https://launchpad.net/ubuntu/+source/cbflib/0.9.6+dfsg1-2build1/+build/19297191 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-003 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:45:10 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_189 python-lpbuildd_189 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.9 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 May 10:02:36 ntpdate[1916]: adjust time server 10.211.37.1 offset 0.044646 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19297191 --image-type chroot /home/buildd/filecache-default/7f6882774d93a6ce12d34cd2f4e4b83a707bcc6e Creating target for build PACKAGEBUILD-19297191 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19297191 Starting target for build PACKAGEBUILD-19297191 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19297191 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19297191 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19297191 Updating target for build PACKAGEBUILD-19297191 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [119 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 Packages [971 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe amd64 Packages [8728 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5175 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 Packages [80.5 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [36.3 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe amd64 Packages [480 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [290 kB] Fetched 16.8 MB in 8s (1998 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files cpp-9 dash debconf e2fsprogs g++-9 gcc-10-base gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv libacl1 libapt-pkg6.0 libasan5 libatomic1 libcap2 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libext2fs2 libgcc-9-dev libgcc-s1 libgomp1 libidn2-0 libitm1 liblsan0 libncurses6 libncursesw6 libperl5.30 libprocps8 libquadmath0 libseccomp2 libsqlite3-0 libss2 libstdc++-9-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 linux-libc-dev logsave make ncurses-base ncurses-bin perl perl-base perl-modules-5.30 procps systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata 60 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 50.3 MB of archives. After this operation, 101 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcrypt-dev amd64 1:4.4.15-1ubuntu1 [104 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcrypt1 amd64 1:4.4.15-1ubuntu1 [78.2 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main amd64 base-files amd64 11ubuntu7 [60.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main amd64 libperl5.30 amd64 5.30.0-10 [3939 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main amd64 perl amd64 5.30.0-10 [224 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main amd64 perl-base amd64 5.30.0-10 [1511 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main amd64 perl-modules-5.30 all 5.30.0-10 [2738 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main amd64 debconf all 1.5.74 [121 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main amd64 dash amd64 0.5.10.2-7 [86.3 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-bin amd64 6.2-1 [172 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main amd64 ncurses-base all 6.2-1 [18.7 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main amd64 sysvinit-utils amd64 2.96-3ubuntu1 [20.6 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libubsan1 amd64 10.1.0-1ubuntu1 [136 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libtsan0 amd64 10.1.0-1ubuntu1 [320 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libquadmath0 amd64 10.1.0-1ubuntu1 [146 kB] Get:16 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 liblsan0 amd64 10.1.0-1ubuntu1 [144 kB] Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libitm1 amd64 10.1.0-1ubuntu1 [26.3 kB] Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libgomp1 amd64 10.1.0-1ubuntu1 [101 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 gcc-10-base amd64 10.1.0-1ubuntu1 [19.3 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libgcc-s1 amd64 10.1.0-1ubuntu1 [41.5 kB] Get:21 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcc1-0 amd64 10.1.0-1ubuntu1 [41.2 kB] Get:22 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libatomic1 amd64 10.1.0-1ubuntu1 [9288 B] Get:23 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libstdc++6 amd64 10.1.0-1ubuntu1 [503 kB] Get:24 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 systemd-sysv amd64 245.5-2ubuntu2 [10.3 kB] Get:25 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 systemd-timesyncd amd64 245.5-2ubuntu2 [28.0 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main amd64 libacl1 amd64 2.2.53-8 [18.9 kB] Get:27 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libcap2 amd64 1:2.34-1 [17.9 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main amd64 libcryptsetup12 amd64 2:2.3.1-1ubuntu1 [192 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main amd64 libidn2-0 amd64 2.3.0-1 [52.6 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main amd64 libseccomp2 amd64 2.4.3-1ubuntu2 [42.0 kB] Get:31 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 systemd amd64 245.5-2ubuntu2 [3797 kB] Get:32 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libsystemd0 amd64 245.5-2ubuntu2 [271 kB] Get:33 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 libudev1 amd64 245.5-2ubuntu2 [78.4 kB] Get:34 http://ftpmaster.internal/ubuntu groovy/main amd64 libapt-pkg6.0 amd64 2.1.1 [839 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main amd64 gpgv amd64 2.2.20-1ubuntu1 [200 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main amd64 apt amd64 2.1.1 [1289 kB] Get:37 http://ftpmaster.internal/ubuntu groovy/main amd64 logsave amd64 1.45.6-1ubuntu1 [10.3 kB] Get:38 http://ftpmaster.internal/ubuntu groovy/main amd64 libext2fs2 amd64 1.45.6-1ubuntu1 [184 kB] Get:39 http://ftpmaster.internal/ubuntu groovy/main amd64 e2fsprogs amd64 1.45.6-1ubuntu1 [529 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main amd64 libncurses6 amd64 6.2-1 [101 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main amd64 libncursesw6 amd64 6.2-1 [132 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main amd64 libtinfo6 amd64 6.2-1 [87.1 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main amd64 libcom-err2 amd64 1.45.6-1ubuntu1 [9664 B] Get:44 http://ftpmaster.internal/ubuntu groovy/main amd64 libprocps8 amd64 2:3.3.16-4ubuntu1 [32.9 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/main amd64 libss2 amd64 1.45.6-1ubuntu1 [11.3 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/main amd64 procps amd64 2:3.3.16-4ubuntu1 [232 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main amd64 libsqlite3-0 amd64 3.31.1-5 [548 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main amd64 tzdata all 2020a-0ubuntu1 [293 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main amd64 libasan5 amd64 9.3.0-12ubuntu1 [395 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main amd64 g++-9 amd64 9.3.0-12ubuntu1 [8404 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-9 amd64 9.3.0-12ubuntu1 [8239 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/main amd64 libstdc++-9-dev amd64 9.3.0-12ubuntu1 [1713 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/main amd64 libgcc-9-dev amd64 9.3.0-12ubuntu1 [2359 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/main amd64 cpp-9 amd64 9.3.0-12ubuntu1 [7489 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main amd64 gcc-9-base amd64 9.3.0-12ubuntu1 [19.5 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main amd64 gpg amd64 2.2.20-1ubuntu1 [485 kB] Get:57 http://ftpmaster.internal/ubuntu groovy/main amd64 gpgconf amd64 2.2.20-1ubuntu1 [124 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main amd64 gpg-agent amd64 2.2.20-1ubuntu1 [232 kB] Get:59 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 linux-libc-dev amd64 5.4.0-29.33 [1098 kB] Get:60 http://ftpmaster.internal/ubuntu groovy-proposed/main amd64 make amd64 4.2.1-2 [162 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 50.3 MB in 2s (31.8 MB/s) (Reading database ... 12816 files and directories currently installed.) 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Current default time zone: 'Etc/UTC' Local time is now: Wed May 13 10:03:19 UTC 2020. Universal Time is now: Wed May 13 10:03:19 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up make (4.2.1-2) ... Setting up libncurses6:amd64 (6.2-1) ... Setting up libquadmath0:amd64 (10.1.0-1ubuntu1) ... Setting up libatomic1:amd64 (10.1.0-1ubuntu1) ... Setting up libss2:amd64 (1.45.6-1ubuntu1) ... Setting up libncursesw6:amd64 (6.2-1) ... Setting up logsave (1.45.6-1ubuntu1) ... Setting up libubsan1:amd64 (10.1.0-1ubuntu1) ... Setting up libcrypt-dev:amd64 (1:4.4.15-1ubuntu1) ... Setting up gpgconf (2.2.20-1ubuntu1) ... Setting up libperl5.30:amd64 (5.30.0-10) ... Setting up libcryptsetup12:amd64 (2:2.3.1-1ubuntu1) ... Setting up libcc1-0:amd64 (10.1.0-1ubuntu1) ... Setting up gpg (2.2.20-1ubuntu1) ... Setting up liblsan0:amd64 (10.1.0-1ubuntu1) ... Setting up libprocps8:amd64 (2:3.3.16-4ubuntu1) ... Setting up libitm1:amd64 (10.1.0-1ubuntu1) ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19297191 amd64 groovy-proposed -c chroot:build-PACKAGEBUILD-19297191 --arch=amd64 --dist=groovy-proposed --nolog -A cbflib_0.9.6+dfsg1-2build1.dsc Initiating build PACKAGEBUILD-19297191 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-178-generic #208-Ubuntu SMP Sun Apr 5 23:45:10 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-003.buildd +==============================================================================+ | cbflib 0.9.6+dfsg1-2build1 (amd64) 13 May 2020 10:03 | +==============================================================================+ Package: cbflib Version: 0.9.6+dfsg1-2build1 Source Version: 0.9.6+dfsg1-2build1 Distribution: groovy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/cbflib-x8e_eq/cbflib-0.9.6+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/cbflib-x8e_eq' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19297191/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- cbflib_0.9.6+dfsg1-2build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-66Vowg/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-66Vowg/apt_archive ./ InRelease Get:2 copy:/<>/resolver-66Vowg/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-66Vowg/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-66Vowg/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-66Vowg/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (198 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-66Vowg/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12816 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, libhdf5-dev, pkg-config, python3-all-dbg, python3-all-dev Filtered Build-Depends: debhelper-compat (= 12), dh-python, libhdf5-dev, pkg-config, python3-all-dbg, python3-all-dev dpkg-deb: building package 'sbuild-build-depends-cbflib-dummy' in '/<>/resolver-9rQHzi/apt_archive/sbuild-build-depends-cbflib-dummy.deb'. Ign:1 copy:/<>/resolver-9rQHzi/apt_archive ./ InRelease Get:2 copy:/<>/resolver-9rQHzi/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-9rQHzi/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-9rQHzi/apt_archive ./ Sources [252 B] Get:5 copy:/<>/resolver-9rQHzi/apt_archive ./ Packages [565 B] Fetched 2936 B in 0s (215 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install cbflib build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu66 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-all-dbg libpython3-all-dev libpython3-dbg libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dbg libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support pkg-config po-debconf python3 python3-all python3-all-dbg python3-all-dev python3-dbg python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-dbg python3.8-dev python3.8-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc python3-gdbm-dbg python3-tk-dbg binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl gdb The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libbsd0 libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu66 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpython3-all-dbg libpython3-all-dev libpython3-dbg libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dbg libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support pkg-config po-debconf python3 python3-all python3-all-dbg python3-all-dev python3-dbg python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-dbg python3.8-dev python3.8-minimal sbuild-build-depends-cbflib-dummy zlib1g-dev 0 upgraded, 81 newly installed, 0 to remove and 0 not upgraded. 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groovy/main amd64 python3.8-dev amd64 3.8.2-1ubuntu1.1 [515 kB] Get:80 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-dev amd64 3.8.2-0ubuntu2 [1212 B] Get:81 http://ftpmaster.internal/ubuntu groovy/main amd64 python3-all-dev amd64 3.8.2-0ubuntu2 [1112 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 66.6 MB in 1s (66.7 MB/s) Selecting previously unselected package libpython3.8-minimal:amd64. 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Setting up libhdf5-cpp-103-1:amd64 (1.10.6+repack-2) ... Setting up libjpeg8-dev:amd64 (8c-2ubuntu8) ... Setting up python3-lib2to3 (3.8.2-1ubuntu1) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-2) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.2-1ubuntu1) ... Setting up dh-python (4.20200315) ... Setting up python3.8-dbg (3.8.2-1ubuntu1.1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up python3-all (3.8.2-0ubuntu2) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.6+repack-2) ... Setting up libpython3.8-dev:amd64 (3.8.2-1ubuntu1.1) ... 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Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-178-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-12ubuntu1 gcc-9_9.3.0-12ubuntu1 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-12ubuntu1 libstdc++6_10.1.0-1ubuntu1 linux-libc-dev_5.4.0-29.33 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.1 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu7 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 binutils-x86-64-linux-gnu_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-12ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu9 file_1:5.38-4 findutils_4.7.0-1ubuntu1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-12ubuntu1 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10.1.0-1ubuntu1 gcc-9_9.3.0-12ubuntu1 gcc-9-base_9.3.0-12ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-0ubuntu4 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_2.13.3-7ubuntu5 libapt-pkg6.0_2.1.1 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2 libasan5_9.3.0-12ubuntu1 libassuan0_2.5.3-7ubuntu2 libatomic1_10.1.0-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-6ubuntu1 libblkid1_2.34-0.1ubuntu9 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.34-1 libcc1-0_10.1.0-1ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1ubuntu1 libcrypt1_1:4.4.15-1ubuntu1 libcryptsetup12_2:2.3.1-1ubuntu1 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libexpat1-dev_2.2.9-1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu9 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-12ubuntu1 libgcc-s1_10.1.0-1ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10.1.0-1ubuntu1 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10.1.0-1ubuntu1 libgpg-error0_1.37-1 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed5_3.5.1+really3.5.1-2 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libip4tc2_1.8.4-3ubuntu2 libisl22_0.22.1-1 libitm1_10.1.0-1ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg-turbo8-dev_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c4_0.13.1+dfsg-7 libkmod2_27-1ubuntu2 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.1.0-1ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps8_2:3.3.16-4ubuntu1 libpython3-all-dbg_3.8.2-0ubuntu2 libpython3-all-dev_3.8.2-0ubuntu2 libpython3-dbg_3.8.2-0ubuntu2 libpython3-dev_3.8.2-0ubuntu2 libpython3-stdlib_3.8.2-0ubuntu2 libpython3.8_3.8.2-1ubuntu1.1 libpython3.8-dbg_3.8.2-1ubuntu1.1 libpython3.8-dev_3.8.2-1ubuntu1.1 libpython3.8-minimal_3.8.2-1ubuntu1.1 libpython3.8-stdlib_3.8.2-1ubuntu1.1 libquadmath0_10.1.0-1ubuntu1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu2 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-5 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-12ubuntu1 libstdc++6_10.1.0-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.5-2ubuntu2 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.1.0-1ubuntu1 libubsan1_10.1.0-1ubuntu1 libuchardet0_0.0.6-3build1 libudev1_245.5-2ubuntu2 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-29.33 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu9 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu2 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu5 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-3build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-4ubuntu1 python3_3.8.2-0ubuntu2 python3-all_3.8.2-0ubuntu2 python3-all-dbg_3.8.2-0ubuntu2 python3-all-dev_3.8.2-0ubuntu2 python3-dbg_3.8.2-0ubuntu2 python3-dev_3.8.2-0ubuntu2 python3-distutils_3.8.2-1ubuntu1 python3-lib2to3_3.8.2-1ubuntu1 python3-minimal_3.8.2-0ubuntu2 python3.8_3.8.2-1ubuntu1.1 python3.8-dbg_3.8.2-1ubuntu1.1 python3.8-dev_3.8.2-1ubuntu1.1 python3.8-minimal_3.8.2-1ubuntu1.1 readline-common_8.0-4 sbuild-build-depends-cbflib-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 systemd_245.5-2ubuntu2 systemd-sysv_245.5-2ubuntu2 systemd-timesyncd_245.5-2ubuntu2 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020a-0ubuntu1 ubuntu-keyring_2020.02.11.2 util-linux_2.34-0.1ubuntu9 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2ubuntu1 zlib1g-dev_1:1.2.11.dfsg-2ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed May 13 10:06:55 2020 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cbflib_0.9.6+dfsg1-2build1.dsc dpkg-source: info: extracting cbflib in cbflib-0.9.6+dfsg1 dpkg-source: info: unpacking cbflib_0.9.6+dfsg1.orig.tar.xz dpkg-source: info: unpacking cbflib_0.9.6+dfsg1-2build1.debian.tar.xz tar: debian/changelog: time stamp 2020-05-13 10:06:53 is 175.387043484 s in the future tar: debian: time stamp 2020-05-13 10:06:53 is 175.384759532 s in the future dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-makefile-fix-Get-system-HDF5-config-from-pkg-config.patch dpkg-source: info: applying 0002-makefile-fix-Fix-CBFLIB_DONT_USE_LOCAL_TIFF-config-v.patch dpkg-source: info: applying 0003-makefile-fix-Allow-disabling-PyCBF-from-env-with-NOP.patch dpkg-source: info: applying 0004-makefile-fix-Install-libs-to-CBF_PREFIX-INSTALL_LIB.patch dpkg-source: info: applying 0005-makefile-fix-Install-lib-to-SOVERSION-and-add-symlin.patch dpkg-source: info: applying 0006-makefile-fix-Allow-disabling-libimg-and-libfcb-build.patch dpkg-source: info: applying 0007-trailing-spaces.patch dpkg-source: info: applying 0007-makefile-fix-Do-not-link-example-progs-w.-libimg.patch dpkg-source: info: applying 0008-makefile-fix-Add-SONAME-to-linker-flags.patch dpkg-source: info: applying 0009-makefile-fix-Pick-up-CFLAGS-and-LDFLAGS-from-the-env.patch dpkg-source: info: applying 0010-makefile-fix-Prepend-CPPFLAGS-value-to-CFLAGS.patch dpkg-source: info: applying 0011-makefile-fix-Add-LDFLAGS-to-SOLDFLAGS-to-pick-up-har.patch dpkg-source: info: applying 0013-makefile-deb-Use-DESTDIR-usr-as-CBF_PREFIX.patch dpkg-source: info: applying 0014-makefile-deb-Do-not-build-tiff2cbf.patch dpkg-source: info: applying 0016-cross.patch dpkg-source: info: applying 0016-add-missing-LdFLAG-to-cbf_testxfelread.patch dpkg-source: info: applying 0017-Added-an-extra_compile_args-to-setup.py.patch dpkg-source: info: applying 0018-fix-the-FTBFS-with-missing-m4-Makefile.m4.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19297191 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19297191 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19297191 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package cbflib dpkg-buildpackage: info: source version 0.9.6+dfsg1-2build1 dpkg-buildpackage: info: source distribution groovy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' ./.undosymlinks make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' /usr/bin/make 'C++:=$(CXX)' /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/lib -Dhdf5_prefix= -Dextra_compile_args=-I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_clean --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:217: python3.8 setup.py clean running clean removing '/<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it I: pybuild base:217: python3.8-dbg setup.py clean running clean removing '/<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -f pycbf/setup.py make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --with python3 --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_configure /usr/bin/make 'C++:=$(CXX)' /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/lib -Dhdf5_prefix= -Dextra_compile_args=-I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_configure --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:217: python3.8 setup.py config running config I: pybuild base:217: python3.8-dbg setup.py config running config make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' # build the C/C++ library dh_auto_build -- 'C++:=$(CXX)' all make -j1 "INSTALL=install --strip-program=true" C\+\+:=\$\(CXX\) all make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_exit_binary.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_exit_binary.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_next_binary.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_next_binary.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_open_cifin.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_open_cifin.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_packed.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_packed.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_bits.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_read_bits.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_image.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_read_image.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_xds_i2.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_read_xds_i2.f90 chmod a+x .symlinks chmod a+x .undosymlinks chmod a+x doc/.symlinks chmod a+x doc/.undosymlinks ./.symlinks --use_ln touch symlinksdone rm -f /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /<>/cbflib-0.9.6+dfsg1/lib gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX \ -DCBF_FILTER_STATIC -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /<>/cbflib-0.9.6+dfsg1/src/cbf.c /<>/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /<>/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /<>/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /<>/cbflib-0.9.6+dfsg1/src/cbf_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /<>/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /<>/cbflib-0.9.6+dfsg1/src/cbf_codes.c /<>/cbflib-0.9.6+dfsg1/src/cbf_compress.c /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c /<>/cbflib-0.9.6+dfsg1/src/cbf_copy.c /<>/cbflib-0.9.6+dfsg1/src/cbf_file.c /<>/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /<>/cbflib-0.9.6+dfsg1/src/cbf_lex.c /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /<>/cbflib-0.9.6+dfsg1/src/cbf_packed.c /<>/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /<>/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c /<>/cbflib-0.9.6+dfsg1/src/cbf_string.c /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c /<>/cbflib-0.9.6+dfsg1/src/cbf_tree.c /<>/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /<>/cbflib-0.9.6+dfsg1/src/cbf_write.c /<>/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_ws.c /<>/cbflib-0.9.6+dfsg1/src/cbff.c /<>/cbflib-0.9.6+dfsg1/src/md5c.c /<>/cbflib-0.9.6+dfsg1/src/img.c /<>/cbflib-0.9.6+dfsg1/src/fgetln.c /<>/cbflib-0.9.6+dfsg1/src/cbf.c: In function ‘cbf_convert_dictionary_definition’: /<>/cbflib-0.9.6+dfsg1/src/cbf.c:5474:22: warning: ‘itemname’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5474 | cbf_failnez( cbf_set_hashedvalue (cbfdictionary, itemname, "name", -1)) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function ‘strncpy’, inlined from ‘cbf_validate’ at /<>/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘cbf_validate’ at /<>/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfcat_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function ‘cbf_read_h5file_group’; did you mean ‘cbf_read_h5file’? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable ‘indent’ [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfdb_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable ‘indent’ [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__entry_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable ‘indent’ [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable ‘node’ set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable ‘data_row’ set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable ‘diffrn_scan_axis’ set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__array_structure_list_axis’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable ‘rotation_axis_path’ [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__cbf_general_axes’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable ‘equipment_component’ [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__axis’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable ‘axis_rotation_axis’ set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_h5ds_store_as_column’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable ‘close’ [-Wunused-variable] 29166 | char open, close; | ^~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable ‘open’ [-Wunused-variable] 29166 | char open, close; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable ‘type_order’ set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable ‘byte_order’ [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable ‘buffer’ [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_object_visit’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable ‘checked_digest’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable ‘atcbf’ set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable ‘atnexus’ [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_read_h5file_group’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable ‘errorcode’ [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable ‘node’ [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: ‘cbf_write_nx2cbf__cbfdb_op’ defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: ‘cbf_write_nx2cbf__cbfcat_op’ defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: ‘cbf_require_nxdetectors’ defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_get_nxdata_field_name2’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: ‘%06d’ directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 11 bytes into a destination of size 7 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23197:42: warning: ‘offset[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23197 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[2])); | ^~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23195:42: warning: ‘offset[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23195 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[1])); | ^~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23193:42: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23193 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[0])); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string.part.0’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncat’, inlined from ‘cbf_append_string.part.0’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:313:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin_strncat’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from ‘cbf_append_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from ‘cbf_set_minicbf_header’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function ‘cbf_compress_nibble_offset’: /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: ‘dmode[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function ‘cbf_lex_wrapper’: /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable ‘cbffile’ set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: ‘yytname’ defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /<>/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /<>/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/src/img.c:12: In function ‘memcpy’, inlined from ‘img_set_tags’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from ‘img_set_tags’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from ‘img_free_handle’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:34:10: warning: ‘__builtin___memcpy_chk’ specified bound between 18446744039349813248 and 18446744073709551600 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ar cr /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a *.o /usr/bin/ranlib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/adscimg2cbf In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:245:27: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 245 | strstrhit = cbf_cistrnstr(argv[iarg], flags[j], strlen(flags[j])); | ^ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:176:10: warning: unused variable ‘thickness’ [-Wunused-variable] 176 | double thickness=0.; | ^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:162:7: warning: variable ‘cbf_status’ set but not used [-Wunused-but-set-variable] 162 | int cbf_status; | ^~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:13: In function ‘strncpy’, inlined from ‘gethd.constprop’ at /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:31:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function ‘gethd.constprop’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:28:7: note: length computed here 28 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub2’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:793:20: warning: passing argument 1 of ‘convertroi’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 793 | if (convertroi(roi, smv_size1, smv_size2, | ^~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:433:22: note: expected ‘char *’ but argument is of type ‘const char *’ 433 | int convertroi(char *roi, int fastdim, int slowdim, | ~~~~~~^~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1727:27: warning: passing argument 1 of ‘cbf_free_text’ from incompatible pointer type [-Wincompatible-pointer-types] 1727 | cbf_free_text(&log,NULL); | ^~~~ | | | char ** In file included from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:262, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: /<>/cbflib-0.9.6+dfsg1/include/cbf_alloc.h:274:33: note: expected ‘const char **’ but argument is of type ‘char **’ 274 | int cbf_free_text (const char **old_block, size_t *old_nelem); | ~~~~~~~~~~~~~^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:30: warning: variable ‘valmax’ set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:16: warning: variable ‘valnew’ set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:27: warning: unused variable ‘kjcm’ [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:21: warning: unused variable ‘kicm’ [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:522:28: warning: variable ‘smv_bin_type’ set but not used [-Wunused-but-set-variable] 522 | int smv_bin, smv_adc, smv_bin_type; | ^~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:2075:34: warning: passing argument 4 of ‘adscimg2cbf_sub2’ makes integer from pointer without a cast [-Wint-conversion] 2075 | NULL,NULL,NULL,NULL, | ^~~~ | | | void * /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:481:29: note: expected ‘size_t’ {aka ‘long unsigned int’} but argument is of type ‘void *’ 481 | size_t old_int_data_size, | ~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: In function ‘strncpy’, inlined from ‘gethd.constprop’ at /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:263:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘gethd.constprop’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:260:7: note: length computed here 260 | l = strlen (field); | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub2’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:588:27: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 588 | sprintf(temp, "%s=%s;\n", s, s1); | ^~ ~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 2050 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1846:53: warning: ‘smooth_data_as_int’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1846 | if (ki > 0 && smooth_data_as_int[(ki-1)*(1+fasthigh-fastlow+fastpadlow+fastpadhigh)/(bin+1)+kj] > 0) { | ^ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/arvai_test.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/arvai_test mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cbf2adscimg In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:3: In function ‘strncpy’, inlined from ‘gethd’ at /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:21:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c: In function ‘gethd’: /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:18:7: note: length computed here 18 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:126: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function ‘padhd’: /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function ‘cbfhandle2img_sub’: /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:57: warning: variable ‘dirinc’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:46: warning: variable ‘dirend’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:35: warning: variable ‘dirsta’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:28: warning: variable ‘second’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:21: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:13: warning: variable ‘colrow’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cbf2nexus.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cbf2nexus mkdir -p /<>/cbflib-0.9.6+dfsg1/bin g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cif2c bash: g: command not found make[2]: [Makefile:1771: /<>/cbflib-0.9.6+dfsg1/bin/cif2c] Error 127 (ignored) rm -f /<>/cbflib-0.9.6+dfsg1/solib/libcbf.so rm -f *.o mkdir -p /<>/cbflib-0.9.6+dfsg1/solib gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX -fPIC -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /<>/cbflib-0.9.6+dfsg1/src/cbf.c /<>/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /<>/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /<>/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /<>/cbflib-0.9.6+dfsg1/src/cbf_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /<>/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /<>/cbflib-0.9.6+dfsg1/src/cbf_codes.c /<>/cbflib-0.9.6+dfsg1/src/cbf_compress.c /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c /<>/cbflib-0.9.6+dfsg1/src/cbf_copy.c /<>/cbflib-0.9.6+dfsg1/src/cbf_file.c /<>/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /<>/cbflib-0.9.6+dfsg1/src/cbf_lex.c /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /<>/cbflib-0.9.6+dfsg1/src/cbf_packed.c /<>/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /<>/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c /<>/cbflib-0.9.6+dfsg1/src/cbf_string.c /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c /<>/cbflib-0.9.6+dfsg1/src/cbf_tree.c /<>/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /<>/cbflib-0.9.6+dfsg1/src/cbf_write.c /<>/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_ws.c /<>/cbflib-0.9.6+dfsg1/src/cbff.c /<>/cbflib-0.9.6+dfsg1/src/md5c.c /<>/cbflib-0.9.6+dfsg1/src/img.c /<>/cbflib-0.9.6+dfsg1/src/fgetln.c In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function ‘strncpy’, inlined from ‘cbf_validate’ at /<>/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘cbf_validate’ at /<>/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfcat_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function ‘cbf_read_h5file_group’; did you mean ‘cbf_read_h5file’? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable ‘indent’ [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfdb_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable ‘indent’ [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__entry_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable ‘indent’ [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable ‘node’ set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable ‘data_row’ set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable ‘diffrn_scan_axis’ set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__array_structure_list_axis’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable ‘rotation_axis_path’ [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__cbf_general_axes’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable ‘equipment_component’ [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__axis’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable ‘axis_rotation_axis’ set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_h5ds_store_as_column’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable ‘close’ [-Wunused-variable] 29166 | char open, close; | ^~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable ‘open’ [-Wunused-variable] 29166 | char open, close; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable ‘type_order’ set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable ‘byte_order’ [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable ‘buffer’ [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_object_visit’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable ‘checked_digest’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable ‘atcbf’ set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable ‘atnexus’ [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_read_h5file_group’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable ‘errorcode’ [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable ‘node’ [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: ‘cbf_write_nx2cbf__cbfdb_op’ defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: ‘cbf_write_nx2cbf__cbfcat_op’ defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: ‘cbf_require_nxdetectors’ defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_get_nxdata_field_name2’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: ‘%06d’ directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 11 bytes into a destination of size 7 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string.part.0’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncat’, inlined from ‘cbf_append_string.part.0’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:313:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:136:10: warning: ‘__builtin_strncat’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 136 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from ‘cbf_append_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from ‘cbf_set_minicbf_header’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function ‘cbf_compress_nibble_offset’: /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: ‘dmode[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function ‘cbf_lex_wrapper’: /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable ‘cbffile’ set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: ‘yytname’ defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /<>/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /<>/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ gcc -o /<>/cbflib-0.9.6+dfsg1/solib/libcbf.so *.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libcbf.so.1 -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 rm -f *.o mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function ‘strncpy’, inlined from ‘main’ at /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c /<>/cbflib-0.9.6+dfsg1/src/fgetln.c -lm -o /<>/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~ /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:20: note: directive argument in the range [0, 2147483647] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 15 bytes into a destination of size 10 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/cbflib-0.9.6+dfsg1/src/fgetln.c:30: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/convert_image.c /<>/cbflib-0.9.6+dfsg1/src/img.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/convert_image /<>/cbflib-0.9.6+dfsg1/examples/convert_image.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/convert_image.c:533:7: warning: variable ‘transpose’ set but not used [-Wunused-but-set-variable] 533 | int transpose; | ^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /<>/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /<>/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/src/img.c:12: In function ‘memcpy’, inlined from ‘img_set_tags’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from ‘img_set_tags’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from ‘img_free_handle’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:34:10: warning: ‘__builtin___memcpy_chk’ specified bound between 18446744039349813248 and 18446744073709551600 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: /tmp/ccc7sY3P.o: in function `main': ././examples/convert_image.c:672: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/convert_minicbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/convert_minicbf chmod 755 /<>/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/img2cif.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/img2cif gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/makecbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/makecbf gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/minicbf2nexus.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/minicbf2nexus mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/nexus2cbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/nexus2cbf mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/roi_peaksearch.c /<>/cbflib-0.9.6+dfsg1/examples/dps_peaksearch.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/roi_peaksearch mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/sequence_match.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/sequence_match mkdir -p /<>/cbflib-0.9.6+dfsg1/bin g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testcell.C -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testcell bash: g: command not found make[2]: [Makefile:1762: /<>/cbflib-0.9.6+dfsg1/bin/testcell] Error 127 (ignored) mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /<>/cbflib-0.9.6+dfsg1/examples/testalloc.c -L/<>/cbflib-0.9.6+dfsg1/lib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /<>/cbflib-0.9.6+dfsg1/bin/testalloc.tmp mv /<>/cbflib-0.9.6+dfsg1/bin/testalloc.tmp /<>/cbflib-0.9.6+dfsg1/bin/testalloc mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testreals.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testreals mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testflat.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testflat mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testflatpacked.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testflatpacked mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testhdf5.c -L/<>/cbflib-0.9.6+dfsg1/lib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp mv /<>/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp /<>/cbflib-0.9.6+dfsg1/bin/testhdf5 mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /<>/cbflib-0.9.6+dfsg1/examples/test_cbf_airy_disk.c -L/<>/cbflib-0.9.6+dfsg1/lib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp mv /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /<>/cbflib-0.9.6+dfsg1/examples/cbf_testxfelread.c -L/<>/cbflib-0.9.6+dfsg1/lib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /<>/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp mv /<>/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp /<>/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' # build the python extension. /usr/bin/make 'C++:=$(CXX)' /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' make[2]: '/<>/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_build --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py copying pycbf.py -> /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build running build_ext building '_pycbf' extension creating build creating build/temp.linux-x86_64-3.8 creating build/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.8 -c pycbf_wrap.c -o build/temp.linux-x86_64-3.8/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3512:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3514:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3516:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3518:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3520:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3522:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3524:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3526:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3528:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3530:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3532:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3534:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3536:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3538:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3540:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3542:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3544:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3546:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.8/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:4980:9, inlined from ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’: pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.8/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:4366:9, inlined from ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’: pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.8/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.8 -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.8/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/pycbf_wrap.o build/temp.linux-x86_64-3.8/../src/cbf_simple.o -L../solib/ -L../lib/ -lcbf -o /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build/_pycbf.cpython-38-x86_64-linux-gnu.so I: pybuild base:217: /usr/bin/python3-dbg setup.py build running build running build_py copying pycbf.py -> /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build running build_ext building '_pycbf' extension creating build/temp.linux-x86_64-3.8-pydebug x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.8d -c pycbf_wrap.c -o build/temp.linux-x86_64-3.8-pydebug/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3512:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3514:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3516:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3518:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3520:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3522:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3524:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3526:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3528:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3530:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3532:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3534:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3536:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3538:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3540:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3542:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3544:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c:3546:13: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~~~~~~~~~~~~ ~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.8d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:4980:9, inlined from ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’: pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.8d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:4366:9, inlined from ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’: pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:495, from /usr/include/python3.8d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.8d -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.8-pydebug/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/pycbf_wrap.o build/temp.linux-x86_64-3.8-pydebug/../src/cbf_simple.o -L../solib/ -L../lib/ -lcbf -o /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build/_pycbf.cpython-38d-x86_64-linux-gnu.so make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' # install the C/C++ library dh_auto_install make -j1 install DESTDIR=/<>/cbflib-0.9.6\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' mkdir -p /<>/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cif2c mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:495, from /<>/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function ‘strncpy’, inlined from ‘main’ at /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testcell.C -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testcell mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib # # libcbf # chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod: cannot access '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1101: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.a cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1102: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a #-chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #-cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.so cp /<>/cbflib-0.9.6+dfsg1/solib/libcbf.so /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 ln -s -r -f /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1 ln -s -r -f /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #ln -s -f /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/lib_cbf.so chmod 644 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so # # includes # chmod -R 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod -R 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib rm -rf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old cp -r /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old rm -rf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib cp -r /<>/cbflib-0.9.6+dfsg1/include /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod 644 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib/*.h # # libfcb # # # libimg # # # programs # cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf': No such file or directory make[2]: [Makefile:1131: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/adscimg2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg': No such file or directory make[2]: [Makefile:1133: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cbf2adscimg /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers \ /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers': No such file or directory make[2]: [Makefile:1135: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image': No such file or directory make[2]: [Makefile:1137: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/convert_image /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf': No such file or directory make[2]: [Makefile:1139: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/convert_minicbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf': No such file or directory make[2]: [Makefile:1141: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/makecbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif': No such file or directory make[2]: [Makefile:1143: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/img2cif /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf': No such file or directory make[2]: [Makefile:1145: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cif2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus': No such file or directory make[2]: [Makefile:1147: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/minicbf2nexus /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus': No such file or directory make[2]: [Makefile:1149: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cbf2nexus /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf': No such file or directory make[2]: [Makefile:1151: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/nexus2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch': No such file or directory make[2]: [Makefile:1153: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/roi_peaksearch /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match': No such file or directory make[2]: [Makefile:1155: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/sequence_match /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc': No such file or directory make[2]: [Makefile:1157: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testalloc /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test': No such file or directory make[2]: [Makefile:1159: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/arvai_test /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c': No such file or directory make[2]: [Makefile:1161: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cif2c /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals': No such file or directory make[2]: [Makefile:1163: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testreals /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat': No such file or directory make[2]: [Makefile:1165: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testflat /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked': No such file or directory make[2]: [Makefile:1167: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testflatpacked /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked #-cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf_old #cp /<>/cbflib-0.9.6+dfsg1/bin/tiff2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk': No such file or directory make[2]: [Makefile:1171: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5': No such file or directory make[2]: [Makefile:1175: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testhdf5 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf_old.sh cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh': No such file or directory make[2]: [Makefile:1177: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' # install the python extension /usr/bin/make 'C++:=$(CXX)' /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' make[2]: '/<>/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_install --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf running install running build running build_py running build_ext running install_lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8 creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build/pycbf.py -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build/_pycbf.cpython-38-x86_64-linux-gnu.so -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages byte-compiling /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages/pycbf.py to pycbf.cpython-38.pyc running install_egg_info Writing /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages/_pycbf-0.0.0.egg-info I: pybuild base:217: /usr/bin/python3-dbg setup.py install --root /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg running install running build running build_py running build_ext running install_lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8 creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build/pycbf.py -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build/_pycbf.cpython-38d-x86_64-linux-gnu.so -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages byte-compiling /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages/pycbf.py to pycbf.cpython-38.pyc running install_egg_info Writing /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages/_pycbf-0.0.0.egg-info make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' # cbflib-bin dh_install -p cbflib-bin usr/bin/cbf2nexus dh_install -p cbflib-bin usr/bin/cif2cbf dh_install -p cbflib-bin usr/bin/convert_image dh_install -p cbflib-bin usr/bin/img2cif dh_install -p cbflib-bin usr/bin/makecbf # libcbf-dev dh_install -p libcbf-dev usr/include/cbflib/* dh_install -p libcbf-dev usr/lib/*/lib*.a dh_install -p libcbf-dev usr/lib/*/lib*.so # libcbf1 dh_install -p libcbf1 usr/lib/*/libcbf.so.* # Exclude duplicates (lintian check duplicate-files) dh_install -Xcif_img_1.3.2_22Jun05.html -Xcif_img_1.3.1.html make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' debian/rules override_dh_installdocs make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' # cbflib-doc dh_install -p cbflib-doc doc/*.html usr/share/doc/cbflib-doc/html dh_installdocs -p cbflib-doc html_graphics dh_installdocs: warning: Cannot auto-detect main package for cbflib-doc. If the default is wrong, please use --doc-main-package # libcbf-dev dh_installdocs -p libcbf-dev README dh_installdocs make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_installchangelogs -O--no-parallel debian/rules override_dh_installman make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' dh_installman -p cbflib-bin debian/manpages/* make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_python3 -O--no-parallel dh_installinit -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_missing: warning: usr/bin/testflatpacked exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/roi_peaksearch exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/arvai_test exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/minicbf2nexus exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/nexus2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/convert_minicbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testalloc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk_old exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testreals exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflat exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/batch_convert_minicbf.sh exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cif2c exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testhdf5 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf2adscimg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/adscimg2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/sequence_match exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf_standardize_numbers exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: cbflib-bin (5), cbflib-doc (230), libcbf-dev (37), libcbf1 (2), python3-pycbf (0), python3-pycbf-dbg (0) * dh_installdocs: cbflib-bin (0), cbflib-doc (1), libcbf-dev (1), libcbf1 (0), python3-pycbf (0), python3-pycbf-dbg (0) * dh_installman: cbflib-bin (4), cbflib-doc (0), libcbf-dev (0), libcbf1 (0), python3-pycbf (0), python3-pycbf-dbg (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf-dbg/usr/lib/python3/dist-packages/_pycbf.cpython-38d-x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf/usr/lib/python3/dist-packages/_pycbf.cpython-38-x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: package python3-pycbf-dbg: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf-dbg: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libcbf-dev (in debian/libcbf-dev); do_strip: , oemstrip: pkgstriptranslations: processing cbflib-bin (in debian/cbflib-bin); do_strip: , oemstrip: pkgstriptranslations: processing python3-pycbf-dbgsym (in debian/.debhelper/python3-pycbf/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libcbf-dev/DEBIAN/control, package libcbf-dev, directory debian/libcbf-dev Searching for duplicated docs in dependency libcbf1... pkgstripfiles: processing control file: debian/cbflib-bin/DEBIAN/control, package cbflib-bin, directory debian/cbflib-bin pkgstripfiles: processing control file: debian/.debhelper/python3-pycbf/dbgsym-root/DEBIAN/control, package python3-pycbf-dbgsym, directory debian/.debhelper/python3-pycbf/dbgsym-root dpkg-deb: building package 'python3-pycbf-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-pycbf/python3-pycbf-dbgsym_0.9.6+dfsg1-2build1_amd64.deb'. symlinking changelog.Debian.gz in libcbf-dev to file in libcbf1 INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcbf-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcbf-dev' in '../libcbf-dev_0.9.6+dfsg1-2build1_amd64.deb'. Renaming python3-pycbf-dbgsym_0.9.6+dfsg1-2build1_amd64.deb to python3-pycbf-dbgsym_0.9.6+dfsg1-2build1_amd64.ddeb INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python3-pycbf-dbg (in debian/python3-pycbf-dbg); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-pycbf-dbg/DEBIAN/control, package python3-pycbf-dbg, directory debian/python3-pycbf-dbg INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libcbf1 (in debian/libcbf1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... pkgstripfiles: processing control file: debian/libcbf1/DEBIAN/control, package libcbf1, directory debian/libcbf1 INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcbf1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcbf1' in '../libcbf1_0.9.6+dfsg1-2build1_amd64.deb'. INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libcbf1-dbgsym (in debian/.debhelper/libcbf1/dbgsym-root); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package cbflib-bin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'cbflib-bin' in '../cbflib-bin_0.9.6+dfsg1-2build1_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libcbf1/dbgsym-root/DEBIAN/control, package libcbf1-dbgsym, directory debian/.debhelper/libcbf1/dbgsym-root dpkg-deb: building package 'libcbf1-dbgsym' in 'debian/.debhelper/scratch-space/build-libcbf1/libcbf1-dbgsym_0.9.6+dfsg1-2build1_amd64.deb'. Renaming libcbf1-dbgsym_0.9.6+dfsg1-2build1_amd64.deb to libcbf1-dbgsym_0.9.6+dfsg1-2build1_amd64.ddeb INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstriptranslations version 144 pkgstriptranslations: processing cbflib-bin-dbgsym (in debian/.debhelper/cbflib-bin/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... pkgstripfiles: processing control file: debian/.debhelper/cbflib-bin/dbgsym-root/DEBIAN/control, package cbflib-bin-dbgsym, directory debian/.debhelper/cbflib-bin/dbgsym-root dpkg-deb: building package 'cbflib-bin-dbgsym' in 'debian/.debhelper/scratch-space/build-cbflib-bin/cbflib-bin-dbgsym_0.9.6+dfsg1-2build1_amd64.deb'. INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... Renaming cbflib-bin-dbgsym_0.9.6+dfsg1-2build1_amd64.deb to cbflib-bin-dbgsym_0.9.6+dfsg1-2build1_amd64.ddeb INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python3-pycbf (in debian/python3-pycbf); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-pycbf/DEBIAN/control, package python3-pycbf, directory debian/python3-pycbf Searching for duplicated docs in dependency libcbf1... symlinking changelog.Debian.gz in python3-pycbf to file in libcbf1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pycbf ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pycbf' in '../python3-pycbf_0.9.6+dfsg1-2build1_amd64.deb'. Searching for duplicated docs in dependency python3-pycbf... symlinking changelog.Debian.gz in python3-pycbf-dbg to file in libcbf1 Searching for duplicated docs in dependency libcbf1... pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pycbf-dbg ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pycbf-dbg' in '../python3-pycbf-dbg_0.9.6+dfsg1-2build1_amd64.deb'. INFO: pkgstriptranslations version 144 pkgstriptranslations: processing cbflib-doc (in debian/cbflib-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/cbflib-doc/DEBIAN/control, package cbflib-doc, directory debian/cbflib-doc .. removing usr/share/doc/cbflib-doc/html/ChangeLog.html pkgstripfiles: Disabled PNG optimization for -doc package cbflib-doc (to save build time) dpkg-deb: building package 'cbflib-doc' in '../cbflib-doc_0.9.6+dfsg1-2build1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../cbflib_0.9.6+dfsg1-2build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200513-1006 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cbflib_0.9.6+dfsg1-2build1_amd64.changes: ----------------------------------------- Format: 1.8 Date: Wed, 13 May 2020 10:06:53 +0000 Source: cbflib Binary: cbflib-bin cbflib-doc libcbf-dev libcbf1 python3-pycbf python3-pycbf-dbg Architecture: amd64 all Version: 0.9.6+dfsg1-2build1 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: cbflib-bin - utilities to manipulate CBF files cbflib-doc - documentation for CBFlib libcbf-dev - development files for CBFlib libcbf1 - shared library supporting CBFlib python3-pycbf - Python modules for CBFLib -- Python3 python3-pycbf-dbg - Python modules for CBFLib -- Python3 (Debug) Changes: cbflib (0.9.6+dfsg1-2build1) groovy; 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cbflib Version: 0.9.6+dfsg1-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 2556 Depends: libcbf1 (= 0.9.6+dfsg1-2build1), libhdf5-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: development files for CBFlib CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. The CBFLIB API is loosely based on the CIFPARSE API for mmCIF files. CBFLIB does not perform any semantic integrity checks and simply provides functions to create, read, modify and write CBF binary data files and imgCIF ASCII data files. . This package contains libraries and header files for program development. drwxr-xr-x root/root 0 2020-05-13 10:06 ./ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/include/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/include/cbflib/ -rw-r--r-- root/root 72478 2020-05-13 10:06 ./usr/include/cbflib/cbf.h -rw-r--r-- root/root 19076 2020-05-13 10:06 ./usr/include/cbflib/cbf_airy_disk.h -rw-r--r-- root/root 17939 2020-05-13 10:06 ./usr/include/cbflib/cbf_alloc.h -rw-r--r-- root/root 18102 2020-05-13 10:06 ./usr/include/cbflib/cbf_ascii.h -rw-r--r-- root/root 21042 2020-05-13 10:06 ./usr/include/cbflib/cbf_binary.h -rw-r--r-- root/root 20826 2020-05-13 10:06 ./usr/include/cbflib/cbf_byte_offset.h -rw-r--r-- root/root 24266 2020-05-13 10:06 ./usr/include/cbflib/cbf_canonical.h -rw-r--r-- root/root 19954 2020-05-13 10:06 ./usr/include/cbflib/cbf_codes.h -rw-r--r-- root/root 20928 2020-05-13 10:06 ./usr/include/cbflib/cbf_compress.h -rw-r--r-- root/root 18820 2020-05-13 10:06 ./usr/include/cbflib/cbf_context.h -rw-r--r-- root/root 21743 2020-05-13 10:06 ./usr/include/cbflib/cbf_copy.h -rw-r--r-- root/root 23370 2020-05-13 10:06 ./usr/include/cbflib/cbf_file.h -rw-r--r-- root/root 9277 2020-05-13 10:06 ./usr/include/cbflib/cbf_getopt.h -rw-r--r-- root/root 74109 2020-05-13 10:06 ./usr/include/cbflib/cbf_hdf5.h -rw-r--r-- root/root 19495 2020-05-13 10:06 ./usr/include/cbflib/cbf_hdf5_filter.h -rw-r--r-- root/root 17604 2020-05-13 10:06 ./usr/include/cbflib/cbf_lex.h -rw-r--r-- root/root 17718 2020-05-13 10:06 ./usr/include/cbflib/cbf_minicbf_header.h -rw-r--r-- root/root 20856 2020-05-13 10:06 ./usr/include/cbflib/cbf_nibble_offset.h -rw-r--r-- root/root 20598 2020-05-13 10:06 ./usr/include/cbflib/cbf_packed.h -rw-r--r-- root/root 20803 2020-05-13 10:06 ./usr/include/cbflib/cbf_predictor.h -rw-r--r-- root/root 17785 2020-05-13 10:06 ./usr/include/cbflib/cbf_read_binary.h -rw-r--r-- root/root 20072 2020-05-13 10:06 ./usr/include/cbflib/cbf_read_mime.h -rw-r--r-- root/root 78061 2020-05-13 10:06 ./usr/include/cbflib/cbf_simple.h -rw-r--r-- root/root 18154 2020-05-13 10:06 ./usr/include/cbflib/cbf_string.h -rw-r--r-- root/root 2803 2020-05-13 10:06 ./usr/include/cbflib/cbf_stx.h -rw-r--r-- root/root 22471 2020-05-13 10:06 ./usr/include/cbflib/cbf_tree.h -rw-r--r-- root/root 2225 2020-05-13 10:06 ./usr/include/cbflib/cbf_ulp.h -rw-r--r-- root/root 20537 2020-05-13 10:06 ./usr/include/cbflib/cbf_uncompressed.h -rw-r--r-- root/root 18145 2020-05-13 10:06 ./usr/include/cbflib/cbf_write.h -rw-r--r-- root/root 17696 2020-05-13 10:06 ./usr/include/cbflib/cbf_write_binary.h -rw-r--r-- root/root 21535 2020-05-13 10:06 ./usr/include/cbflib/cbf_ws.h -rw-r--r-- root/root 123992 2020-05-13 10:06 ./usr/include/cbflib/cbff.h -rw-r--r-- root/root 1653 2020-05-13 10:06 ./usr/include/cbflib/global.h -rw-r--r-- root/root 4959 2020-05-13 10:06 ./usr/include/cbflib/img.h -rw-r--r-- root/root 1833 2020-05-13 10:06 ./usr/include/cbflib/md5.h drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 1689602 2020-05-13 10:06 ./usr/lib/x86_64-linux-gnu/libcbf.a lrwxrwxrwx root/root 0 2020-05-13 10:06 ./usr/lib/x86_64-linux-gnu/libcbf.so -> libcbf.so.1.0.0 drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/doc/libcbf-dev/ -rw-r--r-- root/root 6315 2020-04-16 10:29 ./usr/share/doc/libcbf-dev/README.gz lrwxrwxrwx root/root 0 2020-05-13 10:06 ./usr/share/doc/libcbf-dev/changelog.Debian.gz -> ../libcbf1/changelog.Debian.gz -rw-r--r-- root/root 13872 2020-04-20 18:16 ./usr/share/doc/libcbf-dev/copyright libcbf1_0.9.6+dfsg1-2build1_amd64.deb ------------------------------------- new debian package, version 2.0. size 325384 bytes: control archive=5344 bytes. 682 bytes, 18 lines control 217 bytes, 3 lines md5sums 34 bytes, 1 lines shlibs 38190 bytes, 1044 lines symbols 70 bytes, 2 lines triggers Package: libcbf1 Source: cbflib Version: 0.9.6+dfsg1-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 945 Depends: libc6 (>= 2.29), libhdf5-103-1 Section: libs Priority: optional Multi-Arch: same Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: shared library supporting CBFlib CBFlib is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. . This package contains the shared library. drwxr-xr-x root/root 0 2020-05-13 10:06 ./ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2020-05-13 10:06 ./usr/lib/x86_64-linux-gnu/libcbf.so.1 -> libcbf.so.1.0.0 -rw-r--r-- root/root 899360 2020-05-13 10:06 ./usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/doc/libcbf1/ -rw-r--r-- root/root 2447 2020-05-13 10:06 ./usr/share/doc/libcbf1/changelog.Debian.gz -rw-r--r-- root/root 13872 2020-04-20 18:16 ./usr/share/doc/libcbf1/copyright python3-pycbf-dbg_0.9.6+dfsg1-2build1_amd64.deb ----------------------------------------------- new debian package, version 2.0. size 130352 bytes: control archive=848 bytes. 786 bytes, 17 lines control 179 bytes, 2 lines md5sums Package: python3-pycbf-dbg Source: cbflib Version: 0.9.6+dfsg1-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 819 Depends: python3-pycbf (= 0.9.6+dfsg1-2build1), python3-dbg (<< 3.9), python3-dbg (>= 3.8~), libc6 (>= 2.14), libcbf1 (>= 0.9.5.18) Section: debug Priority: optional Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: Python modules for CBFLib -- Python3 (Debug) CBFlib is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. . This package contains the Python3 Debug module. drwxr-xr-x root/root 0 2020-05-13 10:06 ./ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/python3/dist-packages/ -rw-r--r-- root/root 811680 2020-05-13 10:06 ./usr/lib/python3/dist-packages/_pycbf.cpython-38d-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/doc/python3-pycbf-dbg/ lrwxrwxrwx root/root 0 2020-05-13 10:06 ./usr/share/doc/python3-pycbf-dbg/changelog.Debian.gz -> ../libcbf1/changelog.Debian.gz -rw-r--r-- root/root 13872 2020-04-20 18:16 ./usr/share/doc/python3-pycbf-dbg/copyright python3-pycbf_0.9.6+dfsg1-2build1_amd64.deb ------------------------------------------- new debian package, version 2.0. size 143992 bytes: control archive=1204 bytes. 736 bytes, 17 lines control 333 bytes, 4 lines md5sums 251 bytes, 12 lines * postinst #!/bin/sh 400 bytes, 12 lines * prerm #!/bin/sh Package: python3-pycbf Source: cbflib Version: 0.9.6+dfsg1-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 1243 Depends: python3 (<< 3.9), python3 (>= 3.8~), python3:any, libc6 (>= 2.14), libcbf1 (>= 0.9.5.18) Section: python Priority: optional Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: Python modules for CBFLib -- Python3 CBFlib is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. . This package contains the Python3 module. drwxr-xr-x root/root 0 2020-05-13 10:06 ./ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/lib/python3/dist-packages/ -rw-r--r-- root/root 180 2020-05-13 10:06 ./usr/lib/python3/dist-packages/_pycbf-0.0.0.egg-info -rw-r--r-- root/root 799520 2020-05-13 10:06 ./usr/lib/python3/dist-packages/_pycbf.cpython-38-x86_64-linux-gnu.so -rw-r--r-- root/root 443246 2020-04-16 10:29 ./usr/lib/python3/dist-packages/pycbf.py drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-05-13 10:06 ./usr/share/doc/python3-pycbf/ lrwxrwxrwx root/root 0 2020-05-13 10:06 ./usr/share/doc/python3-pycbf/changelog.Debian.gz -> ../libcbf1/changelog.Debian.gz -rw-r--r-- root/root 13872 2020-04-20 18:16 ./usr/share/doc/python3-pycbf/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 261260 Build-Time: 171 Distribution: groovy-proposed Host Architecture: amd64 Install-Time: 33 Job: cbflib_0.9.6+dfsg1-2build1.dsc Machine Architecture: amd64 Package: cbflib Package-Time: 205 Source-Version: 0.9.6+dfsg1-2build1 Space: 261260 Status: successful Version: 0.9.6+dfsg1-2build1 -------------------------------------------------------------------------------- Finished at 20200513-1006 Build needed 00:03:25, 261260k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=amd64 PACKAGEBUILD-19297191 Scanning for processes to kill in build PACKAGEBUILD-19297191