https://launchpad.net/ubuntu/+source/cbflib/0.9.6+dfsg1-2build2/+build/20181037 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-007 4.15.0-121-generic #123-Ubuntu SMP Mon Oct 5 16:16:40 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_193~468~ubuntu18.04.1 python3-lpbuildd_193~468~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.7 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 24 Oct 09:55:54 ntpdate[1743]: adjust time server 10.211.37.1 offset 0.001567 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20181037 --image-type chroot /home/buildd/filecache-default/720a8366e1260e086c1691fe6381a3f2b1c21d81 Creating target for build PACKAGEBUILD-20181037 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20181037 Starting target for build PACKAGEBUILD-20181037 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20181037 'deb http://ftpmaster.internal/ubuntu hirsute main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-security main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-updates main universe' 'deb http://ftpmaster.internal/ubuntu hirsute-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-20181037 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20181037 Updating target for build PACKAGEBUILD-20181037 Get:1 http://ftpmaster.internal/ubuntu hirsute InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-security InRelease [88.4 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute-updates InRelease [88.4 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute-proposed InRelease [106 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute/main amd64 Packages [1378 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main Translation-en [507 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/universe amd64 Packages [12.6 MB] Get:8 http://ftpmaster.internal/ubuntu hirsute/universe Translation-en [5262 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 Packages [25.4 kB] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main Translation-en [6320 B] Get:11 http://ftpmaster.internal/ubuntu hirsute-proposed/universe amd64 Packages [102 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute-proposed/universe Translation-en [45.4 kB] Fetched 20.5 MB in 7s (2931 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files tzdata 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 353 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 base-files amd64 11ubuntu15 [60.5 kB] Get:2 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 tzdata all 2020d-1ubuntu1 [293 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 353 kB in 0s (18.5 MB/s) (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu15_amd64.deb ... Unpacking base-files (11ubuntu15) over (11ubuntu14) ... Setting up base-files (11ubuntu15) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../tzdata_2020d-1ubuntu1_all.deb ... Unpacking tzdata (2020d-1ubuntu1) over (2020b-1ubuntu1) ... Setting up tzdata (2020d-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 24 09:56:24 UTC 2020. Universal Time is now: Sat Oct 24 09:56:24 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-20181037 amd64 hirsute-proposed -c chroot:build-PACKAGEBUILD-20181037 --arch=amd64 --dist=hirsute-proposed --nolog -A cbflib_0.9.6+dfsg1-2build2.dsc Initiating build PACKAGEBUILD-20181037 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-121-generic #123-Ubuntu SMP Mon Oct 5 16:16:40 UTC 2020 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lcy01-amd64-007.buildd +==============================================================================+ | cbflib 0.9.6+dfsg1-2build2 (amd64) Sat, 24 Oct 2020 09:56:25 +0000 | +==============================================================================+ Package: cbflib Version: 0.9.6+dfsg1-2build2 Source Version: 0.9.6+dfsg1-2build2 Distribution: hirsute-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-20181037/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- cbflib_0.9.6+dfsg1-2build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/cbflib-FfxGlu/cbflib-0.9.6+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/cbflib-FfxGlu' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-FyQVCc/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-FyQVCc/apt_archive ./ InRelease Get:2 copy:/<>/resolver-FyQVCc/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-FyQVCc/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-FyQVCc/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-FyQVCc/apt_archive ./ Packages [432 B] Fetched 1738 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-FyQVCc/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), dh-python, libhdf5-dev, pkg-config, python3-all-dbg, python3-all-dev Filtered Build-Depends: debhelper-compat (= 12), dh-python, libhdf5-dev, pkg-config, python3-all-dbg, python3-all-dev dpkg-deb: building package 'sbuild-build-depends-cbflib-dummy' in '/<>/resolver-FyQVCc/apt_archive/sbuild-build-depends-cbflib-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-cbflib-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-FyQVCc/apt_archive ./ InRelease Get:2 copy:/<>/resolver-FyQVCc/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-FyQVCc/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-FyQVCc/apt_archive ./ Sources [527 B] Get:5 copy:/<>/resolver-FyQVCc/apt_archive ./ Packages [608 B] Fetched 2098 B in 0s (201 kB/s) Reading package lists... Reading package lists... Install cbflib build dependencies (apt-based resolver) ------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libpipeline1 libpython3-all-dbg libpython3-all-dev libpython3-dbg libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dbg libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libpython3.9 libpython3.9-dbg libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support pkg-config po-debconf python3 python3-all python3-all-dbg python3-all-dev python3-dbg python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-dbg python3.8-dev python3.8-minimal python3.9 python3.9-dbg python3.9-dev python3.9-minimal zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc python3-gdbm-dbg python3-tk-dbg binfmt-support python3.9-venv python3.9-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl gdb The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libmagic-mgc libmagic1 libpipeline1 libpython3-all-dbg libpython3-all-dev libpython3-dbg libpython3-dev libpython3-stdlib libpython3.8 libpython3.8-dbg libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libpython3.9 libpython3.9-dbg libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsub-override-perl libsz2 libtool libuchardet0 libxml2 m4 man-db mime-support pkg-config po-debconf python3 python3-all python3-all-dbg python3-all-dev python3-dbg python3-dev python3-distutils python3-lib2to3 python3-minimal python3.8 python3.8-dbg python3.8-dev python3.8-minimal python3.9 python3.9-dbg python3.9-dev python3.9-minimal sbuild-build-depends-cbflib-dummy zlib1g-dev 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 112 MB of archives. After this operation, 414 MB of additional disk space will be used. Get:1 copy:/<>/resolver-FyQVCc/apt_archive ./ sbuild-build-depends-cbflib-dummy 0.invalid.0 [900 B] Get:2 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.8-minimal amd64 3.8.6-1 [715 kB] Get:3 http://ftpmaster.internal/ubuntu hirsute/main amd64 libexpat1 amd64 2.2.9-1build1 [73.3 kB] Get:4 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3.8-minimal amd64 3.8.6-1 [1821 kB] Get:5 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-minimal amd64 3.8.6-1 [24.1 kB] Get:6 http://ftpmaster.internal/ubuntu hirsute/main amd64 mime-support all 3.64ubuntu1 [30.6 kB] Get:7 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.8-stdlib amd64 3.8.6-1 [1724 kB] Get:8 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3.8 amd64 3.8.6-1 [376 kB] Get:9 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpython3-stdlib amd64 3.8.6-1 [7416 B] Get:10 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3 amd64 3.8.6-1 [48.8 kB] Get:11 http://ftpmaster.internal/ubuntu hirsute/main amd64 bsdextrautils amd64 2.36-3ubuntu1 [77.5 kB] Get:12 http://ftpmaster.internal/ubuntu hirsute/main amd64 libuchardet0 amd64 0.0.7-1 [68.0 kB] Get:13 http://ftpmaster.internal/ubuntu hirsute/main amd64 groff-base amd64 1.22.4-5 [847 kB] Get:14 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpipeline1 amd64 1.5.3-1 [27.8 kB] Get:15 http://ftpmaster.internal/ubuntu hirsute/main amd64 man-db amd64 2.9.3-2 [1117 kB] Get:16 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libpython3.9-minimal amd64 3.9.0-5 [751 kB] Get:17 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3.9-minimal amd64 3.9.0-5 [1909 kB] Get:18 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic-mgc amd64 1:5.38-5 [218 kB] Get:19 http://ftpmaster.internal/ubuntu hirsute/main amd64 libmagic1 amd64 1:5.38-5 [76.0 kB] Get:20 http://ftpmaster.internal/ubuntu hirsute/main amd64 file amd64 1:5.38-5 [23.3 kB] Get:21 http://ftpmaster.internal/ubuntu hirsute/main amd64 libelf1 amd64 0.181-1 [44.3 kB] Get:22 http://ftpmaster.internal/ubuntu hirsute/main amd64 libglib2.0-0 amd64 2.66.1-2 [1304 kB] Get:23 http://ftpmaster.internal/ubuntu hirsute/main amd64 libicu67 amd64 67.1-4 [8620 kB] Get:24 http://ftpmaster.internal/ubuntu hirsute/main amd64 libxml2 amd64 2.9.10+dfsg-5build1 [623 kB] Get:25 http://ftpmaster.internal/ubuntu hirsute/main amd64 gettext-base amd64 0.19.8.1-10build1 [50.2 kB] Get:26 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsigsegv2 amd64 2.12-2build1 [13.9 kB] Get:27 http://ftpmaster.internal/ubuntu hirsute/main amd64 m4 amd64 1.4.18-4 [199 kB] Get:28 http://ftpmaster.internal/ubuntu hirsute/main amd64 autoconf all 2.69-11.1 [321 kB] Get:29 http://ftpmaster.internal/ubuntu hirsute/main amd64 autotools-dev all 20180224.1 [39.6 kB] Get:30 http://ftpmaster.internal/ubuntu hirsute/main amd64 automake all 1:1.16.2-4ubuntu1 [548 kB] Get:31 http://ftpmaster.internal/ubuntu hirsute/main amd64 autopoint all 0.19.8.1-10build1 [412 kB] Get:32 http://ftpmaster.internal/ubuntu hirsute/main amd64 libtool all 2.4.6-14 [161 kB] Get:33 http://ftpmaster.internal/ubuntu hirsute/main amd64 dh-autoreconf all 19 [16.1 kB] Get:34 http://ftpmaster.internal/ubuntu hirsute/main amd64 libdebhelper-perl all 13.2.1ubuntu1 [63.6 kB] Get:35 http://ftpmaster.internal/ubuntu hirsute/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:36 http://ftpmaster.internal/ubuntu hirsute/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:37 http://ftpmaster.internal/ubuntu hirsute/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [17.2 kB] Get:38 http://ftpmaster.internal/ubuntu hirsute/main amd64 dh-strip-nondeterminism all 1.9.0-1 [5192 B] Get:39 http://ftpmaster.internal/ubuntu hirsute/main amd64 dwz amd64 0.13-5 [151 kB] Get:40 http://ftpmaster.internal/ubuntu hirsute/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] Get:41 http://ftpmaster.internal/ubuntu hirsute/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] Get:42 http://ftpmaster.internal/ubuntu hirsute/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:43 http://ftpmaster.internal/ubuntu hirsute/main amd64 po-debconf all 1.0.21 [233 kB] Get:44 http://ftpmaster.internal/ubuntu hirsute/main amd64 debhelper all 13.2.1ubuntu1 [879 kB] Get:45 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-lib2to3 all 3.8.6-1 [75.5 kB] Get:46 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3-distutils all 3.8.6-1 [141 kB] Get:47 http://ftpmaster.internal/ubuntu hirsute/universe amd64 dh-python all 4.20200925 [92.2 kB] Get:48 http://ftpmaster.internal/ubuntu hirsute/universe amd64 hdf5-helpers amd64 1.10.6+repack-2 [13.7 kB] Get:49 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] Get:50 http://ftpmaster.internal/ubuntu hirsute/main amd64 libexpat1-dev amd64 2.2.9-1build1 [116 kB] Get:51 http://ftpmaster.internal/ubuntu hirsute/main amd64 libgfortran5 amd64 10.2.0-13ubuntu1 [735 kB] Get:52 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] Get:53 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhdf5-103-1 amd64 1.10.6+repack-2 [1155 kB] Get:54 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhdf5-cpp-103-1 amd64 1.10.6+repack-2 [117 kB] Get:55 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhdf5-fortran-102 amd64 1.10.6+repack-2 [74.1 kB] Get:56 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhdf5-hl-100 amd64 1.10.6+repack-2 [54.0 kB] Get:57 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.6+repack-2 [27.8 kB] Get:58 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.6+repack-2 [9976 B] Get:59 http://ftpmaster.internal/ubuntu hirsute/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2ubuntu4 [156 kB] Get:60 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg-turbo8 amd64 2.0.3-0ubuntu2 [118 kB] Get:61 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg-turbo8-dev amd64 2.0.3-0ubuntu2 [238 kB] Get:62 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:63 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:64 http://ftpmaster.internal/ubuntu hirsute/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:65 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] Get:66 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libhdf5-dev amd64 1.10.6+repack-2 [2427 kB] Get:67 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.8 amd64 3.8.6-1 [1610 kB] Get:68 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.8-dev amd64 3.8.6-1 [3849 kB] Get:69 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpython3-dev amd64 3.8.6-1 [7576 B] Get:70 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libpython3.9-stdlib amd64 3.9.0-5 [1752 kB] Get:71 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libpython3.9 amd64 3.9.0-5 [1690 kB] Get:72 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libpython3.9-dev amd64 3.9.0-5 [4033 kB] Get:73 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpython3-all-dev amd64 3.8.6-1 [1120 B] Get:74 http://ftpmaster.internal/ubuntu hirsute/main amd64 libpython3.8-dbg amd64 3.8.6-1 [13.2 MB] Get:75 http://ftpmaster.internal/ubuntu hirsute/universe amd64 libpython3.9-dbg amd64 3.9.0-5 [15.2 MB] Get:76 http://ftpmaster.internal/ubuntu hirsute/main amd64 pkg-config amd64 0.29.2-1ubuntu1 [46.2 kB] Get:77 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3.9 amd64 3.9.0-5 [408 kB] Get:78 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-all amd64 3.8.6-1 [1112 B] Get:79 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpython3-dbg amd64 3.8.6-1 [7568 B] Get:80 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 libpython3-all-dbg amd64 3.8.6-1 [1116 B] Get:81 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3.8-dbg amd64 3.8.6-1 [18.4 MB] Get:82 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-dbg amd64 3.8.6-1 [1276 B] Get:83 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3.9-dbg amd64 3.9.0-5 [20.7 MB] Get:84 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-all-dbg amd64 3.8.6-1 [1124 B] Get:85 http://ftpmaster.internal/ubuntu hirsute/main amd64 python3.8-dev amd64 3.8.6-1 [515 kB] Get:86 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-dev amd64 3.8.6-1 [1208 B] Get:87 http://ftpmaster.internal/ubuntu hirsute/universe amd64 python3.9-dev amd64 3.9.0-5 [513 kB] Get:88 http://ftpmaster.internal/ubuntu hirsute-proposed/main amd64 python3-all-dev amd64 3.8.6-1 [1120 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 112 MB in 2s (53.9 MB/s) Selecting previously unselected package libpython3.8-minimal:amd64. (Reading database ... 12980 files and directories currently installed.) Preparing to unpack .../libpython3.8-minimal_3.8.6-1_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.6-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.2.9-1build1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1build1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../python3.8-minimal_3.8.6-1_amd64.deb ... Unpacking python3.8-minimal (3.8.6-1) ... Setting up libpython3.8-minimal:amd64 (3.8.6-1) ... Setting up libexpat1:amd64 (2.2.9-1build1) ... Setting up python3.8-minimal (3.8.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13271 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.8.6-1_amd64.deb ... Unpacking python3-minimal (3.8.6-1) ... Selecting previously unselected package mime-support. 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Setting up python3.9 (3.9.0-5) ... Setting up libhdf5-hl-100:amd64 (1.10.6+repack-2) ... Setting up automake (1:1.16.2-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.6-1) ... Setting up dh-python (4.20200925) ... Setting up python3.8-dbg (3.8.6-1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libjpeg-dev:amd64 (8c-2ubuntu8) ... Setting up libpython3.9-dev:amd64 (3.9.0-5) ... Setting up python3-all (3.8.6-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3.9-dbg (3.9.0-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libhdf5-hl-cpp-100:amd64 (1.10.6+repack-2) ... Setting up libpython3.8-dev:amd64 (3.8.6-1) ... Setting up libhdf5-fortran-102:amd64 (1.10.6+repack-2) ... Setting up python3.8-dev (3.8.6-1) ... Setting up python3.9-dev (3.9.0-5) ... Setting up libhdf5-hl-fortran-100:amd64 (1.10.6+repack-2) ... Setting up python3-dbg (3.8.6-1) ... Setting up libpython3-dev:amd64 (3.8.6-1) ... Setting up po-debconf (1.0.21) ... Setting up libpython3-all-dev:amd64 (3.8.6-1) ... Setting up python3-dev (3.8.6-1) ... Setting up libhdf5-dev (1.10.6+repack-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-all-dbg (3.8.6-1) ... Setting up python3-all-dev (3.8.6-1) ... Setting up debhelper (13.2.1ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-cbflib-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.32-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-121-generic amd64 (x86_64) Toolchain package versions: binutils_2.35.1-1ubuntu1 dpkg-dev_1.20.5ubuntu2 g++-10_10.2.0-13ubuntu1 gcc-10_10.2.0-13ubuntu1 libc6-dev_2.32-0ubuntu3 libstdc++-10-dev_10.2.0-13ubuntu1 libstdc++6_10.2.0-13ubuntu1 linux-libc-dev_5.8.0-25.26 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-4ubuntu1 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu15 base-passwd_3.5.47 bash_5.0-6ubuntu2 binutils_2.35.1-1ubuntu1 binutils-common_2.35.1-1ubuntu1 binutils-x86-64-linux-gnu_2.35.1-1ubuntu1 bsdextrautils_2.36-3ubuntu1 bsdutils_1:2.36-3ubuntu1 build-essential_12.8ubuntu3 bzip2_1.0.8-4ubuntu2 ca-certificates_20200601 coreutils_8.32-3ubuntu1 cpp_4:10.2.0-1ubuntu1 cpp-10_10.2.0-13ubuntu1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2.1ubuntu1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20200925 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3ubuntu1 dpkg_1.20.5ubuntu2 dpkg-dev_1.20.5ubuntu2 dwz_0.13-5 e2fsprogs_1.45.6-1ubuntu1 fakeroot_1.25.2-1 file_1:5.38-5 findutils_4.7.0-1ubuntu2 g++_4:10.2.0-1ubuntu1 g++-10_10.2.0-13ubuntu1 gcc_4:10.2.0-1ubuntu1 gcc-10_10.2.0-13ubuntu1 gcc-10-base_10.2.0-13ubuntu1 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.20-1ubuntu1 gpg-agent_2.2.20-1ubuntu1 gpgconf_2.2.20-1ubuntu1 gpgv_2.2.20-1ubuntu1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2ubuntu1 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init_1.58 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapparmor1_3.0.0-0ubuntu1 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build20.10.0 libasan6_10.2.0-13ubuntu1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-13ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3ubuntu1 libaudit1_1:2.8.5-3ubuntu1 libbinutils_2.35.1-1ubuntu1 libblkid1_2.36-3ubuntu1 libbz2-1.0_1.0.8-4ubuntu2 libc-bin_2.32-0ubuntu3 libc-dev-bin_2.32-0ubuntu3 libc6_2.32-0ubuntu3 libc6-dev_2.32-0ubuntu3 libcap-ng0_0.7.9-2.2 libcap2_1:2.43-1 libcc1-0_10.2.0-13ubuntu1 libcom-err2_1.45.6-1ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1ubuntu1 libcrypt1_1:4.4.16-1ubuntu1 libcryptsetup12_2:2.3.3-1ubuntu6 libctf-nobfd0_2.35.1-1ubuntu1 libctf0_2.35.1-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu3 libdebconfclient0_0.252ubuntu1 libdebhelper-perl_13.2.1ubuntu1 libdevmapper1.02.1_2:1.02.167-1ubuntu3 libdpkg-perl_1.20.5ubuntu2 libelf1_0.181-1 libexpat1_2.2.9-1build1 libexpat1-dev_2.2.9-1build1 libext2fs2_1.45.6-1ubuntu1 libfakeroot_1.25.2-1 libffi8ubuntu1_3.4~20200819gead65ca871-0ubuntu3 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-13ubuntu1 libgcc-s1_10.2.0-13ubuntu1 libgcrypt20_1.8.5-5ubuntu2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgfortran5_10.2.0-13ubuntu1 libglib2.0-0_2.66.1-2 libgmp10_2:6.2.0+dfsg-6ubuntu1 libgnutls30_3.6.15-4ubuntu2 libgomp1_10.2.0-13ubuntu1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.17-10 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libip4tc2_1.8.5-3ubuntu1 libisl22_0.22.1-1 libitm1_10.2.0-13ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.3-0ubuntu2 libjpeg-turbo8-dev_2.0.3-0ubuntu2 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjson-c5_0.15-1 libk5crypto3_1.17-10 libkeyutils1_1.6.1-2ubuntu1 libkmod2_27+20200310-2ubuntu1 libkrb5-3_1.17-10 libkrb5support0_1.17-10 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10.2.0-13ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1ubuntu1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3ubuntu1 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle8_3.6-2 libnpth0_1.6-2 libnsl-dev_1.3.0-0ubuntu3 libnsl2_1.3.0-0ubuntu3 libnss-nis_3.1-0ubuntu4 libnss-nisplus_1.3-0ubuntu4 libp11-kit0_0.23.21-2build1 libpam-modules_1.3.1-5ubuntu6 libpam-modules-bin_1.3.1-5ubuntu6 libpam-runtime_1.3.1-5ubuntu6 libpam0g_1.3.1-5ubuntu6 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libprocps8_2:3.3.16-5ubuntu2 libpython3-all-dbg_3.8.6-1 libpython3-all-dev_3.8.6-1 libpython3-dbg_3.8.6-1 libpython3-dev_3.8.6-1 libpython3-stdlib_3.8.6-1 libpython3.8_3.8.6-1 libpython3.8-dbg_3.8.6-1 libpython3.8-dev_3.8.6-1 libpython3.8-minimal_3.8.6-1 libpython3.8-stdlib_3.8.6-1 libpython3.9_3.9.0-5 libpython3.9-dbg_3.9.0-5 libpython3.9-dev_3.9.0-5 libpython3.9-minimal_3.9.0-5 libpython3.9-stdlib_3.9.0-5 libquadmath0_10.2.0-13ubuntu1 libreadline8_8.0-4 libseccomp2_2.4.3-1ubuntu4 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2build1 libsmartcols1_2.36-3ubuntu1 libsqlite3-0_3.33.0-1 libss2_1.45.6-1ubuntu1 libssl1.1_1.1.1f-1ubuntu4 libstdc++-10-dev_10.2.0-13ubuntu1 libstdc++6_10.2.0-13ubuntu1 libsub-override-perl_0.09-2 libsystemd0_246.6-1ubuntu1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtirpc-common_1.2.6-1build1 libtirpc-dev_1.2.6-1build1 libtirpc3_1.2.6-1build1 libtool_2.4.6-14 libtsan0_10.2.0-13ubuntu1 libubsan1_10.2.0-13ubuntu1 libuchardet0_0.0.7-1 libudev1_246.6-1ubuntu1 libunistring2_0.9.10-4 libuuid1_2.36-3ubuntu1 libxml2_2.9.10+dfsg-5build1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.0-25.26 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu6 logsave_1.45.6-1ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.3-4ubuntu1 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mime-support_3.64ubuntu1 mount_2.36-3ubuntu1 ncurses-base_6.2-1 ncurses-bin_6.2-1 openssl_1.1.1f-1ubuntu4 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu6 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.30_5.30.3-4 pinentry-curses_1.1.0-4build1 pkg-config_0.29.2-1ubuntu1 pkgbinarymangler_146 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-5ubuntu2 python3_3.8.6-1 python3-all_3.8.6-1 python3-all-dbg_3.8.6-1 python3-all-dev_3.8.6-1 python3-dbg_3.8.6-1 python3-dev_3.8.6-1 python3-distutils_3.8.6-1 python3-lib2to3_3.8.6-1 python3-minimal_3.8.6-1 python3.8_3.8.6-1 python3.8-dbg_3.8.6-1 python3.8-dev_3.8.6-1 python3.8-minimal_3.8.6-1 python3.9_3.9.0-5 python3.9-dbg_3.9.0-5 python3.9-dev_3.9.0-5 python3.9-minimal_3.9.0-5 readline-common_8.0-4 rpcsvc-proto_1.4.2-0ubuntu4 sbuild-build-depends-cbflib-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1ubuntu1 sensible-utils_0.0.13 systemd_246.6-1ubuntu1 systemd-sysv_246.6-1ubuntu1 systemd-timesyncd_246.6-1ubuntu1 sysvinit-utils_2.96-3ubuntu1 tar_1.30+dfsg-7 tzdata_2020d-1ubuntu1 ubuntu-keyring_2020.06.17.1 util-linux_2.36-3ubuntu1 xz-utils_5.2.4-1ubuntu1 zlib1g_1:1.2.11.dfsg-2ubuntu4 zlib1g-dev_1:1.2.11.dfsg-2ubuntu4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Oct 24 09:28:12 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cbflib_0.9.6+dfsg1-2build2.dsc dpkg-source: info: extracting cbflib in /<>/cbflib-0.9.6+dfsg1 dpkg-source: info: unpacking cbflib_0.9.6+dfsg1.orig.tar.xz dpkg-source: info: unpacking cbflib_0.9.6+dfsg1-2build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-makefile-fix-Get-system-HDF5-config-from-pkg-config.patch dpkg-source: info: applying 0002-makefile-fix-Fix-CBFLIB_DONT_USE_LOCAL_TIFF-config-v.patch dpkg-source: info: applying 0003-makefile-fix-Allow-disabling-PyCBF-from-env-with-NOP.patch dpkg-source: info: applying 0004-makefile-fix-Install-libs-to-CBF_PREFIX-INSTALL_LIB.patch dpkg-source: info: applying 0005-makefile-fix-Install-lib-to-SOVERSION-and-add-symlin.patch dpkg-source: info: applying 0006-makefile-fix-Allow-disabling-libimg-and-libfcb-build.patch dpkg-source: info: applying 0007-trailing-spaces.patch dpkg-source: info: applying 0007-makefile-fix-Do-not-link-example-progs-w.-libimg.patch dpkg-source: info: applying 0008-makefile-fix-Add-SONAME-to-linker-flags.patch dpkg-source: info: applying 0009-makefile-fix-Pick-up-CFLAGS-and-LDFLAGS-from-the-env.patch dpkg-source: info: applying 0010-makefile-fix-Prepend-CPPFLAGS-value-to-CFLAGS.patch dpkg-source: info: applying 0011-makefile-fix-Add-LDFLAGS-to-SOLDFLAGS-to-pick-up-har.patch dpkg-source: info: applying 0013-makefile-deb-Use-DESTDIR-usr-as-CBF_PREFIX.patch dpkg-source: info: applying 0014-makefile-deb-Do-not-build-tiff2cbf.patch dpkg-source: info: applying 0016-cross.patch dpkg-source: info: applying 0016-add-missing-LdFLAG-to-cbf_testxfelread.patch dpkg-source: info: applying 0017-Added-an-extra_compile_args-to-setup.py.patch dpkg-source: info: applying 0018-fix-the-FTBFS-with-missing-m4-Makefile.m4.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-20181037 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-20181037 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-20181037 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package cbflib dpkg-buildpackage: info: source version 0.9.6+dfsg1-2build2 dpkg-buildpackage: info: source distribution hirsute dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_clean make -j1 distclean make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' ./.undosymlinks make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' /usr/bin/make 'C++:=$(CXX)' /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/lib -Dhdf5_prefix= -Dextra_compile_args=-I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_clean --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:217: python3.9 setup.py clean running clean removing '/<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it I: pybuild base:217: python3.8 setup.py clean running clean removing '/<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it I: pybuild base:217: python3.9-dbg setup.py clean running clean removing '/<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it I: pybuild base:217: python3.8-dbg setup.py clean running clean removing '/<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it rm -f pycbf/setup.py make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --with python3 --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_configure /usr/bin/make 'C++:=$(CXX)' /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' (m4 -P -Dregexlib= -Dregexlib2= \ -Dregexlibdir=/lib -Dhdf5_prefix= -Dextra_compile_args=-I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/m4/setup_py.m4 > /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py) make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_configure --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:217: python3.9 setup.py config running config I: pybuild base:217: python3.8 setup.py config running config I: pybuild base:217: python3.9-dbg setup.py config running config I: pybuild base:217: python3.8-dbg setup.py config running config make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' # build the C/C++ library dh_auto_build -- 'C++:=$(CXX)' all make -j1 "INSTALL=install --strip-program=true" C\+\+:=\$\(CXX\) all make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_exit_binary.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_exit_binary.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_next_binary.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_next_binary.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_open_cifin.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_open_cifin.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_packed.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_packed.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_bits.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_read_bits.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_image.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_read_image.f90 (cd /<>/cbflib-0.9.6+dfsg1/m4; m4 -P -Dfcb_bytes_in_rec=131072 fcb_read_xds_i2.m4) > /<>/cbflib-0.9.6+dfsg1/src/fcb_read_xds_i2.f90 chmod a+x .symlinks chmod a+x .undosymlinks chmod a+x doc/.symlinks chmod a+x doc/.undosymlinks ./.symlinks --use_ln touch symlinksdone rm -f /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /<>/cbflib-0.9.6+dfsg1/lib gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX \ -DCBF_FILTER_STATIC -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /<>/cbflib-0.9.6+dfsg1/src/cbf.c /<>/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /<>/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /<>/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /<>/cbflib-0.9.6+dfsg1/src/cbf_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /<>/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /<>/cbflib-0.9.6+dfsg1/src/cbf_codes.c /<>/cbflib-0.9.6+dfsg1/src/cbf_compress.c /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c /<>/cbflib-0.9.6+dfsg1/src/cbf_copy.c /<>/cbflib-0.9.6+dfsg1/src/cbf_file.c /<>/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /<>/cbflib-0.9.6+dfsg1/src/cbf_lex.c /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /<>/cbflib-0.9.6+dfsg1/src/cbf_packed.c /<>/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /<>/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c /<>/cbflib-0.9.6+dfsg1/src/cbf_string.c /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c /<>/cbflib-0.9.6+dfsg1/src/cbf_tree.c /<>/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /<>/cbflib-0.9.6+dfsg1/src/cbf_write.c /<>/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_ws.c /<>/cbflib-0.9.6+dfsg1/src/cbff.c /<>/cbflib-0.9.6+dfsg1/src/md5c.c /<>/cbflib-0.9.6+dfsg1/src/img.c /<>/cbflib-0.9.6+dfsg1/src/fgetln.c /<>/cbflib-0.9.6+dfsg1/src/cbf.c: In function ‘cbf_convert_dictionary_definition’: /<>/cbflib-0.9.6+dfsg1/src/cbf.c:5474:22: warning: ‘itemname’ may be used uninitialized in this function [-Wmaybe-uninitialized] 5474 | cbf_failnez( cbf_set_hashedvalue (cbfdictionary, itemname, "name", -1)) | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function ‘strncpy’, inlined from ‘cbf_validate’ at /<>/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘cbf_validate’ at /<>/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfcat_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function ‘cbf_read_h5file_group’; did you mean ‘cbf_read_h5file’? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable ‘indent’ [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfdb_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable ‘indent’ [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__entry_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable ‘indent’ [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable ‘node’ set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable ‘data_row’ set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable ‘diffrn_scan_axis’ set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__array_structure_list_axis’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable ‘rotation_axis_path’ [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__cbf_general_axes’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable ‘equipment_component’ [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__axis’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable ‘axis_rotation_axis’ set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_h5ds_store_as_column’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable ‘close’ [-Wunused-variable] 29166 | char open, close; | ^~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable ‘open’ [-Wunused-variable] 29166 | char open, close; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable ‘type_order’ set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable ‘byte_order’ [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable ‘buffer’ [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_object_visit’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable ‘checked_digest’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable ‘atcbf’ set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable ‘atnexus’ [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_read_h5file_group’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable ‘errorcode’ [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable ‘node’ [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: ‘cbf_write_nx2cbf__cbfdb_op’ defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: ‘cbf_write_nx2cbf__cbfcat_op’ defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: ‘cbf_require_nxdetectors’ defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_get_nxdata_field_name2.isra’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: ‘%06d’ directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 11 bytes into a destination of size 7 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:137:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:137:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:137:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:137:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23197:42: warning: ‘offset[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23197 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[2])); | ^~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23195:42: warning: ‘offset[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23195 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[1])); | ^~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:23193:42: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized] 23193 | CBF_CALL(cbf_set_doublevalue(cbf,"%.15g",offset[0])); | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string.part.0’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from ‘cbf_append_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from ‘cbf_set_minicbf_header’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function ‘cbf_compress_nibble_offset’: /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: ‘dmode[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function ‘cbf_lex_wrapper’: /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable ‘cbffile’ set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: ‘yytname’ defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /<>/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /<>/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/src/img.c:12: In function ‘memcpy’, inlined from ‘img_set_tags’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from ‘img_set_tags’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from ‘img_free_handle’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:34:10: warning: ‘__builtin___memcpy_chk’ writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_free_handle’: /<>/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: at offset 0 to an object with size 0 allocated by ‘malloc’ here 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ar cr /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a *.o /usr/bin/ranlib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a rm -f *.o mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/adscimg2cbf In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:245:27: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 245 | strstrhit = cbf_cistrnstr(argv[iarg], flags[j], strlen(flags[j])); | ^ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:176:10: warning: unused variable ‘thickness’ [-Wunused-variable] 176 | double thickness=0.; | ^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:162:7: warning: variable ‘cbf_status’ set but not used [-Wunused-but-set-variable] 162 | int cbf_status; | ^~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:13: In function ‘strncpy’, inlined from ‘gethd.constprop’ at /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:31:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c: In function ‘gethd.constprop’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf.c:28:7: note: length computed here 28 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub2’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:793:20: warning: passing argument 1 of ‘convertroi’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 793 | if (convertroi(roi, smv_size1, smv_size2, | ^~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:433:22: note: expected ‘char *’ but argument is of type ‘const char *’ 433 | int convertroi(char *roi, int fastdim, int slowdim, | ~~~~~~^~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1727:27: warning: passing argument 1 of ‘cbf_free_text’ from incompatible pointer type [-Wincompatible-pointer-types] 1727 | cbf_free_text(&log,NULL); | ^~~~ | | | char ** In file included from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:262, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: /<>/cbflib-0.9.6+dfsg1/include/cbf_alloc.h:274:33: note: expected ‘const char **’ but argument is of type ‘char **’ 274 | int cbf_free_text (const char **old_block, size_t *old_nelem); | ~~~~~~~~~~~~~^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:30: warning: variable ‘valmax’ set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1868:16: warning: variable ‘valnew’ set but not used [-Wunused-but-set-variable] 1868 | double valnew,valmin,valmax; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:27: warning: unused variable ‘kjcm’ [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:530:21: warning: unused variable ‘kicm’ [-Wunused-variable] 530 | int ki, kj, kicm, kjcm; | ^~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:522:28: warning: variable ‘smv_bin_type’ set but not used [-Wunused-but-set-variable] 522 | int smv_bin, smv_adc, smv_bin_type; | ^~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:2075:34: warning: passing argument 4 of ‘adscimg2cbf_sub2’ makes integer from pointer without a cast [-Wint-conversion] 2075 | NULL,NULL,NULL,NULL, | ^~~~ | | | void * /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:481:29: note: expected ‘size_t’ {aka ‘long unsigned int’} but argument is of type ‘void *’ 481 | size_t old_int_data_size, | ~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:179: In function ‘strncpy’, inlined from ‘gethd.constprop’ at /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:263:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘gethd.constprop’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:260:7: note: length computed here 260 | l = strlen (field); | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c: In function ‘adscimg2cbf_sub2’: /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:588:29: warning: ‘; ’ directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 588 | sprintf(temp, "%s=%s;\n", s, s1); | ^~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:177: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 1027) into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/adscimg2cbf_sub.c:1846:53: warning: ‘smooth_data_as_int’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1846 | if (ki > 0 && smooth_data_as_int[(ki-1)*(1+fasthigh-fastlow+fastpadlow+fastpadhigh)/(bin+1)+kj] > 0) { | ^ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/arvai_test.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/arvai_test mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cbf2adscimg In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:1: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:3: In function ‘strncpy’, inlined from ‘gethd’ at /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:21:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c: In function ‘gethd’: /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg.c:18:7: note: length computed here 18 | l = strlen (field); | ^~~~~~~~~~~~~~ In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:126: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function ‘padhd’: /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:217:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 217 | for ( hp=header; *hp != '}'; hp++); hp++; | ^~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c: In function ‘cbfhandle2img_sub’: /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:57: warning: variable ‘dirinc’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:46: warning: variable ‘dirend’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:35: warning: variable ‘dirsta’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:28: warning: variable ‘second’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:21: warning: variable ‘first’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf2adscimg_sub.c:247:13: warning: variable ‘colrow’ set but not used [-Wunused-but-set-variable] 247 | int i, k, colrow, first, second,dirsta[2], dirend[2], dirinc[2]; | ^~~~~~ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cbf2nexus.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cbf2nexus mkdir -p /<>/cbflib-0.9.6+dfsg1/bin g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cif2c bash: g: command not found make[2]: [Makefile:1771: /<>/cbflib-0.9.6+dfsg1/bin/cif2c] Error 127 (ignored) rm -f /<>/cbflib-0.9.6+dfsg1/solib/libcbf.so rm -f *.o mkdir -p /<>/cbflib-0.9.6+dfsg1/solib gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -DCBF_REGEXLIB_REGEX -fPIC -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial -c /<>/cbflib-0.9.6+dfsg1/src/cbf.c /<>/cbflib-0.9.6+dfsg1/src/cbf_airy_disk.c /<>/cbflib-0.9.6+dfsg1/src/cbf_alloc.c /<>/cbflib-0.9.6+dfsg1/src/cbf_ascii.c /<>/cbflib-0.9.6+dfsg1/src/cbf_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_byte_offset.c /<>/cbflib-0.9.6+dfsg1/src/cbf_canonical.c /<>/cbflib-0.9.6+dfsg1/src/cbf_codes.c /<>/cbflib-0.9.6+dfsg1/src/cbf_compress.c /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c /<>/cbflib-0.9.6+dfsg1/src/cbf_copy.c /<>/cbflib-0.9.6+dfsg1/src/cbf_file.c /<>/cbflib-0.9.6+dfsg1/src/cbf_getopt.c /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5_filter.c /<>/cbflib-0.9.6+dfsg1/src/cbf_lex.c /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c /<>/cbflib-0.9.6+dfsg1/src/cbf_packed.c /<>/cbflib-0.9.6+dfsg1/src/cbf_predictor.c /<>/cbflib-0.9.6+dfsg1/src/cbf_read_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_read_mime.c /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c /<>/cbflib-0.9.6+dfsg1/src/cbf_string.c /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c /<>/cbflib-0.9.6+dfsg1/src/cbf_tree.c /<>/cbflib-0.9.6+dfsg1/src/cbf_uncompressed.c /<>/cbflib-0.9.6+dfsg1/src/cbf_write.c /<>/cbflib-0.9.6+dfsg1/src/cbf_write_binary.c /<>/cbflib-0.9.6+dfsg1/src/cbf_ws.c /<>/cbflib-0.9.6+dfsg1/src/cbff.c /<>/cbflib-0.9.6+dfsg1/src/md5c.c /<>/cbflib-0.9.6+dfsg1/src/img.c /<>/cbflib-0.9.6+dfsg1/src/fgetln.c In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/src/cbf.c:266: In function ‘strncpy’, inlined from ‘cbf_validate’ at /<>/cbflib-0.9.6+dfsg1/src/cbf.c:7605:6: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncpy’, inlined from ‘cbf_validate’ at /<>/cbflib-0.9.6+dfsg1/src/cbf.c:7686:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:937:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:262: In function ‘strncpy’, inlined from ‘cbf_copy_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:922:21: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c: In function ‘cbf_copy_string’: /<>/cbflib-0.9.6+dfsg1/src/cbf_context.c:909:13: note: length computed here 909 | n = strlen(string); | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfcat_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20819:38: warning: implicit declaration of function ‘cbf_read_h5file_group’; did you mean ‘cbf_read_h5file’? [-Wimplicit-function-declaration] 20819 | error |= cbf_read_h5file_group(cbf,nx,nx->flags,(hid_t)object); | ^~~~~~~~~~~~~~~~~~~~~ | cbf_read_h5file /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20811:48: warning: unused variable ‘indent’ [-Wunused-variable] 20811 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20784:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20784 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__cbfdb_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20933:48: warning: unused variable ‘indent’ [-Wunused-variable] 20933 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20906:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 20906 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf__entry_op’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21797:48: warning: unused variable ‘indent’ [-Wunused-variable] 21797 | const unsigned int indent = table->indent; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:21716:31: warning: unused variable ‘nxpdb_found’ [-Wunused-variable] 21716 | const int nxpdb_found = _cbf_Attrval(object,"NXpdb_class", &NXpdb_class); | ^~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_nx2cbf’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22516:36: warning: variable ‘node’ set but not used [-Wunused-but-set-variable] 22516 | cbf_node * node = NULL; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22769:85: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22769 | if (pixel_offset_name[i]) free((void*)pixel_offset_name[i]);pixel_offset_name[i]=NULL; | ^~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22770:95: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22770 | if (pixel_offset_long_name[i]) free((void*)pixel_offset_long_name[i]);pixel_offset_long_name[i]=NULL; | ^~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:25: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22771:81: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 22771 | if (pixel_size_name[i]) free((void*)pixel_size_name[i]);pixel_size_name[i]=NULL; | ^~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22110:30: warning: variable ‘data_row’ set but not used [-Wunused-but-set-variable] 22110 | unsigned int data_row = ~0x0; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:22836:32: warning: variable ‘diffrn_scan_axis’ set but not used [-Wunused-but-set-variable] 22836 | cbf_node * diffrn_scan_axis = NULL; | ^~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__array_structure_list_axis’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26493:50: warning: unused variable ‘rotation_axis_path’ [-Wunused-variable] 26493 | const char * rotation_axis_path = NULL; | ^~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__cbf_general_axes’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:26704:26: warning: unused variable ‘equipment_component’ [-Wunused-variable] 26704 | const char * equipment_component = NULL; | ^~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_write_cbf2nx__axis’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:27034:28: warning: variable ‘axis_rotation_axis’ set but not used [-Wunused-but-set-variable] 27034 | cbf_node * axis_rotation_axis = NULL; | ^~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_h5ds_store_as_column’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:40: warning: unused variable ‘close’ [-Wunused-variable] 29166 | char open, close; | ^~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:29166:34: warning: unused variable ‘open’ [-Wunused-variable] 29166 | char open, close; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28931:21: warning: variable ‘type_order’ set but not used [-Wunused-but-set-variable] 28931 | H5T_order_t type_order; | ^~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28925:16: warning: unused variable ‘byte_order’ [-Wunused-variable] 28925 | char * byte_order; | ^~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:28903:14: warning: unused variable ‘buffer’ [-Wunused-variable] 28903 | char buffer[25]; | ^~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_object_visit’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:42: warning: variable ‘checked_digest’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30752:36: warning: variable ‘type’ set but not used [-Wunused-but-set-variable] 30752 | int binary_id, bits, sign, type, checked_digest, realarray = 0; | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30708:32: warning: variable ‘atcbf’ set but not used [-Wunused-but-set-variable] 30708 | int save_incbf, incbf, atcbf; /* within or at NXpdb or CBF_cif, etc. */ | ^~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:30707:36: warning: unused variable ‘atnexus’ [-Wunused-variable] 30707 | int save_innexus, innexus, atnexus; /* within or at NXentry */ | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_read_h5file_group’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31937:13: warning: unused variable ‘errorcode’ [-Wunused-variable] 31937 | int errorcode = 0; | ^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:31933:19: warning: unused variable ‘node’ [-Wunused-variable] 31933 | cbf_node *node; | ^~~~ At top level: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20853:16: warning: ‘cbf_write_nx2cbf__cbfdb_op’ defined but not used [-Wunused-function] 20853 | static int cbf_write_nx2cbf__cbfdb_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:20641:16: warning: ‘cbf_write_nx2cbf__cbfcat_op’ defined but not used [-Wunused-function] 20641 | static int cbf_write_nx2cbf__cbfcat_op | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:9133:16: warning: ‘cbf_require_nxdetectors’ defined but not used [-Wunused-function] 9133 | static int cbf_require_nxdetectors(const cbf_handle handle, | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c: In function ‘cbf_get_nxdata_field_name2.isra’: /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:37: warning: ‘%06d’ directive writing between 6 and 10 bytes into a region of size 7 [-Wformat-overflow=] 6345 | sprintf(buffer,"%06d",block); | ^~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:6345:36: note: directive argument in the range [1, 2147483647] 6345 | sprintf(buffer,"%06d",block); | ^~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:258: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 7 and 11 bytes into a destination of size 7 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:260: In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17932:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:137:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:17934:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:137:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18014:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:137:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 10 bytes from a string of length 11 [-Wstringop-truncation] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘strncat’, inlined from ‘cbf_create_h5handle2u’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_hdf5.c:18016:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:137:10: warning: ‘__builtin___strncat_chk’ output may be truncated copying 50 bytes from a string of length 53 [-Wstringop-truncation] 137 | return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string.part.0’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c: In function ‘cbf_append_string.part.0’: /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:302:18: note: length computed here 302 | srclen = strlen(src); | ^~~~~~~~~~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_minicbf_header.h:264, from /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:259: In function ‘strncpy’, inlined from ‘cbf_append_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:325:9, inlined from ‘cbf_append_string’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:293:16, inlined from ‘cbf_set_minicbf_header’ at /<>/cbflib-0.9.6+dfsg1/src/cbf_minicbf_header.c:429:13: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 1 byte from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c: In function ‘cbf_compress_nibble_offset’: /<>/cbflib-0.9.6+dfsg1/src/cbf_nibble_offset.c:936:21: warning: ‘dmode[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized] 936 | curmode = dmode[inrun]; | ~~~~~~~~^~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c: In function ‘cbf_lex_wrapper’: /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c:370:13: warning: variable ‘cbffile’ set but not used [-Wunused-but-set-variable] 370 | cbf_file *cbffile; | ^~~~~~~ At top level: /<>/cbflib-0.9.6+dfsg1/src/cbf_stx.c:827:26: warning: ‘yytname’ defined but not used [-Wunused-const-variable=] 827 | static const char *const yytname[] = | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /<>/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /<>/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ gcc -o /<>/cbflib-0.9.6+dfsg1/solib/libcbf.so *.o -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname -Wl,libcbf.so.1 -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 rm -f *.o mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function ‘strncpy’, inlined from ‘main’ at /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -D_SVID_SOURCE -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c /<>/cbflib-0.9.6+dfsg1/src/fgetln.c -lm -o /<>/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers In file included from /usr/include/hdf5/serial/H5public.h:35, from /usr/include/hdf5/serial/hdf5.h:22, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~ /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:60:20: note: directive argument in the range [0, 2147483647] 60 | sprintf(format,"%%.%dg ",(digits>0)?digits+1:0); | ^~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/hdf5/serial/H5Epublic.h:20, from /usr/include/hdf5/serial/hdf5.h:26, from /<>/cbflib-0.9.6+dfsg1/include/cbf.h:253, from /<>/cbflib-0.9.6+dfsg1/examples/cbf_standardize_numbers.c:9: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 6 and 15 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/cbflib-0.9.6+dfsg1/src/fgetln.c:30: /usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] 187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" | ^~~~~~~ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/convert_image.c /<>/cbflib-0.9.6+dfsg1/src/img.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/convert_image /<>/cbflib-0.9.6+dfsg1/examples/convert_image.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/convert_image.c:533:7: warning: variable ‘transpose’ set but not used [-Wunused-but-set-variable] 533 | int transpose; | ^~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_read_mar345header’: /<>/cbflib-0.9.6+dfsg1/src/img.c:1334:44: warning: array subscript -1 is outside array bounds of ‘char[65]’ [-Warray-bounds] 1334 | for (C = C64+strlen(C64)-1; (C != C64-1 && *C == ' '); C-- ) *C = '\0'; | ~~~^~ /<>/cbflib-0.9.6+dfsg1/src/img.c:1230:8: note: while referencing ‘C64’ 1230 | char C64[65], D64[65], *C, *D, *E; | ^~~ In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/src/img.c:12: In function ‘memcpy’, inlined from ‘img_set_tags’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1784:7, inlined from ‘img_set_tags’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1761:5, inlined from ‘img_free_handle’ at /<>/cbflib-0.9.6+dfsg1/src/img.c:1844:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:34:10: warning: ‘__builtin___memcpy_chk’ writing between 18446744039349813248 and 18446744073709551600 bytes into a region of size 0 [-Wstringop-overflow=] 34 | return __builtin___memcpy_chk (__dest, __src, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/src/img.c: In function ‘img_free_handle’: /<>/cbflib-0.9.6+dfsg1/src/img.c:1773:28: note: at offset 0 to an object with size 0 allocated by ‘malloc’ here 1773 | img->tag = (img_tag *) malloc (tags * sizeof (img_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: /tmp/ccPU83A9.o: in function `main': ././examples/convert_image.c:672: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/convert_minicbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/convert_minicbf chmod 755 /<>/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/img2cif.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/img2cif gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/makecbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/makecbf gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/minicbf2nexus.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/minicbf2nexus mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/nexus2cbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/nexus2cbf mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/roi_peaksearch.c /<>/cbflib-0.9.6+dfsg1/examples/dps_peaksearch.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/roi_peaksearch mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/sequence_match.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/sequence_match mkdir -p /<>/cbflib-0.9.6+dfsg1/bin g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testcell.C -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testcell bash: g: command not found make[2]: [Makefile:1762: /<>/cbflib-0.9.6+dfsg1/bin/testcell] Error 127 (ignored) mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /<>/cbflib-0.9.6+dfsg1/examples/testalloc.c -L/<>/cbflib-0.9.6+dfsg1/lib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /<>/cbflib-0.9.6+dfsg1/bin/testalloc.tmp mv /<>/cbflib-0.9.6+dfsg1/bin/testalloc.tmp /<>/cbflib-0.9.6+dfsg1/bin/testalloc mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testreals.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testreals mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testflat.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testflat mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testflatpacked.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testflatpacked mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testhdf5.c -L/<>/cbflib-0.9.6+dfsg1/lib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp mv /<>/cbflib-0.9.6+dfsg1/bin/testhdf5.tmp /<>/cbflib-0.9.6+dfsg1/bin/testhdf5 mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /<>/cbflib-0.9.6+dfsg1/examples/test_cbf_airy_disk.c -L/<>/cbflib-0.9.6+dfsg1/lib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp mv /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk.tmp /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial /<>/cbflib-0.9.6+dfsg1/examples/cbf_testxfelread.c -L/<>/cbflib-0.9.6+dfsg1/lib /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a -lm -o /<>/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp mv /<>/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread.tmp /<>/cbflib-0.9.6+dfsg1/bin/cbf_testxfelread make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' # build the python extension. /usr/bin/make 'C++:=$(CXX)' /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' make[2]: '/<>/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_build --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:217: /usr/bin/python3.9 setup.py build running build running build_py copying pycbf.py -> /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build running build_ext building '_pycbf' extension creating build creating build/src creating build/temp.linux-x86_64-3.9 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.9 -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.9/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.9 -c pycbf_wrap.c -o build/temp.linux-x86_64-3.9/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:4980:9, inlined from ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’: pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:4366:9, inlined from ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’: pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/../src/cbf_simple.o build/temp.linux-x86_64-3.9/pycbf_wrap.o -L../solib/ -L../lib/ -lcbf -o /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-x86_64-linux-gnu.so I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py copying pycbf.py -> /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build running build_ext building '_pycbf' extension creating build/temp.linux-x86_64-3.8 x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.8 -c pycbf_wrap.c -o build/temp.linux-x86_64-3.8/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.8/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:4980:9, inlined from ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’: pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.8/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:4366:9, inlined from ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’: pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.8/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.8 -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.8/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/pycbf_wrap.o build/temp.linux-x86_64-3.8/../src/cbf_simple.o -L../solib/ -L../lib/ -lcbf -o /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build/_pycbf.cpython-38-x86_64-linux-gnu.so I: pybuild base:217: /usr/bin/python3.9-dbg setup.py build running build running build_py copying pycbf.py -> /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build running build_ext building '_pycbf' extension creating build/temp.linux-x86_64-3.9-pydebug x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.9d -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.9-pydebug/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.9d -c pycbf_wrap.c -o build/temp.linux-x86_64-3.9-pydebug/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.9d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:4980:9, inlined from ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’: pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:4366:9, inlined from ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’: pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.9d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9-pydebug/../src/cbf_simple.o build/temp.linux-x86_64-3.9-pydebug/pycbf_wrap.o -L../solib/ -L../lib/ -lcbf -o /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/_pycbf.cpython-39d-x86_64-linux-gnu.so I: pybuild base:217: /usr/bin/python3-dbg setup.py build running build running build_py copying pycbf.py -> /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build running build_ext building '_pycbf' extension creating build/temp.linux-x86_64-3.8-pydebug x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.8d -c pycbf_wrap.c -o build/temp.linux-x86_64-3.8-pydebug/pycbf_wrap.o -I/usr/include/hdf5/serial pycbf_wrap.c: In function ‘cbf_handle_struct_set_image’: pycbf_wrap.c:4074:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4074 | void *array; | ^~~~~ pycbf_wrap.c:4072:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4072 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims’: pycbf_wrap.c:4289:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4289 | void *array; | ^~~~~ pycbf_wrap.c:4288:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c:4288:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4288 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_fs’: pycbf_wrap.c:4383:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4383 | void *array; | ^~~~~ pycbf_wrap.c:4381:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4381 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_sf’: pycbf_wrap.c:4418:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4418 | void *array; | ^~~~~ pycbf_wrap.c:4416:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4416 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_fs’: pycbf_wrap.c:4460:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4460 | void *array; | ^~~~~ pycbf_wrap.c:4458:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4458 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image’: pycbf_wrap.c:4611:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4611 | void *array; | ^~~~~ pycbf_wrap.c:4609:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4609 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_sf’: pycbf_wrap.c:4634:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4634 | void *array; | ^~~~~ pycbf_wrap.c:4633:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c:4633:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4633 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image’: pycbf_wrap.c:4782:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4782 | void *array; | ^~~~~ pycbf_wrap.c:4780:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4780 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims’: pycbf_wrap.c:4832:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4832 | void *array; | ^~~~~ pycbf_wrap.c:4831:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c:4831:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4831 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_fs’: pycbf_wrap.c:4908:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 4908 | void *array; | ^~~~~ pycbf_wrap.c:4906:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 4906 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image_sf’: pycbf_wrap.c:5004:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5004 | void *array; | ^~~~~ pycbf_wrap.c:5002:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5002 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_sf’: pycbf_wrap.c:5060:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5060 | void *array; | ^~~~~ pycbf_wrap.c:5059:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c:5059:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5059 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_image’: pycbf_wrap.c:5091:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5091 | void *array; | ^~~~~ pycbf_wrap.c:5089:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5089 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_3d_image_sf’: pycbf_wrap.c:5147:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5147 | void *array; | ^~~~~ pycbf_wrap.c:5145:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5145 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray’: pycbf_wrap.c:5223:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5223 | void *array; | ^~~~~ pycbf_wrap.c:5222:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c:5222:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5222 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray’: pycbf_wrap.c:5295:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5295 | void *array; | ^~~~~ pycbf_wrap.c:5294:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c:5294:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5294 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_real_3d_image_fs’: pycbf_wrap.c:5380:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5380 | void *array; | ^~~~~ pycbf_wrap.c:5378:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5378 | size_t els; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_realarray_wdims_fs’: pycbf_wrap.c:5422:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5422 | void *array; | ^~~~~ pycbf_wrap.c:5421:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c:5421:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5421 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_integerarray_wdims_fs’: pycbf_wrap.c:5447:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5447 | void *array; | ^~~~~ pycbf_wrap.c:5446:21: warning: variable ‘ele’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c:5446:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5446 | size_t els, ele; | ^~~ pycbf_wrap.c: In function ‘cbf_handle_struct_set_image_sf’: pycbf_wrap.c:5468:15: warning: variable ‘array’ set but not used [-Wunused-but-set-variable] 5468 | void *array; | ^~~~~ pycbf_wrap.c:5466:16: warning: variable ‘els’ set but not used [-Wunused-but-set-variable] 5466 | size_t els; | ^~~ At top level: pycbf_wrap.c:3469:16: warning: ‘convert_iarray’ defined but not used [-Wunused-function] 3469 | static int convert_iarray(PyObject *input, int *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c:3445:17: warning: ‘convert_larray’ defined but not used [-Wunused-function] 3445 | static long convert_larray(PyObject *input, long *ptr, int size) { | ^~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘get_error_message’: pycbf_wrap.c:3510:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3510 | sprintf(error_message,"%s %s",error_message,"CBF_FORMAT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3512:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3512 | sprintf(error_message,"%s %s",error_message,"CBF_ALLOC "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3514:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3514 | sprintf(error_message,"%s %s",error_message,"CBF_ARGUMENT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3516:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3516 | sprintf(error_message,"%s %s",error_message,"CBF_ASCII "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3518:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3518 | sprintf(error_message,"%s %s",error_message,"CBF_BINARY "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3520:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3520 | sprintf(error_message,"%s %s",error_message,"CBF_BITCOUNT "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3522:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3522 | sprintf(error_message,"%s %s",error_message,"CBF_ENDOFDATA "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3524:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3524 | sprintf(error_message,"%s %s",error_message,"CBF_FILECLOSE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3526:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3526 | sprintf(error_message,"%s %s",error_message,"CBF_FILEOPEN "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3528:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3528 | sprintf(error_message,"%s %s",error_message,"CBF_FILEREAD "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3530:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3530 | sprintf(error_message,"%s %s",error_message,"CBF_FILESEEK "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3532:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3532 | sprintf(error_message,"%s %s",error_message,"CBF_FILETELL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3534:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3534 | sprintf(error_message,"%s %s",error_message,"CBF_FILEWRITE "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3536:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3536 | sprintf(error_message,"%s %s",error_message,"CBF_IDENTICAL "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3538:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3538 | sprintf(error_message,"%s %s",error_message,"CBF_NOTFOUND "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3540:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3540 | sprintf(error_message,"%s %s",error_message,"CBF_OVERFLOW "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3542:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3542 | sprintf(error_message,"%s %s",error_message,"CBF_UNDEFINED "); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3544:31: warning: ‘%s’ directive writing 18 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3544 | sprintf(error_message,"%s %s",error_message,"CBF_NOTIMPLEMENTED"); | ^~ ~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 20 and 1043 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c:3546:31: warning: ‘%s’ directive writing 17 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 3546 | sprintf(error_message,"%s %s",error_message,"CBF_NOCOMPRESSION"); | ^~ ~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/python3.8d/Python.h:25, from pycbf_wrap.c:149: /usr/include/x86_64-linux-gnu/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 19 and 1042 bytes into a destination of size 1024 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.8d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:4980:9, inlined from ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’ at pycbf_wrap.c:16981:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_integerarrayparameters_wdims_sf’: pycbf_wrap.c:4978:18: note: length computed here 4978 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.8d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:4366:9, inlined from ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’ at pycbf_wrap.c:12615:5: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pycbf_wrap.c: In function ‘_wrap_cbf_handle_struct_get_realarrayparameters_wdims_sf’: pycbf_wrap.c:4364:18: note: length computed here 4364 | *bolen = strlen(byteorder); | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/string.h:519, from /usr/include/python3.8d/Python.h:30, from pycbf_wrap.c:149: In function ‘strncpy’, inlined from ‘SWIG_Python_FixMethods’ at pycbf_wrap.c:29493:15, inlined from ‘PyInit__pycbf’ at pycbf_wrap.c:29593:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 10 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -g -Og -Wall -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -Og -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I/include -I/usr/include/python3.8d -c ../src/cbf_simple.c -o build/temp.linux-x86_64-3.8-pydebug/../src/cbf_simple.o -I/usr/include/hdf5/serial ../src/cbf_simple.c: In function ‘cbf_set_reference_beam_center’: ../src/cbf_simple.c:8587:44: warning: variable ‘ncenter2’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ ../src/cbf_simple.c:8587:34: warning: variable ‘ncenter1’ set but not used [-Wunused-but-set-variable] 8587 | double nindex1, nindex2, ncenter1, ncenter2; | ^~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8-pydebug/pycbf_wrap.o build/temp.linux-x86_64-3.8-pydebug/../src/cbf_simple.o -L../solib/ -L../lib/ -lcbf -o /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build/_pycbf.cpython-38d-x86_64-linux-gnu.so make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' # install the C/C++ library dh_auto_install make -j1 install DESTDIR=/<>/cbflib-0.9.6\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' mkdir -p /<>/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cif2c.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cif2c mkdir -p /<>/cbflib-0.9.6+dfsg1/bin gcc -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/cif2cbf In file included from /usr/include/string.h:519, from /<>/cbflib-0.9.6+dfsg1/include/cbf_hdf5.h:265, from /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:465: In function ‘strncpy’, inlined from ‘main’ at /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2015:25: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c: In function ‘main’: /<>/cbflib-0.9.6+dfsg1/examples/cif2cbf.c:2012:28: note: length computed here 2012 | dbsz = strlen(datablock_name+idb); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p /<>/cbflib-0.9.6+dfsg1/bin g++ -g -O2 -fdebug-prefix-map=/<>/cbflib-0.9.6+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -D_USE_XOPEN_EXTENDED -fno-strict-aliasing -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DCBF_REGEXLIB_REGEX -I/<>/cbflib-0.9.6+dfsg1/include -I/<>/cbflib-0.9.6+dfsg1/src -I/usr/include/hdf5/serial \ /<>/cbflib-0.9.6+dfsg1/examples/testcell.C -L/<>/cbflib-0.9.6+dfsg1/lib \ -lcbf -lm -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /<>/cbflib-0.9.6+dfsg1/bin/testcell mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include mkdir -p /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib # # libcbf # chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod: cannot access '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1101: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.a cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a': No such file or directory make[2]: [Makefile:1102: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/lib/libcbf.a /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a #-chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #-cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf_old.so cp /<>/cbflib-0.9.6+dfsg1/solib/libcbf.so /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 ln -s -r -f /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1 ln -s -r -f /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so #ln -s -f /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/lib_cbf.so chmod 644 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.a chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libcbf.so # # includes # chmod -R 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod -R 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib rm -rf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old cp -r /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib_old rm -rf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib cp -r /<>/cbflib-0.9.6+dfsg1/include /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib chmod 644 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/include/cbflib/*.h # # libfcb # # # libimg # # # programs # cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf': No such file or directory make[2]: [Makefile:1131: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/adscimg2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/adscimg2cbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg': No such file or directory make[2]: [Makefile:1133: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cbf2adscimg /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2adscimg cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers \ /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers': No such file or directory make[2]: [Makefile:1135: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cbf_standardize_numbers /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image': No such file or directory make[2]: [Makefile:1137: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/convert_image /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf': No such file or directory make[2]: [Makefile:1139: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/convert_minicbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf': No such file or directory make[2]: [Makefile:1141: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/makecbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif': No such file or directory make[2]: [Makefile:1143: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/img2cif /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf': No such file or directory make[2]: [Makefile:1145: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cif2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus': No such file or directory make[2]: [Makefile:1147: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/minicbf2nexus /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus': No such file or directory make[2]: [Makefile:1149: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cbf2nexus /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf': No such file or directory make[2]: [Makefile:1151: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/nexus2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch': No such file or directory make[2]: [Makefile:1153: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/roi_peaksearch /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match': No such file or directory make[2]: [Makefile:1155: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/sequence_match /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc': No such file or directory make[2]: [Makefile:1157: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testalloc /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test': No such file or directory make[2]: [Makefile:1159: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/arvai_test /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c': No such file or directory make[2]: [Makefile:1161: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/cif2c /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals': No such file or directory make[2]: [Makefile:1163: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testreals /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat': No such file or directory make[2]: [Makefile:1165: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testflat /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked': No such file or directory make[2]: [Makefile:1167: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testflatpacked /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked #-cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf_old #cp /<>/cbflib-0.9.6+dfsg1/bin/tiff2cbf /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/tiff2cbf cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk': No such file or directory make[2]: [Makefile:1171: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk_old cp /<>/cbflib-0.9.6+dfsg1/bin/test_cbf_airy_disk /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5_old cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5': No such file or directory make[2]: [Makefile:1175: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/bin/testhdf5 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 cp /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf_old.sh cp: cannot stat '/<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh': No such file or directory make[2]: [Makefile:1177: baseinstall] Error 1 (ignored) cp /<>/cbflib-0.9.6+dfsg1/examples/batch_convert_minicbf.sh /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/arvai_test chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf2nexus chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cbf_standardize_numbers chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2c chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/cif2cbf chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_image chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/convert_minicbf chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/img2cif chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/makecbf chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/minicbf2nexus chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/nexus2cbf chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/roi_peaksearch chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/sequence_match chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testalloc chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflat chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testflatpacked chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testhdf5 chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/testreals chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/test_cbf_airy_disk chmod 755 /<>/cbflib-0.9.6+dfsg1/debian/tmp/usr/bin/batch_convert_minicbf.sh make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' # install the python extension /usr/bin/make 'C++:=$(CXX)' /<>/cbflib-0.9.6+dfsg1/pycbf/setup.py make[2]: Entering directory '/<>/cbflib-0.9.6+dfsg1' make[2]: '/<>/cbflib-0.9.6+dfsg1/pycbf/setup.py' is up to date. make[2]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_auto_install --buildsystem=pybuild --sourcedirectory=pycbf I: pybuild base:217: /usr/bin/python3.9 setup.py install --root /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf running install running build running build_py running build_ext running install_lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9 creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/pycbf.py -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_pycbf/build/_pycbf.cpython-39-x86_64-linux-gnu.so -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages byte-compiling /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/pycbf.py to pycbf.cpython-39.pyc running install_egg_info Writing /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.9/dist-packages/_pycbf-0.0.0.egg-info I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf running install running build running build_py running build_ext running install_lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8 creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build/pycbf.py -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_pycbf/build/_pycbf.cpython-38-x86_64-linux-gnu.so -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages byte-compiling /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages/pycbf.py to pycbf.cpython-38.pyc running install_egg_info Writing /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf/usr/lib/python3.8/dist-packages/_pycbf-0.0.0.egg-info I: pybuild base:217: /usr/bin/python3.9-dbg setup.py install --root /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg running install running build running build_py running build_ext running install_lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9 creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/_pycbf.cpython-39d-x86_64-linux-gnu.so -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.9_dbg_pycbf/build/pycbf.py -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages byte-compiling /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages/pycbf.py to pycbf.cpython-39.pyc running install_egg_info Writing /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.9/dist-packages/_pycbf-0.0.0.egg-info I: pybuild base:217: /usr/bin/python3-dbg setup.py install --root /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg running install running build running build_py running build_ext running install_lib creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8 creating /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build/pycbf.py -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages copying /<>/cbflib-0.9.6+dfsg1/.pybuild/cpython3_3.8_dbg_pycbf/build/_pycbf.cpython-38d-x86_64-linux-gnu.so -> /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages byte-compiling /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages/pycbf.py to pycbf.cpython-38.pyc running install_egg_info Writing /<>/cbflib-0.9.6+dfsg1/debian/python3-pycbf-dbg/usr/lib/python3.8/dist-packages/_pycbf-0.0.0.egg-info make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' debian/rules override_dh_install make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' # cbflib-bin dh_install -p cbflib-bin usr/bin/cbf2nexus dh_install -p cbflib-bin usr/bin/cif2cbf dh_install -p cbflib-bin usr/bin/convert_image dh_install -p cbflib-bin usr/bin/img2cif dh_install -p cbflib-bin usr/bin/makecbf # libcbf-dev dh_install -p libcbf-dev usr/include/cbflib/* dh_install -p libcbf-dev usr/lib/*/lib*.a dh_install -p libcbf-dev usr/lib/*/lib*.so # libcbf1 dh_install -p libcbf1 usr/lib/*/libcbf.so.* # Exclude duplicates (lintian check duplicate-files) dh_install -Xcif_img_1.3.2_22Jun05.html -Xcif_img_1.3.1.html make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' debian/rules override_dh_installdocs make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' # cbflib-doc dh_install -p cbflib-doc doc/*.html usr/share/doc/cbflib-doc/html dh_installdocs -p cbflib-doc html_graphics dh_installdocs: warning: Cannot auto-detect main package for cbflib-doc. If the default is wrong, please use --doc-main-package # libcbf-dev dh_installdocs -p libcbf-dev README dh_installdocs make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_installchangelogs -O--no-parallel debian/rules override_dh_installman make[1]: Entering directory '/<>/cbflib-0.9.6+dfsg1' dh_installman -p cbflib-bin debian/manpages/* make[1]: Leaving directory '/<>/cbflib-0.9.6+dfsg1' dh_python3 -O--no-parallel dh_installinit -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_missing: warning: usr/bin/adscimg2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/arvai_test exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/batch_convert_minicbf.sh exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf2adscimg exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cbf_standardize_numbers exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/cif2c exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/convert_minicbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/minicbf2nexus exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/nexus2cbf exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/roi_peaksearch exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/sequence_match exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/test_cbf_airy_disk_old exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testalloc exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflat exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testflatpacked exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testhdf5 exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/bin/testreals exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: cbflib-bin (5), cbflib-doc (230), libcbf-dev (37), libcbf1 (2), python3-pycbf (0), python3-pycbf-dbg (0) * dh_installdocs: cbflib-bin (0), cbflib-doc (1), libcbf-dev (1), libcbf1 (0), python3-pycbf (0), python3-pycbf-dbg (0) * dh_installman: cbflib-bin (4), cbflib-doc (0), libcbf-dev (0), libcbf1 (0), python3-pycbf (0), python3-pycbf-dbg (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. dh_dwz -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf-dbg/usr/lib/python3/dist-packages/_pycbf.cpython-38d-x86_64-linux-gnu.so debian/python3-pycbf-dbg/usr/lib/python3/dist-packages/_pycbf.cpython-39d-x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pycbf/usr/lib/python3/dist-packages/_pycbf.cpython-38-x86_64-linux-gnu.so debian/python3-pycbf/usr/lib/python3/dist-packages/_pycbf.cpython-39-x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: package python3-pycbf-dbg: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf-dbg: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pycbf: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 INFO: pkgstriptranslations version 146 pkgstriptranslations: processing cbflib-bin (in debian/cbflib-bin); do_strip: , oemstrip: pkgstriptranslations: processing libcbf-dev (in debian/libcbf-dev); do_strip: , oemstrip: pkgstriptranslations: processing python3-pycbf-dbgsym (in debian/.debhelper/python3-pycbf/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/cbflib-bin/DEBIAN/control, package cbflib-bin, directory debian/cbflib-bin INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... pkgstripfiles: processing control file: debian/.debhelper/python3-pycbf/dbgsym-root/DEBIAN/control, package python3-pycbf-dbgsym, directory debian/.debhelper/python3-pycbf/dbgsym-root dpkg-deb: building package 'python3-pycbf-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-pycbf/python3-pycbf-dbgsym_0.9.6+dfsg1-2build2_amd64.deb'. Renaming python3-pycbf-dbgsym_0.9.6+dfsg1-2build2_amd64.deb to python3-pycbf-dbgsym_0.9.6+dfsg1-2build2_amd64.ddeb INFO: pkgstriptranslations version 146 pkgstriptranslations: processing python3-pycbf-dbg (in debian/python3-pycbf-dbg); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-pycbf-dbg/DEBIAN/control, package python3-pycbf-dbg, directory debian/python3-pycbf-dbg INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... pkgstripfiles: processing control file: debian/libcbf-dev/DEBIAN/control, package libcbf-dev, directory debian/libcbf-dev Searching for duplicated docs in dependency libcbf1... symlinking changelog.Debian.gz in libcbf-dev to file in libcbf1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcbf-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcbf-dev' in '../libcbf-dev_0.9.6+dfsg1-2build2_amd64.deb'. INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstripfiles: waiting for lock (cbflib-bin) ... INFO: pkgstriptranslations version 146 pkgstriptranslations: processing libcbf1 (in debian/libcbf1); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libcbf1/DEBIAN/control, package libcbf1, directory debian/libcbf1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcbf1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcbf1' in '../libcbf1_0.9.6+dfsg1-2build2_amd64.deb'. INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstriptranslations version 146 pkgstriptranslations: processing libcbf1-dbgsym (in debian/.debhelper/libcbf1/dbgsym-root); do_strip: , oemstrip: pkgstripfiles: Running PNG optimization (using 4 cpus) for package cbflib-bin ... pkgstripfiles: No PNG files. dpkg-deb: building package 'cbflib-bin' in '../cbflib-bin_0.9.6+dfsg1-2build2_amd64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libcbf1/dbgsym-root/DEBIAN/control, package libcbf1-dbgsym, directory debian/.debhelper/libcbf1/dbgsym-root dpkg-deb: building package 'libcbf1-dbgsym' in 'debian/.debhelper/scratch-space/build-libcbf1/libcbf1-dbgsym_0.9.6+dfsg1-2build2_amd64.deb'. Renaming libcbf1-dbgsym_0.9.6+dfsg1-2build2_amd64.deb to libcbf1-dbgsym_0.9.6+dfsg1-2build2_amd64.ddeb INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstriptranslations version 146 pkgstriptranslations: processing cbflib-bin-dbgsym (in debian/.debhelper/cbflib-bin/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/cbflib-bin/dbgsym-root/DEBIAN/control, package cbflib-bin-dbgsym, directory debian/.debhelper/cbflib-bin/dbgsym-root dpkg-deb: building package 'cbflib-bin-dbgsym' in 'debian/.debhelper/scratch-space/build-cbflib-bin/cbflib-bin-dbgsym_0.9.6+dfsg1-2build2_amd64.deb'. INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... INFO: pkgstripfiles: waiting for lock (python3-pycbf-dbg) ... Renaming cbflib-bin-dbgsym_0.9.6+dfsg1-2build2_amd64.deb to cbflib-bin-dbgsym_0.9.6+dfsg1-2build2_amd64.ddeb INFO: pkgstriptranslations version 146 pkgstriptranslations: processing python3-pycbf (in debian/python3-pycbf); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-pycbf/DEBIAN/control, package python3-pycbf, directory debian/python3-pycbf Searching for duplicated docs in dependency libcbf1... symlinking changelog.Debian.gz in python3-pycbf to file in libcbf1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pycbf ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pycbf' in '../python3-pycbf_0.9.6+dfsg1-2build2_amd64.deb'. Searching for duplicated docs in dependency python3-pycbf... symlinking changelog.Debian.gz in python3-pycbf-dbg to file in libcbf1 Searching for duplicated docs in dependency libcbf1... pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-pycbf-dbg ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-pycbf-dbg' in '../python3-pycbf-dbg_0.9.6+dfsg1-2build2_amd64.deb'. INFO: pkgstriptranslations version 146 pkgstriptranslations: processing cbflib-doc (in debian/cbflib-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/cbflib-doc/DEBIAN/control, package cbflib-doc, directory debian/cbflib-doc .. removing usr/share/doc/cbflib-doc/html/ChangeLog.html pkgstripfiles: Disabled PNG optimization for -doc package cbflib-doc (to save build time) dpkg-deb: building package 'cbflib-doc' in '../cbflib-doc_0.9.6+dfsg1-2build2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../cbflib_0.9.6+dfsg1-2build2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-10-24T09:59:22Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cbflib_0.9.6+dfsg1-2build2_amd64.changes: ----------------------------------------- Format: 1.8 Date: Sat, 24 Oct 2020 10:52:04 +0200 Source: cbflib Binary: cbflib-bin cbflib-doc libcbf-dev libcbf1 python3-pycbf python3-pycbf-dbg Architecture: amd64 all Version: 0.9.6+dfsg1-2build2 Distribution: hirsute-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: cbflib-bin - utilities to manipulate CBF files cbflib-doc - documentation for CBFlib libcbf-dev - development files for CBFlib libcbf1 - shared library supporting CBFlib python3-pycbf - Python modules for CBFLib -- Python3 python3-pycbf-dbg - Python modules for CBFLib -- Python3 (Debug) Changes: cbflib (0.9.6+dfsg1-2build2) hirsute; urgency=medium . * No-change rebuild to build with python3.9 as supported. 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(= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2.1ubuntu1), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-python (= 4.20200925), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3ubuntu1), dpkg (= 1.20.5ubuntu2), dpkg-dev (= 1.20.5ubuntu2), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1ubuntu2), g++ (= 4:10.2.0-1ubuntu1), g++-10 (= 10.2.0-13ubuntu1), gcc (= 4:10.2.0-1ubuntu1), gcc-10 (= 10.2.0-13ubuntu1), gcc-10-base (= 10.2.0-13ubuntu1), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2ubuntu1), hdf5-helpers (= 1.10.6+repack-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libaec-dev (= 1.0.4-1), libaec0 (= 1.0.4-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-13ubuntu1), libatomic1 (= 10.2.0-13ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3ubuntu1), libaudit1 (= 1:2.8.5-3ubuntu1), libbinutils (= 2.35.1-1ubuntu1), libblkid1 (= 2.36-3ubuntu1), libbz2-1.0 (= 1.0.8-4ubuntu2), libc-bin (= 2.32-0ubuntu3), libc-dev-bin (= 2.32-0ubuntu3), libc6 (= 2.32-0ubuntu3), libc6-dev (= 2.32-0ubuntu3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-13ubuntu1), libcom-err2 (= 1.45.6-1ubuntu1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1ubuntu1), libcrypt1 (= 1:4.4.16-1ubuntu1), libctf-nobfd0 (= 2.35.1-1ubuntu1), libctf0 (= 2.35.1-1ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu3), libdebconfclient0 (= 0.252ubuntu1), libdebhelper-perl (= 13.2.1ubuntu1), libdpkg-perl (= 1.20.5ubuntu2), libelf1 (= 0.181-1), libexpat1 (= 2.2.9-1build1), libexpat1-dev (= 2.2.9-1build1), libffi8ubuntu1 (= 3.4~20200819gead65ca871-0ubuntu3), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-13ubuntu1), libgcc-s1 (= 10.2.0-13ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libgfortran5 (= 10.2.0-13ubuntu1), libglib2.0-0 (= 2.66.1-2), libgmp10 (= 2:6.2.0+dfsg-6ubuntu1), libgomp1 (= 10.2.0-13ubuntu1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.17-10), libhdf5-103-1 (= 1.10.6+repack-2), libhdf5-cpp-103-1 (= 1.10.6+repack-2), libhdf5-dev (= 1.10.6+repack-2), libhdf5-fortran-102 (= 1.10.6+repack-2), libhdf5-hl-100 (= 1.10.6+repack-2), libhdf5-hl-cpp-100 (= 1.10.6+repack-2), libhdf5-hl-fortran-100 (= 1.10.6+repack-2), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-13ubuntu1), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.0.3-0ubuntu2), libjpeg-turbo8-dev (= 2.0.3-0ubuntu2), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libk5crypto3 (= 1.17-10), libkeyutils1 (= 1.6.1-2ubuntu1), libkrb5-3 (= 1.17-10), libkrb5support0 (= 1.17-10), liblsan0 (= 10.2.0-13ubuntu1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1ubuntu1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3ubuntu1), libmpc3 (= 1.2.0~rc1-1), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.2-1), libnsl-dev (= 1.3.0-0ubuntu3), libnsl2 (= 1.3.0-0ubuntu3), libnss-nis (= 3.1-0ubuntu4), libnss-nisplus (= 1.3-0ubuntu4), libpam-modules (= 1.3.1-5ubuntu6), libpam-modules-bin (= 1.3.1-5ubuntu6), libpam-runtime (= 1.3.1-5ubuntu6), libpam0g (= 1.3.1-5ubuntu6), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libpython3-all-dbg (= 3.8.6-1), libpython3-all-dev (= 3.8.6-1), libpython3-dbg (= 3.8.6-1), libpython3-dev (= 3.8.6-1), libpython3-stdlib (= 3.8.6-1), libpython3.8 (= 3.8.6-1), libpython3.8-dbg (= 3.8.6-1), libpython3.8-dev (= 3.8.6-1), libpython3.8-minimal (= 3.8.6-1), libpython3.8-stdlib (= 3.8.6-1), libpython3.9 (= 3.9.0-5), libpython3.9-dbg (= 3.9.0-5), libpython3.9-dev (= 3.9.0-5), libpython3.9-minimal (= 3.9.0-5), libpython3.9-stdlib (= 3.9.0-5), libquadmath0 (= 10.2.0-13ubuntu1), libreadline8 (= 8.0-4), libseccomp2 (= 2.4.3-1ubuntu4), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2build1), libsmartcols1 (= 2.36-3ubuntu1), libsqlite3-0 (= 3.33.0-1), libssl1.1 (= 1.1.1f-1ubuntu4), libstdc++-10-dev (= 10.2.0-13ubuntu1), libstdc++6 (= 10.2.0-13ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.6-1ubuntu1), libsz2 (= 1.0.4-1), libtinfo6 (= 6.2-1), libtirpc-common (= 1.2.6-1build1), libtirpc-dev (= 1.2.6-1build1), libtirpc3 (= 1.2.6-1build1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-13ubuntu1), libubsan1 (= 10.2.0-13ubuntu1), libuchardet0 (= 0.0.7-1), libudev1 (= 246.6-1ubuntu1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3ubuntu1), libxml2 (= 2.9.10+dfsg-5build1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.0-25.26), login (= 1:4.8.1-1ubuntu6), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.3-4ubuntu1), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), mime-support (= 3.64ubuntu1), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), pkg-config (= 0.29.2-1ubuntu1), po-debconf (= 1.0.21), python3 (= 3.8.6-1), python3-all (= 3.8.6-1), python3-all-dbg (= 3.8.6-1), python3-all-dev (= 3.8.6-1), python3-dbg (= 3.8.6-1), python3-dev (= 3.8.6-1), python3-distutils (= 3.8.6-1), python3-lib2to3 (= 3.8.6-1), python3-minimal (= 3.8.6-1), python3.8 (= 3.8.6-1), python3.8-dbg (= 3.8.6-1), python3.8-dev (= 3.8.6-1), python3.8-minimal (= 3.8.6-1), python3.9 (= 3.9.0-5), python3.9-dbg (= 3.9.0-5), python3.9-dev (= 3.9.0-5), python3.9-minimal (= 3.9.0-5), readline-common (= 8.0-4), rpcsvc-proto (= 1.4.2-0ubuntu4), sed (= 4.7-1ubuntu1), sensible-utils (= 0.0.13), sysvinit-utils (= 2.96-3ubuntu1), tar (= 1.30+dfsg-7), util-linux (= 2.36-3ubuntu1), xz-utils (= 5.2.4-1ubuntu1), zlib1g (= 1:1.2.11.dfsg-2ubuntu4), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu4) Environment: DEB_BUILD_OPTIONS="parallel=4" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1603529524" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ cbflib-bin_0.9.6+dfsg1-2build2_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 488688 bytes: control archive=1036 bytes. 679 bytes, 17 lines control 676 bytes, 11 lines md5sums Package: cbflib-bin Source: cbflib Version: 0.9.6+dfsg1-2build2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 2894 Depends: libc6 (>= 2.29), libhdf5-103-1 Section: science Priority: optional Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: utilities to manipulate CBF files CBFlib is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. . 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cbflib Version: 0.9.6+dfsg1-2build2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 2503 Depends: libcbf1 (= 0.9.6+dfsg1-2build2), libhdf5-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: development files for CBFlib CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. The CBFLIB API is loosely based on the CIFPARSE API for mmCIF files. CBFLIB does not perform any semantic integrity checks and simply provides functions to create, read, modify and write CBF binary data files and imgCIF ASCII data files. . This package contains libraries and header files for program development. drwxr-xr-x root/root 0 2020-10-24 08:52 ./ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/include/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/include/cbflib/ -rw-r--r-- root/root 72478 2020-10-24 08:52 ./usr/include/cbflib/cbf.h -rw-r--r-- root/root 19076 2020-10-24 08:52 ./usr/include/cbflib/cbf_airy_disk.h -rw-r--r-- root/root 17939 2020-10-24 08:52 ./usr/include/cbflib/cbf_alloc.h -rw-r--r-- root/root 18102 2020-10-24 08:52 ./usr/include/cbflib/cbf_ascii.h -rw-r--r-- root/root 21042 2020-10-24 08:52 ./usr/include/cbflib/cbf_binary.h -rw-r--r-- root/root 20826 2020-10-24 08:52 ./usr/include/cbflib/cbf_byte_offset.h -rw-r--r-- root/root 24266 2020-10-24 08:52 ./usr/include/cbflib/cbf_canonical.h -rw-r--r-- root/root 19954 2020-10-24 08:52 ./usr/include/cbflib/cbf_codes.h -rw-r--r-- root/root 20928 2020-10-24 08:52 ./usr/include/cbflib/cbf_compress.h -rw-r--r-- root/root 18820 2020-10-24 08:52 ./usr/include/cbflib/cbf_context.h -rw-r--r-- root/root 21743 2020-10-24 08:52 ./usr/include/cbflib/cbf_copy.h -rw-r--r-- root/root 23370 2020-10-24 08:52 ./usr/include/cbflib/cbf_file.h -rw-r--r-- root/root 9277 2020-10-24 08:52 ./usr/include/cbflib/cbf_getopt.h -rw-r--r-- root/root 74109 2020-10-24 08:52 ./usr/include/cbflib/cbf_hdf5.h -rw-r--r-- root/root 19495 2020-10-24 08:52 ./usr/include/cbflib/cbf_hdf5_filter.h -rw-r--r-- root/root 17604 2020-10-24 08:52 ./usr/include/cbflib/cbf_lex.h -rw-r--r-- root/root 17718 2020-10-24 08:52 ./usr/include/cbflib/cbf_minicbf_header.h -rw-r--r-- root/root 20856 2020-10-24 08:52 ./usr/include/cbflib/cbf_nibble_offset.h -rw-r--r-- root/root 20598 2020-10-24 08:52 ./usr/include/cbflib/cbf_packed.h -rw-r--r-- root/root 20803 2020-10-24 08:52 ./usr/include/cbflib/cbf_predictor.h -rw-r--r-- root/root 17785 2020-10-24 08:52 ./usr/include/cbflib/cbf_read_binary.h -rw-r--r-- root/root 20072 2020-10-24 08:52 ./usr/include/cbflib/cbf_read_mime.h -rw-r--r-- root/root 78061 2020-10-24 08:52 ./usr/include/cbflib/cbf_simple.h -rw-r--r-- root/root 18154 2020-10-24 08:52 ./usr/include/cbflib/cbf_string.h -rw-r--r-- root/root 2803 2020-10-24 08:52 ./usr/include/cbflib/cbf_stx.h -rw-r--r-- root/root 22471 2020-10-24 08:52 ./usr/include/cbflib/cbf_tree.h -rw-r--r-- root/root 2225 2020-10-24 08:52 ./usr/include/cbflib/cbf_ulp.h -rw-r--r-- root/root 20537 2020-10-24 08:52 ./usr/include/cbflib/cbf_uncompressed.h -rw-r--r-- root/root 18145 2020-10-24 08:52 ./usr/include/cbflib/cbf_write.h -rw-r--r-- root/root 17696 2020-10-24 08:52 ./usr/include/cbflib/cbf_write_binary.h -rw-r--r-- root/root 21535 2020-10-24 08:52 ./usr/include/cbflib/cbf_ws.h -rw-r--r-- root/root 123992 2020-10-24 08:52 ./usr/include/cbflib/cbff.h -rw-r--r-- root/root 1653 2020-10-24 08:52 ./usr/include/cbflib/global.h -rw-r--r-- root/root 4959 2020-10-24 08:52 ./usr/include/cbflib/img.h -rw-r--r-- root/root 1833 2020-10-24 08:52 ./usr/include/cbflib/md5.h drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 1635498 2020-10-24 08:52 ./usr/lib/x86_64-linux-gnu/libcbf.a lrwxrwxrwx root/root 0 2020-10-24 08:52 ./usr/lib/x86_64-linux-gnu/libcbf.so -> libcbf.so.1.0.0 drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/doc/libcbf-dev/ -rw-r--r-- root/root 6315 2020-04-16 10:29 ./usr/share/doc/libcbf-dev/README.gz lrwxrwxrwx root/root 0 2020-10-24 08:52 ./usr/share/doc/libcbf-dev/changelog.Debian.gz -> ../libcbf1/changelog.Debian.gz -rw-r--r-- root/root 13872 2020-04-20 18:16 ./usr/share/doc/libcbf-dev/copyright libcbf1_0.9.6+dfsg1-2build2_amd64.deb ------------------------------------- new Debian package, version 2.0. size 326492 bytes: control archive=5336 bytes. 682 bytes, 18 lines control 217 bytes, 3 lines md5sums 34 bytes, 1 lines shlibs 38190 bytes, 1044 lines symbols 74 bytes, 2 lines triggers Package: libcbf1 Source: cbflib Version: 0.9.6+dfsg1-2build2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 945 Depends: libc6 (>= 2.29), libhdf5-103-1 Section: libs Priority: optional Multi-Arch: same Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: shared library supporting CBFlib CBFlib is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. . This package contains the shared library. drwxr-xr-x root/root 0 2020-10-24 08:52 ./ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/x86_64-linux-gnu/ lrwxrwxrwx root/root 0 2020-10-24 08:52 ./usr/lib/x86_64-linux-gnu/libcbf.so.1 -> libcbf.so.1.0.0 -rw-r--r-- root/root 899360 2020-10-24 08:52 ./usr/lib/x86_64-linux-gnu/libcbf.so.1.0.0 drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/doc/libcbf1/ -rw-r--r-- root/root 2506 2020-10-24 08:52 ./usr/share/doc/libcbf1/changelog.Debian.gz -rw-r--r-- root/root 13872 2020-04-20 18:16 ./usr/share/doc/libcbf1/copyright python3-pycbf-dbg_0.9.6+dfsg1-2build2_amd64.deb ----------------------------------------------- new Debian package, version 2.0. size 203324 bytes: control archive=912 bytes. 788 bytes, 17 lines control 376 bytes, 4 lines md5sums Package: python3-pycbf-dbg Source: cbflib Version: 0.9.6+dfsg1-2build2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 1632 Depends: python3-pycbf (= 0.9.6+dfsg1-2build2), python3-dbg (<< 3.10), python3-dbg (>= 3.8~), libc6 (>= 2.14), libcbf1 (>= 0.9.5.18) Section: debug Priority: optional Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: Python modules for CBFLib -- Python3 (Debug) CBFlib is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. . This package contains the Python3 Debug module. drwxr-xr-x root/root 0 2020-10-24 08:52 ./ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 25576 2020-10-24 08:52 ./usr/lib/debug/.dwz/x86_64-linux-gnu/python3-pycbf-dbg.debug drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/python3/dist-packages/ -rw-r--r-- root/root 807744 2020-10-24 08:52 ./usr/lib/python3/dist-packages/_pycbf.cpython-38d-x86_64-linux-gnu.so -rw-r--r-- root/root 807760 2020-10-24 08:52 ./usr/lib/python3/dist-packages/_pycbf.cpython-39d-x86_64-linux-gnu.so drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/doc/python3-pycbf-dbg/ lrwxrwxrwx root/root 0 2020-10-24 08:52 ./usr/share/doc/python3-pycbf-dbg/changelog.Debian.gz -> ../libcbf1/changelog.Debian.gz -rw-r--r-- root/root 13872 2020-04-20 18:16 ./usr/share/doc/python3-pycbf-dbg/copyright python3-pycbf_0.9.6+dfsg1-2build2_amd64.deb ------------------------------------------- new Debian package, version 2.0. size 191068 bytes: control archive=1220 bytes. 737 bytes, 17 lines control 435 bytes, 5 lines md5sums 251 bytes, 12 lines * postinst #!/bin/sh 400 bytes, 12 lines * prerm #!/bin/sh Package: python3-pycbf Source: cbflib Version: 0.9.6+dfsg1-2build2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 2024 Depends: python3 (<< 3.10), python3 (>= 3.8~), python3:any, libc6 (>= 2.14), libcbf1 (>= 0.9.5.18) Section: python Priority: optional Homepage: http://www.bernstein-plus-sons.com/software/CBF/ Description: Python modules for CBFLib -- Python3 CBFlib is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. . This package contains the Python3 module. drwxr-xr-x root/root 0 2020-10-24 08:52 ./ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/lib/python3/dist-packages/ -rw-r--r-- root/root 180 2020-10-24 08:52 ./usr/lib/python3/dist-packages/_pycbf-0.0.0.egg-info -rw-r--r-- root/root 799680 2020-10-24 08:52 ./usr/lib/python3/dist-packages/_pycbf.cpython-38-x86_64-linux-gnu.so -rw-r--r-- root/root 799696 2020-10-24 08:52 ./usr/lib/python3/dist-packages/_pycbf.cpython-39-x86_64-linux-gnu.so -rw-r--r-- root/root 443246 2020-04-16 10:29 ./usr/lib/python3/dist-packages/pycbf.py drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-10-24 08:52 ./usr/share/doc/python3-pycbf/ lrwxrwxrwx root/root 0 2020-10-24 08:52 ./usr/share/doc/python3-pycbf/changelog.Debian.gz -> ../libcbf1/changelog.Debian.gz -rw-r--r-- root/root 13872 2020-04-20 18:16 ./usr/share/doc/python3-pycbf/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 144 Distribution: hirsute-proposed Host Architecture: amd64 Install-Time: 31 Job: cbflib_0.9.6+dfsg1-2build2.dsc Machine Architecture: amd64 Package: cbflib Package-Time: 177 Source-Version: 0.9.6+dfsg1-2build2 Space: n/a Status: successful Version: 0.9.6+dfsg1-2build2 -------------------------------------------------------------------------------- Finished at 2020-10-24T09:59:22Z Build needed 00:02:57, no disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=hirsute --arch=amd64 PACKAGEBUILD-20181037 Scanning for processes to kill in build PACKAGEBUILD-20181037