RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-025 4.4.0-81-generic #104-Ubuntu SMP Wed Jun 14 08:15:33 UTC 2017 ppc64le Buildd toolchain package versions: launchpad-buildd_144 python-lpbuildd_144 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 22 Jun 12:21:37 ntpdate[1775]: adjust time server 10.211.37.1 offset -0.023850 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12604587', '/home/buildd/filecache-default/6f2309b02db3cfdb85003f9659f6426e55596487'] Unpacking chroot for build PACKAGEBUILD-12604587 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12604587'] Mounting chroot for build PACKAGEBUILD-12604587 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12604587', 'deb http://ftpmaster.internal/ubuntu artful main universe', 'deb http://ftpmaster.internal/ubuntu artful-security main universe', 'deb http://ftpmaster.internal/ubuntu artful-updates main universe', 'deb http://ftpmaster.internal/ubuntu artful-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-12604587 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12604587', 'ppc64el'] Updating debian chroot for build PACKAGEBUILD-12604587 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main ppc64el Packages [1130 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [566 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe ppc64el Packages [7971 kB] Get:8 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4757 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el Packages [92.0 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [59.3 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe ppc64el Packages [427 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [235 kB] Fetched 15.8 MB in 3s (4161 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-7-base The following packages will be upgraded: advancecomp apt apt-transport-https bash binutils bsdutils ca-certificates cpp-6 debianutils dmsetup dpkg dpkg-dev g++-6 gcc-6 gcc-6-base init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcc1-0 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libip4tc0 libitm1 libkmod2 libkrb5-26-heimdal libldap-2.4-2 libldap-common libmount1 libperl5.24 libpng16-16 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd perl perl-base perl-modules-5.24 systemd systemd-sysv tzdata util-linux 76 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 47.0 MB of archives. After this operation, 942 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main ppc64el debianutils ppc64el 4.8.1.1 [85.9 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main ppc64el bash ppc64el 4.4-5ubuntu1 [644 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main ppc64el bsdutils ppc64el 1:2.29-1ubuntu3 [54.8 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main ppc64el dpkg ppc64el 1.18.24ubuntu1 [1122 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main ppc64el login ppc64el 1:4.2-3.2ubuntu2 [301 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main ppc64el util-linux ppc64el 2.29-1ubuntu3 [881 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main ppc64el mount ppc64el 2.29-1ubuntu3 [126 kB] Get:8 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libperl5.24 ppc64el 5.24.1-4ubuntu1 [3307 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el perl ppc64el 5.24.1-4ubuntu1 [219 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el perl-base ppc64el 5.24.1-4ubuntu1 [1229 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el perl-modules-5.24 all 5.24.1-4ubuntu1 [2663 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el init-system-helpers all 1.48 [37.8 kB] Get:13 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el gcc-7-base ppc64el 7.1.0-7ubuntu1 [18.5 kB] Get:14 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libgcc1 ppc64el 1:7.1.0-7ubuntu1 [29.7 kB] Get:15 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libstdc++6 ppc64el 7.1.0-7ubuntu1 [446 kB] Get:16 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libapt-pkg5.0 ppc64el 1.4.6 [820 kB] Get:17 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el apt ppc64el 1.4.6 [1132 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main ppc64el libip4tc0 ppc64el 1.6.0+snapshot20161117-6ubuntu1 [20.3 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main ppc64el libapparmor1 ppc64el 2.11.0-2ubuntu8 [29.4 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main ppc64el libaudit-common all 1:2.6.6-1ubuntu2 [4626 B] Get:21 http://ftpmaster.internal/ubuntu artful/main ppc64el libaudit1 ppc64el 1:2.6.6-1ubuntu2 [40.2 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main ppc64el libselinux1 ppc64el 2.6-3build1 [67.0 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main ppc64el libsemanage-common all 2.6-2build1 [6738 B] Get:24 http://ftpmaster.internal/ubuntu artful/main ppc64el libsemanage1 ppc64el 2.6-2build1 [75.7 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main ppc64el passwd ppc64el 1:4.2-3.2ubuntu2 [754 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main ppc64el libuuid1 ppc64el 2.29-1ubuntu3 [15.2 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main ppc64el libblkid1 ppc64el 2.29-1ubuntu3 [102 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main ppc64el libgcrypt20 ppc64el 1.7.7-2 [415 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main ppc64el libkmod2 ppc64el 24-1ubuntu1 [36.4 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main ppc64el libmount1 ppc64el 2.29-1ubuntu3 [107 kB] Get:31 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el systemd ppc64el 233-8ubuntu1 [2256 kB] Get:32 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libsystemd0 ppc64el 233-8ubuntu1 [203 kB] Get:33 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el init ppc64el 1.48 [5808 B] Get:34 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el systemd-sysv ppc64el 233-8ubuntu1 [12.7 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main ppc64el libfdisk1 ppc64el 2.29-1ubuntu3 [132 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main ppc64el libsmartcols1 ppc64el 2.29-1ubuntu3 [64.2 kB] Get:37 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libudev1 ppc64el 233-8ubuntu1 [54.7 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.137-2ubuntu2 [128 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main ppc64el dmsetup ppc64el 2:1.02.137-2ubuntu2 [69.8 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main ppc64el libroken18-heimdal ppc64el 7.1.0+dfsg-13 [39.0 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main ppc64el libasn1-8-heimdal ppc64el 7.1.0+dfsg-13 [137 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main ppc64el libtasn1-6 ppc64el 4.12-2 [35.8 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main ppc64el libgnutls30 ppc64el 3.5.8-6ubuntu1 [576 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main ppc64el libheimbase1-heimdal ppc64el 7.1.0+dfsg-13 [28.4 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main ppc64el libhcrypto4-heimdal ppc64el 7.1.0+dfsg-13 [94.5 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main ppc64el libwind0-heimdal ppc64el 7.1.0+dfsg-13 [47.9 kB] Get:47 http://ftpmaster.internal/ubuntu artful/main ppc64el libhx509-5-heimdal ppc64el 7.1.0+dfsg-13 [101 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main ppc64el libsqlite3-0 ppc64el 3.16.2-5 [439 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main ppc64el libkrb5-26-heimdal ppc64el 7.1.0+dfsg-13 [194 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main ppc64el libheimntlm0-heimdal ppc64el 7.1.0+dfsg-13 [15.6 kB] Get:51 http://ftpmaster.internal/ubuntu artful/main ppc64el libgssapi3-heimdal ppc64el 7.1.0+dfsg-13 [86.5 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main ppc64el libldap-2.4-2 ppc64el 2.4.44+dfsg-5ubuntu1 [145 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main ppc64el libldap-common all 2.4.44+dfsg-5ubuntu1 [17.5 kB] Get:54 http://ftpmaster.internal/ubuntu artful/main ppc64el libssl1.0.0 ppc64el 1.0.2g-1ubuntu13 [822 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main ppc64el tzdata all 2017b-2 [203 kB] Get:56 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el apt-transport-https ppc64el 1.4.6 [38.9 kB] Get:57 http://ftpmaster.internal/ubuntu artful/main ppc64el openssl ppc64el 1.0.2g-1ubuntu13 [483 kB] Get:58 http://ftpmaster.internal/ubuntu artful/main ppc64el ca-certificates all 20161130+nmu1 [186 kB] Get:59 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libpng16-16 ppc64el 1.6.29-3 [190 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main ppc64el advancecomp ppc64el 2.0-1 [255 kB] Get:61 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el binutils ppc64el 2.28-6ubuntu1 [2336 kB] Get:62 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libgomp1 ppc64el 7.1.0-7ubuntu1 [69.3 kB] Get:63 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libitm1 ppc64el 7.1.0-7ubuntu1 [29.6 kB] Get:64 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libubsan0 ppc64el 7.1.0-7ubuntu1 [128 kB] Get:65 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libatomic1 ppc64el 7.1.0-7ubuntu1 [8468 B] Get:66 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libasan3 ppc64el 6.3.0-19ubuntu1 [278 kB] Get:67 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el g++-6 ppc64el 6.3.0-19ubuntu1 [6432 kB] Get:68 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libstdc++-6-dev ppc64el 6.3.0-19ubuntu1 [1442 kB] Get:69 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el gcc-6 ppc64el 6.3.0-19ubuntu1 [6243 kB] Get:70 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libgcc-6-dev ppc64el 6.3.0-19ubuntu1 [659 kB] Get:71 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libcc1-0 ppc64el 7.1.0-7ubuntu1 [39.1 kB] Get:72 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el cpp-6 ppc64el 6.3.0-19ubuntu1 [5672 kB] Get:73 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el gcc-6-base ppc64el 6.3.0-19ubuntu1 [17.4 kB] Get:74 http://ftpmaster.internal/ubuntu artful/main ppc64el dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:75 http://ftpmaster.internal/ubuntu artful/main ppc64el libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:76 http://ftpmaster.internal/ubuntu artful/main ppc64el libusb-0.1-4 ppc64el 2:0.1.12-31 [16.0 kB] Get:77 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el linux-libc-dev ppc64el 4.11.0-8.13 [911 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.0 MB in 0s (49.2 MB/s) (Reading database ... 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Setting up systemd (233-8ubuntu1) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.hostname1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.locale1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.network1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.resolve1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.timedate1.conf ... (Reading database ... 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Preparing to unpack .../30-libstdc++-6-dev_6.3.0-19ubuntu1_ppc64el.deb ... Unpacking libstdc++-6-dev:ppc64el (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../31-gcc-6_6.3.0-19ubuntu1_ppc64el.deb ... Unpacking gcc-6 (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../32-libgcc-6-dev_6.3.0-19ubuntu1_ppc64el.deb ... Unpacking libgcc-6-dev:ppc64el (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../33-libcc1-0_7.1.0-7ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (7.1.0-7ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../34-cpp-6_6.3.0-19ubuntu1_ppc64el.deb ... Unpacking cpp-6 (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../35-gcc-6-base_6.3.0-19ubuntu1_ppc64el.deb ... Unpacking gcc-6-base:ppc64el (6.3.0-19ubuntu1) over (6.3.0-14ubuntu3) ... Preparing to unpack .../36-dpkg-dev_1.18.24ubuntu1_all.deb ... Unpacking dpkg-dev (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../37-libdpkg-perl_1.18.24ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.24ubuntu1) over (1.18.23ubuntu4) ... Preparing to unpack .../38-libusb-0.1-4_2%3a0.1.12-31_ppc64el.deb ... Unpacking libusb-0.1-4:ppc64el (2:0.1.12-31) over (2:0.1.12-30) ... Preparing to unpack .../39-linux-libc-dev_4.11.0-8.13_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (4.11.0-8.13) over (4.10.0-20.22) ... Setting up libgomp1:ppc64el (7.1.0-7ubuntu1) ... Setting up libatomic1:ppc64el (7.1.0-7ubuntu1) ... Setting up perl-modules-5.24 (5.24.1-4ubuntu1) ... Setting up libperl5.24:ppc64el (5.24.1-4ubuntu1) ... Setting up libcc1-0:ppc64el (7.1.0-7ubuntu1) ... Setting up apt-transport-https (1.4.6) ... Setting up libssl1.0.0:ppc64el (1.0.2g-1ubuntu13) ... Setting up libpng16-16:ppc64el (1.6.29-3) ... Setting up libldap-common (2.4.44+dfsg-5ubuntu1) ... Setting up tzdata (2017b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jun 22 12:21:58 UTC 2017. Universal Time is now: Thu Jun 22 12:21:58 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (233-8ubuntu1) ... Setting up libubsan0:ppc64el (7.1.0-7ubuntu1) ... Setting up gcc-6-base:ppc64el (6.3.0-19ubuntu1) ... Setting up linux-libc-dev:ppc64el (4.11.0-8.13) ... Setting up advancecomp (2.0-1) ... Setting up libroken18-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up libdevmapper1.02.1:ppc64el (2:1.02.137-2ubuntu2) ... Setting up libtasn1-6:ppc64el (4.12-2) ... Setting up perl (5.24.1-4ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libheimbase1-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:ppc64el (3.16.2-5) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.28-6ubuntu1) ... Setting up cpp-6 (6.3.0-19ubuntu1) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libusb-0.1-4:ppc64el (2:0.1.12-31) ... Setting up libitm1:ppc64el (7.1.0-7ubuntu1) ... Setting up libasan3:ppc64el (6.3.0-19ubuntu1) ... Setting up libgcc-6-dev:ppc64el (6.3.0-19ubuntu1) ... Setting up libstdc++-6-dev:ppc64el (6.3.0-19ubuntu1) ... Setting up libwind0-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up init (1.48) ... Setting up libasn1-8-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up libhcrypto4-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up libgnutls30:ppc64el (3.5.8-6ubuntu1) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up libhx509-5-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up gcc-6 (6.3.0-19ubuntu1) ... Setting up g++-6 (6.3.0-19ubuntu1) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up libkrb5-26-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up libheimntlm0-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up libgssapi3-heimdal:ppc64el (7.1.0+dfsg-13) ... Setting up libldap-2.4-2:ppc64el (2.4.44+dfsg-5ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12604587', 'ppc64el', 'artful-proposed', '-c', 'chroot:autobuild', '--arch=ppc64el', '--dist=artful-proposed', '--purge=never', '--nolog', 'canu_1.5+dfsg-1.dsc'] Initiating build PACKAGEBUILD-12604587 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-81-generic #104-Ubuntu SMP Wed Jun 14 08:15:33 UTC 2017 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-ppc64el-025.buildd +==============================================================================+ | canu 1.5+dfsg-1 (ppc64el) 22 Jun 2017 12:22 | +==============================================================================+ Package: canu Version: 1.5+dfsg-1 Source Version: 1.5+dfsg-1 Distribution: artful-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/canu-DHc98i/canu-1.5+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/canu-DHc98i' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12604587/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- canu_1.5+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-4ugYvf/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-4ugYvf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-4ugYvf/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-4ugYvf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-4ugYvf/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-4ugYvf/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 780 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-4ugYvf/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [780 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 780 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12359 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), libboost-dev, libmeryl-dev, libfilesys-df-perl Filtered Build-Depends: debhelper (>= 9), libboost-dev, libmeryl-dev, libfilesys-df-perl dpkg-deb: building package 'sbuild-build-depends-canu-dummy' in '/<>/resolver-aQlrDx/apt_archive/sbuild-build-depends-canu-dummy.deb'. Ign:1 copy:/<>/resolver-aQlrDx/apt_archive ./ InRelease Get:2 copy:/<>/resolver-aQlrDx/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-aQlrDx/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-aQlrDx/apt_archive ./ Sources [233 B] Get:5 copy:/<>/resolver-aQlrDx/apt_archive ./ Packages [547 B] Fetched 2899 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install canu build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-dev libboost1.62-dev libbsd0 libcroco3 libfile-stripnondeterminism-perl libfilesys-df-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libmeryl-dev libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.62-doc libboost-atomic1.62-dev libboost-chrono1.62-dev libboost-context1.62-dev libboost-coroutine1.62-dev libboost-date-time1.62-dev libboost-exception1.62-dev libboost-fiber1.62-dev libboost-filesystem1.62-dev libboost-graph1.62-dev libboost-graph-parallel1.62-dev libboost-iostreams1.62-dev libboost-locale1.62-dev libboost-log1.62-dev libboost-math1.62-dev libboost-mpi1.62-dev libboost-mpi-python1.62-dev libboost-program-options1.62-dev libboost-python1.62-dev libboost-random1.62-dev libboost-regex1.62-dev libboost-serialization1.62-dev libboost-signals1.62-dev libboost-system1.62-dev libboost-test1.62-dev libboost-thread1.62-dev libboost-timer1.62-dev libboost-type-erasure1.62-dev libboost-wave1.62-dev libboost1.62-tools-dev libmpfrc++-dev libntl-dev libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev xml-core libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libboost-dev libboost1.62-dev libbsd0 libcroco3 libfile-stripnondeterminism-perl libfilesys-df-perl libglib2.0-0 libicu57 libmagic-mgc libmagic1 libmeryl-dev libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-canu-dummy 0 upgraded, 34 newly installed, 1 to remove and 0 not upgraded. Need to get 23.6 MB of archives. After this operation, 184 MB of additional disk space will be used. Get:1 copy:/<>/resolver-aQlrDx/apt_archive ./ sbuild-build-depends-canu-dummy 0.invalid.0 [804 B] Get:2 http://ftpmaster.internal/ubuntu artful/main ppc64el groff-base ppc64el 1.22.3-9 [1361 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main ppc64el libbsd0 ppc64el 0.8.3-1 [48.2 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main ppc64el bsdmainutils ppc64el 9.0.12ubuntu1 [179 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main ppc64el libpipeline1 ppc64el 1.4.1-2 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main ppc64el man-db ppc64el 2.7.6.1-2 [890 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main ppc64el libmagic-mgc ppc64el 1:5.30-1 [181 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main ppc64el libmagic1 ppc64el 1:5.30-1 [71.8 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main ppc64el file ppc64el 1:5.30-1 [22.5 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main ppc64el gettext-base ppc64el 0.19.8.1-2ubuntu1 [48.1 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libglib2.0-0 ppc64el 2.53.2-1 [1073 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main ppc64el libicu57 ppc64el 57.1-6 [7785 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-2.2ubuntu1 [609 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main ppc64el libsigsegv2 ppc64el 2.10-5 [14.2 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main ppc64el m4 ppc64el 1.4.18-1 [202 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main ppc64el autoconf all 2.69-10 [321 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main ppc64el autotools-dev all 20161112.1 [39.5 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main ppc64el automake all 1:1.15-6ubuntu1 [509 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main ppc64el autopoint all 0.19.8.1-2ubuntu1 [411 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main ppc64el libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main ppc64el dh-autoreconf all 14 [15.5 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main ppc64el libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el libfile-stripnondeterminism-perl all 0.035-1 [13.2 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu artful-proposed/main ppc64el dh-strip-nondeterminism all 0.035-1 [5016 B] Get:26 http://ftpmaster.internal/ubuntu artful/main ppc64el libcroco3 ppc64el 0.6.11-3 [74.4 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main ppc64el gettext ppc64el 0.19.8.1-2ubuntu1 [1111 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main ppc64el po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main ppc64el debhelper all 10.4ubuntu3 [876 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main ppc64el libboost1.62-dev ppc64el 1.62.0+dfsg-4build2 [7030 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main ppc64el libboost-dev ppc64el 1.62.0.1 [3072 B] Get:33 http://ftpmaster.internal/ubuntu artful/main ppc64el libfilesys-df-perl ppc64el 0.92-6build1 [12.1 kB] Get:34 http://ftpmaster.internal/ubuntu artful/universe ppc64el libmeryl-dev ppc64el 0~20150903+r2013-3 [60.1 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.6 MB in 0s (27.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12359 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12350 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_ppc64el.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../01-libbsd0_0.8.3-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.8.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12ubuntu1_ppc64el.deb ... Unpacking bsdmainutils (9.0.12ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../03-libpipeline1_1.4.1-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_ppc64el.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.30-1_ppc64el.deb ... Unpacking libmagic-mgc (1:5.30-1) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../06-libmagic1_1%3a5.30-1_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.30-1) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.30-1_ppc64el.deb ... Unpacking file (1:5.30-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.19.8.1-2ubuntu1_ppc64el.deb ... Unpacking gettext-base (0.19.8.1-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../09-libglib2.0-0_2.53.2-1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.53.2-1) ... Selecting previously unselected package libicu57:ppc64el. Preparing to unpack .../10-libicu57_57.1-6_ppc64el.deb ... Unpacking libicu57:ppc64el (57.1-6) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../11-libxml2_2.9.4+dfsg1-2.2ubuntu1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.4+dfsg1-2.2ubuntu1) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../12-libsigsegv2_2.10-5_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-1_ppc64el.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... 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Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_0.035-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.035-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../22-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_0.035-1_all.deb ... Unpacking dh-strip-nondeterminism (0.035-1) ... Selecting previously unselected package libcroco3:ppc64el. Preparing to unpack .../24-libcroco3_0.6.11-3_ppc64el.deb ... Unpacking libcroco3:ppc64el (0.6.11-3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-2ubuntu1_ppc64el.deb ... Unpacking gettext (0.19.8.1-2ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_10.4ubuntu3_all.deb ... Unpacking debhelper (10.4ubuntu3) ... Selecting previously unselected package libboost1.62-dev:ppc64el. Preparing to unpack .../29-libboost1.62-dev_1.62.0+dfsg-4build2_ppc64el.deb ... Unpacking libboost1.62-dev:ppc64el (1.62.0+dfsg-4build2) ... Selecting previously unselected package libboost-dev:ppc64el. Preparing to unpack .../30-libboost-dev_1.62.0.1_ppc64el.deb ... Unpacking libboost-dev:ppc64el (1.62.0.1) ... Selecting previously unselected package libfilesys-df-perl. Preparing to unpack .../31-libfilesys-df-perl_0.92-6build1_ppc64el.deb ... Unpacking libfilesys-df-perl (0.92-6build1) ... Selecting previously unselected package libmeryl-dev. Preparing to unpack .../32-libmeryl-dev_0~20150903+r2013-3_ppc64el.deb ... Unpacking libmeryl-dev (0~20150903+r2013-3) ... Selecting previously unselected package sbuild-build-depends-canu-dummy. Preparing to unpack .../33-sbuild-build-depends-canu-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-canu-dummy (0.invalid.0) ... Setting up libmeryl-dev (0~20150903+r2013-3) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libboost1.62-dev:ppc64el (1.62.0+dfsg-4build2) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:ppc64el (2.10-5) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:ppc64el (2.53.2-1) ... No schema files found: doing nothing. Setting up libfilesys-df-perl (0.92-6build1) ... Setting up gettext-base (0.19.8.1-2ubuntu1) ... Setting up libpipeline1:ppc64el (1.4.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libicu57:ppc64el (57.1-6) ... Setting up libbsd0:ppc64el (0.8.3-1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-2.2ubuntu1) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:ppc64el (1:5.30-1) ... Setting up libcroco3:ppc64el (0.6.11-3) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libboost-dev:ppc64el (1.62.0.1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.035-1) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.035-1) ... Setting up debhelper (10.4ubuntu3) ... Setting up sbuild-build-depends-canu-dummy (0.invalid.0) ... (Reading database ... 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Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-81-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.28-6ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.3.0-19ubuntu1 gcc-6_6.3.0-19ubuntu1 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.3.0-19ubuntu1 libstdc++6_7.1.0-7ubuntu1 linux-libc-dev_4.11.0-8.13 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.4.6 apt-transport-https_1.4.6 autoconf_2.69-10 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu99 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.28-6ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-2ubuntu1 cpp-6_6.3.0-19ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.60ubuntu1 debhelper_10.4ubuntu3 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.035-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2ubuntu2 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20161106-2 g++_4:6.3.0-2ubuntu1 g++-6_6.3.0-19ubuntu1 gcc_4:6.3.0-2ubuntu1 gcc-6_6.3.0-19ubuntu1 gcc-6-base_6.3.0-19ubuntu1 gcc-7-base_7.1.0-7ubuntu1 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 gpgv_2.1.15-1ubuntu7 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.48 init-system-helpers_1.48 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu8 libapt-pkg5.0_1.4.6 libarchive-zip-perl_1.59-1 libasan3_6.3.0-19ubuntu1 libasn1-8-heimdal_7.1.0+dfsg-13 libassuan0_2.4.3-2 libatomic1_7.1.0-7ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.6.6-1ubuntu2 libaudit1_1:2.6.6-1ubuntu2 libblkid1_2.29-1ubuntu3 libboost-dev_1.62.0.1 libboost1.62-dev_1.62.0+dfsg-4build2 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-9ubuntu2 libc-dev-bin_2.24-9ubuntu2 libc6_2.24-9ubuntu2 libc6-dev_2.24-9ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-7ubuntu1 libcomerr2_1.43.4-2 libcroco3_0.6.11-3 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.52.1-5ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu2 libdpkg-perl_1.18.24ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu3 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-1 libfilesys-df-perl_0.92-6build1 libgcc-6-dev_6.3.0-19ubuntu1 libgcc1_1:7.1.0-7ubuntu1 libgcrypt20_1.7.7-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.2-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-6ubuntu1 libgomp1_7.1.0-7ubuntu1 libgpg-error0_1.26-2 libgssapi-krb5-2_1.15-2 libgssapi3-heimdal_7.1.0+dfsg-13 libhcrypto4-heimdal_7.1.0+dfsg-13 libheimbase1-heimdal_7.1.0+dfsg-13 libheimntlm0-heimdal_7.1.0+dfsg-13 libhogweed4_3.3-1 libhx509-5-heimdal_7.1.0+dfsg-13 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.0+snapshot20161117-6ubuntu1 libisl15_0.18-1 libitm1_7.1.0-7ubuntu1 libk5crypto3_1.15-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.1.0+dfsg-13 libkrb5-3_1.15-2 libkrb5support0_1.15-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-5ubuntu1 libldap-common_2.4.44+dfsg-5ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmeryl-dev_0~20150903+r2013-3 libmount1_2.29-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-3 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu May 18 05:59:52 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./canu_1.5+dfsg-1.dsc dpkg-source: info: extracting canu in canu-1.5+dfsg dpkg-source: info: unpacking canu_1.5+dfsg.orig.tar.gz dpkg-source: info: unpacking canu_1.5+dfsg-1.debian.tar.xz dpkg-source: info: applying external-deps.patch dpkg-source: info: applying relative-paths.patch dpkg-source: info: applying use-debian-mhap-at-runtime.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<>/canu-1.5+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>/canu-1.5+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package canu dpkg-buildpackage: info: source version 1.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build canu-1.5+dfsg dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --parallel --sourcedirectory=src/ dh_testdir -O--parallel -O--sourcedirectory=src/ dh_auto_clean -O--parallel -O--sourcedirectory=src/ make -j4 clean make[1]: Entering directory '/<>/canu-1.5+dfsg/src' Building for 'Linux' '4.4.0-81-generic' as 'ppc64le' into '/<>/canu-1.5+dfsg/Linux-ppc64le/{bin,obj}' CC cc CXX g++ rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/libcanu.a /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_global.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_decodeRange.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_fasta.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_fileIO.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_reverseComplement.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_stackTrace.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_alloc.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/bitEncodings.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/bitPackedFile.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/bitPackedArray.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/dnaAlphabets.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/hexDump.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/md5.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/mt19937ar.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/readBuffer.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/speedCounter.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/sweatShop.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/timeAndSize.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/kMer.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/falcon_sense/libfalcon/falcon.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/gkStore.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/gkStoreEncode.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovOverlap.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStore.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStoreWriter.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStoreFilter.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStoreFile.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStoreHistogram.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/tgStore.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/tgTig.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/tgTigSizeAnalysis.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/tgTigMultiAlignDisplay.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/libsnappy/snappy-sinksource.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/libsnappy/snappy-stubs-internal.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/libsnappy/snappy.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libmeryl.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/overlapReadCache.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapErrorAdjustment/analyzeAlignment.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/liboverlap/Binomial_Bound.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/liboverlap/Display_Alignment.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-allocateMoreSpace.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-extend.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-forward.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-reverse.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/overlapInCore/libedlib/edlib.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDalign/NDalign.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDalign/Binomial_Bound.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDalign/NDalgorithm.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDalign/NDalgorithm-reverse.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-addRead.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-appendBases.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-applyAlignment.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-baseCall.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-mergeRefine.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-refine.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-refreshMultiAlign.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abColumn.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abMultiAlign.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/unitigConsensus.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libpbutgcns/Alignment.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDFalcon/dw.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/gfa/gfa.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB-create-from-fasta.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB-create-from-meryl.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB-create-from-sequence.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB-state.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-access.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-dump.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-file.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-mismatch.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-sort.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/atomic.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/backtrace.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/dwarf.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/elf.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/fileline.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/mmap.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/mmapio.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/posix.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/print.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/simple.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/sort.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/state.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/unknown.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/gatekeeperCreate /<>/canu-1.5+dfsg/Linux-ppc64le/obj/gatekeeperCreate/stores/gatekeeperCreate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/gatekeeperDumpFASTQ /<>/canu-1.5+dfsg/Linux-ppc64le/obj/gatekeeperDumpFASTQ/stores/gatekeeperDumpFASTQ.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/gatekeeperDumpMetaData /<>/canu-1.5+dfsg/Linux-ppc64le/obj/gatekeeperDumpMetaData/stores/gatekeeperDumpMetaData.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/gatekeeperPartition /<>/canu-1.5+dfsg/Linux-ppc64le/obj/gatekeeperPartition/stores/gatekeeperPartition.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/ovStoreBuild /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreBuild/stores/ovStoreBuild.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/ovStoreBucketizer /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreBucketizer/stores/ovStoreBucketizer.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/ovStoreSorter /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreSorter/stores/ovStoreSorter.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/ovStoreIndexer /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreIndexer/stores/ovStoreIndexer.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/ovStoreDump /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreDump/stores/ovStoreDump.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/ovStoreStats /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreStats/stores/ovStoreStats.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/tgStoreCompress /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreCompress/stores/tgStoreCompress.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/tgStoreDump /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreDump/stores/tgStoreDump.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreDump/stores/tgTigSizeAnalysis.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/tgStoreLoad /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreLoad/stores/tgStoreLoad.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/tgStoreFilter /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreFilter/stores/tgStoreFilter.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/tgStoreCoverageStat /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreCoverageStat/stores/tgStoreCoverageStat.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/tgTigDisplay /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgTigDisplay/stores/tgTigDisplay.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/libleaff.a /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/fastaFile.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/fastaStdin.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/fastqFile.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/fastqStdin.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/gkStoreFile.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/merStream.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/seqCache.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/seqFactory.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/seqStore.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/seqStream.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/sffFile.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/leaff /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-blocks.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-duplicates.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-gc.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-partition.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-simulate.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-statistics.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/meryl /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-args.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-binaryOp.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-build.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-dump.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-estimate.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-merge.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-unaryOp.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/maskMers /<>/canu-1.5+dfsg/Linux-ppc64le/obj/maskMers/meryl/maskMers.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/simple /<>/canu-1.5+dfsg/Linux-ppc64le/obj/simple/meryl/simple.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/estimate-mer-threshold /<>/canu-1.5+dfsg/Linux-ppc64le/obj/estimate-mer-threshold/meryl/estimate-mer-threshold.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/existDB /<>/canu-1.5+dfsg/Linux-ppc64le/obj/existDB/meryl/existDB.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/positionDB /<>/canu-1.5+dfsg/Linux-ppc64le/obj/positionDB/meryl/positionDB.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/merTrim /<>/canu-1.5+dfsg/Linux-ppc64le/obj/merTrim/merTrim/merTrim.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/overlapInCore /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore-Build_Hash_Index.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore-Find_Overlaps.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore-Output.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore-Process_Overlaps.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore-Process_String_Overlaps.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/overlapInCorePartition /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCorePartition/overlapInCore/overlapInCorePartition.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/overlapConvert /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapConvert/overlapInCore/overlapConvert.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/overlapImport /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapImport/overlapInCore/overlapImport.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/overlapPair /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapPair/overlapInCore/overlapPair.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/prefixEditDistance-matchLimitGenerate /<>/canu-1.5+dfsg/Linux-ppc64le/obj/prefixEditDistance-matchLimitGenerate/overlapInCore/liboverlap/prefixEditDistance-matchLimitGenerate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/mhapConvert /<>/canu-1.5+dfsg/Linux-ppc64le/obj/mhapConvert/mhap/mhapConvert.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/mmapConvert /<>/canu-1.5+dfsg/Linux-ppc64le/obj/mmapConvert/minimap/mmapConvert.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/filterCorrectionOverlaps /<>/canu-1.5+dfsg/Linux-ppc64le/obj/filterCorrectionOverlaps/correction/filterCorrectionOverlaps.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/generateCorrectionLayouts /<>/canu-1.5+dfsg/Linux-ppc64le/obj/generateCorrectionLayouts/correction/generateCorrectionLayouts.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/generateCorrectionLayouts/utgcns/stashContains.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/generateCorrectionLayouts/falcon_sense/outputFalcon.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/readConsensus /<>/canu-1.5+dfsg/Linux-ppc64le/obj/readConsensus/correction/readConsensus.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/errorEstimate /<>/canu-1.5+dfsg/Linux-ppc64le/obj/errorEstimate/correction/errorEstimate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/createFalconSenseInputs /<>/canu-1.5+dfsg/Linux-ppc64le/obj/createFalconSenseInputs/falcon_sense/createFalconSenseInputs.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/createFalconSenseInputs/falcon_sense/outputFalcon.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/falcon_sense /<>/canu-1.5+dfsg/Linux-ppc64le/obj/falcon_sense/falcon_sense/falcon_sense.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/trimReads /<>/canu-1.5+dfsg/Linux-ppc64le/obj/trimReads/overlapBasedTrimming/trimReads.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/trimReads/overlapBasedTrimming/trimReads-bestEdge.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/trimReads/overlapBasedTrimming/trimReads-largestCovered.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/trimReads/overlapBasedTrimming/trimReads-quality.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/splitReads /<>/canu-1.5+dfsg/Linux-ppc64le/obj/splitReads/overlapBasedTrimming/splitReads.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/splitReads/overlapBasedTrimming/splitReads-workUnit.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/splitReads/overlapBasedTrimming/splitReads-subReads.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/splitReads/overlapBasedTrimming/splitReads-trimBad.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/splitReads/overlapBasedTrimming/adjustNormal.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/splitReads/overlapBasedTrimming/adjustFlipped.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/findErrors /<>/canu-1.5+dfsg/Linux-ppc64le/obj/findErrors/overlapErrorAdjustment/findErrors.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/findErrors/overlapErrorAdjustment/findErrors-Analyze_Alignment.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/findErrors/overlapErrorAdjustment/findErrors-Output.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/findErrors/overlapErrorAdjustment/findErrors-Prefix_Edit_Distance.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/findErrors/overlapErrorAdjustment/findErrors-Process_Olap.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/findErrors/overlapErrorAdjustment/findErrors-Read_Frags.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/findErrors/overlapErrorAdjustment/findErrors-Read_Olaps.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/findErrors-Dump /<>/canu-1.5+dfsg/Linux-ppc64le/obj/findErrors-Dump/overlapErrorAdjustment/findErrors-Dump.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/correctOverlaps /<>/canu-1.5+dfsg/Linux-ppc64le/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Correct_Frags.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Read_Olaps.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Redo_Olaps.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Prefix_Edit_Distance.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/bogart /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/bogart.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_AssemblyGraph.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_BestOverlapGraph.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_ChunkGraph.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_CreateUnitigs.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_Instrumentation.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_Logging.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_MarkRepeatReads.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_MergeOrphans.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_Outputs.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_OverlapCache.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_PlaceContains.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_PlaceReadUsingOverlaps.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_PopulateUnitig.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_PromoteToSingleton.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_ReadInfo.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_SetParentAndHang.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_SplitDiscontinuous.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_TigGraph.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_TigVector.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_Unitig.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_Unitig_AddRead.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogart/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/bogus /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogus/bogus/bogus.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/bogus/bogus/bogusUtil.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/erateEstimate /<>/canu-1.5+dfsg/Linux-ppc64le/obj/erateEstimate/erateEstimate/erateEstimate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/utgcns /<>/canu-1.5+dfsg/Linux-ppc64le/obj/utgcns/utgcns/utgcns.[doP] /<>/canu-1.5+dfsg/Linux-ppc64le/obj/utgcns/utgcns/stashContains.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/alignGFA /<>/canu-1.5+dfsg/Linux-ppc64le/obj/alignGFA/gfa/alignGFA.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/fastqAnalyze /<>/canu-1.5+dfsg/Linux-ppc64le/obj/fastqAnalyze/fastq-utilities/fastqAnalyze.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/fastqSample /<>/canu-1.5+dfsg/Linux-ppc64le/obj/fastqSample/fastq-utilities/fastqSample.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/fastqSimulate /<>/canu-1.5+dfsg/Linux-ppc64le/obj/fastqSimulate/fastq-utilities/fastqSimulate.[doP] rm -f /<>/canu-1.5+dfsg/Linux-ppc64le/bin/fastqSimulate-sort /<>/canu-1.5+dfsg/Linux-ppc64le/obj/fastqSimulate-sort/fastq-utilities/fastqSimulate-sort.[doP] make[1]: Leaving directory '/<>/canu-1.5+dfsg/src' dh_clean -O--parallel -O--sourcedirectory=src/ debian/rules build-arch dh build-arch --parallel --sourcedirectory=src/ dh_testdir -a -O--parallel -O--sourcedirectory=src/ dh_update_autotools_config -a -O--parallel -O--sourcedirectory=src/ dh_auto_configure -a -O--parallel -O--sourcedirectory=src/ debian/rules override_dh_auto_build make[1]: Entering directory '/<>/canu-1.5+dfsg' dh_auto_build make -j4 make[2]: Entering directory '/<>/canu-1.5+dfsg/src' Building for 'Linux' '4.4.0-81-generic' as 'ppc64le' into '/<>/canu-1.5+dfsg/Linux-ppc64le/{bin,obj}' CC cc CXX g++ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_decodeRange.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_decodeRange.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_fasta.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_fasta.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_fileIO.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_fileIO.C Building snapshot v1.5 g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_reverseComplement.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_reverseComplement.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_stackTrace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_stackTrace.C AS_UTL/AS_UTL_fileIO.C: In function ‘void AS_UTL_symlink(const char*, const char*)’: AS_UTL/AS_UTL_fileIO.C:292:34: warning: ignoring return value of ‘int symlink(const char*, const char*)’, declared with attribute warn_unused_result [-Wunused-result] symlink(pathToFile, pathToLink); ^ AS_UTL/AS_UTL_fileIO.C: In function ‘off_t AS_UTL_sizeOfFile(const char*)’: AS_UTL/AS_UTL_fileIO.C:392:32: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(cmd, FILENAME_MAX, F); // compressed uncompressed ratio uncompressed_name ^ AS_UTL/AS_UTL_fileIO.C:393:32: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(cmd, FILENAME_MAX, F); // 30264891 43640320 30.6% file ^ AS_UTL/AS_UTL_fileIO.C: In function ‘void AS_UTL_loadFileList(char*, std::vector&)’: AS_UTL/AS_UTL_fileIO.C:490:31: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, FILENAME_MAX, F); ^ AS_UTL/AS_UTL_fileIO.C:496:33: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, FILENAME_MAX, F); ^ AS_UTL/AS_UTL_stackTrace.C:77:2: warning: #warning LIBBACKTRACE [-Wcpp] #warning LIBBACKTRACE ^~~~~~~ AS_UTL/AS_UTL_stackTrace.C: In function ‘void AS_UTL_catchCrash(int, siginfo_t*, void*)’: AS_UTL/AS_UTL_stackTrace.C:99:34: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] WRITE_STRING("\nFailed with '"); ^ AS_UTL/AS_UTL_stackTrace.C:100:35: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] WRITE_STRING(strsignal(sig_num)); ^ AS_UTL/AS_UTL_stackTrace.C:101:49: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] WRITE_STRING("'; backtrace (libbacktrace):\n"); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/AS_UTL_alloc.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/AS_UTL_alloc.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/bitEncodings.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/bitEncodings.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/bitPackedFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/bitPackedFile.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/bitPackedArray.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/bitPackedArray.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/dnaAlphabets.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/dnaAlphabets.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/hexDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/hexDump.C AS_UTL/bitPackedFile.C: In constructor ‘bitPackedFile::bitPackedFile(const char*, uint64, bool)’: AS_UTL/bitPackedFile.C:161:41: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, t, sizeof(char) * 16); ^ AS_UTL/bitPackedFile.C:162:38: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &at, sizeof(uint64)); ^ AS_UTL/bitPackedFile.C:163:38: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, &bt, sizeof(uint64)); ^ AS_UTL/bitPackedFile.C: In member function ‘void bitPackedFile::flushDirty()’: AS_UTL/bitPackedFile.C:284:47: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(_file, _bfr, sizeof(uint64) * _bfrmax); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/md5.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/md5.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/mt19937ar.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/mt19937ar.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/readBuffer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/readBuffer.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/speedCounter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/speedCounter.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/sweatShop.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/sweatShop.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/timeAndSize.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/timeAndSize.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/kMer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/kMer.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/falcon_sense/libfalcon/falcon.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon falcon_sense/libfalcon/falcon.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/gkStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/gkStore.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/gkStoreEncode.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/gkStoreEncode.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovOverlap.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovOverlap.C stores/gkStore.C: In static member function ‘static void gkStore::gkStore_clone(char*, char*)’: stores/gkStore.C:1311:30: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd(cPath, FILENAME_MAX); ^ stores/gkStore.C:1315:19: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir(clonePath); ^ stores/gkStore.C:1329:15: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] chdir(cPath); ^ stores/gkStoreEncode.C: In member function ‘uint32 gkRead::gkRead_encode2bit(uint8*&, char*, uint32)’: stores/gkStoreEncode.C:67:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; // The if here is redundant, but pretty. ^~ stores/gkStoreEncode.C:67:52: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; // The if here is redundant, but pretty. ^~~~ stores/gkStoreEncode.C:68:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; // Yes, everything shifts, not a mistake to leave out the braces. ^~ stores/gkStoreEncode.C:68:52: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; // Yes, everything shifts, not a mistake to leave out the braces. ^~~~ stores/gkStoreEncode.C:69:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; ^~ stores/gkStoreEncode.C:69:52: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ if (ii < seqLen) byte |= acgt[seq[ii++]]; byte <<= 2; ^~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStore.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStoreWriter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStoreWriter.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStoreFilter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStoreFilter.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStoreFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStoreFile.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/ovStoreHistogram.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/ovStoreHistogram.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/tgStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/tgStore.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/tgTig.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/tgTig.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/tgTigSizeAnalysis.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/tgTigSizeAnalysis.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/tgTigMultiAlignDisplay.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/tgTigMultiAlignDisplay.C stores/tgTig.C: In member function ‘bool tgTig::loadLayout(FILE*)’: stores/tgTig.C:538:26: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(LINE, LINEmax, F); LINEnum++; ^ stores/tgTig.C:661:28: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(LINE, LINEmax, F); LINEnum++; ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/libsnappy/snappy-sinksource.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/libsnappy/snappy-sinksource.cc g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/libsnappy/snappy-stubs-internal.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/libsnappy/snappy-stubs-internal.cc g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/stores/libsnappy/snappy.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon stores/libsnappy/snappy.cc g++ 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-Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libNDalign/NDalgorithm-reverse.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-addRead.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-addRead.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-appendBases.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-appendBases.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-applyAlignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-applyAlignment.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-baseCall.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-baseCall.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-mergeRefine.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-mergeRefine.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-refine.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-refine.C utgcns/libcns/abAbacus-refine.C:1326:2: warning: #warning SKIPPING ALL REFINEMENTS [-Wcpp] #warning SKIPPING ALL REFINEMENTS ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus-refreshMultiAlign.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus-refreshMultiAlign.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abAbacus.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abAbacus.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abColumn.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abColumn.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/abMultiAlign.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/abMultiAlign.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libcns/unitigConsensus.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libcns/unitigConsensus.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libpbutgcns/Alignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libpbutgcns/Alignment.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libpbutgcns/AlnGraphBoost.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/utgcns/libNDFalcon/dw.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon utgcns/libNDFalcon/dw.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/gfa/gfa.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon gfa/gfa.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB-create-from-fasta.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB-create-from-fasta.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB-create-from-meryl.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB-create-from-meryl.C meryl/libkmer/existDB-create-from-meryl.C:35:2: warning: #warning YUCK RELATIVE INCLUDE OF libmeryl.H [-Wcpp] #warning YUCK RELATIVE INCLUDE OF libmeryl.H ^~~~~~~ meryl/libkmer/existDB-create-from-meryl.C:58:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("F_U32") is different than merSize in meryl database ("F_U32").\n", ^ meryl/libkmer/existDB-create-from-meryl.C:58:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- ERROR: requested merSize ("F_U32") is different than merSize in meryl database ("F_U32").\n", ^ meryl/libkmer/existDB-create-from-meryl.C:85:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- tableSizeInEntries "F_U64"\n", tableSizeInEntries); ^ meryl/libkmer/existDB-create-from-meryl.C:86:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- count range "F_U32"-"F_U32"\n", lo, hi); ^ meryl/libkmer/existDB-create-from-meryl.C:86:69: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- count range "F_U32"-"F_U32"\n", lo, hi); ^ meryl/libkmer/existDB-create-from-meryl.C:135:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "createFromMeryl()-- numberOfMers "F_U64"\n", numberOfMers); ^ meryl/libkmer/existDB-create-from-meryl.C:147:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "F_U64" mers between count of "F_U32" and "F_U32"\n", ^ meryl/libkmer/existDB-create-from-meryl.C:147:63: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "F_U64" mers between count of "F_U32" and "F_U32"\n", ^ meryl/libkmer/existDB-create-from-meryl.C:147:93: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- Found "F_U64" mers between count of "F_U32" and "F_U32"\n", ^ meryl/libkmer/existDB-create-from-meryl.C:166:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- hashTable is "F_U64"MB\n", _hashTableWords >> 17); ^ meryl/libkmer/existDB-create-from-meryl.C:167:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- buckets is "F_U64"MB\n", _bucketsWords >> 17); ^ meryl/libkmer/existDB-create-from-meryl.C:169:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromMeryl()-- counts is "F_U64"MB\n", _countsWords >> 17); ^ meryl/libkmer/existDB-create-from-fasta.C:169:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- hashTable is "F_U64"MB\n", _hashTableWords >> 17); ^ meryl/libkmer/existDB-create-from-fasta.C:170:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- buckets is "F_U64"MB\n", _bucketsWords >> 17); ^ meryl/libkmer/existDB-create-from-fasta.C:172:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromFastA()-- counts is "F_U64"MB\n", _countsWords >> 17); ^ meryl/libkmer/existDB-create-from-fasta.C:272:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-create-from-fasta.C:272:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-create-from-fasta.C:272:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB-create-from-sequence.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB-create-from-sequence.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB-state.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB-state.C meryl/libkmer/existDB-state.C:197:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSizeInBases: "F_U32"\n", _merSizeInBases); ^ meryl/libkmer/existDB-state.C:198:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableBits "F_U32"\n", 2 * _merSizeInBases - _shift1); ^ meryl/libkmer/existDB-state.C:200:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hashTableWords "F_U64" ("F_U64" KB)\n", _hashTableWords, _hashTableWords >> 7); ^ meryl/libkmer/existDB-state.C:200:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hashTableWords "F_U64" ("F_U64" KB)\n", _hashTableWords, _hashTableWords >> 7); ^ meryl/libkmer/existDB-state.C:201:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_bucketsWords "F_U64" ("F_U64" KB)\n", _bucketsWords, _bucketsWords >> 7); ^ meryl/libkmer/existDB-state.C:201:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_bucketsWords "F_U64" ("F_U64" KB)\n", _bucketsWords, _bucketsWords >> 7); ^ meryl/libkmer/existDB-state.C:202:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_countsWords "F_U64" ("F_U64" KB)\n", _countsWords, _countsWords >> 7); ^ meryl/libkmer/existDB-state.C:202:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_countsWords "F_U64" ("F_U64" KB)\n", _countsWords, _countsWords >> 7); ^ meryl/libkmer/existDB-state.C:204:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_shift1: "F_U32"\n", _shift1); ^ meryl/libkmer/existDB-state.C:205:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_shift2 "F_U32"\n", _shift2); ^ meryl/libkmer/existDB-state.C:206:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_mask1 "F_X64"\n", _mask1); ^ meryl/libkmer/existDB-state.C:207:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_mask2 "F_X64"\n", _mask2); ^ meryl/libkmer/existDB-state.C:211:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_hshWidth "F_U32"\n", _hshWidth); ^ meryl/libkmer/existDB-state.C:219:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_chkWidth "F_U32"\n", _chkWidth); ^ meryl/libkmer/existDB-state.C:227:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "_cntWidth "F_U32"\n", _cntWidth); ^ meryl/libkmer/existDB-create-from-sequence.C:158:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- hashTable is "F_U64"MB\n", _hashTableWords >> 17); ^ meryl/libkmer/existDB-create-from-sequence.C:159:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- buckets is "F_U64"MB\n", _bucketsWords >> 17); ^ meryl/libkmer/existDB-create-from-sequence.C:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::createFromSequence()-- counts is "F_U64"MB\n", _countsWords >> 17); ^ meryl/libkmer/existDB-create-from-sequence.C:261:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-create-from-sequence.C:261:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-create-from-sequence.C:261:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Compressed from "F_U64" to "F_U64" ("F_U64" bits)\n", ^ meryl/libkmer/existDB-state.C: In member function ‘bool existDB::loadState(const char*, bool, bool)’: meryl/libkmer/existDB-state.C:108:36: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(cigam, sizeof(char), 16, F); ^ meryl/libkmer/existDB-state.C:152:48: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_merSizeInBases, sizeof(uint32), 1, F); ^ meryl/libkmer/existDB-state.C:153:40: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_shift1, sizeof(uint32), 1, F); ^ meryl/libkmer/existDB-state.C:154:40: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_shift2, sizeof(uint32), 1, F); ^ meryl/libkmer/existDB-state.C:155:39: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_mask1, sizeof(uint64), 1, F); ^ meryl/libkmer/existDB-state.C:156:39: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_mask2, sizeof(uint64), 1, F); ^ meryl/libkmer/existDB-state.C:157:42: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_hshWidth, sizeof(uint32), 1, F); // only valid if _compressedHash ^ meryl/libkmer/existDB-state.C:158:42: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_chkWidth, sizeof(uint32), 1, F); // only valid if _compressedBucket ^ meryl/libkmer/existDB-state.C:159:42: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_cntWidth, sizeof(uint32), 1, F); // only valid if _compressedCounts ^ meryl/libkmer/existDB-state.C:161:48: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_hashTableWords, sizeof(uint64), 1, F); ^ meryl/libkmer/existDB-state.C:162:48: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_bucketsWords, sizeof(uint64), 1, F); ^ meryl/libkmer/existDB-state.C:163:48: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_countsWords, sizeof(uint64), 1, F); ^ meryl/libkmer/existDB-state.C:176:58: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_hashTable, sizeof(uint64), _hashTableWords, F); ^ meryl/libkmer/existDB-state.C:177:58: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_buckets, sizeof(uint64), _bucketsWords, F); ^ meryl/libkmer/existDB-state.C:180:58: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_counts, sizeof(uint64), _countsWords, F); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/existDB.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/existDB.C meryl/libkmer/existDB.C:73:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::existDB()-- Got "F_U32", expected "F_U32"\n", _merSizeInBases, merSize); ^ meryl/libkmer/existDB.C:73:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "existDB::existDB()-- Got "F_U32", expected "F_U32"\n", _merSizeInBases, merSize); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-access.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-access.C In file included from meryl/libkmer/positionDB-access.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-access.C:54:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::get()-- Can't allocate space for more positions, requested "F_U64" uint64's.\n", posnMax); ^ meryl/libkmer/positionDB-access.C:247:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "F_U64" and more than "F_U64"\n", lo, hi); ^ meryl/libkmer/positionDB-access.C:247:80: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtering out kmers less than "F_U64" and more than "F_U64"\n", lo, hi); ^ meryl/libkmer/positionDB-access.C:371:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "F_U64" kmers less than "F_U64"\n", loCount, lo); ^ meryl/libkmer/positionDB-access.C:371:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "F_U64" kmers less than "F_U64"\n", loCount, lo); ^ meryl/libkmer/positionDB-access.C:372:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "F_U64" kmers more than "F_U64"\n", hiCount, hi); ^ meryl/libkmer/positionDB-access.C:372:59: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Filtered "F_U64" kmers more than "F_U64"\n", hiCount, hi); ^ meryl/libkmer/positionDB-access.C:373:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::filter()-- Saved "F_U64" kmers with acceptable count\n", okCount); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-dump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-dump.C In file included from meryl/libkmer/positionDB-dump.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-dump.C:54:16: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "F_U64" "F_U64"-"F_U64"\n", h, st, ed); ^ meryl/libkmer/positionDB-dump.C:54:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "F_U64" "F_U64"-"F_U64"\n", h, st, ed); ^ meryl/libkmer/positionDB-dump.C:54:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "B "F_U64" "F_U64"-"F_U64"\n", h, st, ed); ^ meryl/libkmer/positionDB-dump.C:61:18: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="F_X64" pos="F_U64" siz="F_U64, ^ meryl/libkmer/positionDB-dump.C:61:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="F_X64" pos="F_U64" siz="F_U64, ^ meryl/libkmer/positionDB-dump.C:61:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, "%c chk="F_X64" pos="F_U64" siz="F_U64, ^ meryl/libkmer/positionDB-dump.C:69:22: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(F, " "F_U64, getDecodedValue(_positions, pos, _posnWidth)); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-file.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-file.C In file included from meryl/libkmer/positionDB-file.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-file.C:68:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "safeWrite()-- Wanted to write "F_S64" bytes, wrote "F_S64".\n", (int64)towrite, (int64)written); ^ meryl/libkmer/positionDB-file.C:68:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "safeWrite()-- Wanted to write "F_S64" bytes, wrote "F_S64".\n", (int64)towrite, (int64)written); ^ meryl/libkmer/positionDB-file.C:100:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "safeRead()-- Wanted to read "F_S64" bytes, read "F_S64".\n", (int64)toread, (int64)written); ^ meryl/libkmer/positionDB-file.C:100:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "safeRead()-- Wanted to read "F_S64" bytes, read "F_S64".\n", (int64)toread, (int64)written); ^ meryl/libkmer/positionDB-file.C:304:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSizeInBases: "F_U32"\n", _merSizeInBases); ^ meryl/libkmer/positionDB-file.C:305:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "merSkipInBases: "F_U32"\n", _merSkipInBases); ^ meryl/libkmer/positionDB-file.C:306:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableSizeInBits: "F_U32"\n", _tableSizeInBits); ^ meryl/libkmer/positionDB-file.C:307:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "tableSizeInEntries: "F_U64"\n", _tableSizeInEntries); ^ meryl/libkmer/positionDB-file.C:308:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "hashWidth: "F_U32"\n", _hashWidth); ^ meryl/libkmer/positionDB-file.C:309:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "chckWidth: "F_U32"\n", _chckWidth); ^ meryl/libkmer/positionDB-file.C:310:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "posnWidth: "F_U32"\n", _posnWidth); ^ meryl/libkmer/positionDB-file.C:311:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfMers: "F_U64"\n", _numberOfMers); ^ meryl/libkmer/positionDB-file.C:312:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfPositions: "F_U64"\n", _numberOfPositions); ^ meryl/libkmer/positionDB-file.C:313:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfDistinct: "F_U64"\n", _numberOfDistinct); ^ meryl/libkmer/positionDB-file.C:314:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfUnique: "F_U64"\n", _numberOfUnique); ^ meryl/libkmer/positionDB-file.C:315:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "numberOfEntries: "F_U64"\n", _numberOfEntries); ^ meryl/libkmer/positionDB-file.C:316:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stream, "maximumEntries: "F_U64"\n", _maximumEntries); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-mismatch.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-mismatch.C In file included from meryl/libkmer/positionDB-mismatch.C:26:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-mismatch.C:348:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB::getUpToNMismatches()-- Can't allocate space for initial positions, requested "F_U64" uint64's.\n", posnMax); ^ meryl/libkmer/positionDB-file.C: In member function ‘void positionDB::saveState(const char*)’: meryl/libkmer/positionDB-file.C:144:39: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(F, magic, sizeof(char) * 16); ^ meryl/libkmer/positionDB-file.C:146:39: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(F, faild, sizeof(char) * 16); ^ meryl/libkmer/positionDB-file.C:202:39: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] write(F, magic, sizeof(char) * 16); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB-sort.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB-sort.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/meryl/libkmer/positionDB.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon meryl/libkmer/positionDB.C In file included from meryl/libkmer/positionDB-sort.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB-sort.C:69:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "F_U64" starts at "F_U64" ends at "F_U64"?\n", b, st, ed); ^ meryl/libkmer/positionDB-sort.C:69:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "F_U64" starts at "F_U64" ends at "F_U64"?\n", b, st, ed); ^ meryl/libkmer/positionDB-sort.C:69:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: Bucket "F_U64" starts at "F_U64" ends at "F_U64"?\n", b, st, ed); ^ meryl/libkmer/positionDB-sort.C:110:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="F_U64" t="F_S64" le="F_U32"\n", b, t, le); ^ meryl/libkmer/positionDB-sort.C:110:55: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="F_U64" t="F_S64" le="F_U32"\n", b, t, le); ^ meryl/libkmer/positionDB-sort.C:110:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: unset posn bucket="F_U64" t="F_S64" le="F_U32"\n", b, t, le); ^ meryl/libkmer/positionDB-sort.C:118:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%4"F_U32P"] chck="F_X64" posn="F_U64"\n", t, _sortedChck[t], _sortedPosn[t]); ^ meryl/libkmer/positionDB-sort.C:118:33: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%4"F_U32P"] chck="F_X64" posn="F_U64"\n", t, _sortedChck[t], _sortedPosn[t]); ^ meryl/libkmer/positionDB-sort.C:118:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%4"F_U32P"] chck="F_X64" posn="F_U64"\n", t, _sortedChck[t], _sortedPosn[t]); ^ meryl/libkmer/positionDB-sort.C:142:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-sort.C:142:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-sort.C:142:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-sort.C:142:65: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ meryl/libkmer/positionDB-sort.C:142:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "ERROR: bucket="F_U64" t="F_U32" le="F_U32": "F_X64" > "F_X64"\n", ^ In file included from meryl/libkmer/positionDB.C:38:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/libkmer/positionDB.C:107:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:107:103: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer size is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:113:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:113:103: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but mer skip is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:119:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:119:119: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- Tried to read state from '%s', but max number of mismatches is wrong (found "F_U32", wanted "F_U32").\n", ^ meryl/libkmer/positionDB.C:188:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " sm = "F_U64"\n", sm); ^ meryl/libkmer/positionDB.C:189:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " lg = "F_U64"\n", lg); ^ meryl/libkmer/positionDB.C:190:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " merSize = "F_U32" bits\n", 2 * merSize); ^ meryl/libkmer/positionDB.C:191:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " approxMers = "F_U64" mers\n", approxMers); ^ meryl/libkmer/positionDB.C:192:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " posnWidth = "F_U64" bits\n", posnWidth); ^ meryl/libkmer/positionDB.C:203:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "F_U64" "F_U32"-mers (posnW="F_U64").\n", ^ meryl/libkmer/positionDB.C:203:73: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "F_U64" "F_U32"-mers (posnW="F_U64").\n", ^ meryl/libkmer/positionDB.C:203:81: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "potential configurations for approximately "F_U64" "F_U32"-mers (posnW="F_U64").\n", ^ meryl/libkmer/positionDB.C:278:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:36: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:47: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:77: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:278:102: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "tblBits="F_U32" s1="F_U32" s2="F_U32" -- merSize="F_U32" bits + posnWidth="F_U64" bits (est "F_U64" mers) FINAL\n", ^ meryl/libkmer/positionDB.C:387:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- bktAlloc = new uint64 ["F_U64"]\n", _tableSizeInEntries / 2 + 4); ^ meryl/libkmer/positionDB.C:409:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated bucket size counting space with total size "F_U64" KB\n", _tableSizeInEntries >> 8); ^ meryl/libkmer/positionDB.C:453:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Found "F_U64" mers (max position = "F_U64")\n", _numberOfMers, _numberOfPositions); ^ meryl/libkmer/positionDB.C:453:38: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Found "F_U64" mers (max position = "F_U64")\n", _numberOfMers, _numberOfPositions); ^ meryl/libkmer/positionDB.C:491:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for buckets ("F_U64" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); ^ meryl/libkmer/positionDB.C:491:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for buckets ("F_U64" 64-bit words)\n", bucketsSpace >> 7, bucketsSpace); ^ meryl/libkmer/positionDB.C:496:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _countingBuckets = new uint64 ["F_U64"]\n", bucketsSpace); ^ meryl/libkmer/positionDB.C:614:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Sorting and repacking buckets ("F_U64" buckets).\n", _tableSizeInEntries); ^ meryl/libkmer/positionDB.C:629:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "F_U64" non-unique position list entries ("F_U64" maximum count)\n", ^ meryl/libkmer/positionDB.C:629:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "F_U64" non-unique position list entries ("F_U64" maximum count)\n", ^ meryl/libkmer/positionDB.C:698:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for hash table ("F_U64" 64-bit words)\n", hs >> 7, hs); ^ meryl/libkmer/positionDB.C:698:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for hash table ("F_U64" 64-bit words)\n", hs >> 7, hs); ^ meryl/libkmer/positionDB.C:704:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _hashTable_BP = new uint64 ["F_U64"]\n", hs); ^ meryl/libkmer/positionDB.C:723:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Reusing bucket space; Have: "F_U64" Need: "F_U64" (64-bit words)\n", bucketsSpace, bs); ^ meryl/libkmer/positionDB.C:723:62: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Reusing bucket space; Have: "F_U64" Need: "F_U64" (64-bit words)\n", bucketsSpace, bs); ^ meryl/libkmer/positionDB.C:730:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for buckets ("F_U64" 64-bit words)\n", bs >> 7, bs); ^ meryl/libkmer/positionDB.C:730:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for buckets ("F_U64" 64-bit words)\n", bs >> 7, bs); ^ meryl/libkmer/positionDB.C:735:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _buckets = new uint64 ["F_U64"]\n", bs); ^ meryl/libkmer/positionDB.C:741:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for positions ("F_U64" 64-bit words)\n", ps >> 7, ps); ^ meryl/libkmer/positionDB.C:741:42: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Allocated "F_U64"KB for positions ("F_U64" 64-bit words)\n", ps >> 7, ps); ^ meryl/libkmer/positionDB.C:746:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- _positions = new uint64 ["F_U64"\n", ps); ^ meryl/libkmer/positionDB.C:756:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Transferring to final structure ("F_U64" buckets).\n", _tableSizeInEntries); ^ meryl/libkmer/positionDB.C:939:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- ERROR: Got position "F_U64", but only "F_U64" available!\n", ^ meryl/libkmer/positionDB.C:939:74: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "positionDB()-- ERROR: Got position "F_U64", but only "F_U64" available!\n", ^ meryl/libkmer/positionDB.C:994:13: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "F_U64" non-unique position list entries ("F_U64" maximum count)\n", ^ meryl/libkmer/positionDB.C:994:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] " Need "F_U64" non-unique position list entries ("F_U64" maximum count)\n", ^ meryl/libkmer/positionDB.C:1016:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Rebuilding the hash table, from "F_U32" bits wide to "F_U32" bits wide.\n", ^ meryl/libkmer/positionDB.C:1016:68: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Rebuilding the hash table, from "F_U32" bits wide to "F_U32" bits wide.\n", ^ meryl/libkmer/positionDB.C:1051:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loading "F_U64" mercounts.\n", counts->numberOfDistinctMers()); ^ meryl/libkmer/positionDB.C:1074:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loaded "F_U64" mercounts; largest is "F_U64".\n", countsLoaded, largestMerylCount); ^ meryl/libkmer/positionDB.C:1074:41: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Loaded "F_U64" mercounts; largest is "F_U64".\n", countsLoaded, largestMerylCount); ^ meryl/libkmer/positionDB.C:1078:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Compress sizes from "F_U32" bits to "F_U32" bits.\n", ^ meryl/libkmer/positionDB.C:1078:56: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, " Compress sizes from "F_U32" bits to "F_U32" bits.\n", ^ cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/atomic.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/atomic.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/backtrace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/backtrace.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/dwarf.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/dwarf.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/elf.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/elf.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/fileline.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/fileline.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/mmap.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/mmap.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/mmapio.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/mmapio.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/posix.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/posix.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/print.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/print.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/simple.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/simple.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/sort.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/sort.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/state.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/state.c cc -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libcanu.a/AS_UTL/libbacktrace/unknown.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -Imeryl/libleaff -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap -Ifalcon_sense/libfalcon AS_UTL/libbacktrace/unknown.c g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/gatekeeperCreate/stores/gatekeeperCreate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/gatekeeperCreate.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/gatekeeperDumpFASTQ/stores/gatekeeperDumpFASTQ.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -Istores -IAS_UTL -IoverlapBasedTrimming stores/gatekeeperDumpFASTQ.C stores/gatekeeperCreate.C: In function ‘uint32 loadFASTA(char*, char*, char*, uint32&, char*, compressedFileReader*, FILE*, uint32&)’: stores/gatekeeperCreate.C:96:40: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, AS_MAX_READLEN+1, F->file()); nLines++; ^ stores/gatekeeperCreate.C:148:42: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, AS_MAX_READLEN+1, F->file()); nLines++; ^ stores/gatekeeperCreate.C: In function ‘uint32 loadFASTQ(char*, char*, char*, uint32&, char*, compressedFileReader*, FILE*, uint32&)’: stores/gatekeeperCreate.C:206:40: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(S, AS_MAX_READLEN+1, F->file()); ^ stores/gatekeeperCreate.C:219:42: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(overflow, 1048576, F->file()); ^ stores/gatekeeperCreate.C:272:40: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(Q, AS_MAX_READLEN+1, F->file()); ^ stores/gatekeeperCreate.C:273:40: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(Q, AS_MAX_READLEN+1, F->file()); ^ stores/gatekeeperCreate.C:285:42: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(overflow, 1048576, F->file()); ^ stores/gatekeeperCreate.C: In function ‘void loadReads(gkStore*, gkLibrary*, uint32, uint32, FILE*, FILE*, FILE*, char*, uint32&, uint32&, uint64&, uint32&, uint64&)’: stores/gatekeeperCreate.C:391:40: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, AS_MAX_READLEN+1, F->file()); ^ stores/gatekeeperCreate.C:462:44: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, AS_MAX_READLEN+1, F->file()); lineNumber++; ^ stores/gatekeeperDumpFASTQ.C: In function ‘int main(int, char**)’: stores/gatekeeperDumpFASTQ.C:402:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wparentheses] if (dumpFASTA) // Dear GCC: I'm NOT ambiguous ^ stores/gatekeeperDumpFASTQ.C:412:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wparentheses] if (dumpFASTQ) // Dear GCC: I'm NOT ambiguous ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/gatekeeperDumpMetaData/stores/gatekeeperDumpMetaData.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/gatekeeperDumpMetaData.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/gatekeeperPartition/stores/gatekeeperPartition.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/gatekeeperPartition.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreBuild/stores/ovStoreBuild.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreBuild.C stores/ovStoreBuild.C:525:2: warning: #warning not checking overlap IDs for validity [-Wcpp] #warning not checking overlap IDs for validity ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreBucketizer/stores/ovStoreBucketizer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreBucketizer.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreSorter/stores/ovStoreSorter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreSorter.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreIndexer/stores/ovStoreIndexer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreIndexer.C stores/ovStoreBucketizer.C:270:2: warning: #warning not reporting fate [-Wcpp] #warning not reporting fate ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreDump/stores/ovStoreDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreDump.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/ovStoreStats/stores/ovStoreStats.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/ovStoreStats.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreCompress/stores/tgStoreCompress.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreCompress.C stores/ovStoreDump.C: In constructor ‘bogartStatus::bogartStatus(const char*, uint32)’: stores/ovStoreDump.C:148:28: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, E); ^ stores/ovStoreDump.C:164:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, E); ^ stores/ovStoreDump.C:169:28: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, S); ^ stores/ovStoreDump.C:185:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, S); ^ stores/ovStoreDump.C:190:28: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, G); ^ stores/ovStoreDump.C:206:30: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(N, FILENAME_MAX, G); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreDump/stores/tgStoreDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreDump.C stores/tgStoreDump.C:696:2: warning: #warning replace this with genericStatistics [-Wcpp] #warning replace this with genericStatistics ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreDump/stores/tgTigSizeAnalysis.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgTigSizeAnalysis.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreLoad/stores/tgStoreLoad.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreLoad.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreFilter/stores/tgStoreFilter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreFilter.C stores/tgStoreFilter.C:541:2: warning: #warning NOT setSuggestUnique [-Wcpp] #warning NOT setSuggestUnique ^~~~~~~ stores/tgStoreFilter.C:547:2: warning: #warning NOT setSuggestUnique [-Wcpp] #warning NOT setSuggestUnique ^~~~~~~ stores/tgStoreFilter.C:553:2: warning: #warning NOT setSuggestUnique [-Wcpp] #warning NOT setSuggestUnique ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgStoreCoverageStat/stores/tgStoreCoverageStat.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgStoreCoverageStat.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/tgTigDisplay/stores/tgTigDisplay.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL stores/tgTigDisplay.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/fastaFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/fastaFile.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/fastaStdin.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/fastaStdin.C meryl/libleaff/fastaFile.C: In member function ‘void fastaFile::loadIndex(char*)’: meryl/libleaff/fastaFile.C:381:49: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(fastaFileHeader), 1, I); ^ meryl/libleaff/fastaFile.C:403:71: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_index, sizeof(fastaFileIndex), _header._numberOfSequences, I); ^ meryl/libleaff/fastaFile.C:404:71: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_names, sizeof(char), _header._namesLength, I); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/fastqFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/fastqFile.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/fastqStdin.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/fastqStdin.C meryl/libleaff/fastqFile.C: In member function ‘void fastqFile::loadIndex(char*)’: meryl/libleaff/fastqFile.C:378:49: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(fastqFileHeader), 1, I); ^ meryl/libleaff/fastqFile.C:398:71: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_index, sizeof(fastqFileIndex), _header._numberOfSequences, I); ^ meryl/libleaff/fastqFile.C:399:71: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_names, sizeof(char), _header._namesLength, I); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/gkStoreFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/gkStoreFile.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/merStream.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/merStream.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/seqCache.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/seqCache.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/seqFactory.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/seqFactory.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/seqStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/seqStore.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/seqStream.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/seqStream.C meryl/libleaff/seqStore.C: In constructor ‘seqStore::seqStore(const char*)’: meryl/libleaff/seqStore.C:50:50: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(seqStoreHeader), 1, F); ^ meryl/libleaff/seqStore.C: In member function ‘virtual seqFile* seqStore::openFile(const char*)’: meryl/libleaff/seqStore.C:102:39: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&magic1, sizeof(uint64), 1, F); ^ meryl/libleaff/seqStore.C:103:39: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&magic2, sizeof(uint64), 1, F); ^ meryl/libleaff/seqStore.C: In member function ‘void seqStore::loadIndex()’: meryl/libleaff/seqStore.C:347:50: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_header, sizeof(seqStoreHeader), 1, F); ^ meryl/libleaff/seqStore.C:358:73: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _index, sizeof(seqStoreIndex), _header._numberOfSequences, F); ^ meryl/libleaff/seqStore.C:372:70: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _block, sizeof(seqStoreBlock), _header._numberOfBlocks, F); ^ meryl/libleaff/seqStore.C:376:67: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _names, sizeof(char), _header._namesLength, F); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/libleaff.a/meryl/libleaff/sffFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores meryl/libleaff/sffFile.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-blocks.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-blocks.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-duplicates.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-duplicates.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-gc.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-gc.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-partition.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-partition.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-simulate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-simulate.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff-statistics.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff-statistics.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/leaff/meryl/leaff.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/leaff.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-args.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-args.C meryl/meryl-args.C: In function ‘char* readString(FILE*)’: meryl/meryl-args.C:79:36: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&len, sizeof(uint32), 1, F); ^ meryl/meryl-args.C:89:37: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(str, sizeof(char), len, F); ^ meryl/meryl-args.C: In constructor ‘merylArgs::merylArgs(const char*)’: meryl/meryl-args.C:557:36: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(magic, sizeof(char), 16, F); ^ meryl/meryl-args.C:565:39: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(this, sizeof(merylArgs), 1, F); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-binaryOp.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-binaryOp.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-build.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-build.C meryl/meryl-build.C:281:2: warning: #warning not submitting prepareBatch to grid [-Wcpp] #warning not submitting prepareBatch to grid ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-dump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-dump.C meryl/meryl-dump.C:95:2: warning: #warning make this a test [-Wcpp] #warning make this a test ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-estimate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-estimate.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-merge.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-merge.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl-unaryOp.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl-unaryOp.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/meryl/meryl/meryl.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/meryl.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/maskMers/meryl/maskMers.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/maskMers.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/simple/meryl/simple.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/simple.C meryl/maskMers.C: In member function ‘void merMaskedSequence::loadMasking(uint32)’: meryl/maskMers.C:159:52: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_numSeq, sizeof(uint32), 1, maskMersFile); ^ meryl/maskMers.C:160:52: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(&_merSize, sizeof(uint32), 1, maskMersFile); ^ meryl/maskMers.C:168:59: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread( _seqLen, sizeof(uint32), _numSeq, maskMersFile); ^ meryl/maskMers.C:183:68: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_masking[i], sizeof(char), _seqLen[i], maskMersFile); ^ meryl/maskMers.C:184:68: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread(_repeatID[i], sizeof(uint32), _seqLen[i], maskMersFile); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/estimate-mer-threshold/meryl/estimate-mer-threshold.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff meryl/estimate-mer-threshold.C meryl/estimate-mer-threshold.C: In function ‘void loadHistogram(FILE*, uint64&, uint64&, uint64&, uint32&, uint32*&)’: meryl/estimate-mer-threshold.C:113:21: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, 1024, HF); ^ meryl/estimate-mer-threshold.C:128:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(L, 1024, HF); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/existDB/meryl/existDB.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff -Imeryl/libkmer meryl/existDB.C meryl/existDB.C:78:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "F_X64" not found : e=%d f=%d g=%d\n", m, ee, ef, eg); ^ meryl/existDB.C:81:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "F_X64" count differs : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); ^ meryl/existDB.C:90:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "mer "F_X64" : e=%u f=%u g=%u (exists=%d)\n", m, ce, cf, cg, ee); ^ meryl/existDB.C:121:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Tried "F_U64", didn't find "F_U64" merStream mers in the existDB.\n", tried, lost); ^ meryl/existDB.C:121:34: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Tried "F_U64", didn't find "F_U64" merStream mers in the existDB.\n", tried, lost); ^ meryl/existDB.C:153:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Found "F_U64" mers in the meryl database.\n", expected); ^ meryl/existDB.C:173:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Expected to find "F_U64" mers, but found "F_U64" instead.\n", ^ meryl/existDB.C:173:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Expected to find "F_U64" mers, but found "F_U64" instead.\n", ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/positionDB/meryl/positionDB.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Imeryl/libleaff -Imeryl/libkmer meryl/positionDB.C In file included from meryl/positionDB.C:34:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ meryl/positionDB.C:75:25: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "F_U64"/"F_U64": Found "F_U64" table entries, and "F_U32" matching positions (", ^ meryl/positionDB.C:75:37: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "F_U64"/"F_U64": Found "F_U64" table entries, and "F_U32" matching positions (", ^ meryl/positionDB.C:75:45: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "F_U64"/"F_U64": Found "F_U64" table entries, and "F_U32" matching positions (", ^ meryl/positionDB.C:75:60: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "%s @ "F_U64"/"F_U64": Found "F_U64" table entries, and "F_U32" matching positions (", ^ meryl/positionDB.C:89:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Found no matches for mer=%s at pos="F_U64"\n", ^ meryl/positionDB.C:122:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:122:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:122:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a F match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:131:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:131:58: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:131:66: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stdout, "Got a R match for mer=%s at "F_U64"/"F_U64" (in mers), numMatches="F_U64"\n", ^ meryl/positionDB.C:276:21: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: merbegin="F_U64" and merend="F_U64" are incompatible.\n", ^ meryl/positionDB.C:276:44: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "ERROR: merbegin="F_U64" and merend="F_U64" are incompatible.\n", ^ meryl/positionDB.C:296:19: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Building table with merSize "F_U32", merSkip "F_U32"\n", mersize, merskip); ^ meryl/positionDB.C:296:54: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "Building table with merSize "F_U32", merSkip "F_U32"\n", mersize, merskip); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/merTrim/merTrim/merTrim.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -Imeryl -Imeryl/libleaff -Imeryl/libkmer merTrim/merTrim.C In file included from merTrim/merTrim.C:52:0: meryl/libkmer/positionDB.H:159:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift1 = "F_U32"\n", _shift1); ^ meryl/libkmer/positionDB.H:160:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "shift2 = "F_U32"\n", _shift2); ^ meryl/libkmer/positionDB.H:161:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "M = "F_X64"\n", m); ^ meryl/libkmer/positionDB.H:162:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "H = "F_X64"\n", h); ^ meryl/libkmer/positionDB.H:163:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "C = "F_X64"\n", c); ^ meryl/libkmer/positionDB.H:164:23: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] fprintf(stderr, "R = "F_X64"\n", r); ^ merTrim/merTrim.C:471:2: warning: #warning HORRIBLY NON OPTIMAL READING OF READS [-Wcpp] #warning HORRIBLY NON OPTIMAL READING OF READS ^~~~~~~ merTrim/merTrim.C:586:2: warning: #warning ASSUMING SANGER QV ENCODING [-Wcpp] #warning ASSUMING SANGER QV ENCODING ^~~~~~~ merTrim/merTrim.C:649:2: warning: #warning BOGUS ERROR RATE USED [-Wcpp] #warning BOGUS ERROR RATE USED ^~~~~~~ merTrim/merTrim.C:2006:2: warning: #warning BOGUS MIN_READ_LENGTH USED [-Wcpp] #warning BOGUS MIN_READ_LENGTH USED ^~~~~~~ merTrim/merTrim.C:2037:2: warning: #warning BOGUS MIN_READ_LENGTH USED [-Wcpp] #warning BOGUS MIN_READ_LENGTH USED ^~~~~~~ merTrim/merTrim.C:2170:2: warning: #warning unfinished verify [-Wcpp] #warning unfinished verify ^~~~~~~ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore.C merTrim/merTrim.C: In member function ‘bool mertrimComputation::initializeFASTQ(mertrimGlobalData*)’: merTrim/merTrim.C:557:37: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] memset(verifyName, 1024, 0); ^ merTrim/merTrim.C:558:37: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] memset(verifySeq, allocLen, 0); // Needed, for verified reads shorter than real reads ^ merTrim/merTrim.C: In member function ‘void mertrimComputation::dump(char*)’: merTrim/merTrim.C:1785:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1795:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1816:28: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1826:28: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1837:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1847:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1857:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1867:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C:1877:26: error: format not a string literal and no format arguments [-Werror=format-security] fprintf(stderr, logLine); ^ merTrim/merTrim.C: In member function ‘bool mertrimComputation::initializeFASTQ(mertrimGlobalData*)’: merTrim/merTrim.C:561:55: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(verifyName, 1024, g->fqVerify->file()); ^ merTrim/merTrim.C:562:55: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(verifySeq, allocLen, g->fqVerify->file()); ^ merTrim/merTrim.C:563:55: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(origQlt, allocLen, g->fqVerify->file()); // qv name line, ignored ^ merTrim/merTrim.C:564:55: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(origQlt, allocLen, g->fqVerify->file()); ^ merTrim/merTrim.C:572:50: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(readName, 1024, g->fqInput->file()); ^ merTrim/merTrim.C:573:50: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(origSeq, allocLen, g->fqInput->file()); ^ merTrim/merTrim.C:574:50: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(origQlt, allocLen, g->fqInput->file()); // qv name line, ignored ^ merTrim/merTrim.C:575:50: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(origQlt, allocLen, g->fqInput->file()); ^ g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore-Build_Hash_Index.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Build_Hash_Index.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore-Output.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Output.C g++ -o /<>/canu-1.5+dfsg/Linux-ppc64le/obj/overlapInCore/overlapInCore/overlapInCore-Find_Overlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/canu-1.5+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -D_GLIBCXX_PARALLEL -pthread -fopenmp -fPIC -Wall -Wextra -Wno-write-strings -Wno-unused -Wno-char-subscripts -Wno-sign-compare -Wformat -g3 -O4 -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -DLIBBACKTRACE -I/<>/canu-1.5+dfsg/src -IAS_UTL -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Find_Overlaps.C cc1plus: some warnings being treated as errors Makefile:640: recipe for target '/<>/canu-1.5+dfsg/Linux-ppc64le/obj/merTrim/merTrim/merTrim.o' failed make[2]: *** [/<>/canu-1.5+dfsg/Linux-ppc64le/obj/merTrim/merTrim/merTrim.o] Error 1 make[2]: *** Waiting for unfinished jobs.... make[2]: Leaving directory '/<>/canu-1.5+dfsg/src' dh_auto_build: make -j4 returned exit code 2 debian/rules:14: recipe for target 'override_dh_auto_build' failed make[1]: *** [override_dh_auto_build] Error 2 make[1]: Leaving directory '/<>/canu-1.5+dfsg' debian/rules:11: recipe for target 'build-arch' failed make: *** [build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 20170622-1222 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 77860 Build-Time: 40 Distribution: artful-proposed Fail-Stage: build Host Architecture: ppc64el Install-Time: 9 Job: canu_1.5+dfsg-1.dsc Machine Architecture: ppc64el Package: canu Package-Time: 51 Source-Version: 1.5+dfsg-1 Space: 77860 Status: attempted Version: 1.5+dfsg-1 -------------------------------------------------------------------------------- Finished at 20170622-1222 Build needed 00:00:51, 77860k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12604587'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12604587/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12604587'] Unmounting chroot for build PACKAGEBUILD-12604587... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12604587'] Removing build PACKAGEBUILD-12604587