https://launchpad.net/ubuntu/+source/bppsuite/2.4.1-2/+build/19451758 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-043 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 aarch64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 Jun 19:28:22 ntpdate[1928]: adjust time server 10.211.37.1 offset 0.015899 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19451758 --image-type chroot /home/buildd/filecache-default/a77e1afdcf3761e08e999e63510e3d2f5c5a8a8d Creating target for build PACKAGEBUILD-19451758 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19451758 Starting target for build PACKAGEBUILD-19451758 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19451758 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19451758 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19451758 Updating target for build PACKAGEBUILD-19451758 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf Packages [936 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [508 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe armhf Packages [8406 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5174 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf Packages [101 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [53.8 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe armhf Packages [678 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [379 kB] Fetched 16.8 MB in 6s (2752 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils bzip2 ca-certificates cpp-9 dash debconf debianutils dpkg dpkg-dev e2fsprogs fdisk g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv gzip libacl1 libapparmor1 libapt-pkg6.0 libasan5 libatomic1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-9-dev libgcc-s1 libgmp10 libgnutls30 libgomp1 libgpg-error0 libidn2-0 libjson-c4 libkmod2 libmount1 libncurses6 libncursesw6 libperl5.30 libprocps8 libseccomp2 libsmartcols1 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login logsave make mount ncurses-base ncurses-bin passwd perl perl-base perl-modules-5.30 pkgbinarymangler procps systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata util-linux 97 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 55.8 MB of archives. After this operation, 559 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcrypt-dev armhf 1:4.4.16-1ubuntu1 [120 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcrypt1 armhf 1:4.4.16-1ubuntu1 [93.4 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libc6-dev armhf 2.31-0ubuntu10 [1914 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libc-dev-bin armhf 2.31-0ubuntu10 [63.6 kB] Get:5 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf linux-libc-dev armhf 5.4.0-37.41 [1085 kB] Get:6 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libatomic1 armhf 10.1.0-4ubuntu1 [7208 B] Get:7 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libubsan1 armhf 10.1.0-4ubuntu1 [121 kB] Get:8 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgomp1 armhf 10.1.0-4ubuntu1 [86.8 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gcc-10-base armhf 10.1.0-4ubuntu1 [20.1 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgcc-s1 armhf 10.1.0-4ubuntu1 [36.1 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libcc1-0 armhf 10.1.0-4ubuntu1 [34.6 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libstdc++6 armhf 10.1.0-4ubuntu1 [440 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libc6 armhf 2.31-0ubuntu10 [2133 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf base-files armhf 11ubuntu7 [59.7 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf bsdutils armhf 1:2.35.1-5ubuntu2 [78.9 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf debianutils armhf 4.11 [84.3 kB] Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf dpkg armhf 1.19.7ubuntu4 [1083 kB] Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-modules-5.30 all 5.30.3-4 [2740 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libperl5.30 armhf 5.30.3-4 [3281 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl armhf 5.30.3-4 [223 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf perl-base armhf 5.30.3-4 [1410 kB] Get:22 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf bzip2 armhf 1.0.8-3 [31.8 kB] Get:23 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libbz2-1.0 armhf 1.0.8-3 [31.0 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf debconf all 1.5.74 [121 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main armhf dash armhf 0.5.10.2-7 [79.2 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf gzip armhf 1.10-2ubuntu1 [90.8 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main armhf login armhf 1:4.8.1-1ubuntu6 [217 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-bin armhf 6.2-1 [164 kB] Get:29 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libblkid1 armhf 2.35.1-5ubuntu2 [120 kB] Get:30 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libuuid1 armhf 2.35.1-5ubuntu2 [21.5 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libfdisk1 armhf 2.35.1-5ubuntu2 [159 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libmount1 armhf 2.35.1-5ubuntu2 [132 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main armhf libncurses6 armhf 6.2-1 [79.7 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main armhf libncursesw6 armhf 6.2-1 [106 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main armhf libtinfo6 armhf 6.2-1 [73.6 kB] Get:36 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsmartcols1 armhf 2.35.1-5ubuntu2 [84.3 kB] Get:37 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf fdisk armhf 2.35.1-5ubuntu2 [113 kB] Get:38 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf util-linux armhf 2.35.1-5ubuntu2 [985 kB] Get:39 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libc-bin armhf 2.31-0ubuntu10 [492 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main armhf ncurses-base all 6.2-1 [18.7 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main armhf sysvinit-utils armhf 2.96-3ubuntu1 [19.1 kB] Get:42 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd-sysv armhf 245.6-1ubuntu1 [10.3 kB] Get:43 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd-timesyncd armhf 245.6-1ubuntu1 [27.9 kB] Get:44 http://ftpmaster.internal/ubuntu groovy/main armhf libacl1 armhf 2.2.53-8 [16.0 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main armhf libapparmor1 armhf 2.13.3-7ubuntu6 [29.2 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main armhf libcap2 armhf 1:2.34-2 [15.6 kB] Get:47 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libudev1 armhf 245.6-1ubuntu1 [67.3 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main armhf libdevmapper1.02.1 armhf 2:1.02.167-1ubuntu3 [118 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main armhf libjson-c4 armhf 0.13.1+dfsg-7ubuntu1 [25.8 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main armhf libcryptsetup12 armhf 2:2.3.1-1ubuntu1 [172 kB] Get:51 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgmp10 armhf 2:6.2.0+dfsg-5 [193 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main armhf libunistring2 armhf 0.9.10-4 [359 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main armhf libidn2-0 armhf 2.3.0-1 [49.9 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main armhf libgnutls30 armhf 3.6.13-4ubuntu2 [769 kB] Get:55 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgpg-error0 armhf 1.38-1 [54.2 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main armhf libkmod2 armhf 27+20200310-2ubuntu1 [38.2 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main armhf libseccomp2 armhf 2.4.3-1ubuntu3 [32.5 kB] Get:58 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf mount armhf 2.35.1-5ubuntu2 [112 kB] Get:59 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf systemd armhf 245.6-1ubuntu1 [3649 kB] Get:60 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsystemd0 armhf 245.6-1ubuntu1 [247 kB] Get:61 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libzstd1 armhf 1.4.5+dfsg-2 [276 kB] Get:62 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libapt-pkg6.0 armhf 2.1.6 [757 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main armhf gpgv armhf 2.2.20-1ubuntu1 [170 kB] Get:64 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf apt armhf 2.1.6 [1244 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main armhf logsave armhf 1.45.6-1ubuntu1 [9676 B] Get:66 http://ftpmaster.internal/ubuntu groovy/main armhf libext2fs2 armhf 1.45.6-1ubuntu1 [170 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main armhf e2fsprogs armhf 1.45.6-1ubuntu1 [510 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/main armhf libcap-ng0 armhf 0.7.9-2.2 [9764 B] Get:69 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libdebconfclient0 armhf 0.252ubuntu1 [5716 B] Get:70 http://ftpmaster.internal/ubuntu groovy/main armhf passwd armhf 1:4.8.1-1ubuntu6 [749 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/main armhf libcom-err2 armhf 1.45.6-1ubuntu1 [8708 B] Get:72 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libprocps8 armhf 2:3.3.16-5ubuntu1 [29.6 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/main armhf libss2 armhf 1.45.6-1ubuntu1 [9384 B] Get:74 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf procps armhf 2:3.3.16-5ubuntu1 [222 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/main armhf ca-certificates all 20190110ubuntu2 [145 kB] Get:76 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libsqlite3-0 armhf 3.32.2-2 [469 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main armhf tzdata all 2020a-0ubuntu1 [293 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main armhf libctf0 armhf 2.34-7ubuntu1 [37.1 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main armhf binutils-arm-linux-gnueabihf armhf 2.34-7ubuntu1 [2093 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main armhf libbinutils armhf 2.34-7ubuntu1 [317 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/main armhf binutils armhf 2.34-7ubuntu1 [3364 B] Get:82 http://ftpmaster.internal/ubuntu groovy/main armhf binutils-common armhf 2.34-7ubuntu1 [207 kB] Get:83 http://ftpmaster.internal/ubuntu groovy/main armhf libctf-nobfd0 armhf 2.34-7ubuntu1 [38.0 kB] Get:84 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libasan5 armhf 9.3.0-14ubuntu1 [387 kB] Get:85 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf g++-9 armhf 9.3.0-14ubuntu1 [6690 kB] Get:86 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gcc-9 armhf 9.3.0-14ubuntu1 [6556 kB] Get:87 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libstdc++-9-dev armhf 9.3.0-14ubuntu1 [1783 kB] Get:88 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libgcc-9-dev armhf 9.3.0-14ubuntu1 [685 kB] Get:89 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf cpp-9 armhf 9.3.0-14ubuntu1 [5878 kB] Get:90 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf gcc-9-base armhf 9.3.0-14ubuntu1 [19.5 kB] Get:91 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf dpkg-dev all 1.19.7ubuntu4 [679 kB] Get:92 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libdpkg-perl all 1.19.7ubuntu4 [230 kB] Get:93 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf make armhf 4.3-3 [156 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main armhf gpg armhf 2.2.20-1ubuntu1 [427 kB] Get:95 http://ftpmaster.internal/ubuntu groovy/main armhf gpgconf armhf 2.2.20-1ubuntu1 [107 kB] Get:96 http://ftpmaster.internal/ubuntu groovy/main armhf gpg-agent armhf 2.2.20-1ubuntu1 [195 kB] Get:97 http://ftpmaster.internal/ubuntu groovy/main armhf pkgbinarymangler all 146 [31.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.8 MB in 2s (30.1 MB/s) (Reading database ... 12562 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19451758 armhf groovy-proposed -c chroot:build-PACKAGEBUILD-19451758 --arch=armhf --dist=groovy-proposed --nolog bppsuite_2.4.1-2.dsc Initiating build PACKAGEBUILD-19451758 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-177-generic #207-Ubuntu SMP Mon Mar 16 01:17:51 UTC 2020 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-043.buildd +==============================================================================+ | bppsuite 2.4.1-2 (armhf) 13 Jun 2020 19:29 | +==============================================================================+ Package: bppsuite Version: 2.4.1-2 Source Version: 2.4.1-2 Distribution: groovy-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/bppsuite-GpWght/bppsuite-2.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/bppsuite-GpWght' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19451758/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- bppsuite_2.4.1-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-CNp7vl/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-CNp7vl/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CNp7vl/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-CNp7vl/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CNp7vl/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-CNp7vl/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (83.0 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-CNp7vl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (73.4 kB/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12564 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev (>= 2.4.0), libbpp-popgen-dev (>= 2.4.0) Filtered Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev (>= 2.4.0), libbpp-popgen-dev (>= 2.4.0) dpkg-deb: building package 'sbuild-build-depends-bppsuite-dummy' in '/<>/resolver-CXSoH3/apt_archive/sbuild-build-depends-bppsuite-dummy.deb'. Ign:1 copy:/<>/resolver-CXSoH3/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CXSoH3/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-CXSoH3/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CXSoH3/apt_archive ./ Sources [255 B] Get:5 copy:/<>/resolver-CXSoH3/apt_archive ./ Packages [571 B] Fetched 2945 B in 0s (93.5 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install bppsuite build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbpp-core-dev libbpp-core4 libbpp-phyl-dev libbpp-phyl12 libbpp-popgen-dev libbpp-popgen8 libbpp-seq-dev libbpp-seq12 libbrotli1 libbsd0 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu66 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtext-unidecode-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 m4 man-db po-debconf tex-common texinfo ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl texlive-base texlive-latex-base texlive-plain-generic texlive-fonts-recommended Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libbpp-core-dev libbpp-core4 libbpp-phyl-dev libbpp-phyl12 libbpp-popgen-dev libbpp-popgen8 libbpp-seq-dev libbpp-seq12 libbrotli1 libbsd0 libcroco3 libcurl4 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libicu66 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtext-unidecode-perl libtool libuchardet0 libuv1 libwind0-heimdal libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml2 m4 man-db po-debconf sbuild-build-depends-bppsuite-dummy tex-common texinfo ucf 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 33.6 MB of archives. After this operation, 160 MB of additional disk space will be used. Get:1 copy:/<>/resolver-CXSoH3/apt_archive ./ sbuild-build-depends-bppsuite-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main armhf libbsd0 armhf 0.10.0-1 [49.8 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main armhf bsdmainutils armhf 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main armhf groff-base armhf 1.22.4-5 [759 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main armhf libpipeline1 armhf 1.5.2-2build1 [23.5 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main armhf man-db armhf 2.9.2-1 [1082 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main armhf ucf all 3.0042 [56.0 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/universe armhf tex-common all 6.15 [33.0 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic-mgc armhf 1:5.38-5 [218 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main armhf libmagic1 armhf 1:5.38-5 [68.4 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main armhf file armhf 1:5.38-5 [22.4 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main armhf libelf1 armhf 0.176-1.1build1 [41.3 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main armhf libexpat1 armhf 2.2.9-1build1 [53.3 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main armhf libglib2.0-0 armhf 2.64.3-1 [1124 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main armhf libicu66 armhf 66.1-2ubuntu2 [8222 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main armhf libxml2 armhf 2.9.10+dfsg-5 [546 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main armhf gettext-base armhf 0.19.8.1-10build1 [46.0 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main armhf libkrb5support0 armhf 1.17-6ubuntu4 [28.0 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main armhf libk5crypto3 armhf 1.17-6ubuntu4 [79.4 kB] Get:21 http://ftpmaster.internal/ubuntu groovy/main armhf libkeyutils1 armhf 1.6.1-2ubuntu1 [9028 B] Get:22 http://ftpmaster.internal/ubuntu groovy/main armhf libkrb5-3 armhf 1.17-6ubuntu4 [287 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main armhf libgssapi-krb5-2 armhf 1.17-6ubuntu4 [101 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main armhf libpsl5 armhf 0.21.0-1.1 [50.3 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main armhf libuv1 armhf 1.38.0-1ubuntu1 [69.0 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main armhf libsigsegv2 armhf 2.12-2 [13.1 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main armhf m4 armhf 1.4.18-4 [187 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main armhf autoconf all 2.69-11.1 [321 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main armhf automake all 1:1.16.2-1ubuntu1 [521 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main armhf autopoint all 0.19.8.1-10build1 [412 kB] Get:32 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http://ftpmaster.internal/ubuntu groovy/main armhf dh-strip-nondeterminism all 1.8.1-1 [5232 B] Get:62 http://ftpmaster.internal/ubuntu groovy/main armhf dwz armhf 0.13-5 [153 kB] Get:63 http://ftpmaster.internal/ubuntu groovy/main armhf libcroco3 armhf 0.6.13-1 [70.5 kB] Get:64 http://ftpmaster.internal/ubuntu groovy/main armhf gettext armhf 0.19.8.1-10build1 [835 kB] Get:65 http://ftpmaster.internal/ubuntu groovy/main armhf intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:66 http://ftpmaster.internal/ubuntu groovy/main armhf po-debconf all 1.0.21 [233 kB] Get:67 http://ftpmaster.internal/ubuntu groovy/main armhf debhelper all 13.1ubuntu1 [885 kB] Get:68 http://ftpmaster.internal/ubuntu groovy/universe armhf libbpp-core4 armhf 2.4.1-4build1 [500 kB] Get:69 http://ftpmaster.internal/ubuntu groovy/universe armhf libbpp-core-dev armhf 2.4.1-4build1 [951 kB] Get:70 http://ftpmaster.internal/ubuntu groovy/universe armhf libbpp-seq12 armhf 2.4.1-4build1 [432 kB] Get:71 http://ftpmaster.internal/ubuntu groovy/universe armhf libbpp-phyl12 armhf 2.4.1-3build1 [1413 kB] Get:72 http://ftpmaster.internal/ubuntu groovy/universe armhf libbpp-seq-dev armhf 2.4.1-4build1 [754 kB] Get:73 http://ftpmaster.internal/ubuntu groovy/universe armhf libbpp-phyl-dev armhf 2.4.1-3build1 [3243 kB] Get:74 http://ftpmaster.internal/ubuntu groovy/universe armhf libbpp-popgen8 armhf 2.4.1-3 [191 kB] Get:75 http://ftpmaster.internal/ubuntu groovy/universe armhf libbpp-popgen-dev armhf 2.4.1-3 [281 kB] Get:76 http://ftpmaster.internal/ubuntu groovy/universe armhf libtext-unidecode-perl all 1.30-1 [99.0 kB] Get:77 http://ftpmaster.internal/ubuntu groovy/main armhf libxml-namespacesupport-perl all 1.12-1 [13.2 kB] Get:78 http://ftpmaster.internal/ubuntu groovy/main armhf libxml-sax-base-perl all 1.09-1 [18.8 kB] Get:79 http://ftpmaster.internal/ubuntu groovy/main armhf libxml-sax-perl all 1.02+dfsg-1 [56.2 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main armhf libxml-libxml-perl armhf 2.0134+dfsg-2 [304 kB] Get:81 http://ftpmaster.internal/ubuntu groovy/universe armhf texinfo armhf 6.7.0.dfsg.2-5 [1361 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.6 MB in 3s (11.3 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 12564 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ... Unpacking libbsd0:armhf (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-5_armhf.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.2-1_armhf.deb ... Unpacking man-db (2.9.2-1) ... 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Unpacking libbpp-seq12:armhf (2.4.1-4build1) ... Selecting previously unselected package libbpp-phyl12:armhf. Preparing to unpack .../69-libbpp-phyl12_2.4.1-3build1_armhf.deb ... Unpacking libbpp-phyl12:armhf (2.4.1-3build1) ... Selecting previously unselected package libbpp-seq-dev. Preparing to unpack .../70-libbpp-seq-dev_2.4.1-4build1_armhf.deb ... Unpacking libbpp-seq-dev (2.4.1-4build1) ... Selecting previously unselected package libbpp-phyl-dev:armhf. Preparing to unpack .../71-libbpp-phyl-dev_2.4.1-3build1_armhf.deb ... Unpacking libbpp-phyl-dev:armhf (2.4.1-3build1) ... Selecting previously unselected package libbpp-popgen8:armhf. Preparing to unpack .../72-libbpp-popgen8_2.4.1-3_armhf.deb ... Unpacking libbpp-popgen8:armhf (2.4.1-3) ... Selecting previously unselected package libbpp-popgen-dev. Preparing to unpack .../73-libbpp-popgen-dev_2.4.1-3_armhf.deb ... Unpacking libbpp-popgen-dev (2.4.1-3) ... Selecting previously unselected package libtext-unidecode-perl. 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Selecting previously unselected package sbuild-build-depends-bppsuite-dummy. Preparing to unpack .../80-sbuild-build-depends-bppsuite-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-bppsuite-dummy (0.invalid.0) ... Setting up libexpat1:armhf (2.2.9-1build1) ... Setting up libpipeline1:armhf (1.5.2-2build1) ... Setting up libkeyutils1:armhf (1.6.1-2ubuntu1) ... Setting up libpsl5:armhf (0.21.0-1.1) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.64.3-1) ... No schema files found: doing nothing. Setting up libicu66:armhf (66.1-2ubuntu2) ... Setting up libdebhelper-perl (13.1ubuntu1) ... Setting up libbrotli1:armhf (1.0.7-6.1) ... Setting up libnghttp2-14:armhf (1.41.0-2) ... Setting up libmagic1:armhf (1:5.38-5) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up file (1:5.38-5) ... Setting up libldap-common (2.4.50+dfsg-1ubuntu1) ... Setting up libkrb5support0:armhf (1.17-6ubuntu4) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:armhf (1.38.0-1ubuntu1) ... Setting up libbpp-core4:armhf (2.4.1-4build1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up ucf (3.0042) ... Setting up libk5crypto3:armhf (1.17-6ubuntu4) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2) ... Setting up libroken18-heimdal:armhf (7.7.0+dfsg-2) ... Setting up librhash0:armhf (1.3.9-1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cmake-data (3.16.3-3ubuntu1) ... Setting up libkrb5-3:armhf (1.17-6ubuntu4) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libbpp-seq12:armhf (2.4.1-4build1) ... Setting up libbsd0:armhf (0.10.0-1) ... Setting up libelf1:armhf (0.176-1.1build1) ... Setting up libxml2:armhf (2.9.10+dfsg-5) ... Setting up libjsoncpp1:armhf (1.7.4-3.1ubuntu2) ... Setting up libheimbase1-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libfile-stripnondeterminism-perl (1.8.1-1) ... Setting up libbpp-phyl12:armhf (2.4.1-3build1) ... Setting up libbpp-popgen8:armhf (2.4.1-3) ... Setting up libtool (2.4.6-14) ... Setting up libarchive13:armhf (3.4.3-1) ... Setting up libasn1-8-heimdal:armhf (7.7.0+dfsg-2) ... Setting up m4 (1.4.18-4) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libhcrypto4-heimdal:armhf (7.7.0+dfsg-2) ... Setting up tex-common (6.15) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libbpp-core-dev (2.4.1-4build1) ... Setting up libwind0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-6ubuntu4) ... Setting up libcroco3:armhf (0.6.13-1) ... Setting up libssh-4:armhf (0.9.4-1ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.8.1-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up automake (1:1.16.2-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libbpp-seq-dev (2.4.1-4build1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libhx509-5-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libbpp-popgen-dev (2.4.1-3) ... Setting up man-db (2.9.2-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libbpp-phyl-dev:armhf (2.4.1-3build1) ... Setting up texinfo (6.7.0.dfsg.2-5) ... Setting up libkrb5-26-heimdal:armhf (7.7.0+dfsg-2) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libgssapi3-heimdal:armhf (7.7.0+dfsg-2) ... Setting up libldap-2.4-2:armhf (2.4.50+dfsg-1ubuntu1) ... Setting up libcurl4:armhf (7.68.0-1ubuntu2) ... Setting up cmake (3.16.3-3ubuntu1) ... Setting up debhelper (13.1ubuntu1) ... Setting up sbuild-build-depends-bppsuite-dummy (0.invalid.0) ... Setting up dh-autoreconf (19) ... Processing triggers for libc-bin (2.31-0ubuntu10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-177-generic arm64 (armv7l) Toolchain package versions: binutils_2.34-7ubuntu1 dpkg-dev_1.19.7ubuntu4 g++-9_9.3.0-14ubuntu1 gcc-9_9.3.0-14ubuntu1 libc6-dev_2.31-0ubuntu10 libstdc++-9-dev_9.3.0-14ubuntu1 libstdc++6_10.1.0-4ubuntu1 linux-libc-dev_5.4.0-37.41 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.6 autoconf_2.69-11.1 automake_1:1.16.2-1ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-7ubuntu1 binutils-arm-linux-gnueabihf_2.34-7ubuntu1 binutils-common_2.34-7ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.35.1-5ubuntu2 build-essential_12.8ubuntu1 bzip2_1.0.8-3 ca-certificates_20190110ubuntu2 cmake_3.16.3-3ubuntu1 cmake-data_3.16.3-3ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-14ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1ubuntu1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu4 dpkg-dev_1.19.7ubuntu4 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.35.1-5ubuntu2 file_1:5.38-5 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-14ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10.1.0-4ubuntu1 gcc-9_9.3.0-14ubuntu1 gcc-9-base_9.3.0-14ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapparmor1_2.13.3-7ubuntu6 libapt-pkg6.0_2.1.6 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-14ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-2 libassuan0_2.5.3-7ubuntu2 libatomic1_10.1.0-4ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-7ubuntu1 libblkid1_2.35.1-5ubuntu2 libbpp-core-dev_2.4.1-4build1 libbpp-core4_2.4.1-4build1 libbpp-phyl-dev_2.4.1-3build1 libbpp-phyl12_2.4.1-3build1 libbpp-popgen-dev_2.4.1-3 libbpp-popgen8_2.4.1-3 libbpp-seq-dev_2.4.1-4build1 libbpp-seq12_2.4.1-4build1 libbrotli1_1.0.7-6.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-3 libc-bin_2.31-0ubuntu10 libc-dev-bin_2.31-0ubuntu10 libc6_2.31-0ubuntu10 libc6-dev_2.31-0ubuntu10 libcap-ng0_0.7.9-2.2 libcap2_1:2.34-2 libcc1-0_10.1.0-4ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1ubuntu1 libcrypt1_1:4.4.16-1ubuntu1 libcryptsetup12_2:2.3.1-1ubuntu1 libctf-nobfd0_2.34-7ubuntu1 libctf0_2.34-7ubuntu1 libcurl4_7.68.0-1ubuntu2 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.252ubuntu1 libdebhelper-perl_13.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.19.7ubuntu4 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libfdisk1_2.35.1-5ubuntu2 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.1-1 libgcc-9-dev_9.3.0-14ubuntu1 libgcc-s1_10.1.0-4ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.3-1 libgmp10_2:6.2.0+dfsg-5 libgnutls30_3.6.13-4ubuntu2 libgomp1_10.1.0-4ubuntu1 libgpg-error0_1.38-1 libgssapi-krb5-2_1.17-6ubuntu4 libgssapi3-heimdal_7.7.0+dfsg-2 libhcrypto4-heimdal_7.7.0+dfsg-2 libheimbase1-heimdal_7.7.0+dfsg-2 libheimntlm0-heimdal_7.7.0+dfsg-2 libhogweed5_3.5.1+really3.5.1-2 libhx509-5-heimdal_7.7.0+dfsg-2 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libjson-c4_0.13.1+dfsg-7ubuntu1 libjsoncpp1_1.7.4-3.1ubuntu2 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-2 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 libldap-2.4-2_2.4.50+dfsg-1ubuntu1 libldap-common_2.4.50+dfsg-1ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-5ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.41.0-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-5ubuntu1 libpsl5_0.21.0-1.1 libreadline8_8.0-4 librhash0_1.3.9-1 libroken18-heimdal_7.7.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1ubuntu3 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.1-5ubuntu2 libsqlite3-0_3.32.2-2 libss2_1.45.6-1ubuntu1 libssh-4_0.9.4-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-14ubuntu1 libstdc++6_10.1.0-4ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.6-1ubuntu1 libtasn1-6_4.16.0-2 libtext-unidecode-perl_1.30-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-4ubuntu1 libuchardet0_0.0.7-1 libudev1_245.6-1ubuntu1 libunistring2_0.9.10-4 libuuid1_2.35.1-5ubuntu2 libuv1_1.38.0-1ubuntu1 libwind0-heimdal_7.7.0+dfsg-2 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml2_2.9.10+dfsg-5 libzstd1_1.4.5+dfsg-2 linux-libc-dev_5.4.0-37.41 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-3 man-db_2.9.2-1 mawk_1.3.4.20200120-2 mount_2.35.1-5ubuntu2 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-3build1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu1 readline-common_8.0-4 sbuild-build-depends-bppsuite-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.6-1ubuntu1 systemd-sysv_245.6-1ubuntu1 systemd-timesyncd_245.6-1ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tex-common_6.15 texinfo_6.7.0.dfsg.2-5 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.02.11.2 ucf_3.0042 util-linux_2.35.1-5ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jun 12 20:24:40 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bppsuite_2.4.1-2.dsc dpkg-source: info: extracting bppsuite in bppsuite-2.4.1 dpkg-source: info: unpacking bppsuite_2.4.1.orig.tar.gz dpkg-source: info: unpacking bppsuite_2.4.1-2.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19451758 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19451758 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19451758 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DCMAKE_BUILD_TYPE=RelWithDebInfo cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=RelWithDebInfo .. -- The CXX compiler identification is GNU 9.3.1 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-popgen 8.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-popgen.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY -- Build files have been written to: /<>/obj-arm-linux-gnueabihf make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles /<>/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake --color= make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake --color= Scanning dependencies of target bppreroot Scanning dependencies of target bppseqgen make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' Scanning dependencies of target bppml make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build Scanning dependencies of target bppdist make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 5%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o [ 5%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /<>/bppSuite/bppSeqGen.cpp cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /<>/bppSuite/bppReRoot.cpp [ 7%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o [ 10%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /<>/bppSuite/bppDist.cpp cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppml.dir/bppML.cpp.o -c /<>/bppSuite/bppML.cpp In file included from /usr/include/c++/9/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppSeqGen.cpp:50: /usr/include/c++/9/bits/stl_vector.h: In constructor ‘std::vector<_Tp, _Alloc>::vector(_InputIterator, _InputIterator, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/stl_vector.h:650:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 650 | vector(_InputIterator __first, _InputIterator __last, | ^~~~~~ /usr/include/c++/9/bits/stl_vector.h:650:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 In file included from /usr/include/c++/9/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppSeqGen.cpp:50: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppSeqGen.cpp:50: /usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector > bpp::TreeTemplate::getBranchLengths() [with N = bpp::Node]’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h: In function ‘void readTreesCoaSim(std::ifstream&, std::vector&, std::vector >&)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 13%] Linking CXX executable bppreroot cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 13%] Built target bppreroot make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake --color= Scanning dependencies of target bpppars make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 15%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /<>/bppSuite/bppPars.cpp /<>/bppSuite/bppSeqGen.cpp: In function ‘int main(int, char**)’: /<>/bppSuite/bppSeqGen.cpp:550:20: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 550 | tmpRates = vector(rates.begin() + previousPos, rates.begin() + currentPos); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/bppSuite/bppSeqGen.cpp:575:22: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 575 | tmpRates = vector(rates.begin() + previousPos + 1, rates.begin() + currentPos); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 18%] Linking CXX executable bppseqgen cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 [ 21%] Linking CXX executable bppdist cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 21%] Built target bppseqgen make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake --color= Scanning dependencies of target bpptreedraw make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 23%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /<>/bppSuite/bppTreeDraw.cpp make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 23%] Built target bppdist make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake --color= Scanning dependencies of target bppseqman make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 26%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /<>/bppSuite/bppSeqMan.cpp [ 28%] Linking CXX executable bppml cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 28%] Built target bppml make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake --color= Scanning dependencies of target bppalnscore make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 31%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /<>/bppSuite/bppAlnScore.cpp [ 34%] Linking CXX executable bpppars cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 34%] Built target bpppars make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake --color= Scanning dependencies of target bppconsense make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 36%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /<>/bppSuite/bppConsense.cpp [ 39%] Linking CXX executable bppalnscore cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 [ 42%] Linking CXX executable bppseqman cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 42%] Built target bppalnscore make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake --color= Scanning dependencies of target bppancestor make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 44%] Building CXX object bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /<>/bppSuite/bppAncestor.cpp make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 44%] Built target bppseqman make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake --color= Scanning dependencies of target bppmixedlikelihoods make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 47%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /<>/bppSuite/bppMixedLikelihoods.cpp [ 50%] Linking CXX executable bpptreedraw cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 50%] Built target bpptreedraw make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/bppSuite /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/bppSuite /<>/obj-arm-linux-gnueabihf/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake --color= Scanning dependencies of target bpppopstats make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 52%] Building CXX object bppSuite/CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -fPIE -o CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /<>/bppSuite/bppPopStats.cpp [ 55%] Linking CXX executable bppconsense cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 55%] Built target bppconsense make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/doc /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/doc /<>/obj-arm-linux-gnueabihf/doc/CMakeFiles/info.dir/DependInfo.cmake --color= Scanning dependencies of target info make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 57%] Generating info page cd /<>/obj-arm-linux-gnueabihf/doc && /usr/bin/makeinfo --no-split -o /<>/obj-arm-linux-gnueabihf/doc/bppsuite.info /<>/doc/bppsuite.texi [ 60%] Compressing info page cd /<>/obj-arm-linux-gnueabihf/doc && /bin/gzip -c -n -9 /<>/obj-arm-linux-gnueabihf/doc/bppsuite.info > /<>/obj-arm-linux-gnueabihf/doc/bppsuite.info.gz make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 60%] Built target info make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/depend make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' cd /<>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/man /<>/obj-arm-linux-gnueabihf /<>/obj-arm-linux-gnueabihf/man /<>/obj-arm-linux-gnueabihf/man/CMakeFiles/man.dir/DependInfo.cmake --color= Scanning dependencies of target man make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' make -f man/CMakeFiles/man.dir/build.make man/CMakeFiles/man.dir/build make[3]: Entering directory '/<>/obj-arm-linux-gnueabihf' [ 63%] Compressing manpage bppalnscore.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppalnscore.1 > /<>/obj-arm-linux-gnueabihf/man/bppalnscore.1.gz [ 65%] Compressing manpage bppancestor.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppancestor.1 > /<>/obj-arm-linux-gnueabihf/man/bppancestor.1.gz [ 68%] Compressing manpage bppconsense.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppconsense.1 > /<>/obj-arm-linux-gnueabihf/man/bppconsense.1.gz [ 71%] Compressing manpage bppdist.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppdist.1 > /<>/obj-arm-linux-gnueabihf/man/bppdist.1.gz [ 73%] Compressing manpage bppmixedlikelihoods.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppmixedlikelihoods.1 > /<>/obj-arm-linux-gnueabihf/man/bppmixedlikelihoods.1.gz [ 76%] Compressing manpage bppml.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppml.1 > /<>/obj-arm-linux-gnueabihf/man/bppml.1.gz [ 78%] Compressing manpage bpppars.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bpppars.1 > /<>/obj-arm-linux-gnueabihf/man/bpppars.1.gz [ 81%] Compressing manpage bpppopstats.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bpppopstats.1 > /<>/obj-arm-linux-gnueabihf/man/bpppopstats.1.gz [ 84%] Compressing manpage bppreroot.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppreroot.1 > /<>/obj-arm-linux-gnueabihf/man/bppreroot.1.gz [ 86%] Compressing manpage bppseqgen.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppseqgen.1 > /<>/obj-arm-linux-gnueabihf/man/bppseqgen.1.gz [ 89%] Compressing manpage bppseqman.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bppseqman.1 > /<>/obj-arm-linux-gnueabihf/man/bppseqman.1.gz [ 92%] Compressing manpage bpptreedraw.1 cd /<>/obj-arm-linux-gnueabihf/man && /bin/gzip -c -n -9 /<>/man/bpptreedraw.1 > /<>/obj-arm-linux-gnueabihf/man/bpptreedraw.1.gz make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 92%] Built target man In file included from /usr/include/c++/9/vector:72, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppMixedLikelihoods.cpp:50: /usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/9/vector:67, from /usr/include/Bpp/Io/FileTools.h:46, from /usr/include/Bpp/App/ApplicationTools.h:44, from /<>/bppSuite/bppMixedLikelihoods.cpp:50: /usr/include/c++/9/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ /usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 1195 | _M_realloc_insert(end(), __x); | ^~~~~~~~~~~~~~~~~ [ 94%] Linking CXX executable bppmixedlikelihoods cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 94%] Built target bppmixedlikelihoods [ 97%] Linking CXX executable bppancestor cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [ 97%] Built target bppancestor [100%] Linking CXX executable bpppopstats cd /<>/obj-arm-linux-gnueabihf/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -O2 -g -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/arm-linux-gnueabihf/libbpp-phyl.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-popgen.so.8.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/<>/obj-arm-linux-gnueabihf' [100%] Built target bpppopstats make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /<>/debian/tmp/usr/bin/bppml -- Installing: /<>/debian/tmp/usr/bin/bppseqgen -- Installing: /<>/debian/tmp/usr/bin/bppdist -- Installing: /<>/debian/tmp/usr/bin/bpppars -- Installing: /<>/debian/tmp/usr/bin/bppseqman -- Installing: /<>/debian/tmp/usr/bin/bppconsense -- Installing: /<>/debian/tmp/usr/bin/bppancestor -- Installing: /<>/debian/tmp/usr/bin/bppmixedlikelihoods -- Installing: /<>/debian/tmp/usr/bin/bppreroot -- Installing: /<>/debian/tmp/usr/bin/bpptreedraw -- Installing: /<>/debian/tmp/usr/bin/bppalnscore -- Installing: /<>/debian/tmp/usr/bin/bpppopstats -- Installing: /<>/debian/tmp/usr/share/info/bppsuite.info.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppalnscore.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppancestor.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppconsense.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppdist.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppmixedlikelihoods.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppml.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bpppars.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bpppopstats.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppreroot.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppseqgen.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bppseqman.1.gz -- Installing: /<>/debian/tmp/usr/share/man/man1/bpptreedraw.1.gz make[1]: Leaving directory '/<>/obj-arm-linux-gnueabihf' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -name "*.dnd" -exec chmod -x \{\} \; make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppseqman contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppalnscore contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppconsense contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppmixedlikelihoods contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppseqgen contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppdist contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppml contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppreroot contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpppopstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bppancestor contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpptreedraw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bppsuite/usr/bin/bpppars contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing bppsuite (in debian/bppsuite); do_strip: , oemstrip: pkgstriptranslations: processing bppsuite-dbgsym (in debian/.debhelper/bppsuite/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bppsuite/DEBIAN/control, package bppsuite, directory debian/bppsuite pkgstripfiles: processing control file: debian/.debhelper/bppsuite/dbgsym-root/DEBIAN/control, package bppsuite-dbgsym, directory debian/.debhelper/bppsuite/dbgsym-root dpkg-deb: building package 'bppsuite-dbgsym' in 'debian/.debhelper/scratch-space/build-bppsuite/bppsuite-dbgsym_2.4.1-2_armhf.deb'. pkgstripfiles: Truncating usr/share/doc/bppsuite/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package bppsuite ... pkgstripfiles: No PNG files. dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-2_armhf.deb'. Renaming bppsuite-dbgsym_2.4.1-2_armhf.deb to bppsuite-dbgsym_2.4.1-2_armhf.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../bppsuite_2.4.1-2_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200613-1932 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ bppsuite_2.4.1-2_armhf.changes: ------------------------------- Format: 1.8 Date: Fri, 12 Jun 2020 06:00:09 +0530 Source: bppsuite Binary: bppsuite Architecture: armhf Version: 2.4.1-2 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Pranav Ballaney Description: bppsuite - Bio++ program suite Changes: bppsuite (2.4.1-2) unstable; urgency=medium . * Team upload. . [ Pranav Ballaney ] * Add reference data for autopkgtests * Install examples for bppsuite * Add autopkgtests * Install docs . [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Refer to specific version of license GPL-2+. * Fix day-of-week for changelog entry 0.3.0. * Cleanup installation of manpages Checksums-Sha1: e7efc94c61cfbf66c9e2fc3cfcd8efd8cd57dc1c 6139776 bppsuite-dbgsym_2.4.1-2_armhf.ddeb 8a5058316cc9ac42dc585fb7dc1e66465f29a53e 6949 bppsuite_2.4.1-2_armhf.buildinfo 25e3c54a677b1c963a149fa91c5a70a6d060e5e4 332692 bppsuite_2.4.1-2_armhf.deb Checksums-Sha256: 0f6464359c514f2b2f4caf9632e1180962a3271201c52f789e8a0846900e1f91 6139776 bppsuite-dbgsym_2.4.1-2_armhf.ddeb 2b50a27915f972e6b291b29365e8ff5d1a1c85b82c0b247be12ac7189b461f5b 6949 bppsuite_2.4.1-2_armhf.buildinfo 3263e4774adf2e713b60ba2d2aa126bc1736eec0b0202d4a6e8329071d301853 332692 bppsuite_2.4.1-2_armhf.deb Files: 3613e06c5a8630b346c8458bfce848e8 6139776 debug optional bppsuite-dbgsym_2.4.1-2_armhf.ddeb 183a403ebf99668d6e3039b563e370e0 6949 science optional bppsuite_2.4.1-2_armhf.buildinfo d9393da3559d916ab58c8159fe584a79 332692 science optional bppsuite_2.4.1-2_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ bppsuite_2.4.1-2_armhf.deb -------------------------- new debian package, version 2.0. size 332692 bytes: control archive=1900 bytes. 1660 bytes, 34 lines control 1817 bytes, 29 lines md5sums Package: bppsuite Version: 2.4.1-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1303 Depends: libbpp-core4 (>= 2.4.1), libbpp-phyl12 (>= 2.4.1), libbpp-popgen8 (>= 2.4.1), libbpp-seq12 (>= 2.4.1), libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 9) Suggests: bppsuite-examples Section: science Priority: optional Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Description: Bio++ program suite The Bio++ Program Suite is a package of programs using the Bio++ libraries and dedicated to Phylogenetics and Molecular Evolution. All programs are independent, but can be combined to perform rather complex analyses. These programs use the interface helper tools of the libraries, and hence share the same syntax. They also have several options in common, which may also be shared by third-party software. . The following programs are included: - BppML for maximum likelihood analysis, - BppSeqGen for sequences simulation, - BppAncestor for ancestral states reconstruction, - BppDist for distance methods, - BppPars for parsimony analysis, - BppSeqMan for file conversion and sequence manipulation, - BppConsense for building consensus tree and computing bootstrap values, - BppReRoot for tree rerooting. - BppTreeDraw for tree drawing. - BppAlnScore for comparing alignments and computing alignment scores. - BppMixedLikelihoods for computing site per site likelihoods of components of mixture models. - BppPopGen for population genetics analyses. drwxr-xr-x root/root 0 2020-06-12 00:30 ./ drwxr-xr-x root/root 0 2020-06-12 00:30 ./usr/ drwxr-xr-x root/root 0 2020-06-12 00:30 ./usr/bin/ -rwxr-xr-x root/root 50836 2020-06-12 00:30 ./usr/bin/bppalnscore -rwxr-xr-x root/root 132756 2020-06-12 00:30 ./usr/bin/bppancestor -rwxr-xr-x root/root 67220 2020-06-12 00:30 ./usr/bin/bppconsense -rwxr-xr-x root/root 161428 2020-06-12 00:30 ./usr/bin/bppdist -rwxr-xr-x root/root 91796 2020-06-12 00:30 ./usr/bin/bppmixedlikelihoods -rwxr-xr-x root/root 161428 2020-06-12 00:30 ./usr/bin/bppml -rwxr-xr-x root/root 75412 2020-06-12 00:30 ./usr/bin/bpppars -rwxr-xr-x root/root 177812 2020-06-12 00:30 ./usr/bin/bpppopstats -rwxr-xr-x root/root 79508 2020-06-12 00:30 ./usr/bin/bppreroot -rwxr-xr-x root/root 145044 2020-06-12 00:30 ./usr/bin/bppseqgen -rwxr-xr-x root/root 50836 2020-06-12 00:30 ./usr/bin/bppseqman -rwxr-xr-x root/root 54932 2020-06-12 00:30 ./usr/bin/bpptreedraw drwxr-xr-x root/root 0 2020-06-12 00:30 ./usr/share/ drwxr-xr-x root/root 0 2020-06-12 00:30 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-06-12 00:30 ./usr/share/doc/bppsuite/ -rw-r--r-- root/root 278 2020-06-12 00:30 ./usr/share/doc/bppsuite/README.test -rw-r--r-- root/root 94 2020-06-12 00:30 ./usr/share/doc/bppsuite/README.test_data -rw-r--r-- root/root 1416 2020-06-12 00:30 ./usr/share/doc/bppsuite/changelog.Debian.gz -rw-r--r-- root/root 23164 2020-06-12 00:30 ./usr/share/doc/bppsuite/copyright drwxr-xr-x root/root 0 2020-06-12 00:30 ./usr/share/info/ -rw-r--r-- root/root 29945 2020-06-12 00:30 ./usr/share/info/bppsuite.info.gz drwxr-xr-x root/root 0 2020-06-12 00:30 ./usr/share/man/ drwxr-xr-x root/root 0 2020-06-12 00:30 ./usr/share/man/man1/ -rw-r--r-- root/root 402 2020-06-12 00:30 ./usr/share/man/man1/bppalnscore.1.gz -rw-r--r-- root/root 390 2020-06-12 00:30 ./usr/share/man/man1/bppancestor.1.gz -rw-r--r-- root/root 361 2020-06-12 00:30 ./usr/share/man/man1/bppconsense.1.gz -rw-r--r-- root/root 383 2020-06-12 00:30 ./usr/share/man/man1/bppdist.1.gz -rw-r--r-- root/root 494 2020-06-12 00:30 ./usr/share/man/man1/bppmixedlikelihoods.1.gz -rw-r--r-- root/root 370 2020-06-12 00:30 ./usr/share/man/man1/bppml.1.gz -rw-r--r-- root/root 361 2020-06-12 00:30 ./usr/share/man/man1/bpppars.1.gz -rw-r--r-- root/root 371 2020-06-12 00:30 ./usr/share/man/man1/bpppopstats.1.gz -rw-r--r-- root/root 357 2020-06-12 00:30 ./usr/share/man/man1/bppreroot.1.gz -rw-r--r-- root/root 388 2020-06-12 00:30 ./usr/share/man/man1/bppseqgen.1.gz -rw-r--r-- root/root 465 2020-06-12 00:30 ./usr/share/man/man1/bppseqman.1.gz -rw-r--r-- root/root 429 2020-06-12 00:30 ./usr/share/man/man1/bpptreedraw.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 127180 Build-Time: 161 Distribution: groovy-proposed Host Architecture: armhf Install-Time: 30 Job: bppsuite_2.4.1-2.dsc Machine Architecture: arm64 Package: bppsuite Package-Time: 193 Source-Version: 2.4.1-2 Space: 127180 Status: successful Version: 2.4.1-2 -------------------------------------------------------------------------------- Finished at 20200613-1932 Build needed 00:03:13, 127180k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=armhf PACKAGEBUILD-19451758 Scanning for processes to kill in build PACKAGEBUILD-19451758