RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-012 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 26 Oct 19:50:13 ntpdate[1791]: adjust time server 10.211.37.1 offset 0.000386 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13625736 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-13625736 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13625736 Starting target for build PACKAGEBUILD-13625736 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13625736 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13625736 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13625736 Updating target for build PACKAGEBUILD-13625736 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [78.6 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1069 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [542 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8099 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4788 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [110 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [44.6 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [154 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [83.0 kB] Fetched 15.3 MB in 3s (4571 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'sudo apt autoremove' to remove it. The following packages will be upgraded: apt apt-transport-https base-files binutils binutils-common binutils-x86-64-linux-gnu build-essential coreutils cpp-7 dpkg dpkg-dev g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcilkrts5 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgomp1 libhogweed4 libitm1 liblsan0 libmpx2 libnettle6 libpcre3 libpng16-16 libquadmath0 libseccomp2 libsemanage-common libsemanage1 libstdc++-7-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 linux-libc-dev multiarch-support systemd systemd-sysv 54 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 47.1 MB of archives. After this operation, 318 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 coreutils amd64 8.26-3ubuntu4 [1213 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 dpkg amd64 1.19.0.4ubuntu1 [1145 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6-dev amd64 2.26-0ubuntu2 [2524 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-dev-bin amd64 2.26-0ubuntu2 [69.6 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 linux-libc-dev amd64 4.13.0-16.19 [954 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libitm1 amd64 7.2.0-12ubuntu1 [27.6 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gcc-7-base amd64 7.2.0-12ubuntu1 [18.3 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcc1 amd64 1:7.2.0-12ubuntu1 [39.3 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libmpx2 amd64 7.2.0-12ubuntu1 [11.7 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgomp1 amd64 7.2.0-12ubuntu1 [76.4 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libatomic1 amd64 7.2.0-12ubuntu1 [8954 B] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libasan4 amd64 7.2.0-12ubuntu1 [360 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 liblsan0 amd64 7.2.0-12ubuntu1 [133 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libtsan0 amd64 7.2.0-12ubuntu1 [282 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libubsan0 amd64 7.2.0-12ubuntu1 [126 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcilkrts5 amd64 7.2.0-12ubuntu1 [42.5 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libquadmath0 amd64 7.2.0-12ubuntu1 [132 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 cpp-7 amd64 7.2.0-12ubuntu1 [6728 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcc1-0 amd64 7.2.0-12ubuntu1 [38.7 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 g++-7 amd64 7.2.0-12ubuntu1 [7554 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gcc-7 amd64 7.2.0-12ubuntu1 [7414 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcc-7-dev amd64 7.2.0-12ubuntu1 [2377 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libstdc++-7-dev amd64 7.2.0-12ubuntu1 [1457 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libstdc++6 amd64 7.2.0-12ubuntu1 [405 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libbinutils amd64 2.29.1-6ubuntu1 [502 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils amd64 2.29.1-6ubuntu1 [3344 B] Get:28 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils-common amd64 2.29.1-6ubuntu1 [190 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.29.1-6ubuntu1 [1825 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6 amd64 2.26-0ubuntu2 [2778 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.26-0ubuntu2 [593 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 libudev1 amd64 234-2ubuntu12 [51.7 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libapt-pkg5.0 amd64 1.5.1 [781 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.1.15-1ubuntu8 [186 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 apt amd64 1.5.1 [1121 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.1 [13.2 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd amd64 234-2ubuntu12 [2780 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 libsystemd0 amd64 234-2ubuntu12 [208 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd-sysv amd64 234-2ubuntu12 [10.8 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 libpcre3 amd64 2:8.39-5ubuntu3 [229 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage-common all 2.7-2 [6916 B] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage1 amd64 2.7-2 [84.6 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 libnettle6 amd64 3.3-2 [91.7 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 libhogweed4 amd64 3.3-2 [135 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg amd64 2.1.15-1ubuntu8 [780 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg-agent amd64 2.1.15-1ubuntu8 [255 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 multiarch-support amd64 2.26-0ubuntu2 [6832 B] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcurl3-gnutls amd64 7.55.1-1ubuntu2.1 [193 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 apt-transport-https amd64 1.5.1 [34.7 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 47.1 MB in 1s (36.0 MB/s) (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_amd64.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_amd64.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.4ubuntu1_amd64.deb ... Unpacking dpkg (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Setting up dpkg (1.19.0.4ubuntu1) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... 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Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up libc6-dev:amd64 (2.26-0ubuntu2) ... Setting up libitm1:amd64 (7.2.0-12ubuntu1) ... Setting up apt-transport-https (1.5.1) ... Setting up libbinutils:amd64 (2.29.1-6ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libgcc-7-dev:amd64 (7.2.0-12ubuntu1) ... Setting up libstdc++-7-dev:amd64 (7.2.0-12ubuntu1) ... Setting up binutils-x86-64-linux-gnu (2.29.1-6ubuntu1) ... Setting up binutils (2.29.1-6ubuntu1) ... Setting up gcc-7 (7.2.0-12ubuntu1) ... Setting up g++-7 (7.2.0-12ubuntu1) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13625736 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-13625736 --arch=amd64 --dist=bionic-proposed --nolog -A cassiopee_1.0.5-2build1.dsc Initiating build PACKAGEBUILD-13625736 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:28:18 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-012.buildd +==============================================================================+ | cassiopee 1.0.5-2build1 (amd64) 26 Oct 2017 19:50 | +==============================================================================+ Package: cassiopee Version: 1.0.5-2build1 Source Version: 1.0.5-2build1 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/cassiopee-Mcjbn9/cassiopee-1.0.5' with '<>' I: NOTICE: Log filtering will replace 'build/cassiopee-Mcjbn9' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13625736/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- cassiopee_1.0.5-2build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-E_jQfv/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-E_jQfv/apt_archive ./ InRelease Get:2 copy:/<>/resolver-E_jQfv/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-E_jQfv/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-E_jQfv/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-E_jQfv/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (267 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-E_jQfv/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12686 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), cmake, doxygen, libboost-serialization-dev, libboost-iostreams-dev, libgoogle-glog-dev, libcppunit-dev Filtered Build-Depends: debhelper (>= 10), cmake, doxygen, libboost-serialization-dev, libboost-iostreams-dev, libgoogle-glog-dev, libcppunit-dev dpkg-deb: building package 'sbuild-build-depends-cassiopee-dummy' in '/<>/resolver-EPuYyY/apt_archive/sbuild-build-depends-cassiopee-dummy.deb'. Ign:1 copy:/<>/resolver-EPuYyY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-EPuYyY/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-EPuYyY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-EPuYyY/apt_archive ./ Sources [263 B] Get:5 copy:/<>/resolver-EPuYyY/apt_archive ./ Packages [585 B] Fetched 2967 B in 0s (228 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install cassiopee build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libustr-1.0-1 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism doxygen file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-regex1.65-dev libboost-regex1.65.1 libboost-serialization-dev libboost-serialization1.65-dev libboost-serialization1.65.1 libboost1.65-dev libbsd0 libclang1-5.0 libcppunit-1.14-0 libcppunit-dev libcroco3 libcurl3 libedit2 libexpat1 libfile-stripnondeterminism-perl libgflags-dev libgflags2.2 libglib2.0-0 libgoogle-glog-dev libgoogle-glog0v5 libicu-dev libicu59 libjsoncpp1 libllvm5.0 liblzo2-2 libmagic-mgc libmagic1 libpipeline1 librhash0 libsigsegv2 libtimedate-perl libtool libunwind8 libuv1 libxapian30 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation ninja-build dh-make dwz doxygen-latex doxygen-doc doxygen-gui graphviz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost1.65-doc libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-context1.65-dev libboost-coroutine1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-fiber1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-test1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev libcppunit-doc icu-doc libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism doxygen file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-regex1.65-dev libboost-regex1.65.1 libboost-serialization-dev libboost-serialization1.65-dev libboost-serialization1.65.1 libboost1.65-dev libbsd0 libclang1-5.0 libcppunit-1.14-0 libcppunit-dev libcroco3 libcurl3 libedit2 libexpat1 libfile-stripnondeterminism-perl libgflags-dev libgflags2.2 libglib2.0-0 libgoogle-glog-dev libgoogle-glog0v5 libicu-dev libicu59 libjsoncpp1 libllvm5.0 liblzo2-2 libmagic-mgc libmagic1 libpipeline1 librhash0 libsigsegv2 libtimedate-perl libtool libunwind8 libuv1 libxapian30 libxml2 m4 man-db po-debconf sbuild-build-depends-cassiopee-dummy 0 upgraded, 62 newly installed, 1 to remove and 0 not upgraded. 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Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic amd64 (x86_64) Toolchain package versions: binutils_2.29.1-6ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-12ubuntu1 gcc-7_7.2.0-12ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.5.1 apt-transport-https_1.5.1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1 base-files_10ubuntu1 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.29.1-6ubuntu1 binutils-common_2.29.1-6ubuntu1 binutils-x86-64-linux-gnu_2.29.1-6ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Oct 26 19:02:05 2017 UTC gpgv: using RSA key gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cassiopee_1.0.5-2build1.dsc dpkg-source: info: extracting cassiopee in cassiopee-1.0.5 dpkg-source: info: unpacking cassiopee_1.0.5.orig.tar.gz dpkg-source: info: unpacking cassiopee_1.0.5-2build1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13625736 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13625736 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13625736 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package cassiopee dpkg-buildpackage: info: source version 1.0.5-2build1 dpkg-buildpackage: info: source distribution bionic dpkg-source --before-build cassiopee-1.0.5 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -rf doc make[1]: Leaving directory '/<>' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -- The C compiler identification is GNU 7.2.0 -- The CXX compiler identification is GNU 7.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at /usr/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106501 Call Stack (most recent call first): /usr/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.9/Modules/FindBoost.cmake:1519 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:29 (find_package) CMake Warning at /usr/share/cmake-3.9/Modules/FindBoost.cmake:771 (message): Imported targets not available for Boost version 106501 Call Stack (most recent call first): /usr/share/cmake-3.9/Modules/FindBoost.cmake:875 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.9/Modules/FindBoost.cmake:1519 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:29 (find_package) -- Boost version: 1.65.1 -- Found the following Boost libraries: -- iostreams -- serialization -- Found Doxygen: /usr/bin/doxygen (found version "1.8.13") found components: doxygen missing components: dot CMake Warning (dev) at /usr/share/cmake-3.9/Modules/FindOpenMP.cmake:200 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "c" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): /usr/share/cmake-3.9/Modules/FindOpenMP.cmake:324 (_OPENMP_GET_FLAGS) CMakeLists.txt:43 (FIND_PACKAGE) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j4 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/depend make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/doc.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/cassie.dir/DependInfo.cmake --color= Scanning dependencies of target doc Scanning dependencies of target cassie make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 11%] Building CXX object src/CMakeFiles/cassie.dir/cassiopee.cxx.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dcassie_EXPORTS -I/<>/obj-x86_64-linux-gnu/bin -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/cassie.dir/cassiopee.cxx.o -c /<>/src/cassiopee.cxx [ 22%] Generating API documentation with Doxygen cd /<> && /usr/bin/doxygen /<>/obj-x86_64-linux-gnu/bin/Doxyfile warning: Tag `SYMBOL_CACHE_SIZE' at line 327 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 547 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 941 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `USE_INLINE_TREES' at line 1132 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1395 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1401 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" /<>/src/Cassiopee.h:324: warning: Compound per_position is not documented. /<>/src/Cassiopee.h:222: warning: Member seq_length (variable) of class CassieIndexer is not documented. /<>/src/Cassiopee.h:421: warning: Member pattern_length (variable) of class CassieSearch is not documented. /<>/src/Cassiopee.h:400: warning: argument 'array' of command @param is not found in the argument list of CassieSearch::search(string suffixes[]) /<>/src/Cassiopee.h:404: warning: The following parameters of CassieSearch::search(string suffixes[]) are not documented: parameter 'suffixes' /<>/src/Cassiopee.h:48: warning: Member pos (variable) of class Match is not documented. /<>/src/Cassiopee.h:325: warning: Member operator()(const Match *struct1, const Match *struct2) (function) of class per_position is not documented. Notice: Output directory `doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/src Reading and parsing tag files Parsing files Preprocessing /<>/src/cassie.cxx... Parsing file /<>/src/cassie.cxx... Preprocessing /<>/src/cassiopee.cxx... Parsing file /<>/src/cassiopee.cxx... Preprocessing /<>/src/Cassiopee.h... Parsing file /<>/src/Cassiopee.h... Preprocessing /<>/src/knife.cxx... Parsing file /<>/src/knife.cxx... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file src/Cassiopee.h... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound Ambiguous... Generating docs for compound CassieIndexer... Generating docs for compound CassieSearch... Generating docs for compound CassiopeeUtils... Generating docs for compound Match... Generating docs for compound per_position... Generating docs for compound TreeNode... Generating namespace index... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 140/65536 hits=964 misses=143 finished... make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 22%] Built target doc [ 33%] Linking CXX shared library ../lib/libcassie.so cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassie.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcassie.so.1 -o ../lib/libcassie.so.1.0.0 CMakeFiles/cassie.dir/cassiopee.cxx.o -L/usr/local/lib -Wl,-rpath,/usr/local/lib: -lglog -lboost_iostreams -lboost_serialization cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libcassie.so.1.0.0 ../lib/libcassie.so.1 ../lib/libcassie.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 33%] Built target cassie make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/depend make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/depend make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/test_cassiopee.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/cassiopee.dir/DependInfo.cmake --color= cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/cassiopeeknife.dir/DependInfo.cmake --color= Scanning dependencies of target cassiopee make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/build Scanning dependencies of target test_cassiopee Scanning dependencies of target cassiopeeknife make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/build make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 44%] Building CXX object src/CMakeFiles/cassiopee.dir/cassie.cxx.o cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu/bin -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/cassiopee.dir/cassie.cxx.o -c /<>/src/cassie.cxx [ 55%] Building CXX object test/CMakeFiles/test_cassiopee.dir/test.cxx.o [ 66%] Building CXX object src/CMakeFiles/cassiopeeknife.dir/knife.cxx.o cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu/bin -I/<>/test/src -I/<>/src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_cassiopee.dir/test.cxx.o -c /<>/test/test.cxx cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/<>/obj-x86_64-linux-gnu/bin -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/cassiopeeknife.dir/knife.cxx.o -c /<>/src/knife.cxx [ 77%] Linking CXX executable ../bin/cassiopeeknife cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassiopeeknife.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cassiopeeknife.dir/knife.cxx.o -o ../bin/cassiopeeknife -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/<>/obj-x86_64-linux-gnu/lib: ../lib/libcassie.so.1.0.0 -lglog -lboost_iostreams -lboost_serialization make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 77%] Built target cassiopeeknife [ 88%] Linking CXX executable ../bin/cassiopee cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/cassiopee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/cassiopee.dir/cassie.cxx.o -o ../bin/cassiopee -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/<>/obj-x86_64-linux-gnu/lib: ../lib/libcassie.so.1.0.0 -lglog -lboost_iostreams -lboost_serialization make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 88%] Built target cassiopee [100%] Linking CXX executable ../bin/test_cassiopee cd /<>/obj-x86_64-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_cassiopee.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_cassiopee.dir/test.cxx.o -o ../bin/test_cassiopee -L/usr/local/lib -Wl,-rpath,/usr/local/lib:/<>/obj-x86_64-linux-gnu/lib ../lib/libcassie.so.1.0.0 -lglog -lcppunit -lboost_iostreams -lboost_serialization make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target test_cassiopee make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test cd obj-x86_64-linux-gnu && make -j4 test ARGS\+=-j4 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j4 Test project /<>/obj-x86_64-linux-gnu Start 1: TestCassie 1/1 Test #1: TestCassie ....................... Passed 0.02 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.03 sec make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/depend make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/doc.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/cassie.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/doc.dir/build.make CMakeFiles/doc.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassie.dir/build.make src/CMakeFiles/cassie.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/cassie.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 11%] Generating API documentation with Doxygen cd /<> && /usr/bin/doxygen /<>/obj-x86_64-linux-gnu/bin/Doxyfile [ 33%] Built target cassie make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/depend make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/depend make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/cassiopee.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/src /<>/obj-x86_64-linux-gnu/src/CMakeFiles/cassiopeeknife.dir/DependInfo.cmake --color= warning: Tag `SYMBOL_CACHE_SIZE' at line 327 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 547 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 941 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/test /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/test /<>/obj-x86_64-linux-gnu/test/CMakeFiles/test_cassiopee.dir/DependInfo.cmake --color= warning: Tag `USE_INLINE_TREES' at line 1132 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1395 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1401 of file `/<>/obj-x86_64-linux-gnu/bin/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassiopeeknife.dir/build.make src/CMakeFiles/cassiopeeknife.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f src/CMakeFiles/cassiopee.dir/build.make src/CMakeFiles/cassiopee.dir/build make -f test/CMakeFiles/test_cassiopee.dir/build.make test/CMakeFiles/test_cassiopee.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/cassiopeeknife.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'test/CMakeFiles/test_cassiopee.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/CMakeFiles/cassiopee.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 55%] Built target test_cassiopee [ 77%] Built target cassiopeeknife [100%] Built target cassiopee /<>/src/Cassiopee.h:324: warning: Compound per_position is not documented. /<>/src/Cassiopee.h:222: warning: Member seq_length (variable) of class CassieIndexer is not documented. /<>/src/Cassiopee.h:421: warning: Member pattern_length (variable) of class CassieSearch is not documented. /<>/src/Cassiopee.h:400: warning: argument 'array' of command @param is not found in the argument list of CassieSearch::search(string suffixes[]) /<>/src/Cassiopee.h:404: warning: The following parameters of CassieSearch::search(string suffixes[]) are not documented: parameter 'suffixes' /<>/src/Cassiopee.h:48: warning: Member pos (variable) of class Match is not documented. /<>/src/Cassiopee.h:325: warning: Member operator()(const Match *struct1, const Match *struct2) (function) of class per_position is not documented. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/src Reading and parsing tag files Parsing files Preprocessing /<>/src/cassie.cxx... Parsing file /<>/src/cassie.cxx... Preprocessing /<>/src/cassiopee.cxx... Parsing file /<>/src/cassiopee.cxx... Preprocessing /<>/src/Cassiopee.h... Parsing file /<>/src/Cassiopee.h... Preprocessing /<>/src/knife.cxx... Parsing file /<>/src/knife.cxx... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file src/Cassiopee.h... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound Ambiguous... Generating docs for compound CassieIndexer... Generating docs for compound CassieSearch... Generating docs for compound CassiopeeUtils... Generating docs for compound Match... Generating docs for compound per_position... Generating docs for compound TreeNode... Generating namespace index... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 140/65536 hits=964 misses=143 finished... make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target doc make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/cassiopee -- Set runtime path of "/<>/debian/tmp/usr/bin/cassiopee" to "" -- Installing: /<>/debian/tmp/usr/bin/cassiopeeknife -- Set runtime path of "/<>/debian/tmp/usr/bin/cassiopeeknife" to "" -- Installing: /<>/debian/tmp/usr/include/CassiopeeConfig.h -- Installing: /<>/debian/tmp/usr/lib/libcassie.so.1.0.0 -- Installing: /<>/debian/tmp/usr/lib/libcassie.so.1 -- Installing: /<>/debian/tmp/usr/lib/libcassie.so -- Set runtime path of "/<>/debian/tmp/usr/lib/libcassie.so.1.0.0" to "" -- Installing: /<>/debian/tmp/usr/include/Cassiopee.h -- Installing: /<>/debian/tmp/usr/include/tree/tree.hh -- Installing: /<>/debian/tmp/usr/include/tree/tree_util.hh make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' rm -f doc/html/jquery.js dh_install make[1]: Leaving directory '/<>' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libcassie-dev: unknown substitution variable ${shlibs:Depends} dh_md5sums dh_builddeb INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libcassie1v5-dbgsym (in debian/.debhelper/libcassie1v5/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing cassiopee (in debian/cassiopee); do_strip: , oemstrip: pkgstriptranslations: processing libcassie-doc (in debian/libcassie-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/cassiopee/DEBIAN/control, package cassiopee, directory debian/cassiopee Searching for duplicated docs in dependency libcassie1v5... symlinking changelog.Debian.gz in cassiopee to file in libcassie1v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package cassiopee ... pkgstripfiles: No PNG files. dpkg-deb: building package 'cassiopee' in '../cassiopee_1.0.5-2build1_amd64.deb'. pkgstripfiles: processing control file: debian/libcassie-doc/DEBIAN/control, package libcassie-doc, directory debian/libcassie-doc pkgstripfiles: Truncating usr/share/doc/libcassie-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package libcassie-doc (to save build time) dpkg-deb: building package 'libcassie-doc' in '../libcassie-doc_1.0.5-2build1_all.deb'. INFO: pkgstriptranslations version 131 pkgstriptranslations: processing cassiopee-dbgsym (in debian/.debhelper/cassiopee/dbgsym-root); do_strip: , oemstrip: INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libcassie1v5 (in debian/libcassie1v5); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/cassiopee/dbgsym-root/DEBIAN/control, package cassiopee-dbgsym, directory debian/.debhelper/cassiopee/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package cassiopee-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'cassiopee-dbgsym' in 'debian/.debhelper/scratch-space/build-cassiopee/cassiopee-dbgsym_1.0.5-2build1_amd64.deb'. Renaming cassiopee-dbgsym_1.0.5-2build1_amd64.deb to cassiopee-dbgsym_1.0.5-2build1_amd64.ddeb pkgstripfiles: processing control file: debian/libcassie1v5/DEBIAN/control, package libcassie1v5, directory debian/libcassie1v5 pkgstripfiles: Truncating usr/share/doc/libcassie1v5/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcassie1v5 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcassie1v5' in '../libcassie1v5_1.0.5-2build1_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libcassie1v5/dbgsym-root/DEBIAN/control, package libcassie1v5-dbgsym, directory debian/.debhelper/libcassie1v5/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcassie1v5-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcassie1v5-dbgsym' in 'debian/.debhelper/scratch-space/build-libcassie1v5/libcassie1v5-dbgsym_1.0.5-2build1_amd64.deb'. Renaming libcassie1v5-dbgsym_1.0.5-2build1_amd64.deb to libcassie1v5-dbgsym_1.0.5-2build1_amd64.ddeb INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libcassie-dev (in debian/libcassie-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libcassie-dev/DEBIAN/control, package libcassie-dev, directory debian/libcassie-dev Searching for duplicated docs in dependency libcassie1v5... symlinking changelog.Debian.gz in libcassie-dev to file in libcassie1v5 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcassie-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcassie-dev' in '../libcassie-dev_1.0.5-2build1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../cassiopee_1.0.5-2build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build cassiopee-1.0.5 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171026-1951 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cassiopee_1.0.5-2build1_amd64.changes: -------------------------------------- Format: 1.8 Date: Thu, 26 Oct 2017 17:10:26 +0000 Source: cassiopee Binary: cassiopee libcassie-doc libcassie1v5 libcassie-dev Architecture: amd64 all Version: 1.0.5-2build1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: cassiopee - index and search tool in genomic sequences libcassie-dev - library and headers for development libcassie-doc - documentation for cassiopee library libcassie1v5 - library implementating search algorithms Changes: cassiopee (1.0.5-2build1) bionic; urgency=medium . * No-change rebuild for boost soname change. Checksums-Sha1: bcf0e5e3c4fcd62ea1943ac25a3a681c438ddfa4 103512 cassiopee-dbgsym_1.0.5-2build1_amd64.ddeb bcd2947731f516bdbab9b03f473f9a1a7e90485f 8442 cassiopee_1.0.5-2build1_amd64.buildinfo 9d1ef2765ad2c78d27750e87abd7165a68e69ce0 12704 cassiopee_1.0.5-2build1_amd64.deb 3050b271eacb847c2c2838b5f3329cb62e0381f6 17460 libcassie-dev_1.0.5-2build1_amd64.deb 1032ea9aa6ad39162df4a7082b5c1efdd0fc59d7 45916 libcassie-doc_1.0.5-2build1_all.deb a36eabbd7ff5ec8f1f8bd2bafaa45fc7fc5fea8d 240032 libcassie1v5-dbgsym_1.0.5-2build1_amd64.ddeb cbfd1b8a994a226f7098f6c7540edf4eb16efad8 37540 libcassie1v5_1.0.5-2build1_amd64.deb Checksums-Sha256: 3b193b16ca8842e950f1ee7732efa7900bc295d301c87966d707632af78ba279 103512 cassiopee-dbgsym_1.0.5-2build1_amd64.ddeb 9a777e3d868d43be6adfdb092b18bb6738e1af80c5cef30fce85f80342b8178d 8442 cassiopee_1.0.5-2build1_amd64.buildinfo 2712613bd1f3d239fa3bf6ccd90870754fcd9238989e0e6ae0875f5d8d1f1608 12704 cassiopee_1.0.5-2build1_amd64.deb ecf7ce395040519e42481cb5ebbd6ba84900d11da68c8d91664e472448900a10 17460 libcassie-dev_1.0.5-2build1_amd64.deb 5d7ec4264cb2e35453c9af21b0e63097eb5dc39b54292bf50e1dd2e6a9c1c293 45916 libcassie-doc_1.0.5-2build1_all.deb 5b03a2e98b2442409528f3f73f763eb0bf51ae0081a3c3ef539b8f84a0b9a85e 240032 libcassie1v5-dbgsym_1.0.5-2build1_amd64.ddeb b51f2fda85b25b903014928f6aac727a0d6eb0a8296a7152d281fc8dab627e28 37540 libcassie1v5_1.0.5-2build1_amd64.deb Files: a06d212f2d6f2e91107a35b15404aee7 103512 debug optional cassiopee-dbgsym_1.0.5-2build1_amd64.ddeb 626c16e42025c45ac2c2b94d39fb5bc5 8442 science optional cassiopee_1.0.5-2build1_amd64.buildinfo 45ef1ca3eeead72905331a6fdaba65bf 12704 science optional cassiopee_1.0.5-2build1_amd64.deb 22991664cb68e57b806a32592fc312bc 17460 libdevel optional libcassie-dev_1.0.5-2build1_amd64.deb 3823b2041e8e82d993e640898171dceb 45916 doc optional libcassie-doc_1.0.5-2build1_all.deb 3913d8043abc6ebc1aa23e6552b629a7 240032 debug optional libcassie1v5-dbgsym_1.0.5-2build1_amd64.ddeb 49d6742fcbca553e0d604b2fc31f1b10 37540 science optional libcassie1v5_1.0.5-2build1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ cassiopee_1.0.5-2build1_amd64.deb --------------------------------- new debian package, version 2.0. size 12704 bytes: control archive=1044 bytes. 833 bytes, 18 lines control 603 bytes, 9 lines md5sums Package: cassiopee Version: 1.0.5-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 53 Depends: libc6 (>= 2.14), libcassie1v5, libgcc1 (>= 1:3.0), libgoogle-glog0v5, libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/osallou/cassiopee-c Description: index and search tool in genomic sequences Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. . This package contains the cassiopee and cassiopeeknife tools. drwxr-xr-x root/root 0 2017-10-26 17:10 ./ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/bin/ -rwxr-xr-x root/root 22616 2017-10-26 17:10 ./usr/bin/cassiopee -rwxr-xr-x root/root 10328 2017-10-26 17:10 ./usr/bin/cassiopeeknife drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/cassiopee/ -rw-r--r-- root/root 2009 2016-11-18 10:53 ./usr/share/doc/cassiopee/README.md -rw-r--r-- root/root 261 2017-08-24 00:52 ./usr/share/doc/cassiopee/README.test lrwxrwxrwx root/root 0 2017-10-26 17:10 ./usr/share/doc/cassiopee/changelog.Debian.gz -> ../libcassie1v5/changelog.Debian.gz -rw-r--r-- root/root 1588 2017-08-24 00:52 ./usr/share/doc/cassiopee/copyright -rw-r--r-- root/root 311 2017-08-24 00:52 ./usr/share/doc/cassiopee/run-unit-test -rw-r--r-- root/root 37 2016-11-18 10:53 ./usr/share/doc/cassiopee/test2.fasta.cass drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/man/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/man/man1/ -rw-r--r-- root/root 627 2017-10-26 17:10 ./usr/share/man/man1/cassiopee.1.gz -rw-r--r-- root/root 265 2017-10-26 17:10 ./usr/share/man/man1/cassiopeeknife.1.gz libcassie-dev_1.0.5-2build1_amd64.deb ------------------------------------- new debian package, version 2.0. size 17460 bytes: control archive=896 bytes. 785 bytes, 19 lines control 349 bytes, 5 lines md5sums Package: libcassie-dev Source: cassiopee Version: 1.0.5-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 110 Depends: libcassie1v5 (= 1.0.5-2build1) Section: libdevel Priority: optional Homepage: https://github.com/osallou/cassiopee-c Description: library and headers for development Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. . This package contains the header files for development. drwxr-xr-x root/root 0 2017-10-26 17:10 ./ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/include/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/include/include/ -rw-r--r-- root/root 10034 2016-11-18 10:53 ./usr/include/include/Cassiopee.h -rw-r--r-- root/root 173 2017-10-26 17:10 ./usr/include/include/CassiopeeConfig.h drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/include/include/tree/ -rw-r--r-- root/root 83035 2016-11-18 10:53 ./usr/include/include/tree/tree.hh -rw-r--r-- root/root 2553 2016-11-18 10:53 ./usr/include/include/tree/tree_util.hh drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/lib/ lrwxrwxrwx root/root 0 2017-10-26 17:10 ./usr/lib/libcassie.so -> libcassie.so.1 drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/libcassie-dev/ lrwxrwxrwx root/root 0 2017-10-26 17:10 ./usr/share/doc/libcassie-dev/changelog.Debian.gz -> ../libcassie1v5/changelog.Debian.gz -rw-r--r-- root/root 1588 2017-08-24 00:52 ./usr/share/doc/libcassie-dev/copyright libcassie-doc_1.0.5-2build1_all.deb ----------------------------------- new debian package, version 2.0. size 45916 bytes: control archive=3676 bytes. 805 bytes, 19 lines control 10650 bytes, 130 lines md5sums Package: libcassie-doc Source: cassiopee Version: 1.0.5-2build1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 378 Depends: libjs-jquery Section: doc Priority: optional Homepage: https://github.com/osallou/cassiopee-c Description: documentation for cassiopee library Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. . This package contains the doxygen generated documentation for the cassiopee library for development. drwxr-xr-x root/root 0 2017-10-26 17:10 ./ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc-base/ -rw-r--r-- root/root 515 2017-08-24 00:52 ./usr/share/doc-base/libcassie-doc drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/cassiopee/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/cassiopee/html/ -rw-r--r-- root/root 45937 2017-10-26 17:10 ./usr/share/doc/cassiopee/html/Cassiopee_8h_source.html -rw-r--r-- root/root 4699 2017-10-26 17:10 ./usr/share/doc/cassiopee/html/annotated.html -rw-r--r-- root/root 676 2017-10-26 17:10 ./usr/share/doc/cassiopee/html/bc_s.png -rw-r--r-- root/root 147 2017-10-26 17:10 ./usr/share/doc/cassiopee/html/bdwn.png -rw-r--r-- root/root 3153 2017-10-26 17:10 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libcassie1v5_1.0.5-2build1_amd64.deb ------------------------------------ new debian package, version 2.0. size 37540 bytes: control archive=996 bytes. 865 bytes, 19 lines control 213 bytes, 3 lines md5sums 25 bytes, 1 lines shlibs 75 bytes, 2 lines triggers Package: libcassie1v5 Source: cassiopee Version: 1.0.5-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 152 Depends: libboost-serialization1.65.1, libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libgoogle-glog0v5, libstdc++6 (>= 5.2) Conflicts: libcassie1 Replaces: libcassie1 Section: science Priority: optional Homepage: https://github.com/osallou/cassiopee-c Description: library implementating search algorithms Cassiopee index and search library C implementation. It is a complete rewrite of the ruby Cassiopee gem. It scans an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions. drwxr-xr-x root/root 0 2017-10-26 17:10 ./ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/lib/ lrwxrwxrwx root/root 0 2017-10-26 17:10 ./usr/lib/libcassie.so.1 -> libcassie.so.1.0.0 -rw-r--r-- root/root 141320 2017-10-26 17:10 ./usr/lib/libcassie.so.1.0.0 drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-10-26 17:10 ./usr/share/doc/libcassie1v5/ -rw-r--r-- root/root 922 2017-10-26 17:10 ./usr/share/doc/libcassie1v5/changelog.Debian.gz -rw-r--r-- root/root 1588 2017-08-24 00:52 ./usr/share/doc/libcassie1v5/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 11588 Build-Time: 26 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 21 Job: cassiopee_1.0.5-2build1.dsc Machine Architecture: amd64 Package: cassiopee Package-Time: 47 Source-Version: 1.0.5-2build1 Space: 11588 Status: successful Version: 1.0.5-2build1 -------------------------------------------------------------------------------- Finished at 20171026-1951 Build needed 00:00:47, 11588k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13625736 Scanning for processes to kill in build PACKAGEBUILD-13625736 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13625736 Stopping target for build PACKAGEBUILD-13625736 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13625736 Removing build PACKAGEBUILD-13625736