release.gpg Ign http://ftpmaster.internal saucy InRelease Get:1 http://archive-team.internal saucy Release [728 B] Ign http://ftpmaster.internal saucy-security InRelease Ign http://ftpmaster.internal saucy-updates InRelease Ign http://ftpmaster.internal saucy-proposed InRelease Get:2 http://ftpmaster.internal saucy Release.gpg [933 B] Get:3 http://ftpmaster.internal saucy-security Release.gpg [933 B] Get:4 http://ftpmaster.internal saucy-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal saucy-proposed Release.gpg [933 B] Get:6 http://archive-team.internal saucy/main armhf Packages Get:7 http://ftpmaster.internal saucy Release [40.8 kB] Get:8 http://ftpmaster.internal saucy-security Release [40.8 kB] Get:9 http://ftpmaster.internal saucy-updates Release [40.8 kB] Get:10 http://ftpmaster.internal saucy-proposed Release [40.8 kB] Ign http://archive-team.internal saucy/main Translation-en Get:11 http://ftpmaster.internal saucy/main armhf Packages [1201 kB] Get:12 http://ftpmaster.internal saucy/universe armhf Packages [5434 kB] Get:13 http://ftpmaster.internal saucy/main Translation-en [703 kB] Get:14 http://ftpmaster.internal saucy/universe Translation-en [3853 kB] Get:15 http://ftpmaster.internal saucy-security/main armhf Packages [14 B] Get:16 http://ftpmaster.internal saucy-security/universe armhf Packages [14 B] Get:17 http://ftpmaster.internal saucy-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal saucy-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal saucy-updates/main armhf Packages [14 B] Get:20 http://ftpmaster.internal saucy-updates/universe armhf Packages [14 B] Get:21 http://ftpmaster.internal saucy-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal saucy-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal saucy-proposed/main armhf Packages [21.1 kB] Get:24 http://ftpmaster.internal saucy-proposed/universe armhf Packages [75.1 kB] Get:25 http://ftpmaster.internal saucy-proposed/main Translation-en [16.2 kB] Get:26 http://ftpmaster.internal saucy-proposed/universe Translation-en [66.2 kB] Fetched 11.5 MB in 31s (364 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: libjson-c2 The following packages will be upgraded: cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base libasan0 libatomic1 libdbus-1-3 libgcc-4.8-dev libgcc1 libgomp1 libjson0 libssl1.0.0 libstdc++-4.8-dev libstdc++6 linux-libc-dev upstart 16 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 21.6 MB of archives. After this operation, 39.9 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! gcc-4.8-base libstdc++6 libgomp1 libatomic1 libasan0 cpp-4.8 g++-4.8 gcc-4.8 libgcc-4.8-dev libstdc++-4.8-dev libgcc1 libssl1.0.0 libdbus-1-3 libjson-c2 libjson0 upstart linux-libc-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy-proposed/main gcc-4.8-base armhf 4.8.1-7ubuntu1 [16.3 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libstdc++6 armhf 4.8.1-7ubuntu1 [279 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libgomp1 armhf 4.8.1-7ubuntu1 [25.1 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libatomic1 armhf 4.8.1-7ubuntu1 [6782 B] Get:5 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libasan0 armhf 4.8.1-7ubuntu1 [67.4 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy-proposed/main cpp-4.8 armhf 4.8.1-7ubuntu1 [5169 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy-proposed/main g++-4.8 armhf 4.8.1-7ubuntu1 [5557 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy-proposed/main gcc-4.8 armhf 4.8.1-7ubuntu1 [5867 kB] Get:9 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libgcc-4.8-dev armhf 4.8.1-7ubuntu1 [302 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libstdc++-4.8-dev armhf 4.8.1-7ubuntu1 [1784 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libgcc1 armhf 1:4.8.1-7ubuntu1 [48.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy-proposed/main libssl1.0.0 armhf 1.0.1e-3ubuntu1 [806 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main libdbus-1-3 armhf 1.6.12-0ubuntu2 [124 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main libjson-c2 armhf 0.11-2ubuntu1 [20.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main libjson0 armhf 0.11-2ubuntu1 [1024 B] Get:16 http://ftpmaster.internal/ubuntu/ saucy-proposed/main upstart armhf 1.9.1-0ubuntu2 [567 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main linux-libc-dev armhf 3.10.0-3.12 [911 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 21.6 MB in 5s (3887 kB/s) (Reading database ... 11924 files and directories currently installed.) Preparing to replace gcc-4.8-base:armhf 4.8.1-6ubuntu1 (using .../gcc-4.8-base_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement gcc-4.8-base:armhf ... Setting up gcc-4.8-base:armhf (4.8.1-7ubuntu1) ... (Reading database ... 11924 files and directories currently installed.) Preparing to replace libstdc++6:armhf 4.8.1-6ubuntu1 (using .../libstdc++6_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement libstdc++6:armhf ... Preparing to replace libgcc1:armhf 1:4.8.1-6ubuntu1 (using .../libgcc1_1%3a4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement libgcc1:armhf ... Setting up libgcc1:armhf (1:4.8.1-7ubuntu1) ... Setting up libstdc++6:armhf (4.8.1-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 11924 files and directories currently installed.) Preparing to replace libgomp1:armhf 4.8.1-6ubuntu1 (using .../libgomp1_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement libgomp1:armhf ... Preparing to replace libatomic1:armhf 4.8.1-6ubuntu1 (using .../libatomic1_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement libatomic1:armhf ... Preparing to replace libasan0:armhf 4.8.1-6ubuntu1 (using .../libasan0_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement libasan0:armhf ... Preparing to replace cpp-4.8 4.8.1-6ubuntu1 (using .../cpp-4.8_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace g++-4.8 4.8.1-6ubuntu1 (using .../g++-4.8_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.1-6ubuntu1 (using .../gcc-4.8_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:armhf 4.8.1-6ubuntu1 (using .../libgcc-4.8-dev_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement libgcc-4.8-dev:armhf ... Preparing to replace libstdc++-4.8-dev:armhf 4.8.1-6ubuntu1 (using .../libstdc++-4.8-dev_4.8.1-7ubuntu1_armhf.deb) ... Unpacking replacement libstdc++-4.8-dev:armhf ... Preparing to replace libssl1.0.0:armhf 1.0.1e-2ubuntu1.1 (using .../libssl1.0.0_1.0.1e-3ubuntu1_armhf.deb) ... Unpacking replacement libssl1.0.0:armhf ... Preparing to replace libdbus-1-3:armhf 1.6.12-0ubuntu1 (using .../libdbus-1-3_1.6.12-0ubuntu2_armhf.deb) ... Unpacking replacement libdbus-1-3:armhf ... Selecting previously unselected package libjson-c2:armhf. Unpacking libjson-c2:armhf (from .../libjson-c2_0.11-2ubuntu1_armhf.deb) ... Preparing to replace libjson0:armhf 0.10-1.2ubuntu2 (using .../libjson0_0.11-2ubuntu1_armhf.deb) ... Unpacking replacement libjson0:armhf ... Preparing to replace upstart 1.9.1-0ubuntu1 (using .../upstart_1.9.1-0ubuntu2_armhf.deb) ... Unpacking replacement upstart ... Preparing to replace linux-libc-dev:armhf 3.10.0-2.11 (using .../linux-libc-dev_3.10.0-3.12_armhf.deb) ... Unpacking replacement linux-libc-dev:armhf ... Setting up libgomp1:armhf (4.8.1-7ubuntu1) ... Setting up libatomic1:armhf (4.8.1-7ubuntu1) ... Setting up libasan0:armhf (4.8.1-7ubuntu1) ... Setting up cpp-4.8 (4.8.1-7ubuntu1) ... Setting up libgcc-4.8-dev:armhf (4.8.1-7ubuntu1) ... Setting up gcc-4.8 (4.8.1-7ubuntu1) ... Setting up libstdc++-4.8-dev:armhf (4.8.1-7ubuntu1) ... Setting up g++-4.8 (4.8.1-7ubuntu1) ... Setting up libssl1.0.0:armhf (1.0.1e-3ubuntu1) ... Setting up libdbus-1-3:armhf (1.6.12-0ubuntu2) ... Setting up libjson-c2:armhf (0.11-2ubuntu1) ... Setting up libjson0:armhf (0.11-2ubuntu1) ... Setting up upstart (1.9.1-0ubuntu2) ... Setting up linux-libc-dev:armhf (3.10.0-3.12) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e', 'armhf', 'saucy-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=saucy-proposed', '--purpose=PRIMARY', '--architecture=armhf', '--comp=universe', 'bppsuite_0.8.0-1+build1.dsc'] Initiating build 6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e with 2 jobs across 2 processor cores. Kernel reported to sbuild: 3.2.0-1423-omap4 #30-Ubuntu SMP PREEMPT Sat Dec 8 00:05:10 UTC 2012 armv7l Automatic build of bppsuite_0.8.0-1+build1 on diphda by sbuild/armhf 1.170.5 Build started at 20130718-1951 ****************************************************************************** bppsuite_0.8.0-1+build1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), cmake (>= 2.6), dpkg (>= 1.15.4) | install-info, texinfo, libbpp-phyl-dev (>= 2.0.3) Checking for already installed source dependencies... debhelper: missing cmake: missing dpkg: already installed (1.16.10ubuntu3 >= 1.15.4 is satisfied) texinfo: missing libbpp-phyl-dev: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cmake texinfo libbpp-phyl-dev Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof apparmor-easyprof-ubuntu bsdmainutils cmake-data dh-apparmor emacsen-common file gettext gettext-base groff-base intltool-debian libarchive13 libasprintf-dev libasprintf0c2 libbpp-core-dev libbpp-core2 libbpp-phyl9 libbpp-seq-dev libbpp-seq9 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libintl-perl liblzo2-2 libmagic1 libnettle4 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libtext-unidecode-perl libunistring0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal ucf Suggested packages: wamerican wordlist whois vacation codeblocks eclipse dh-make gettext-doc groff lrzip libintl-xs-perl less www-browser libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support texlive-base texlive-latex-base texlive-generic-recommended texinfo-doc-nonfree Recommended packages: curl wget lynx-cur libglib2.0-data shared-mime-info libxml-sax-expat-perl xml-core libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof apparmor-easyprof-ubuntu bsdmainutils cmake cmake-data debhelper dh-apparmor emacsen-common file gettext gettext-base groff-base intltool-debian libarchive13 libasprintf-dev libasprintf0c2 libbpp-core-dev libbpp-core2 libbpp-phyl-dev libbpp-phyl9 libbpp-seq-dev libbpp-seq9 libcroco3 libexpat1 libffi6 libgettextpo-dev libgettextpo0 libglib2.0-0 libintl-perl liblzo2-2 libmagic1 libnettle4 libpipeline1 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libtext-unidecode-perl libunistring0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 man-db mime-support po-debconf python3 python3-minimal python3.3 python3.3-minimal texinfo ucf 0 upgraded, 52 newly installed, 0 to remove and 0 not upgraded. Need to get 29.9 MB of archives. After this operation, 100 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libffi6 libmagic1 libpython3.3-minimal mime-support libpython3.3-stdlib python3.3-minimal libasprintf0c2 libglib2.0-0 libpipeline1 libxml2 groff-base bsdmainutils man-db liblzo2-2 libnettle4 libarchive13 libcroco3 libunistring0 libgettextpo0 file libpython3-stdlib python3.3 python3-minimal python3 ucf gettext-base apparmor-easyprof-ubuntu emacsen-common cmake-data cmake libasprintf-dev libgettextpo-dev gettext intltool-debian po-debconf apparmor-easyprof dh-apparmor debhelper libbpp-core2 libbpp-core-dev libbpp-seq9 libbpp-phyl9 libbpp-seq-dev libbpp-phyl-dev libintl-perl libtext-unidecode-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-libxml-perl texinfo Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ saucy/main libexpat1 armhf 2.1.0-4 [101 kB] Get:2 http://ftpmaster.internal/ubuntu/ saucy/main libffi6 armhf 3.0.13-2ubuntu1 [16.8 kB] Get:3 http://ftpmaster.internal/ubuntu/ saucy/main libmagic1 armhf 5.11-2ubuntu4 [167 kB] Get:4 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-minimal armhf 3.3.2-3ubuntu1 [575 kB] Get:5 http://ftpmaster.internal/ubuntu/ saucy/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ saucy/main libpython3.3-stdlib armhf 3.3.2-3ubuntu1 [2638 kB] Get:7 http://ftpmaster.internal/ubuntu/ saucy/main python3.3-minimal armhf 3.3.2-3ubuntu1 [1434 kB] Get:8 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf0c2 armhf 0.18.1.1-10ubuntu3 [6544 B] Get:9 http://ftpmaster.internal/ubuntu/ saucy/main libglib2.0-0 armhf 2.37.3-1ubuntu2 [883 kB] Get:10 http://ftpmaster.internal/ubuntu/ saucy/main libpipeline1 armhf 1.2.4-1 [21.7 kB] Get:11 http://ftpmaster.internal/ubuntu/ saucy/main libxml2 armhf 2.9.1+dfsg1-2ubuntu1 [567 kB] Get:12 http://ftpmaster.internal/ubuntu/ saucy/main groff-base armhf 1.22.2-3 [648 kB] Get:13 http://ftpmaster.internal/ubuntu/ saucy/main bsdmainutils armhf 9.0.5ubuntu1 [195 kB] Get:14 http://ftpmaster.internal/ubuntu/ saucy/main man-db armhf 2.6.5-2 [684 kB] Get:15 http://ftpmaster.internal/ubuntu/ saucy/main liblzo2-2 armhf 2.06-1build1 [47.0 kB] Get:16 http://ftpmaster.internal/ubuntu/ saucy/main libnettle4 armhf 2.7.1-1 [129 kB] Get:17 http://ftpmaster.internal/ubuntu/ saucy/main libarchive13 armhf 3.1.2-5ubuntu1 [266 kB] Get:18 http://ftpmaster.internal/ubuntu/ saucy/main libcroco3 armhf 0.6.8-2 [69.2 kB] Get:19 http://ftpmaster.internal/ubuntu/ saucy/main libunistring0 armhf 0.9.3-5build1 [395 kB] Get:20 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo0 armhf 0.18.1.1-10ubuntu3 [101 kB] Get:21 http://ftpmaster.internal/ubuntu/ saucy/main file armhf 5.11-2ubuntu4 [17.9 kB] Get:22 http://ftpmaster.internal/ubuntu/ saucy/main libpython3-stdlib armhf 3.3.1-0ubuntu1 [8236 B] Get:23 http://ftpmaster.internal/ubuntu/ saucy/main python3.3 armhf 3.3.2-3ubuntu1 [122 kB] Get:24 http://ftpmaster.internal/ubuntu/ saucy/main python3-minimal armhf 3.3.1-0ubuntu1 [12.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ saucy/main python3 armhf 3.3.1-0ubuntu1 [51.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ saucy/main ucf all 3.0027+nmu1 [56.3 kB] Get:27 http://ftpmaster.internal/ubuntu/ saucy/main gettext-base armhf 0.18.1.1-10ubuntu3 [53.5 kB] Get:28 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof-ubuntu all 1.0.7 [5102 B] Get:29 http://ftpmaster.internal/ubuntu/ saucy/main emacsen-common all 2.0.5 [17.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ saucy/main cmake-data all 2.8.11.2-1 [833 kB] Get:31 http://ftpmaster.internal/ubuntu/ saucy/main cmake armhf 2.8.11.2-1 [4409 kB] Get:32 http://ftpmaster.internal/ubuntu/ saucy/main libasprintf-dev armhf 0.18.1.1-10ubuntu3 [4446 B] Get:33 http://ftpmaster.internal/ubuntu/ saucy/main libgettextpo-dev armhf 0.18.1.1-10ubuntu3 [119 kB] Get:34 http://ftpmaster.internal/ubuntu/ saucy/main gettext armhf 0.18.1.1-10ubuntu3 [931 kB] Get:35 http://ftpmaster.internal/ubuntu/ saucy/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:36 http://ftpmaster.internal/ubuntu/ saucy/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:37 http://ftpmaster.internal/ubuntu/ saucy/main apparmor-easyprof all 2.8.0-0ubuntu22 [22.1 kB] Get:38 http://ftpmaster.internal/ubuntu/ saucy/main dh-apparmor all 2.8.0-0ubuntu22 [7722 B] Get:39 http://ftpmaster.internal/ubuntu/ saucy/main debhelper all 9.20130630ubuntu1 [629 kB] Get:40 http://ftpmaster.internal/ubuntu/ saucy/universe libbpp-core2 armhf 2.1.0-1 [523 kB] Get:41 http://ftpmaster.internal/ubuntu/ saucy/universe libbpp-core-dev armhf 2.1.0-1 [1501 kB] Get:42 http://ftpmaster.internal/ubuntu/ saucy/universe libbpp-seq9 armhf 2.1.0-1 [430 kB] Get:43 http://ftpmaster.internal/ubuntu/ saucy/universe libbpp-phyl9 armhf 2.1.0-1 [1496 kB] Get:44 http://ftpmaster.internal/ubuntu/ saucy/universe libbpp-seq-dev armhf 2.1.0-1 [1319 kB] Get:45 http://ftpmaster.internal/ubuntu/ saucy/universe libbpp-phyl-dev armhf 2.1.0-1 [5659 kB] Get:46 http://ftpmaster.internal/ubuntu/ saucy/main libintl-perl all 1.23-1 [1200 kB] Get:47 http://ftpmaster.internal/ubuntu/ saucy/main libtext-unidecode-perl all 0.04-2 [115 kB] Get:48 http://ftpmaster.internal/ubuntu/ saucy/main libxml-namespacesupport-perl all 1.09-3 [15.3 kB] Get:49 http://ftpmaster.internal/ubuntu/ saucy/main libxml-sax-base-perl all 1.07-1 [21.5 kB] Get:50 http://ftpmaster.internal/ubuntu/ saucy/main libxml-sax-perl all 0.99+dfsg-2ubuntu1 [64.6 kB] Get:51 http://ftpmaster.internal/ubuntu/ saucy/main libxml-libxml-perl armhf 2.0010+dfsg-1 [366 kB] Get:52 http://ftpmaster.internal/ubuntu/ saucy/main texinfo armhf 5.1.dfsg.1-4ubuntu1 [685 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.9 MB in 8s (3463 kB/s) Selecting previously unselected package libexpat1:armhf. (Reading database ... 11926 files and directories currently installed.) Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-4_armhf.deb) ... Selecting previously unselected package libffi6:armhf. Unpacking libffi6:armhf (from .../libffi6_3.0.13-2ubuntu1_armhf.deb) ... Selecting previously unselected package libmagic1:armhf. Unpacking libmagic1:armhf (from .../libmagic1_5.11-2ubuntu4_armhf.deb) ... Selecting previously unselected package libpython3.3-minimal:armhf. Unpacking libpython3.3-minimal:armhf (from .../libpython3.3-minimal_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package mime-support. Unpacking mime-support (from .../mime-support_3.54ubuntu1_all.deb) ... Selecting previously unselected package libpython3.3-stdlib:armhf. Unpacking libpython3.3-stdlib:armhf (from .../libpython3.3-stdlib_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package python3.3-minimal. Unpacking python3.3-minimal (from .../python3.3-minimal_3.3.2-3ubuntu1_armhf.deb) ... Selecting previously unselected package libasprintf0c2:armhf. Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-10ubuntu3_armhf.deb) ... Selecting previously unselected package libglib2.0-0:armhf. Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.37.3-1ubuntu2_armhf.deb) ... Selecting previously unselected package libpipeline1:armhf. Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.4-1_armhf.deb) ... Selecting previously unselected package libxml2:armhf. Unpacking libxml2:armhf (from .../libxml2_2.9.1+dfsg1-2ubuntu1_armhf.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.22.2-3_armhf.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_9.0.5ubuntu1_armhf.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.5-2_armhf.deb) ... Selecting previously unselected package liblzo2-2:armhf. 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Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up liblzo2-2:armhf (2.06-1build1) ... Setting up libnettle4:armhf (2.7.1-1) ... Setting up libarchive13:armhf (3.1.2-5ubuntu1) ... Setting up libcroco3:armhf (0.6.8-2) ... Setting up libunistring0:armhf (0.9.3-5build1) ... Setting up libgettextpo0:armhf (0.18.1.1-10ubuntu3) ... Setting up file (5.11-2ubuntu4) ... Setting up libpython3-stdlib:armhf (3.3.1-0ubuntu1) ... Setting up python3.3 (3.3.2-3ubuntu1) ... Setting up python3-minimal (3.3.1-0ubuntu1) ... Setting up python3 (3.3.1-0ubuntu1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up ucf (3.0027+nmu1) ... Setting up gettext-base (0.18.1.1-10ubuntu3) ... Setting up apparmor-easyprof-ubuntu (1.0.7) ... Setting up emacsen-common (2.0.5) ... Setting up cmake-data (2.8.11.2-1) ... Install cmake-data for emacs Setting up cmake (2.8.11.2-1) ... Setting up libasprintf-dev:armhf (0.18.1.1-10ubuntu3) ... Setting up libgettextpo-dev:armhf (0.18.1.1-10ubuntu3) ... Setting up gettext (0.18.1.1-10ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up apparmor-easyprof (2.8.0-0ubuntu22) ... Setting up dh-apparmor (2.8.0-0ubuntu22) ... Setting up debhelper (9.20130630ubuntu1) ... Setting up libbpp-core2 (2.1.0-1) ... Setting up libbpp-core-dev (2.1.0-1) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Phyl.all -- Creating generic include file: /usr/include/Bpp/Phyl/App.all -- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all -- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all -- Creating generic include file: /usr/include/Bpp/Phyl/Io.all -- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all -- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/RateDistribution.all -- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all -- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up libbpp-seq9 (2.1.0-1) ... Setting up libbpp-phyl9 (2.1.0-1) ... Setting up libbpp-seq-dev (2.1.0-1) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Phyl.all -- Creating generic include file: /usr/include/Bpp/Phyl/App.all -- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all -- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all -- Creating generic include file: /usr/include/Bpp/Phyl/Io.all -- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all -- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/RateDistribution.all -- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all -- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up libbpp-phyl-dev (2.1.0-1) ... -- Creating generic include file: /usr/include/Bpp.all -- Creating generic include file: /usr/include/Bpp/App.all -- Creating generic include file: /usr/include/Bpp/Graph.all -- Creating generic include file: /usr/include/Bpp/Graphics.all -- Creating generic include file: /usr/include/Bpp/Graphics/Fig.all -- Creating generic include file: /usr/include/Bpp/Graphics/Font.all -- Creating generic include file: /usr/include/Bpp/Graphics/Latex.all -- Creating generic include file: /usr/include/Bpp/Graphics/Molscript.all -- Creating generic include file: /usr/include/Bpp/Graphics/R.all -- Creating generic include file: /usr/include/Bpp/Graphics/Svg.all -- Creating generic include file: /usr/include/Bpp/Io.all -- Creating generic include file: /usr/include/Bpp/Numeric.all -- Creating generic include file: /usr/include/Bpp/Numeric/Function.all -- Creating generic include file: /usr/include/Bpp/Numeric/Hmm.all -- Creating generic include file: /usr/include/Bpp/Numeric/Matrix.all -- Creating generic include file: /usr/include/Bpp/Numeric/Prob.all -- Creating generic include file: /usr/include/Bpp/Numeric/Random.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat.all -- Creating generic include file: /usr/include/Bpp/Numeric/Stat/Mva.all -- Creating generic include file: /usr/include/Bpp/Phyl.all -- Creating generic include file: /usr/include/Bpp/Phyl/App.all -- Creating generic include file: /usr/include/Bpp/Phyl/Distance.all -- Creating generic include file: /usr/include/Bpp/Phyl/Graphics.all -- Creating generic include file: /usr/include/Bpp/Phyl/Io.all -- Creating generic include file: /usr/include/Bpp/Phyl/Likelihood.all -- Creating generic include file: /usr/include/Bpp/Phyl/Mapping.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Codon.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/FrequenciesSet.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Nucleotide.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/Protein.all -- Creating generic include file: /usr/include/Bpp/Phyl/Model/RateDistribution.all -- Creating generic include file: /usr/include/Bpp/Phyl/Parsimony.all -- Creating generic include file: /usr/include/Bpp/Phyl/Simulation.all -- Creating generic include file: /usr/include/Bpp/Seq.all -- Creating generic include file: /usr/include/Bpp/Seq/Alphabet.all -- Creating generic include file: /usr/include/Bpp/Seq/AlphabetIndex.all -- Creating generic include file: /usr/include/Bpp/Seq/App.all -- Creating generic include file: /usr/include/Bpp/Seq/Container.all -- Creating generic include file: /usr/include/Bpp/Seq/GeneticCode.all -- Creating generic include file: /usr/include/Bpp/Seq/Io.all -- Creating generic include file: /usr/include/Bpp/Text.all -- Creating generic include file: /usr/include/Bpp/Utils.all Setting up libintl-perl (1.23-1) ... Setting up libtext-unidecode-perl (0.04-2) ... Setting up libxml-namespacesupport-perl (1.09-3) ... Setting up libxml-sax-base-perl (1.07-1) ... Setting up libxml-sax-perl (0.99+dfsg-2ubuntu1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0010+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up texinfo (5.1.dfsg.1-4ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-0ubuntu5 make_3.81-8.2ubuntu3 dpkg-dev_1.16.10ubuntu3 gcc-4.8_4.8.1-7ubuntu1 g++-4.8_4.8.1-7ubuntu1 binutils_2.23.52.20130620-1ubuntu1 libstdc++-4.8-dev_4.8.1-7ubuntu1 libstdc++6_4.8.1-7ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::quilt gpgv: Signature made Wed Jul 17 14:40:17 2013 UTC using DSA key ID 497A176D gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bppsuite_0.8.0-1+build1.dsc dpkg-source: info: extracting bppsuite in bppsuite-0.8.0 dpkg-source: info: unpacking bppsuite_0.8.0.orig.tar.gz dpkg-source: info: unpacking bppsuite_0.8.0-1+build1.debian.tar.gz dpkg-source: info: applying debian-changes-0.8.0-1 dpkg-buildpackage: source package bppsuite dpkg-buildpackage: source version 0.8.0-1+build1 dpkg-source --before-build bppsuite-0.8.0 dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -f build-arch-stamp build-indep-stamp #CONFIGURE-STAMP# rm -f CMakeCache.txt # Add here commands to clean up after the build process. [ ! -f Makefile ] || /usr/bin/make clean; [ ! -f Makefile ] || rm Makefile; [ ! -f bppSuite/Makefile ] || rm bppSuite/Makefile; [ ! -f doc/Makefile ] || rm doc/Makefile; [ ! -f man/Makefile ] || rm man/Makefile; rm -f man/*.gz; rm -f config.sub config.guess rm -f build-stamp rm -f CMakeCache.txt rm -f *.cmake rm -f bppSuite/*.cmake #rm -f test/*.cmake rm -f man/*.cmake rm -f doc/*.cmake rm -rf CMakeFiles rm -rf bppSuite/CMakeFiles #rm -rf test/CMakeFiles rm -rf man/CMakeFiles rm -rf doc/CMakeFiles rm -rf doc/bppsuite.info rm -rf _CPack_Packages #rm -rf Testing #rm -f DartConfiguration.tcl dh_clean debian/rules build-arch cmake -DCMAKE_INSTALL_PREFIX=/usr . -- The CXX compiler identification is GNU 4.8.1 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Found nroff here: /usr/bin/nroff Adding targets: man -- Found makeinfo here: /usr/bin/makeinfo Adding targets: info, html Adding target info to target all -- Library bpp-phyl found here: includes: /usr/include dynamic libraries: /usr/lib/libbpp-phyl.so -- Library bpp-seq found here: includes: /usr/include dynamic libraries: /usr/lib/libbpp-seq.so -- Library bpp-core found here: includes: /usr/include dynamic libraries: /usr/lib/libbpp-core.so -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/bppsuite-0.8.0 dh_testdir # Add here commands to compile the arch part of the package. #/usr/bin/make touch build-arch-stamp /usr/bin/fakeroot debian/rules binary-arch cmake -DCMAKE_INSTALL_PREFIX=/usr . -- Found nroff here: /usr/bin/nroff Adding targets: man -- Found makeinfo here: /usr/bin/makeinfo Adding targets: info, html Adding target info to target all -- Library bpp-phyl found here: includes: /usr/include dynamic libraries: /usr/lib/libbpp-phyl.so -- Library bpp-seq found here: includes: /usr/include dynamic libraries: /usr/lib/libbpp-seq.so -- Library bpp-core found here: includes: /usr/include dynamic libraries: /usr/lib/libbpp-core.so -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/bppsuite-0.8.0 dh_testdir # Add here commands to compile the arch part of the package. #/usr/bin/make touch build-arch-stamp dh_testdir dh_testroot dh_prep -s dh_installdirs -s # Add here commands to install the arch part of the package into # debian/tmp. /usr/bin/make DESTDIR=/build/buildd/bppsuite-0.8.0/debian/bppsuite man doc install make[1]: Entering directory `/build/buildd/bppsuite-0.8.0' make[2]: Entering directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' make[4]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target man make[4]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[4]: Entering directory `/build/buildd/bppsuite-0.8.0' make[4]: Leaving directory `/build/buildd/bppsuite-0.8.0' Built target man make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[2]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[2]: Entering directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target info make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 0%] Built target info make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 0%] Built target man make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppalnscore make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 8%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o Linking CXX executable bppalnscore make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 8%] Built target bppalnscore make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppancestor make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 16%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o Linking CXX executable bppancestor make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 16%] Built target bppancestor make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppconsense make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 25%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o Linking CXX executable bppconsense make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 25%] Built target bppconsense make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppdist make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 33%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o Linking CXX executable bppdist make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 33%] Built target bppdist make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppmixedlikelihoods make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 41%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o Linking CXX executable bppmixedlikelihoods make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 41%] Built target bppmixedlikelihoods make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppml make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 50%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o Linking CXX executable bppml make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 50%] Built target bppml make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bpppars make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 58%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o Linking CXX executable bpppars make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 58%] Built target bpppars make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppphysamp make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 66%] Building CXX object bppSuite/CMakeFiles/bppphysamp.dir/bppPhyloSampler.cpp.o Linking CXX executable bppphysamp make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 66%] Built target bppphysamp make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppreroot make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 75%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o Linking CXX executable bppreroot make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 75%] Built target bppreroot make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppseqgen make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 83%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o Linking CXX executable bppseqgen make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 83%] Built target bppseqgen make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bppseqman make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [ 91%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o Linking CXX executable bppseqman make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [ 91%] Built target bppseqman make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' Scanning dependencies of target bpptreedraw make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' make[3]: Entering directory `/build/buildd/bppsuite-0.8.0' [100%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o Linking CXX executable bpptreedraw make[3]: Leaving directory `/build/buildd/bppsuite-0.8.0' [100%] Built target bpptreedraw make[2]: Leaving directory `/build/buildd/bppsuite-0.8.0' Install the project... -- Install configuration: "RelWithDebInfo" -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppml -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppseqgen -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppdist -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bpppars -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppseqman -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppconsense -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppancestor -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppmixedlikelihoods -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppreroot -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppphysamp -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bpptreedraw -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/bin/bppalnscore -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/info/bppsuite.info -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppml.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppseqgen.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppancestor.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bpppars.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppdist.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppconsense.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppseqman.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppreroot.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppphysamp.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bpptreedraw.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppalnscore.1.gz -- Installing: /build/buildd/bppsuite-0.8.0/debian/bppsuite/usr/share/man/man1/bppmixedlikelihoods.1.gz make[1]: Leaving directory `/build/buildd/bppsuite-0.8.0' dh_install -s /usr/bin/make -f debian/rules DH_OPTIONS=-s binary-common make[1]: Entering directory `/build/buildd/bppsuite-0.8.0' dh_testdir dh_testroot dh_installchangelogs ChangeLog dh_installdocs dh_installexamples dh_installinfo dh_installman dh_link dh_strip dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: bppsuite dh_strip debug symbol extraction: packages to act on: bppsuite dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `bppsuite-dbgsym' in `../bppsuite-dbgsym_0.8.0-1+build1_armhf.ddeb'. dh_compress dh_fixperms dh_installdeb dh_shlibdeps dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums dh_builddeb INFO: pkgstriptranslations version 118 pkgstriptranslations: processing bppsuite (in debian/bppsuite); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bppsuite/DEBIAN/control, package bppsuite, directory debian/bppsuite .. removing usr/share/doc/bppsuite/changelog.gz pkgstripfiles: PNG optimization for package bppsuite took 0 s dpkg-deb: warning: 'debian/bppsuite/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `bppsuite' in `../bppsuite_0.8.0-1+build1_armhf.deb'. make[1]: Leaving directory `/build/buildd/bppsuite-0.8.0' dpkg-genchanges -B -mUbuntu/armhf Build Daemon >../bppsuite_0.8.0-1+build1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build bppsuite-0.8.0 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20130718-2004 Publishing debug debs. chroot-autobuild/build/buildd/bppsuite_0.8.0-1+build1_armhf.deb: new debian package, version 2.0. size 457310 bytes: control archive= 1511 bytes. 1038 bytes, 23 lines control 1672 bytes, 27 lines md5sums Package: bppsuite Version: 0.8.0-1+build1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Loic Dachary Installed-Size: 989 Depends: libbpp-core2, libbpp-phyl9 (>= 2.0.3), libbpp-seq9, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0) Section: science Priority: optional Description: Bio++ program suite Includes programs: - BppML for maximum likelihood analysis, - BppSeqGen for sequences simulation, - BppAncestor for ancestral states reconstruction, - BppDist for distance methods, - BppPars for parsimony analysis, - BppSeqMan for file conversion and sequence manipulation, - BppConsense for building consensus tree and computing bootstrap values, - BppPhySamp for phylogenetic sampling, - BppReRoot for tree rerooting. - BppTreeDraw for tree drawing. - BppAlnScore for comparing alignments and computing alignment scores. - BppMixedLikelihoods for computing site per site likelihoods of components of mixture models. chroot-autobuild/build/buildd/bppsuite_0.8.0-1+build1_armhf.deb: drwxr-xr-x root/root 0 2013-07-18 20:04 ./ drwxr-xr-x root/root 0 2013-07-18 20:03 ./usr/ drwxr-xr-x root/root 0 2013-07-18 20:03 ./usr/share/ drwxr-xr-x root/root 0 2013-07-18 20:04 ./usr/share/info/ -rw-r--r-- root/root 26891 2013-07-18 19:53 ./usr/share/info/bppsuite.info.gz drwxr-xr-x root/root 0 2013-07-18 20:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-07-18 20:04 ./usr/share/doc/bppsuite/ -rw-r--r-- root/root 2871 2013-07-17 13:38 ./usr/share/doc/bppsuite/copyright -rw-r--r-- root/root 633 2013-07-17 14:33 ./usr/share/doc/bppsuite/changelog.Debian.gz drwxr-xr-x root/root 0 2013-07-18 20:03 ./usr/share/man/ drwxr-xr-x root/root 0 2013-07-18 20:04 ./usr/share/man/man1/ -rw-r--r-- root/root 402 2013-07-18 20:03 ./usr/share/man/man1/bppalnscore.1.gz -rw-r--r-- root/root 390 2013-07-18 20:03 ./usr/share/man/man1/bppancestor.1.gz -rw-r--r-- root/root 388 2013-07-18 20:03 ./usr/share/man/man1/bppseqgen.1.gz -rw-r--r-- root/root 357 2013-07-18 20:03 ./usr/share/man/man1/bppreroot.1.gz -rw-r--r-- root/root 429 2013-07-18 20:03 ./usr/share/man/man1/bpptreedraw.1.gz -rw-r--r-- root/root 465 2013-07-18 20:03 ./usr/share/man/man1/bppseqman.1.gz -rw-r--r-- root/root 494 2013-07-18 20:03 ./usr/share/man/man1/bppmixedlikelihoods.1.gz -rw-r--r-- root/root 383 2013-07-18 20:03 ./usr/share/man/man1/bppdist.1.gz -rw-r--r-- root/root 361 2013-07-18 20:03 ./usr/share/man/man1/bpppars.1.gz -rw-r--r-- root/root 394 2013-07-18 20:03 ./usr/share/man/man1/bppphysamp.1.gz -rw-r--r-- root/root 370 2013-07-18 20:03 ./usr/share/man/man1/bppml.1.gz -rw-r--r-- root/root 361 2013-07-18 20:03 ./usr/share/man/man1/bppconsense.1.gz drwxr-xr-x root/root 0 2013-07-18 20:04 ./usr/bin/ -rwxr-xr-x root/root 75680 2013-07-18 20:04 ./usr/bin/bppphysamp -rwxr-xr-x root/root 96408 2013-07-18 20:04 ./usr/bin/bppdist -rwxr-xr-x root/root 63396 2013-07-18 20:04 ./usr/bin/bpppars -rwxr-xr-x root/root 117000 2013-07-18 20:04 ./usr/bin/bppancestor -rwxr-xr-x root/root 50988 2013-07-18 20:04 ./usr/bin/bppconsense -rwxr-xr-x root/root 75888 2013-07-18 20:04 ./usr/bin/bppmixedlikelihoods -rwxr-xr-x root/root 51064 2013-07-18 20:04 ./usr/bin/bppalnscore -rwxr-xr-x root/root 42872 2013-07-18 20:04 ./usr/bin/bppseqman -rwxr-xr-x root/root 46868 2013-07-18 20:04 ./usr/bin/bpptreedraw -rwxr-xr-x root/root 67452 2013-07-18 20:04 ./usr/bin/bppreroot -rwxr-xr-x root/root 137592 2013-07-18 20:04 ./usr/bin/bppml -rwxr-xr-x root/root 108804 2013-07-18 20:04 ./usr/bin/bppseqgen bppsuite_0.8.0-1+build1_armhf.changes: Format: 1.8 Date: Fri, 08 Mar 2013 11:41:00 +0100 Source: bppsuite Binary: bppsuite Architecture: armhf Version: 0.8.0-1+build1 Distribution: saucy-proposed Urgency: low Maintainer: Ubuntu/armhf Build Daemon Changed-By: Julien Dutheil Description: bppsuite - Bio++ program suite Changes: bppsuite (0.8.0-1+build1) unstable; urgency=low . * New models for proteins (COaLA) * New program bppMixedLikelihoods Checksums-Sha1: c162ec8575029577c7c8aed0275fad8799b063a4 457310 bppsuite_0.8.0-1+build1_armhf.deb Checksums-Sha256: 20206293e2e5b79e10fecc1bcbf9cb2a22a0996dc868fe251de059d973c72bb4 457310 bppsuite_0.8.0-1+build1_armhf.deb Files: 426c1af6dab8ce5c33fc49e691f31263 457310 science optional bppsuite_0.8.0-1+build1_armhf.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20130718-2004 Build needed 00:12:06, 42992k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e'] Scanning for processes to kill in build /home/buildd/build-6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e'] Unmounting chroot for build 6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e'] Removing build 6b4779137d9f1bc3129ce1cf8f3570c1422eaa1e