https://launchpad.net/ubuntu/+source/cctbx/2021.12+ds1-2/+build/23162307 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-arm64-065 4.15.0-167-generic #175-Ubuntu SMP Wed Jan 5 01:58:16 UTC 2022 aarch64 Buildd toolchain package versions: launchpad-buildd_207~522~ubuntu18.04.1 python3-lpbuildd_207~522~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 13 Feb 17:20:54 ntpdate[1702]: adjust time server 10.211.37.1 offset 0.001600 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-23162307 --image-type chroot /home/buildd/filecache-default/d7d0133902b8cc1df688a841d4b96e994eeac2e0 Creating target for build PACKAGEBUILD-23162307 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-23162307 Starting target for build PACKAGEBUILD-23162307 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-23162307 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23162307 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-23162307 Updating target for build PACKAGEBUILD-23162307 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main arm64 Packages [1376 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe arm64 Packages [13.2 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5607 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 Packages [280 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [94.6 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe arm64 Packages [1227 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [546 kB] Fetched 23.4 MB in 7s (3395 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libperl5.34 libsemanage2 libsepol2 libssl3 perl-modules-5.34 The following packages will be upgraded: apt base-files bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils bzip2 ca-certificates coreutils cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdpkg-perl libext2fs2 libfakeroot libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libhwasan0 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pkgbinarymangler readline-common sed sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata usrmerge util-linux 128 upgraded, 5 newly installed, 1 to remove and 0 not upgraded. Need to get 100 MB of archives. After this operation, 333 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main arm64 libcrypt-dev arm64 1:4.4.27-1 [119 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libc6-dev arm64 2.35-0ubuntu1 [1543 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libc-dev-bin arm64 2.35-0ubuntu1 [19.6 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libc6 arm64 2.35-0ubuntu1 [2715 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libc-bin arm64 2.35-0ubuntu1 [600 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 perl-modules-5.34 all 5.34.0-3ubuntu1 [2975 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libperl5.34 arm64 5.34.0-3ubuntu1 [4700 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 perl arm64 5.34.0-3ubuntu1 [232 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 perl-base arm64 5.34.0-3ubuntu1 [1707 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main arm64 bzip2 arm64 1.0.8-5 [34.5 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main arm64 libbz2-1.0 arm64 1.0.8-5 [36.0 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main arm64 libgdbm6 arm64 1.23-1 [34.1 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main arm64 libgdbm-compat4 arm64 1.23-1 [6294 B] Get:14 http://ftpmaster.internal/ubuntu jammy/main arm64 debconf all 1.5.79 [126 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpam0g arm64 1.4.0-11ubuntu1 [60.8 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main arm64 libcrypt1 arm64 1:4.4.27-1 [86.8 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 linux-libc-dev arm64 5.15.0-22.22 [1241 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main arm64 libcc1-0 arm64 11.2.0-16ubuntu1 [54.1 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libctf0 arm64 2.38-1ubuntu1 [102 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libctf-nobfd0 arm64 2.38-1ubuntu1 [106 kB] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.38-1ubuntu1 [3235 kB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libbinutils arm64 2.38-1ubuntu1 [823 kB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 binutils-common arm64 2.38-1ubuntu1 [221 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 binutils arm64 2.38-1ubuntu1 [3160 B] Get:25 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-11-base arm64 11.2.0-16ubuntu1 [20.9 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcc-s1 arm64 11.2.0-16ubuntu1 [39.3 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main arm64 libgomp1 arm64 11.2.0-16ubuntu1 [115 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main arm64 libitm1 arm64 11.2.0-16ubuntu1 [28.3 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main arm64 libatomic1 arm64 11.2.0-16ubuntu1 [10.8 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main arm64 libasan6 arm64 11.2.0-16ubuntu1 [2220 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main arm64 liblsan0 arm64 11.2.0-16ubuntu1 [942 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main arm64 libtsan0 arm64 11.2.0-16ubuntu1 [2232 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main arm64 libubsan1 arm64 11.2.0-16ubuntu1 [908 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main arm64 libhwasan0 arm64 11.2.0-16ubuntu1 [1010 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main arm64 g++-11 arm64 11.2.0-16ubuntu1 [11.1 MB] Get:36 http://ftpmaster.internal/ubuntu jammy/main arm64 libstdc++-11-dev arm64 11.2.0-16ubuntu1 [2103 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcc-11-dev arm64 11.2.0-16ubuntu1 [1150 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main arm64 gcc-11 arm64 11.2.0-16ubuntu1 [19.5 MB] Get:39 http://ftpmaster.internal/ubuntu jammy/main arm64 cpp-11 arm64 11.2.0-16ubuntu1 [9703 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main arm64 libstdc++6 arm64 11.2.0-16ubuntu1 [625 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main arm64 libgmp10 arm64 2:6.2.1+dfsg-3ubuntu1 [240 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main arm64 libisl23 arm64 0.24-2 [690 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main arm64 libmpc3 arm64 1.2.1-1 [48.1 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main arm64 libzstd1 arm64 1.4.8+dfsg-3 [311 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main arm64 base-files arm64 12ubuntu2 [63.2 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main arm64 debianutils arm64 5.5-1ubuntu1 [106 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main arm64 bash arm64 5.1-6ubuntu1 [762 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main arm64 bsdutils arm64 1:2.37.2-4ubuntu1 [84.5 kB] Get:49 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 coreutils arm64 8.32-4.1ubuntu1 [1398 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main arm64 libgpg-error0 arm64 1.43-3 [69.4 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main arm64 libgcrypt20 arm64 1.9.4-3ubuntu2 [456 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main arm64 libssl3 arm64 3.0.1-0ubuntu1 [1767 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main arm64 libblkid1 arm64 2.37.2-4ubuntu1 [103 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main arm64 libuuid1 arm64 2.37.2-4ubuntu1 [23.8 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main arm64 libcryptsetup12 arm64 2:2.4.3-1ubuntu1 [208 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main arm64 libunistring2 arm64 1.0-1 [544 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main arm64 libidn2-0 arm64 2.3.2-2 [67.1 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main arm64 libffi8 arm64 3.4.2-4 [21.3 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main arm64 libp11-kit0 arm64 0.24.0-6 [231 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main arm64 libtasn1-6 arm64 4.18.0-4 [42.6 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main arm64 libgnutls30 arm64 3.7.3-4ubuntu1 [923 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main arm64 systemd-sysv arm64 249.9-0ubuntu2 [10.5 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main arm64 systemd-timesyncd arm64 249.9-0ubuntu2 [29.7 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main arm64 libacl1 arm64 2.3.1-1 [16.1 kB] Get:65 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libapparmor1 arm64 3.0.3-0ubuntu6 [37.7 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main arm64 libip4tc2 arm64 1.8.7-1ubuntu4 [19.8 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main arm64 libkmod2 arm64 29-1ubuntu1 [46.4 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main arm64 libpcre2-8-0 arm64 10.39-3 [201 kB] Get:69 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libselinux1 arm64 3.3-1build1 [74.3 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main arm64 libmount1 arm64 2.37.2-4ubuntu1 [120 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main arm64 libseccomp2 arm64 2.5.2-2ubuntu3 [48.4 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main arm64 login arm64 1:4.8.1-2ubuntu1 [186 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main arm64 util-linux arm64 2.37.2-4ubuntu1 [1059 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main arm64 mount arm64 2.37.2-4ubuntu1 [113 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main arm64 systemd arm64 249.9-0ubuntu2 [4396 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main arm64 libsystemd0 arm64 249.9-0ubuntu2 [316 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main arm64 libudev1 arm64 249.9-0ubuntu2 [77.8 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main arm64 libxxhash0 arm64 0.8.1-1 [20.1 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main arm64 libapt-pkg6.0 arm64 2.3.15 [865 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main arm64 dpkg arm64 1.21.1ubuntu1 [1235 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main arm64 dash arm64 0.5.11+git20210903+057cd650a4ed-3 [91.7 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main arm64 grep arm64 3.7-1 [152 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main arm64 libncurses6 arm64 6.3-2 [106 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main arm64 libncursesw6 arm64 6.3-2 [142 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main arm64 libtinfo6 arm64 6.3-2 [103 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main arm64 ncurses-bin arm64 6.3-2 [183 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main arm64 sed arm64 4.8-1ubuntu1 [186 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main arm64 init-system-helpers all 1.61 [39.3 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main arm64 ncurses-base all 6.3-2 [20.1 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main arm64 sysvinit-utils arm64 3.01-1ubuntu1 [20.3 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main arm64 gpgv arm64 2.2.27-3ubuntu1 [133 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main arm64 apt arm64 2.3.15 [1356 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main arm64 libsepol2 arm64 3.3-1 [274 kB] Get:94 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsemanage-common all 3.3-1build1 [10.0 kB] Get:95 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libsemanage2 arm64 3.3-1build1 [89.4 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main arm64 passwd arm64 1:4.8.1-2ubuntu1 [761 kB] Get:97 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpam-modules-bin arm64 1.4.0-11ubuntu1 [38.6 kB] Get:98 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpam-modules arm64 1.4.0-11ubuntu1 [278 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main arm64 logsave arm64 1.46.5-2ubuntu1 [10.5 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main arm64 libext2fs2 arm64 1.46.5-2ubuntu1 [212 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main arm64 e2fsprogs arm64 1.46.5-2ubuntu1 [587 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main arm64 init arm64 1.61 [6102 B] Get:103 http://ftpmaster.internal/ubuntu jammy/main arm64 libattr1 arm64 1:2.5.1-1 [13.3 kB] Get:104 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libcap-ng0 arm64 0.7.9-2.2build3 [11.2 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main arm64 libcom-err2 arm64 1.46.5-2ubuntu1 [9728 B] Get:106 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libdebconfclient0 arm64 0.261ubuntu1 [7080 B] Get:107 http://ftpmaster.internal/ubuntu jammy/main arm64 libk5crypto3 arm64 1.19.2-1 [91.6 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main arm64 libkrb5support0 arm64 1.19.2-1 [32.3 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main arm64 libkrb5-3 arm64 1.19.2-1 [356 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main arm64 libgssapi-krb5-2 arm64 1.19.2-1 [142 kB] Get:111 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpam-runtime all 1.4.0-11ubuntu1 [40.2 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main arm64 libsmartcols1 arm64 2.37.2-4ubuntu1 [49.6 kB] Get:113 http://ftpmaster.internal/ubuntu jammy/main arm64 libss2 arm64 1.46.5-2ubuntu1 [11.9 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main arm64 mawk arm64 1.3.4.20200120-3 [101 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main arm64 sensible-utils all 0.0.17 [20.1 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main arm64 usrmerge all 25ubuntu2 [54.7 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main arm64 openssl arm64 3.0.1-0ubuntu1 [1157 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main arm64 ca-certificates all 20211016 [148 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main arm64 readline-common all 8.1.2-1 [53.5 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main arm64 libreadline8 arm64 8.1.2-1 [153 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main arm64 libsqlite3-0 arm64 3.37.2-2 [636 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main arm64 tzdata all 2021e-1ubuntu1 [343 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main arm64 dpkg-dev all 1.21.1ubuntu1 [922 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main arm64 libdpkg-perl all 1.21.1ubuntu1 [236 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main arm64 make arm64 4.3-4ubuntu2 [176 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main arm64 lto-disabled-list all 19 [12.2 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main arm64 libfakeroot arm64 1.27-1ubuntu1 [31.3 kB] Get:128 http://ftpmaster.internal/ubuntu jammy/main arm64 fakeroot arm64 1.27-1ubuntu1 [60.4 kB] Get:129 http://ftpmaster.internal/ubuntu jammy/main arm64 gpg arm64 2.2.27-3ubuntu1 [507 kB] Get:130 http://ftpmaster.internal/ubuntu jammy/main arm64 gpgconf arm64 2.2.27-3ubuntu1 [92.4 kB] Get:131 http://ftpmaster.internal/ubuntu jammy/main arm64 gpg-agent arm64 2.2.27-3ubuntu1 [204 kB] Get:132 http://ftpmaster.internal/ubuntu jammy/main arm64 lockfile-progs arm64 0.1.19 [9778 B] Get:133 http://ftpmaster.internal/ubuntu jammy/main arm64 pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 100 MB in 2s (44.4 MB/s) (Reading database ... 13240 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.27-1_arm64.deb ... Unpacking libcrypt-dev:arm64 (1:4.4.27-1) over (1:4.4.18-4ubuntu2) ... Preparing to unpack .../libc6-dev_2.35-0ubuntu1_arm64.deb ... Unpacking libc6-dev:arm64 (2.35-0ubuntu1) over (2.34-0ubuntu3) ... Preparing to unpack .../libc-dev-bin_2.35-0ubuntu1_arm64.deb ... Unpacking libc-dev-bin (2.35-0ubuntu1) over (2.34-0ubuntu3) ... Preparing to unpack .../libc6_2.35-0ubuntu1_arm64.deb ... Unpacking libc6:arm64 (2.35-0ubuntu1) over (2.34-0ubuntu3) ... Setting up libc6:arm64 (2.35-0ubuntu1) ... (Reading database ... 13244 files and directories currently installed.) Preparing to unpack .../libc-bin_2.35-0ubuntu1_arm64.deb ... Unpacking libc-bin (2.35-0ubuntu1) over (2.34-0ubuntu3) ... Setting up libc-bin (2.35-0ubuntu1) ... (Reading database ... 13242 files and directories currently installed.) Preparing to unpack .../perl_5.34.0-3ubuntu1_arm64.deb ... Unpacking perl (5.34.0-3ubuntu1) over (5.32.1-3ubuntu3) ... 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Universal Time is now: Sun Feb 13 17:21:46 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.27-1ubuntu1) ... Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:arm64 (6.3-2) ... Setting up libmpc3:arm64 (1.2.1-1) ... Setting up systemd-timesyncd (249.9-0ubuntu2) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:arm64 (11.2.0-16ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libss2:arm64 (1.46.5-2ubuntu1) ... Setting up libncursesw6:arm64 (6.3-2) ... Setting up logsave (1.46.5-2ubuntu1) ... Setting up libubsan1:arm64 (11.2.0-16ubuntu1) ... Setting up sensible-utils (0.0.17) ... Setting up libhwasan0:arm64 (11.2.0-16ubuntu1) ... Setting up libcrypt-dev:arm64 (1:4.4.27-1) ... Setting up mawk (1.3.4.20200120-3) ... Setting up libbinutils:arm64 (2.38-1ubuntu1) ... Setting up libisl23:arm64 (0.24-2) ... Setting up libc-dev-bin (2.35-0ubuntu1) ... Setting up openssl (3.0.1-0ubuntu1) ... 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Setting up libgcc-11-dev:arm64 (11.2.0-16ubuntu1) ... Setting up gcc-11 (11.2.0-16ubuntu1) ... Setting up gpgconf (2.2.27-3ubuntu1) ... Setting up libc6-dev:arm64 (2.35-0ubuntu1) ... Setting up gpg (2.2.27-3ubuntu1) ... Setting up libperl5.34:arm64 (5.34.0-3ubuntu1) ... Setting up gpg-agent (2.2.27-3ubuntu1) ... Setting up perl (5.34.0-3ubuntu1) ... Setting up libdpkg-perl (1.21.1ubuntu1) ... Setting up libstdc++-11-dev:arm64 (11.2.0-16ubuntu1) ... Setting up g++-11 (11.2.0-16ubuntu1) ... Setting up dpkg-dev (1.21.1ubuntu1) ... Processing triggers for libc-bin (2.35-0ubuntu1) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23162307 arm64 jammy-proposed -c chroot:build-PACKAGEBUILD-23162307 --arch=arm64 --dist=jammy-proposed --nolog cctbx_2021.12+ds1-2.dsc Initiating build PACKAGEBUILD-23162307 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-167-generic #175-Ubuntu SMP Wed Jan 5 01:58:16 UTC 2022 aarch64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-arm64-065.buildd +==============================================================================+ | cctbx 2021.12+ds1-2 (arm64) Sun, 13 Feb 2022 17:21:53 +0000 | +==============================================================================+ Package: cctbx Version: 2021.12+ds1-2 Source Version: 2021.12+ds1-2 Distribution: jammy-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23162307/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- cctbx_2021.12+ds1-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/cctbx-29p5f4/cctbx-2021.12+ds1' with '<>' I: NOTICE: Log filtering will replace 'build/cctbx-29p5f4' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-CEZd17/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-CEZd17/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CEZd17/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-CEZd17/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CEZd17/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-CEZd17/apt_archive ./ Packages [435 B] Fetched 1741 B in 0s (79.4 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 systemd-timesyncd Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-CEZd17/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 15366 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, jq, python3-all-dev:any, scons, liblz4-dev, libexpat1-dev, libfftw3-dev, libcbf-dev, libann-dev, libclipper-dev, libantlr3c-dev, libboost-dev, libboost-python-dev, libboost-thread-dev, libboost-numpy-dev, libtool, libeigen3-dev, python3-numpy, python3-setuptools, python3-matplotlib, python3-biopython, python3-psutil, python3-msgpack, python3-six, python3-future Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, jq, python3-all-dev:any, scons, liblz4-dev, libexpat1-dev, libfftw3-dev, libcbf-dev, libann-dev, libclipper-dev, libantlr3c-dev, libboost-dev, libboost-python-dev, libboost-thread-dev, libboost-numpy-dev, libtool, libeigen3-dev, python3-numpy, python3-setuptools, python3-matplotlib, python3-biopython, python3-psutil, python3-msgpack, python3-six, python3-future dpkg-deb: building package 'sbuild-build-depends-cctbx-dummy' in '/<>/resolver-CEZd17/apt_archive/sbuild-build-depends-cctbx-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-cctbx-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-CEZd17/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CEZd17/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-CEZd17/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CEZd17/apt_archive ./ Sources [642 B] Get:5 copy:/<>/resolver-CEZd17/apt_archive ./ Packages [727 B] Fetched 2332 B in 0s (98.8 kB/s) Reading package lists... Reading package lists... Install cctbx build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fftw-dev fftw2 file fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 gettext gettext-base groff-base hdf5-helpers ibverbs-providers intltool-debian jq libaec-dev libaec0 libann-dev libann0 libantlr3c-3.4-0 libantlr3c-dev libarchive-zip-perl libblas3 libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-numpy-dev libboost-numpy1.74-dev libboost-numpy1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system1.74-dev libboost-system1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libcbf-dev libcbf1 libccp4-data libccp4-dev libccp4c0 libccp4f0 libclipper-dev libclipper2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl libdeflate0 libdw1 libedit2 libeigen3-dev libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwloc-plugins libhwloc15 libibverbs1 libicu70 libimagequant0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblz4-dev libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev libmpdec3 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libonig5 libopenjp2-7 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libsub-override-perl libsz2 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libucx0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 m4 man-db media-types ocl-icd-libopencl1 pkg-config po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-future python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-msgpack python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-psutil python3-pyparsing python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal scons sfftw-dev sfftw2 tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo dh-make flit python3-build python3-tomli python3-installer mpi-defaults-bin fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc gccxml libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-program-options1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libclipper-doc libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc libfftw3-doc libhdf5-doc libjs-jquery-ui-docs liblcms2-utils pciutils libssl-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd libmail-box-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise w3-dtd-mathml python-cycler-doc python-future-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-pytest python-pil-doc python-psutil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support python3.9-venv python3.9-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-bs4 python3-html5lib python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fftw-dev fftw2 file fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 gettext gettext-base groff-base hdf5-helpers ibverbs-providers intltool-debian jq libaec-dev libaec0 libann-dev libann0 libantlr3c-3.4-0 libantlr3c-dev libarchive-zip-perl libblas3 libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-numpy-dev libboost-numpy1.74-dev libboost-numpy1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system1.74-dev libboost-system1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libcbf-dev libcbf1 libccp4-data libccp4-dev libccp4c0 libccp4f0 libclipper-dev libclipper2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl libdeflate0 libdw1 libedit2 libeigen3-dev libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwloc-plugins libhwloc15 libibverbs1 libicu70 libimagequant0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblz4-dev libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev libmpdec3 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma1 libonig5 libopenjp2-7 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libsub-override-perl libsz2 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libucx0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 m4 man-db media-types ocl-icd-libopencl1 pkg-config po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-future python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-msgpack python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-psutil python3-pyparsing python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal sbuild-build-depends-cctbx-dummy scons sfftw-dev sfftw2 tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev 0 upgraded, 243 newly installed, 0 to remove and 0 not upgraded. Need to get 149 MB of archives. After this operation, 742 MB of additional disk space will be used. Get:1 copy:/<>/resolver-CEZd17/apt_archive ./ sbuild-build-depends-cctbx-dummy 0.invalid.0 [816 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main arm64 libpython3.10-minimal arm64 3.10.2-1 [803 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main arm64 libexpat1 arm64 2.4.4-1 [77.1 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main arm64 python3.10-minimal arm64 3.10.2-1 [2170 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 python3-minimal arm64 3.10.1-0ubuntu1 [24.7 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main arm64 media-types all 5.0.0 [25.5 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main arm64 libmd0 arm64 1.0.4-1 [23.8 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main arm64 libbsd0 arm64 0.11.5-1 [43.7 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main arm64 libedit2 arm64 3.1-20210910-1 [95.9 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main arm64 libmpdec3 arm64 2.5.1-2build1 [89.0 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main arm64 libpython3.10-stdlib arm64 3.10.2-1 [1820 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main arm64 python3.10 arm64 3.10.2-1 [482 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libpython3-stdlib arm64 3.10.1-0ubuntu1 [7320 B] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 python3 arm64 3.10.1-0ubuntu1 [22.8 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main arm64 libpython3.9-minimal arm64 3.9.10-1 [786 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main arm64 python3.9-minimal arm64 3.9.10-1 [2141 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main arm64 libelf1 arm64 0.186-1 [51.1 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main arm64 libfribidi0 arm64 1.0.8-2ubuntu2 [26.1 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main arm64 libglib2.0-0 arm64 2.71.1-1 [1420 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main arm64 libpython3.9-stdlib arm64 3.9.10-1 [1805 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main arm64 libicu70 arm64 70.1-2 [10.5 MB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libxml2 arm64 2.9.12+dfsg-5build1 [726 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main arm64 python3-pkg-resources all 59.6.0-1.2 [132 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main arm64 python3.9 arm64 3.9.10-1 [440 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main arm64 ucf all 3.0043 [56.1 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main arm64 bsdextrautils arm64 2.37.2-4ubuntu1 [70.1 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main arm64 libmagic-mgc arm64 1:5.41-2 [257 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main arm64 libmagic1 arm64 1:5.41-2 [84.9 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main arm64 file arm64 1:5.41-2 [21.6 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main arm64 gettext-base arm64 0.21-4ubuntu3 [35.2 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main arm64 libuchardet0 arm64 0.0.7-1build1 [76.8 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main arm64 groff-base arm64 1.22.4-8 [917 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main arm64 libnuma1 arm64 2.0.14-3ubuntu1 [22.8 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main arm64 libpipeline1 arm64 1.5.5-1 [23.2 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main arm64 libpsl5 arm64 0.21.0-1.2build1 [57.5 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main arm64 libxau6 arm64 1:1.0.9-1build4 [7638 B] Get:37 http://ftpmaster.internal/ubuntu jammy/main arm64 libxdmcp6 arm64 1:1.1.3-0ubuntu4 [10.9 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main arm64 libxcb1 arm64 1.14-3ubuntu2 [49.1 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main arm64 libx11-data all 2:1.7.2-2 [123 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main arm64 libx11-6 arm64 2:1.7.2-2 [659 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main arm64 libxext6 arm64 2:1.3.4-1 [31.1 kB] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 man-db arm64 2.10.1-1 [1180 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main arm64 libsigsegv2 arm64 2.13-1ubuntu2 [14.5 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main arm64 m4 arm64 1.4.18-5ubuntu1 [196 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main arm64 autoconf all 2.71-2 [338 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main arm64 automake all 1:1.16.5-1.1 [558 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main arm64 autopoint all 0.21-4ubuntu3 [422 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main arm64 libtcl8.6 arm64 8.6.12+dfsg-1 [986 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main arm64 libbrotli1 arm64 1.0.9-2build4 [314 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main arm64 libfreetype6 arm64 2.11.1+dfsg-1 [383 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main arm64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main arm64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main arm64 fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main arm64 libfontconfig1 arm64 2.13.1-4.2ubuntu4 [135 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main arm64 libxrender1 arm64 1:0.9.10-1build3 [18.8 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main arm64 libxft2 arm64 2.3.3-0ubuntu4 [40.5 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main arm64 x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main arm64 libxss1 arm64 1:1.2.3-1build1 [8354 B] Get:60 http://ftpmaster.internal/ubuntu jammy/main arm64 libtk8.6 arm64 8.6.12-1 [776 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-4.1build1 [625 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main arm64 blt arm64 2.5.3+dfsg-4.1build1 [4846 B] Get:63 http://ftpmaster.internal/ubuntu jammy/main arm64 libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main arm64 libtool all 2.4.6-15build1 [164 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main arm64 dh-autoreconf all 20 [16.1 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main arm64 libsub-override-perl all 0.09-2 [9532 B] Get:68 http://ftpmaster.internal/ubuntu jammy/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main arm64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:70 http://ftpmaster.internal/ubuntu jammy/main arm64 libdw1 arm64 0.186-1 [246 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main arm64 debugedit arm64 1:5.0-4 [46.4 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main arm64 dwz arm64 0.14-1build1 [102 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[58.1 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main arm64 libnl-route-3-200 arm64 3.5.0-0.1 [173 kB] Get:84 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libibverbs1 arm64 39.0-1 [66.3 kB] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 ibverbs-providers arm64 39.0-1 [334 kB] Get:86 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 librdmacm1 arm64 39.0-1 [70.4 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/universe arm64 libfabric1 arm64 1.11.0-3 [436 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/universe arm64 libhwloc15 arm64 2.7.0-2 [148 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg2-3 [21.2 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main arm64 libsasl2-2 arm64 2.1.27+dfsg2-3 [55.6 kB] Get:91 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libldap-2.5-0 arm64 2.5.11+dfsg-1~exp1ubuntu2 [183 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main arm64 libnghttp2-14 arm64 1.43.0-1build2 [75.3 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2build3 [59.3 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main arm64 libssh-4 arm64 0.9.6-2 [184 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main arm64 libcurl3-gnutls arm64 7.81.0-1 [278 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main arm64 libpciaccess0 arm64 0.16-3 [18.8 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main arm64 libxnvctrl0 arm64 470.57.01-0ubuntu4 [11.2 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/universe arm64 ocl-icd-libopencl1 arm64 2.2.14-3 [38.8 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/universe arm64 libhwloc-plugins arm64 2.7.0-2 [15.6 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/universe arm64 libpmix2 arm64 4.1.1~rc6-1ubuntu1 [600 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/universe arm64 libucx0 arm64 1.12.1~rc1-1 [818 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/universe arm64 libopenmpi3 arm64 4.1.2-1ubuntu1 [2468 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/universe arm64 fftw2 arm64 2.1.5-6 [178 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/universe arm64 fftw-dev arm64 2.1.5-6 [213 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/universe arm64 fonts-lyx all 2.3.6-1 [159 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/universe arm64 hdf5-helpers arm64 1.10.7+repack-4ubuntu2 [14.2 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main arm64 libonig5 arm64 6.9.7.1-2 [169 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main arm64 libjq1 arm64 1.6-2.1ubuntu2 [125 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main arm64 jq arm64 1.6-2.1ubuntu2 [52.1 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/universe arm64 libaec0 arm64 1.0.6-1 [19.5 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/universe arm64 libann0 arm64 1.1.2+doc-7build1 [24.2 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/universe arm64 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[593 kB] Get:167 http://ftpmaster.internal/ubuntu jammy/main arm64 libfftw3-bin arm64 3.3.8-2ubuntu7 [25.4 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/main arm64 libfftw3-dev arm64 3.3.8-2ubuntu7 [1541 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/main arm64 libgraphite2-3 arm64 1.3.14-1build1 [68.8 kB] Get:170 http://ftpmaster.internal/ubuntu jammy-proposed/main arm64 libharfbuzz0b arm64 2.7.4-1ubuntu3 [352 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/universe arm64 libhdf5-cpp-103-1 arm64 1.10.7+repack-4ubuntu2 [121 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/universe arm64 libhdf5-fortran-102 arm64 1.10.7+repack-4ubuntu2 [89.7 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/universe arm64 libhdf5-hl-100 arm64 1.10.7+repack-4ubuntu2 [58.4 kB] Get:174 http://ftpmaster.internal/ubuntu jammy/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.7+repack-4ubuntu2 [31.7 kB] Get:175 http://ftpmaster.internal/ubuntu jammy/universe arm64 libhdf5-hl-cpp-100 arm64 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Setting up liblz4-dev:arm64 (1.9.3-2build1) ... Setting up pkg-config (0.29.2-1ubuntu2) ... Setting up fonts-dejavu-core (2.37-2build1) ... Setting up libccp4c0:arm64 (6.5.1-5) ... Setting up ucf (3.0043) ... Setting up libjpeg-turbo8:arm64 (2.1.1-0ubuntu1) ... Setting up libfftw3-double3:arm64 (3.3.8-2ubuntu7) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg2-3) ... Setting up libssh-4:arm64 (0.9.6-2) ... Setting up libgfortran5:arm64 (11.2.0-16ubuntu1) ... Setting up libwebp7:arm64 (1.2.1-6) ... Setting up libboost-atomic1.74-dev:arm64 (1.74.0-14ubuntu2) ... Setting up libboost-serialization1.74.0:arm64 (1.74.0-14ubuntu2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2ubuntu7) ... Setting up libnuma1:arm64 (2.0.14-3ubuntu1) ... Setting up libmd0:arm64 (1.0.4-1) ... Setting up ocl-icd-libopencl1:arm64 (2.2.14-3) ... Setting up libuchardet0:arm64 (0.0.7-1build1) ... Setting up libnl-3-200:arm64 (3.5.0-0.1) ... Setting up libmpdec3:arm64 (2.5.1-2build1) ... 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Setting up libccp4f0:arm64 (6.5.1-5) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libdw1:arm64 (0.186-1) ... Setting up libjpeg-turbo8-dev:arm64 (2.1.1-0ubuntu1) ... Setting up libxdmcp6:arm64 (1:1.1.3-0ubuntu4) ... Setting up liblapack3:arm64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3ubuntu2) ... Setting up libccp4-dev:arm64 (6.5.1-5) ... Setting up libtool (2.4.6-15build1) ... Setting up libfftw3-bin (3.3.8-2ubuntu7) ... Setting up libjq1:arm64 (1.6-2.1ubuntu2) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libwebpdemux2:arm64 (1.2.1-6) ... Setting up libedit2:arm64 (3.1-20210910-1) ... Setting up libaec-dev:arm64 (1.0.6-1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libldap-2.5-0:arm64 (2.5.11+dfsg-1~exp1ubuntu2) ... Setting up libnl-route-3-200:arm64 (3.5.0-0.1) ... Setting up libann-dev (1.1.2+doc-7build1) ... Setting up libpython3.10-stdlib:arm64 (3.10.2-1) ... Setting up libpython3.9:arm64 (3.9.10-1) ... Setting up libjs-jquery-ui (1.13.0+dfsg-1) ... Setting up libraqm0:arm64 (0.7.0-4ubuntu1) ... Setting up libeigen3-dev (3.4.0-2ubuntu2) ... Setting up libboost-numpy1.74-dev (1.74.0-14ubuntu2) ... Setting up libjs-sphinxdoc (4.3.2-1) ... Setting up autoconf (2.71-2) ... Setting up libboost-serialization1.74-dev:arm64 (1.74.0-14ubuntu2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-8) ... Setting up jq (1.6-2.1ubuntu2) ... Setting up debugedit (1:5.0-4) ... Setting up libcurl4:arm64 (7.81.0-1) ... Setting up libx11-6:arm64 (2:1.7.2-2) ... Setting up libtiff5:arm64 (4.3.0-4) ... Setting up libfontconfig1:arm64 (2.13.1-4.2ubuntu4) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libfftw3-dev:arm64 (3.3.8-2ubuntu7) ... Setting up libxml2:arm64 (2.9.12+dfsg-5build1) ... Setting up python3.9 (3.9.10-1) ... Setting up libpython3-stdlib:arm64 (3.10.1-0ubuntu1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.3-10) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.10:arm64 (3.10.2-1) ... Setting up libibverbs1:arm64 (39.0-1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up python3.10 (3.10.2-1) ... Setting up libxrender1:arm64 (1:0.9.10-1build3) ... Setting up ibverbs-providers:arm64 (39.0-1) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up libxext6:arm64 (2:1.3.4-1) ... Setting up libpython3.9-dev:arm64 (3.9.10-1) ... Setting up libcurl3-gnutls:arm64 (7.81.0-1) ... Setting up python3 (3.10.1-0ubuntu1) ... Setting up man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-psutil (5.9.0-1) ... Setting up python3-tz (2021.3-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxnvctrl0:arm64 (470.57.01-0ubuntu4) ... Setting up python3-six (1.16.0-3) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.74-dev:arm64 (1.74.0-14ubuntu2) ... Setting up python3-decorator (4.4.2-0ubuntu1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up libcurl4-openssl-dev:arm64 (7.81.0-1) ... Setting up python3-brotli (1.0.9-2build4) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:arm64 (3.6.5-1) ... Setting up libboost-numpy-dev (1.74.0.3ubuntu6) ... Setting up python3-kiwisolver (1.3.2-1) ... Setting up libpython3.10-dev:arm64 (3.10.2-1) ... Setting up python3.10-dev (3.10.2-1) ... Setting up libhdf5-103-1:arm64 (1.10.7+repack-4ubuntu2) ... Setting up python3.9-dev (3.9.10-1) ... Setting up libxslt1.1:arm64 (1.1.34-4build1) ... Setting up libhdf5-cpp-103-1:arm64 (1.10.7+repack-4ubuntu2) ... Setting up libboost-thread1.74-dev:arm64 (1.74.0-14ubuntu2) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-msgpack (1.0.2-2) ... Setting up libxss1:arm64 (1:1.2.3-1build1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.9.10-1) ... Setting up python3-appdirs (1.4.4-2) ... Setting up libboost-thread-dev:arm64 (1.74.0.3ubuntu6) ... Setting up libhdf5-hl-100:arm64 (1.10.7+repack-4ubuntu2) ... Setting up python3-pkg-resources (59.6.0-1.2) ... Setting up python3-distutils (3.9.10-1) ... Setting up dh-python (5.20220119) ... Setting up python3-sympy (1.9-1) ... Setting up librdmacm1:arm64 (39.0-1) ... Setting up python3-attr (21.2.0-1) ... Setting up libucx0:arm64 (1.12.1~rc1-1) ... Setting up libxft2:arm64 (2.3.3-0ubuntu4) ... Setting up libpython3-dev:arm64 (3.10.1-0ubuntu1) ... Setting up python3-renderpm:arm64 (3.6.5-1) ... Setting up python3-setuptools (59.6.0-1.2) ... Setting up python3-lz4 (3.1.3+dfsg-1build2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.12-1) ... Setting up python3-all (3.10.1-0ubuntu1) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up dh-exec (0.23.4build1) ... Setting up libhwloc-plugins:arm64 (2.7.0-2) ... Setting up python3-fs (2.4.12-1) ... Setting up libcbf1:arm64 (0.9.6+dfsg1-3) ... Setting up libhdf5-hl-cpp-100:arm64 (1.10.7+repack-4ubuntu2) ... Setting up python3-packaging (21.3-1) ... Setting up libpython3-all-dev:arm64 (3.10.1-0ubuntu1) ... Setting up python3-dev (3.10.1-0ubuntu1) ... Setting up scons (4.0.1+dfsg-2) ... Setting up libhdf5-fortran-102:arm64 (1.10.7+repack-4ubuntu2) ... Setting up python3-numpy (1:1.21.5-1) ... Setting up python3-lxml:arm64 (4.7.1-1) ... Setting up libhdf5-hl-fortran-100:arm64 (1.10.7+repack-4ubuntu2) ... Setting up python3-future (0.18.2-5) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-all-dev (3.10.1-0ubuntu1) ... Setting up libfabric1:arm64 (1.11.0-3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build1) ... Setting up python3-scipy (1.7.1-1ubuntu1) ... Setting up libpmix2:arm64 (4.1.1~rc6-1ubuntu1) ... Setting up libopenmpi3:arm64 (4.1.2-1ubuntu1) ... Setting up blt (2.5.3+dfsg-4.1build1) ... Setting up sfftw2 (2.1.5-6) ... Setting up python3-tk:arm64 (3.9.10-1) ... Setting up libboost-python1.74-dev (1.74.0-14ubuntu2) ... Setting up libboost-python-dev (1.74.0.3ubuntu6) ... Setting up fftw2 (2.1.5-6) ... Setting up libhdf5-dev (1.10.7+repack-4ubuntu2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up sfftw-dev (2.1.5-6) ... Setting up libclipper2:arm64 (2.1.20201109-1) ... Setting up fftw-dev (2.1.5-6) ... Setting up libclipper-dev:arm64 (2.1.20201109-1) ... Setting up libcbf-dev:arm64 (0.9.6+dfsg1-3) ... Setting up python3-fonttools (4.29.1-1) ... Setting up python3-pil:arm64 (9.0.0-1build1) ... Setting up python3-pil.imagetk:arm64 (9.0.0-1build1) ... Setting up python3-ufolib2 (0.13.1+dfsg1-1) ... Setting up python3-reportlab (3.6.5-1) ... Setting up python3-biopython (1.79+dfsg-1) ... Setting up python3-matplotlib (3.5.1-2) ... Setting up sbuild-build-depends-cctbx-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.35-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-167-generic arm64 (aarch64) Toolchain package versions: binutils_2.38-1ubuntu1 dpkg-dev_1.21.1ubuntu1 g++-11_11.2.0-16ubuntu1 gcc-11_11.2.0-16ubuntu1 libc6-dev_2.35-0ubuntu1 libstdc++-11-dev_11.2.0-16ubuntu1 libstdc++6_11.2.0-16ubuntu1 linux-libc-dev_5.15.0-22.22 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.15 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20220109.1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-6ubuntu1 binutils_2.38-1ubuntu1 binutils-aarch64-linux-gnu_2.38-1ubuntu1 binutils-common_2.38-1ubuntu1 blt_2.5.3+dfsg-4.1build1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-5 ca-certificates_20211016 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libboost-python-dev_1.74.0.3ubuntu6 libboost-python1.74-dev_1.74.0-14ubuntu2 libboost-python1.74.0_1.74.0-14ubuntu2 libboost-serialization1.74-dev_1.74.0-14ubuntu2 libboost-serialization1.74.0_1.74.0-14ubuntu2 libboost-system1.74-dev_1.74.0-14ubuntu2 libboost-system1.74.0_1.74.0-14ubuntu2 libboost-thread-dev_1.74.0.3ubuntu6 libboost-thread1.74-dev_1.74.0-14ubuntu2 libboost-thread1.74.0_1.74.0-14ubuntu2 libboost1.74-dev_1.74.0-14ubuntu2 libbrotli1_1.0.9-2build4 libbsd0_0.11.5-1 libbz2-1.0_1.0.8-5 libc-bin_2.35-0ubuntu1 libc-dev-bin_2.35-0ubuntu1 libc6_2.35-0ubuntu1 libc6-dev_2.35-0ubuntu1 libcap-ng0_0.7.9-2.2build3 libcap2_1:2.44-1build2 libcbf-dev_0.9.6+dfsg1-3 libcbf1_0.9.6+dfsg1-3 libcc1-0_11.2.0-16ubuntu1 libccp4-data_6.5.1-5 libccp4-dev_6.5.1-5 libccp4c0_6.5.1-5 libccp4f0_6.5.1-5 libclipper-dev_2.1.20201109-1 libclipper2_2.1.20201109-1 libcom-err2_1.46.5-2ubuntu1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libcryptsetup12_2:2.4.3-1ubuntu1 libctf-nobfd0_2.38-1ubuntu1 libctf0_2.38-1ubuntu1 libcurl3-gnutls_7.81.0-1 libcurl4_7.81.0-1 libcurl4-openssl-dev_7.81.0-1 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.261ubuntu1 libdebhelper-perl_13.5.2ubuntu1 libdeflate0_1.8-1ubuntu1 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.21.1ubuntu1 libdw1_0.186-1 libedit2_3.1-20210910-1 libeigen3-dev_3.4.0-2ubuntu2 libelf1_0.186-1 libevent-core-2.1-7_2.1.12-stable-1build2 libevent-pthreads-2.1-7_2.1.12-stable-1build2 libexpat1_2.4.4-1 libexpat1-dev_2.4.4-1 libext2fs2_1.46.5-2ubuntu1 libfabric1_1.11.0-3 libfakeroot_1.27-1ubuntu1 libffi8_3.4.2-4 libfftw3-bin_3.3.8-2ubuntu7 libfftw3-dev_3.3.8-2ubuntu7 libfftw3-double3_3.3.8-2ubuntu7 libfftw3-long3_3.3.8-2ubuntu7 libfftw3-single3_3.3.8-2ubuntu7 libfile-stripnondeterminism-perl_1.13.0-1 libfontconfig1_2.13.1-4.2ubuntu4 libfreetype6_2.11.1+dfsg-1 libfribidi0_1.0.8-2ubuntu2 libgcc-11-dev_11.2.0-16ubuntu1 libgcc-s1_11.2.0-16ubuntu1 libgcrypt20_1.9.4-3ubuntu2 libgdbm-compat4_1.23-1 libgdbm6_1.23-1 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libsemanage2_3.3-1build1 libsepol1_3.1-1ubuntu2 libsepol2_3.3-1 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.37.2-4ubuntu1 libsqlite3-0_3.37.2-2 libss2_1.46.5-2ubuntu1 libssh-4_0.9.6-2 libssl-dev_3.0.1-0ubuntu1 libssl1.1_1.1.1l-1ubuntu1 libssl3_3.0.1-0ubuntu1 libstdc++-11-dev_11.2.0-16ubuntu1 libstdc++6_11.2.0-16ubuntu1 libsub-override-perl_0.09-2 libsystemd0_249.9-0ubuntu2 libsz2_1.0.6-1 libtasn1-6_4.18.0-4 libtcl8.6_8.6.12+dfsg-1 libtiff5_4.3.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.12-1 libtool_2.4.6-15build1 libtsan0_11.2.0-16ubuntu1 libubsan1_11.2.0-16ubuntu1 libuchardet0_0.0.7-1build1 libucx0_1.12.1~rc1-1 libudev1_249.9-0ubuntu2 libunistring2_1.0-1 libuuid1_2.37.2-4ubuntu1 libwebp7_1.2.1-6 libwebpdemux2_1.2.1-6 libwebpmux3_1.2.1-6 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1build4 libxcb1_1.14-3ubuntu2 libxdmcp6_1:1.1.3-0ubuntu4 libxext6_2:1.3.4-1 libxft2_2.3.3-0ubuntu4 libxml2_2.9.12+dfsg-5build1 libxnvctrl0_470.57.01-0ubuntu4 libxrender1_1:0.9.10-1build3 libxslt1.1_1.1.34-4build1 libxss1_1:1.2.3-1build1 libxxhash0_0.8.1-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.0-22.22 lockfile-progs_0.1.19 login_1:4.8.1-2ubuntu1 logsave_1.46.5-2ubuntu1 lsb-base_11.1.0ubuntu3 lto-disabled-list_19 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.10.1-1 mawk_1.3.4.20200120-3 media-types_5.0.0 mount_2.37.2-4ubuntu1 ncurses-base_6.3-2 ncurses-bin_6.3-2 ocl-icd-libopencl1_2.2.14-3 openssl_3.0.1-0ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-2ubuntu1 patch_2.7.6-7build1 perl_5.34.0-3ubuntu1 perl-base_5.34.0-3ubuntu1 perl-modules-5.32_5.32.1-3ubuntu3 perl-modules-5.34_5.34.0-3ubuntu1 pinentry-curses_1.1.1-1build1 pkg-config_0.29.2-1ubuntu2 pkgbinarymangler_149 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 python-matplotlib-data_3.5.1-2 python3_3.10.1-0ubuntu1 python3-all_3.10.1-0ubuntu1 python3-all-dev_3.10.1-0ubuntu1 python3-appdirs_1.4.4-2 python3-attr_21.2.0-1 python3-biopython_1.79+dfsg-1 python3-brotli_1.0.9-2build4 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-0ubuntu1 python3-dev_3.10.1-0ubuntu1 python3-distutils_3.9.10-1 python3-fonttools_4.29.1-1 python3-fs_2.4.12-1 python3-future_0.18.2-5 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.10-1 python3-lxml_4.7.1-1 python3-lz4_3.1.3+dfsg-1build2 python3-matplotlib_3.5.1-2 python3-minimal_3.10.1-0ubuntu1 python3-mpmath_1.2.1-2 python3-msgpack_1.0.2-2 python3-numpy_1:1.21.5-1 python3-packaging_21.3-1 python3-pil_9.0.0-1build1 python3-pil.imagetk_9.0.0-1build1 python3-pkg-resources_59.6.0-1.2 python3-psutil_5.9.0-1 python3-pyparsing_2.4.7-1 python3-renderpm_3.6.5-1 python3-reportlab_3.6.5-1 python3-reportlab-accel_3.6.5-1 python3-scipy_1.7.1-1ubuntu1 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-3 python3-sympy_1.9-1 python3-tk_3.9.10-1 python3-tz_2021.3-1 python3-ufolib2_0.13.1+dfsg1-1 python3.10_3.10.2-1 python3.10-dev_3.10.2-1 python3.10-minimal_3.10.2-1 python3.9_3.9.10-1 python3.9-dev_3.9.10-1 python3.9-minimal_3.9.10-1 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-cctbx-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 scons_4.0.1+dfsg-2 sed_4.8-1ubuntu1 sensible-utils_0.0.17 sfftw-dev_2.1.5-6 sfftw2_2.1.5-6 systemd_249.9-0ubuntu2 systemd-sysv_249.9-0ubuntu2 systemd-timesyncd_249.9-0ubuntu2 sysvinit-utils_3.01-1ubuntu1 tar_1.34+dfsg-1build2 tk8.6-blt2.5_2.5.3+dfsg-4.1build1 tzdata_2021e-1ubuntu1 ubuntu-keyring_2021.03.26 ucf_3.0043 unicode-data_14.0.0-1.1 usrmerge_25ubuntu2 util-linux_2.37.2-4ubuntu1 x11-common_1:7.7+23ubuntu1 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 zlib1g-dev_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Feb 13 09:32:51 2022 UTC gpgv: using RSA key 7F71C1E9C78E735D0360C6CCF167E43C8143B682 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./cctbx_2021.12+ds1-2.dsc dpkg-source: info: extracting cctbx in /<>/cctbx-2021.12+ds1 dpkg-source: info: unpacking cctbx_2021.12+ds1.orig.tar.xz dpkg-source: info: unpacking cctbx_2021.12+ds1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying scons_soname.patch dpkg-source: info: applying workaround_env_config.patch dpkg-source: info: applying adding-setup_py.patch dpkg-source: info: applying system_libs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23162307 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23162307 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23162307 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2021.12+ds1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/cctbx-2021.12+ds1' dh_auto_clean W: pybuild base:266: missing command (plugin=custom, method=clean, interpreter=python3.9, version=3.9) W: pybuild base:266: missing command (plugin=custom, method=clean, interpreter=python3.10, version=3.10) rm -f -r /<>/cctbx-2021.12+ds1/build find . -name __pycache__ -type d -exec rm -rf {} \; make[1]: Leaving directory '/<>/cctbx-2021.12+ds1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild W: pybuild base:266: missing command (plugin=custom, method=configure, interpreter=python3.9, version=3.9) W: pybuild base:266: missing command (plugin=custom, method=configure, interpreter=python3.10, version=3.10) debian/rules override_dh_auto_build make[1]: Entering directory '/<>/cctbx-2021.12+ds1' python3 setup.py build /<>/cctbx-2021.12+ds1/setup.py:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension No entry for terminal type "unknown"; using dumb terminal settings. running build running build_py file cctbx/stdlib.py (for module stdlib) not found creating build creating build/lib.linux-aarch64-3.10 creating build/lib.linux-aarch64-3.10/boost copying with modification boost_adaptbx/boost/__init__.py -> build/lib.linux-aarch64-3.10/boost/__init__.py copying with modification boost_adaptbx/boost/std_pair.py -> build/lib.linux-aarch64-3.10/boost/std_pair.py copying with modification boost_adaptbx/boost/rational.py -> build/lib.linux-aarch64-3.10/boost/rational.py copying with modification boost_adaptbx/boost/optional.py -> build/lib.linux-aarch64-3.10/boost/optional.py copying with modification boost_adaptbx/boost/python.py -> build/lib.linux-aarch64-3.10/boost/python.py copying with modification boost_adaptbx/boost/tuple.py -> build/lib.linux-aarch64-3.10/boost/tuple.py creating build/lib.linux-aarch64-3.10/clipper copying with modification clipper_adaptbx/clipper/__init__.py -> build/lib.linux-aarch64-3.10/clipper/__init__.py copying with modification clipper_adaptbx/clipper/tst_hendrickson_lattman.py -> build/lib.linux-aarch64-3.10/clipper/tst_hendrickson_lattman.py copying with modification clipper_adaptbx/clipper/tst_sigmaa.py -> build/lib.linux-aarch64-3.10/clipper/tst_sigmaa.py creating build/lib.linux-aarch64-3.10/covariance copying with modification cctbx/covariance/__init__.py -> build/lib.linux-aarch64-3.10/covariance/__init__.py creating build/lib.linux-aarch64-3.10/development copying with modification cctbx/development/random_structure.py -> build/lib.linux-aarch64-3.10/development/random_structure.py copying with modification cctbx/development/fmt_utils.py -> build/lib.linux-aarch64-3.10/development/fmt_utils.py copying cctbx/development/__init__.py -> build/lib.linux-aarch64-3.10/development copying with modification cctbx/development/make_settings.py -> build/lib.linux-aarch64-3.10/development/make_settings.py copying with modification cctbx/development/tst_cns_epsilon.py -> build/lib.linux-aarch64-3.10/development/tst_cns_epsilon.py copying with modification cctbx/development/run_shelx76.py -> build/lib.linux-aarch64-3.10/development/run_shelx76.py copying with modification cctbx/development/structure_factor_utils.py -> build/lib.linux-aarch64-3.10/development/structure_factor_utils.py copying with modification cctbx/development/tst_cns_hl.py -> build/lib.linux-aarch64-3.10/development/tst_cns_hl.py copying with modification cctbx/development/electron_density_sampling.py -> build/lib.linux-aarch64-3.10/development/electron_density_sampling.py copying with modification cctbx/development/space_group_option_parser.py -> build/lib.linux-aarch64-3.10/development/space_group_option_parser.py copying with modification cctbx/development/direct_or_fft.py -> build/lib.linux-aarch64-3.10/development/direct_or_fft.py copying with modification cctbx/development/approx_amplitude_vs_resolution.py -> build/lib.linux-aarch64-3.10/development/approx_amplitude_vs_resolution.py copying with modification cctbx/development/run_shelx.py -> build/lib.linux-aarch64-3.10/development/run_shelx.py copying with modification cctbx/development/github.py -> build/lib.linux-aarch64-3.10/development/github.py copying with modification cctbx/development/cns_density_modification.py -> build/lib.linux-aarch64-3.10/development/cns_density_modification.py copying with modification cctbx/development/create_models_or_maps.py -> build/lib.linux-aarch64-3.10/development/create_models_or_maps.py copying with modification cctbx/development/make_cns_input.py -> build/lib.linux-aarch64-3.10/development/make_cns_input.py copying with modification cctbx/development/debug_utils.py -> build/lib.linux-aarch64-3.10/development/debug_utils.py creating build/lib.linux-aarch64-3.10/maptbx copying with modification cctbx/maptbx/bcr.py -> build/lib.linux-aarch64-3.10/maptbx/bcr.py copying with modification cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/lib.linux-aarch64-3.10/maptbx/tst_map_peak_3d_as_2d.py copying with modification cctbx/maptbx/__init__.py -> build/lib.linux-aarch64-3.10/maptbx/__init__.py copying with modification cctbx/maptbx/tst_atom_curves.py -> build/lib.linux-aarch64-3.10/maptbx/tst_atom_curves.py copying with modification cctbx/maptbx/minimization.py -> build/lib.linux-aarch64-3.10/maptbx/minimization.py copying with modification cctbx/maptbx/auto_sharpen.py -> build/lib.linux-aarch64-3.10/maptbx/auto_sharpen.py copying with modification cctbx/maptbx/tst_interpolation_2.py -> build/lib.linux-aarch64-3.10/maptbx/tst_interpolation_2.py copying with modification cctbx/maptbx/resolution_from_map_and_model.py -> build/lib.linux-aarch64-3.10/maptbx/resolution_from_map_and_model.py copying with modification cctbx/maptbx/prepare_map_for_docking.py -> build/lib.linux-aarch64-3.10/maptbx/prepare_map_for_docking.py copying with modification cctbx/maptbx/tst_real_space_refinement_simple.py -> build/lib.linux-aarch64-3.10/maptbx/tst_real_space_refinement_simple.py copying with modification cctbx/maptbx/real_space_refinement_simple.py -> build/lib.linux-aarch64-3.10/maptbx/real_space_refinement_simple.py copying with modification cctbx/maptbx/tst_target_and_gradients.py -> build/lib.linux-aarch64-3.10/maptbx/tst_target_and_gradients.py copying with modification cctbx/maptbx/tst_mask.py -> build/lib.linux-aarch64-3.10/maptbx/tst_mask.py copying with modification cctbx/maptbx/map_symmetry.py -> build/lib.linux-aarch64-3.10/maptbx/map_symmetry.py copying with modification cctbx/maptbx/tst_asymmetric_map.py -> build/lib.linux-aarch64-3.10/maptbx/tst_asymmetric_map.py copying with modification cctbx/maptbx/box.py -> build/lib.linux-aarch64-3.10/maptbx/box.py copying with modification cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/lib.linux-aarch64-3.10/maptbx/tst_atom_radius_as_central_peak_width.py copying with modification cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/lib.linux-aarch64-3.10/maptbx/tst_resolution_from_map_and_model.py copying with modification cctbx/maptbx/mem.py -> build/lib.linux-aarch64-3.10/maptbx/mem.py copying with modification cctbx/maptbx/refine_sharpening.py -> build/lib.linux-aarch64-3.10/maptbx/refine_sharpening.py copying with modification cctbx/maptbx/tst_peak_volume_estimate.py -> build/lib.linux-aarch64-3.10/maptbx/tst_peak_volume_estimate.py copying with modification cctbx/maptbx/tst_bcr.py -> build/lib.linux-aarch64-3.10/maptbx/tst_bcr.py copying with modification cctbx/maptbx/refine_scales_errors.py -> build/lib.linux-aarch64-3.10/maptbx/refine_scales_errors.py copying with modification cctbx/maptbx/segment_and_split_map.py -> build/lib.linux-aarch64-3.10/maptbx/segment_and_split_map.py copying with modification cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/lib.linux-aarch64-3.10/maptbx/tst_get_percentile_cutoffs.py copying with modification cctbx/maptbx/tst_ccp.py -> build/lib.linux-aarch64-3.10/maptbx/tst_ccp.py copying with modification cctbx/maptbx/tst_interpolation.py -> build/lib.linux-aarch64-3.10/maptbx/tst_interpolation.py copying with modification cctbx/maptbx/mask.py -> build/lib.linux-aarch64-3.10/maptbx/mask.py creating build/lib.linux-aarch64-3.10/eltbx copying with modification cctbx/eltbx/distance_based_connectivity.py -> build/lib.linux-aarch64-3.10/eltbx/distance_based_connectivity.py copying with modification cctbx/eltbx/chemical_elements.py -> build/lib.linux-aarch64-3.10/eltbx/chemical_elements.py copying with modification cctbx/eltbx/formula.py -> build/lib.linux-aarch64-3.10/eltbx/formula.py copying cctbx/eltbx/__init__.py -> build/lib.linux-aarch64-3.10/eltbx copying with modification cctbx/eltbx/e_scattering.py -> build/lib.linux-aarch64-3.10/eltbx/e_scattering.py copying with modification cctbx/eltbx/tiny_pse.py -> build/lib.linux-aarch64-3.10/eltbx/tiny_pse.py copying with modification cctbx/eltbx/gaussian_fit.py -> build/lib.linux-aarch64-3.10/eltbx/gaussian_fit.py copying with modification cctbx/eltbx/neutron.py -> build/lib.linux-aarch64-3.10/eltbx/neutron.py copying with modification cctbx/eltbx/wavelengths.py -> build/lib.linux-aarch64-3.10/eltbx/wavelengths.py copying with modification cctbx/eltbx/van_der_waals_radii.py -> build/lib.linux-aarch64-3.10/eltbx/van_der_waals_radii.py copying with modification cctbx/eltbx/attenuation_coefficient.py -> build/lib.linux-aarch64-3.10/eltbx/attenuation_coefficient.py copying with modification cctbx/eltbx/sasaki.py -> build/lib.linux-aarch64-3.10/eltbx/sasaki.py copying with modification cctbx/eltbx/fp_fdp.py -> build/lib.linux-aarch64-3.10/eltbx/fp_fdp.py copying with modification cctbx/eltbx/henke.py -> build/lib.linux-aarch64-3.10/eltbx/henke.py copying with modification cctbx/eltbx/icsd_radii.py -> build/lib.linux-aarch64-3.10/eltbx/icsd_radii.py copying with modification cctbx/eltbx/read_custom_scattering_dict.py -> build/lib.linux-aarch64-3.10/eltbx/read_custom_scattering_dict.py copying with modification cctbx/eltbx/covalent_radii.py -> build/lib.linux-aarch64-3.10/eltbx/covalent_radii.py creating build/lib.linux-aarch64-3.10/masks copying with modification cctbx/masks/__init__.py -> build/lib.linux-aarch64-3.10/masks/__init__.py creating build/lib.linux-aarch64-3.10/regression copying with modification cctbx/regression/tst_xray_minimization_failure.py -> build/lib.linux-aarch64-3.10/regression/tst_xray_minimization_failure.py copying with modification cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/lib.linux-aarch64-3.10/regression/tst_fourier_transform_real_part_at_x.py copying with modification cctbx/regression/tst_grouped_data.py -> build/lib.linux-aarch64-3.10/regression/tst_grouped_data.py copying with modification cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/lib.linux-aarch64-3.10/regression/tst_space_group_type_tidy_cb_op_t.py copying with modification cctbx/regression/tst_xray_minimization.py -> build/lib.linux-aarch64-3.10/regression/tst_xray_minimization.py copying with modification cctbx/regression/tst_fast_nv1995.py -> build/lib.linux-aarch64-3.10/regression/tst_fast_nv1995.py copying with modification cctbx/regression/tst_show_cosets.py -> build/lib.linux-aarch64-3.10/regression/tst_show_cosets.py copying with modification cctbx/regression/tst_miller_statistics.py -> build/lib.linux-aarch64-3.10/regression/tst_miller_statistics.py copying cctbx/regression/__init__.py -> build/lib.linux-aarch64-3.10/regression copying with modification cctbx/regression/tst_map_is_periodic.py -> build/lib.linux-aarch64-3.10/regression/tst_map_is_periodic.py copying with modification cctbx/regression/tst_xray.py -> build/lib.linux-aarch64-3.10/regression/tst_xray.py copying with modification cctbx/regression/tst_grm_pickling.py -> build/lib.linux-aarch64-3.10/regression/tst_grm_pickling.py copying with modification cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/lib.linux-aarch64-3.10/regression/tst_itvb_2001_table_a1427_hall_symbols.py copying with modification cctbx/regression/tst_sf_low_res_accuracy.py -> build/lib.linux-aarch64-3.10/regression/tst_sf_low_res_accuracy.py copying with modification cctbx/regression/tst_sgtbx_denominators.py -> build/lib.linux-aarch64-3.10/regression/tst_sgtbx_denominators.py copying with modification cctbx/regression/tst_sgtbx.py -> build/lib.linux-aarch64-3.10/regression/tst_sgtbx.py copying with modification cctbx/regression/tst_maptbx_box.py -> build/lib.linux-aarch64-3.10/regression/tst_maptbx_box.py copying with modification cctbx/regression/tst_mem.py -> build/lib.linux-aarch64-3.10/regression/tst_mem.py copying with modification cctbx/regression/tst_maptbx_mask.py -> build/lib.linux-aarch64-3.10/regression/tst_maptbx_mask.py copying with modification cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/lib.linux-aarch64-3.10/regression/tst_sgtbx_special_op_simplifier.py copying with modification cctbx/regression/tst_find_best_cell.py -> build/lib.linux-aarch64-3.10/regression/tst_find_best_cell.py copying with modification cctbx/regression/tst_maptbx_structure_factors.py -> build/lib.linux-aarch64-3.10/regression/tst_maptbx_structure_factors.py copying with modification cctbx/regression/tst_twin_target.py -> build/lib.linux-aarch64-3.10/regression/tst_twin_target.py copying with modification cctbx/regression/tst_miller_merge_equivalents.py -> build/lib.linux-aarch64-3.10/regression/tst_miller_merge_equivalents.py copying with modification cctbx/regression/tst_mem_2.py -> build/lib.linux-aarch64-3.10/regression/tst_mem_2.py copying with modification cctbx/regression/tst_crystal_close_packing.py -> build/lib.linux-aarch64-3.10/regression/tst_crystal_close_packing.py copying with modification cctbx/regression/tst_xray_target_functors.py -> build/lib.linux-aarch64-3.10/regression/tst_xray_target_functors.py copying with modification cctbx/regression/tst_miller_double_step_filtration.py -> build/lib.linux-aarch64-3.10/regression/tst_miller_double_step_filtration.py copying with modification cctbx/regression/tst_sgtbx_site_constraints.py -> build/lib.linux-aarch64-3.10/regression/tst_sgtbx_site_constraints.py copying with modification cctbx/regression/tst_grm_modifications.py -> build/lib.linux-aarch64-3.10/regression/tst_grm_modifications.py copying with modification cctbx/regression/tst_sgtbx_subgroups.py -> build/lib.linux-aarch64-3.10/regression/tst_sgtbx_subgroups.py copying with modification cctbx/regression/tst_geometry_restraints.py -> build/lib.linux-aarch64-3.10/regression/tst_geometry_restraints.py copying with modification cctbx/regression/tst_miller.py -> build/lib.linux-aarch64-3.10/regression/tst_miller.py copying with modification cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/lib.linux-aarch64-3.10/regression/tst_sgtbx_lattice_symmetry.py copying with modification cctbx/regression/tst_wilson_plot.py -> build/lib.linux-aarch64-3.10/regression/tst_wilson_plot.py copying with modification cctbx/regression/tst_pointgroup_tools.py -> build/lib.linux-aarch64-3.10/regression/tst_pointgroup_tools.py copying with modification cctbx/regression/tst_sgtbx_harker.py -> build/lib.linux-aarch64-3.10/regression/tst_sgtbx_harker.py copying with modification cctbx/regression/tst_sphericity.py -> build/lib.linux-aarch64-3.10/regression/tst_sphericity.py copying with modification cctbx/regression/tst_prepare_map_for_docking.py -> build/lib.linux-aarch64-3.10/regression/tst_prepare_map_for_docking.py copying with modification cctbx/regression/tst_direct_scaling.py -> build/lib.linux-aarch64-3.10/regression/tst_direct_scaling.py copying with modification cctbx/regression/tst_geometry_restraints_2.py -> build/lib.linux-aarch64-3.10/regression/tst_geometry_restraints_2.py copying with modification cctbx/regression/tst_miller_data_manipulation.py -> build/lib.linux-aarch64-3.10/regression/tst_miller_data_manipulation.py copying with modification cctbx/regression/tst_adp_constraints.py -> build/lib.linux-aarch64-3.10/regression/tst_adp_constraints.py copying with modification cctbx/regression/tst_change_basis.py -> build/lib.linux-aarch64-3.10/regression/tst_change_basis.py copying with modification cctbx/regression/tst_math_module.py -> build/lib.linux-aarch64-3.10/regression/tst_math_module.py copying with modification cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/lib.linux-aarch64-3.10/regression/tst_geometry_restraints_lbfgs.py copying with modification cctbx/regression/tst_statistics_graphs.py -> build/lib.linux-aarch64-3.10/regression/tst_statistics_graphs.py copying with modification cctbx/regression/tst_create_models_or_maps.py -> build/lib.linux-aarch64-3.10/regression/tst_create_models_or_maps.py copying with modification cctbx/regression/tst_connectivity.py -> build/lib.linux-aarch64-3.10/regression/tst_connectivity.py copying with modification cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/lib.linux-aarch64-3.10/regression/tst_map_weights_for_symmetry_summation.py copying with modification cctbx/regression/tst_pair_asu_table.py -> build/lib.linux-aarch64-3.10/regression/tst_pair_asu_table.py copying with modification cctbx/regression/tst_emma.py -> build/lib.linux-aarch64-3.10/regression/tst_emma.py copying with modification cctbx/regression/tst_expand_to_p1.py -> build/lib.linux-aarch64-3.10/regression/tst_expand_to_p1.py copying with modification cctbx/regression/tst_diffuse.py -> build/lib.linux-aarch64-3.10/regression/tst_diffuse.py copying with modification cctbx/regression/tst_weighting_schemes.py -> build/lib.linux-aarch64-3.10/regression/tst_weighting_schemes.py copying with modification cctbx/regression/tst_amplitude_normalisation.py -> build/lib.linux-aarch64-3.10/regression/tst_amplitude_normalisation.py copying with modification cctbx/regression/tst_xray_derivatives.py -> build/lib.linux-aarch64-3.10/regression/tst_xray_derivatives.py copying with modification cctbx/regression/tst_r_free_utils.py -> build/lib.linux-aarch64-3.10/regression/tst_r_free_utils.py copying with modification cctbx/regression/tst_xray_fast_gradients.py -> build/lib.linux-aarch64-3.10/regression/tst_xray_fast_gradients.py copying with modification cctbx/regression/tst_adp_constraints_cartesian.py -> build/lib.linux-aarch64-3.10/regression/tst_adp_constraints_cartesian.py copying with modification cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/lib.linux-aarch64-3.10/regression/tst_sgtbx_tidy_pickling.py copying with modification cctbx/regression/tst_krivy_gruber.py -> build/lib.linux-aarch64-3.10/regression/tst_krivy_gruber.py copying with modification cctbx/regression/tst_connectivity_allsym.py -> build/lib.linux-aarch64-3.10/regression/tst_connectivity_allsym.py copying with modification cctbx/regression/tst_coordination_sequences.py -> build/lib.linux-aarch64-3.10/regression/tst_coordination_sequences.py copying with modification cctbx/regression/tst_sampled_model_density.py -> build/lib.linux-aarch64-3.10/regression/tst_sampled_model_density.py copying with modification cctbx/regression/tst_f_model.py -> build/lib.linux-aarch64-3.10/regression/tst_f_model.py copying with modification cctbx/regression/tst_web_change_basis.py -> build/lib.linux-aarch64-3.10/regression/tst_web_change_basis.py copying with modification cctbx/regression/tst_fcalc_fft_stability.py -> build/lib.linux-aarch64-3.10/regression/tst_fcalc_fft_stability.py copying with modification cctbx/regression/tst_reflection_statistics.py -> build/lib.linux-aarch64-3.10/regression/tst_reflection_statistics.py copying with modification cctbx/regression/tst_direct_space_asu.py -> build/lib.linux-aarch64-3.10/regression/tst_direct_space_asu.py copying with modification cctbx/regression/tst_reciprocal_space_asu.py -> build/lib.linux-aarch64-3.10/regression/tst_reciprocal_space_asu.py copying with modification cctbx/regression/tst_miller_fft_map.py -> build/lib.linux-aarch64-3.10/regression/tst_miller_fft_map.py copying with modification cctbx/regression/tst_miller_lookup_utils.py -> build/lib.linux-aarch64-3.10/regression/tst_miller_lookup_utils.py copying with modification cctbx/regression/tst_adp_aniso_restraints.py -> build/lib.linux-aarch64-3.10/regression/tst_adp_aniso_restraints.py copying with modification cctbx/regression/tst_refine_xray_curvs.py -> build/lib.linux-aarch64-3.10/regression/tst_refine_xray_curvs.py copying with modification cctbx/regression/tst_crystal.py -> build/lib.linux-aarch64-3.10/regression/tst_crystal.py copying with modification cctbx/regression/tst_french_wilson.py -> build/lib.linux-aarch64-3.10/regression/tst_french_wilson.py copying with modification cctbx/regression/tst_loc_res.py -> build/lib.linux-aarch64-3.10/regression/tst_loc_res.py copying with modification cctbx/regression/tst_crystal_asu_clusters.py -> build/lib.linux-aarch64-3.10/regression/tst_crystal_asu_clusters.py copying with modification cctbx/regression/tst_triplet_generator.py -> build/lib.linux-aarch64-3.10/regression/tst_triplet_generator.py creating build/lib.linux-aarch64-3.10/neutron copying with modification cctbx/neutron/__init__.py -> build/lib.linux-aarch64-3.10/neutron/__init__.py creating build/lib.linux-aarch64-3.10/omz copying with modification cctbx/omz/__init__.py -> build/lib.linux-aarch64-3.10/omz/__init__.py copying with modification cctbx/omz/bfgs.py -> build/lib.linux-aarch64-3.10/omz/bfgs.py copying with modification cctbx/omz/cif_refine.py -> build/lib.linux-aarch64-3.10/omz/cif_refine.py copying with modification cctbx/omz/eval_iso_vs_refined.py -> build/lib.linux-aarch64-3.10/omz/eval_iso_vs_refined.py copying with modification cctbx/omz/cod_refine.py -> build/lib.linux-aarch64-3.10/omz/cod_refine.py copying with modification cctbx/omz/tst_bfgs.py -> build/lib.linux-aarch64-3.10/omz/tst_bfgs.py copying with modification cctbx/omz/cod_select_and_pickle.py -> build/lib.linux-aarch64-3.10/omz/cod_select_and_pickle.py copying with modification cctbx/omz/tardy_adaptor.py -> build/lib.linux-aarch64-3.10/omz/tardy_adaptor.py copying with modification cctbx/omz/dev.py -> build/lib.linux-aarch64-3.10/omz/dev.py copying with modification cctbx/omz/tst_dev.py -> build/lib.linux-aarch64-3.10/omz/tst_dev.py copying with modification cctbx/omz/pdb_dev.py -> build/lib.linux-aarch64-3.10/omz/pdb_dev.py creating build/lib.linux-aarch64-3.10/examples copying with modification cctbx/examples/space_group_matrices.py -> build/lib.linux-aarch64-3.10/examples/space_group_matrices.py copying with modification cctbx/examples/space_subgroups.py -> build/lib.linux-aarch64-3.10/examples/space_subgroups.py copying with modification cctbx/examples/tst_structure_factor_derivatives.py -> build/lib.linux-aarch64-3.10/examples/tst_structure_factor_derivatives.py copying with modification cctbx/examples/lebedev_2005_perturbation.py -> build/lib.linux-aarch64-3.10/examples/lebedev_2005_perturbation.py copying with modification cctbx/examples/site_symmetry_constraints.py -> build/lib.linux-aarch64-3.10/examples/site_symmetry_constraints.py copying with modification cctbx/examples/exp_i_alpha_derivatives.py -> build/lib.linux-aarch64-3.10/examples/exp_i_alpha_derivatives.py copying with modification cctbx/examples/site_symmetry_table.py -> build/lib.linux-aarch64-3.10/examples/site_symmetry_table.py copying with modification cctbx/examples/tst_phase_o_phrenia.py -> build/lib.linux-aarch64-3.10/examples/tst_phase_o_phrenia.py copying with modification cctbx/examples/phase_o_phrenia.py -> build/lib.linux-aarch64-3.10/examples/phase_o_phrenia.py copying cctbx/examples/__init__.py -> build/lib.linux-aarch64-3.10/examples copying with modification cctbx/examples/unit_cell_minimizers.py -> build/lib.linux-aarch64-3.10/examples/unit_cell_minimizers.py copying with modification cctbx/examples/random_puckers.py -> build/lib.linux-aarch64-3.10/examples/random_puckers.py copying with modification cctbx/examples/g_exp_i_partial_derivatives.py -> build/lib.linux-aarch64-3.10/examples/g_exp_i_partial_derivatives.py copying with modification cctbx/examples/g_exp_i_alpha_derivatives.py -> build/lib.linux-aarch64-3.10/examples/g_exp_i_alpha_derivatives.py copying with modification cctbx/examples/map_skewness.py -> build/lib.linux-aarch64-3.10/examples/map_skewness.py copying with modification cctbx/examples/quartz_structure.py -> build/lib.linux-aarch64-3.10/examples/quartz_structure.py copying with modification cctbx/examples/symops_530.py -> build/lib.linux-aarch64-3.10/examples/symops_530.py copying with modification cctbx/examples/cr2o3_consistency_checks.py -> build/lib.linux-aarch64-3.10/examples/cr2o3_consistency_checks.py copying with modification cctbx/examples/list_non_principal_continuous_shifts.py -> build/lib.linux-aarch64-3.10/examples/list_non_principal_continuous_shifts.py copying with modification cctbx/examples/cr2o3_primitive_cell.py -> build/lib.linux-aarch64-3.10/examples/cr2o3_primitive_cell.py copying with modification cctbx/examples/getting_started.py -> build/lib.linux-aarch64-3.10/examples/getting_started.py copying with modification cctbx/examples/structure_factor_derivatives_2.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_derivatives_2.py copying with modification cctbx/examples/sub_group_graph.py -> build/lib.linux-aarch64-3.10/examples/sub_group_graph.py copying with modification cctbx/examples/location_part.py -> build/lib.linux-aarch64-3.10/examples/location_part.py copying with modification cctbx/examples/tst_structure_factor_derivatives_2.py -> build/lib.linux-aarch64-3.10/examples/tst_structure_factor_derivatives_2.py copying with modification cctbx/examples/tst_space_subgroups.py -> build/lib.linux-aarch64-3.10/examples/tst_space_subgroups.py copying with modification cctbx/examples/ccp4_map.py -> build/lib.linux-aarch64-3.10/examples/ccp4_map.py copying with modification cctbx/examples/change_hand_p31.py -> build/lib.linux-aarch64-3.10/examples/change_hand_p31.py copying with modification cctbx/examples/fft_map_electron_density_around_atom.py -> build/lib.linux-aarch64-3.10/examples/fft_map_electron_density_around_atom.py copying with modification cctbx/examples/structure_factor_derivatives.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_derivatives.py copying with modification cctbx/examples/miller_transform.py -> build/lib.linux-aarch64-3.10/examples/miller_transform.py copying with modification cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/lib.linux-aarch64-3.10/examples/trigonal_r_vs_tetragonal_i.py copying with modification cctbx/examples/random_f_calc.py -> build/lib.linux-aarch64-3.10/examples/random_f_calc.py copying with modification cctbx/examples/find_distances_using_cpp_objects.py -> build/lib.linux-aarch64-3.10/examples/find_distances_using_cpp_objects.py copying with modification cctbx/examples/reduced_cell_two_folds.py -> build/lib.linux-aarch64-3.10/examples/reduced_cell_two_folds.py copying with modification cctbx/examples/tst_structure_factor_derivatives_3.py -> build/lib.linux-aarch64-3.10/examples/tst_structure_factor_derivatives_3.py copying with modification cctbx/examples/f_model_example.py -> build/lib.linux-aarch64-3.10/examples/f_model_example.py copying with modification cctbx/examples/miller_common_sets.py -> build/lib.linux-aarch64-3.10/examples/miller_common_sets.py copying with modification cctbx/examples/adp_symmetry_constraints.py -> build/lib.linux-aarch64-3.10/examples/adp_symmetry_constraints.py copying with modification cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/lib.linux-aarch64-3.10/examples/tst_g_exp_i_alpha_derivatives.py copying with modification cctbx/examples/view_fft_map.py -> build/lib.linux-aarch64-3.10/examples/view_fft_map.py copying with modification cctbx/examples/neutron_structure_factors.py -> build/lib.linux-aarch64-3.10/examples/neutron_structure_factors.py copying with modification cctbx/examples/analyze_adp.py -> build/lib.linux-aarch64-3.10/examples/analyze_adp.py copying with modification cctbx/examples/structure_factor_derivatives_4.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_derivatives_4.py copying with modification cctbx/examples/tst_structure_factor_derivatives_4.py -> build/lib.linux-aarch64-3.10/examples/tst_structure_factor_derivatives_4.py copying with modification cctbx/examples/unit_cell_refinement.py -> build/lib.linux-aarch64-3.10/examples/unit_cell_refinement.py copying with modification cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/lib.linux-aarch64-3.10/examples/find_sys_abs_equiv_space_groups.py copying with modification cctbx/examples/steve_collins.py -> build/lib.linux-aarch64-3.10/examples/steve_collins.py copying with modification cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/lib.linux-aarch64-3.10/examples/le_page_1982_vs_lebedev_2005.py copying with modification cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/lib.linux-aarch64-3.10/examples/tst_exp_i_alpha_derivatives.py copying with modification cctbx/examples/convert_ccp4_symop_lib.py -> build/lib.linux-aarch64-3.10/examples/convert_ccp4_symop_lib.py copying with modification cctbx/examples/all_axes.py -> build/lib.linux-aarch64-3.10/examples/all_axes.py copying with modification cctbx/examples/hirshfeld_test.py -> build/lib.linux-aarch64-3.10/examples/hirshfeld_test.py copying with modification cctbx/examples/structure_factor_derivatives_3.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_derivatives_3.py copying with modification cctbx/examples/maximum_subgroups.py -> build/lib.linux-aarch64-3.10/examples/maximum_subgroups.py creating build/lib.linux-aarch64-3.10/geometry copying with modification cctbx/geometry/__init__.py -> build/lib.linux-aarch64-3.10/geometry/__init__.py creating build/lib.linux-aarch64-3.10/web copying with modification cctbx/web/change_basis.py -> build/lib.linux-aarch64-3.10/web/change_basis.py copying with modification cctbx/web/iotbx_cif_validate.py -> build/lib.linux-aarch64-3.10/web/iotbx_cif_validate.py copying with modification cctbx/web/frac_cart.py -> build/lib.linux-aarch64-3.10/web/frac_cart.py copying with modification cctbx/web/phase_o_phrenia.py -> build/lib.linux-aarch64-3.10/web/phase_o_phrenia.py copying cctbx/web/__init__.py -> build/lib.linux-aarch64-3.10/web copying with modification cctbx/web/lattice_symmetry.py -> build/lib.linux-aarch64-3.10/web/lattice_symmetry.py copying with modification cctbx/web/structure_factors_pdb.py -> build/lib.linux-aarch64-3.10/web/structure_factors_pdb.py copying with modification cctbx/web/dispatcher.py -> build/lib.linux-aarch64-3.10/web/dispatcher.py copying with modification cctbx/web/shelx.py -> build/lib.linux-aarch64-3.10/web/shelx.py copying with modification cctbx/web/libtbx_help.py -> build/lib.linux-aarch64-3.10/web/libtbx_help.py copying with modification cctbx/web/cgi_utils.py -> build/lib.linux-aarch64-3.10/web/cgi_utils.py copying with modification cctbx/web/change_hand.py -> build/lib.linux-aarch64-3.10/web/change_hand.py copying with modification cctbx/web/wyckoff.py -> build/lib.linux-aarch64-3.10/web/wyckoff.py copying with modification cctbx/web/multiple_cell.py -> build/lib.linux-aarch64-3.10/web/multiple_cell.py copying with modification cctbx/web/replay.py -> build/lib.linux-aarch64-3.10/web/replay.py copying with modification cctbx/web/browse_settings.py -> build/lib.linux-aarch64-3.10/web/browse_settings.py copying with modification cctbx/web/emma.py -> build/lib.linux-aarch64-3.10/web/emma.py copying with modification cctbx/web/structure_factors.py -> build/lib.linux-aarch64-3.10/web/structure_factors.py copying with modification cctbx/web/change_setting.py -> build/lib.linux-aarch64-3.10/web/change_setting.py copying with modification cctbx/web/all_axes.py -> build/lib.linux-aarch64-3.10/web/all_axes.py copying with modification cctbx/web/explore_symmetry.py -> build/lib.linux-aarch64-3.10/web/explore_symmetry.py copying with modification cctbx/web/io_utils.py -> build/lib.linux-aarch64-3.10/web/io_utils.py creating build/lib.linux-aarch64-3.10/xray copying with modification cctbx/xray/__init__.py -> build/lib.linux-aarch64-3.10/xray/__init__.py copying with modification cctbx/xray/minimization.py -> build/lib.linux-aarch64-3.10/xray/minimization.py copying with modification cctbx/xray/observation_types.py -> build/lib.linux-aarch64-3.10/xray/observation_types.py copying with modification cctbx/xray/target_functors.py -> build/lib.linux-aarch64-3.10/xray/target_functors.py copying with modification cctbx/xray/scatterer.py -> build/lib.linux-aarch64-3.10/xray/scatterer.py copying with modification cctbx/xray/weighting_schemes.py -> build/lib.linux-aarch64-3.10/xray/weighting_schemes.py copying with modification cctbx/xray/ext.py -> build/lib.linux-aarch64-3.10/xray/ext.py copying with modification cctbx/xray/structure.py -> build/lib.linux-aarch64-3.10/xray/structure.py creating build/lib.linux-aarch64-3.10/merging copying with modification cctbx/merging/__init__.py -> build/lib.linux-aarch64-3.10/merging/__init__.py copying with modification cctbx/merging/brehm_diederichs.py -> build/lib.linux-aarch64-3.10/merging/brehm_diederichs.py creating build/lib.linux-aarch64-3.10/geometry_restraints copying with modification cctbx/geometry_restraints/tst_ext.py -> build/lib.linux-aarch64-3.10/geometry_restraints/tst_ext.py copying with modification cctbx/geometry_restraints/__init__.py -> build/lib.linux-aarch64-3.10/geometry_restraints/__init__.py copying with modification cctbx/geometry_restraints/nonbonded_overlaps.py -> build/lib.linux-aarch64-3.10/geometry_restraints/nonbonded_overlaps.py copying with modification cctbx/geometry_restraints/distance_least_squares.py -> build/lib.linux-aarch64-3.10/geometry_restraints/distance_least_squares.py copying with modification cctbx/geometry_restraints/lbfgs.py -> build/lib.linux-aarch64-3.10/geometry_restraints/lbfgs.py copying with modification cctbx/geometry_restraints/tst_angle_derivs.py -> build/lib.linux-aarch64-3.10/geometry_restraints/tst_angle_derivs.py copying with modification cctbx/geometry_restraints/tst_motif.py -> build/lib.linux-aarch64-3.10/geometry_restraints/tst_motif.py copying with modification cctbx/geometry_restraints/flags.py -> build/lib.linux-aarch64-3.10/geometry_restraints/flags.py copying with modification cctbx/geometry_restraints/energies.py -> build/lib.linux-aarch64-3.10/geometry_restraints/energies.py copying with modification cctbx/geometry_restraints/manager.py -> build/lib.linux-aarch64-3.10/geometry_restraints/manager.py copying with modification cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/lib.linux-aarch64-3.10/geometry_restraints/process_nonbonded_proxies.py copying with modification cctbx/geometry_restraints/linking_class.py -> build/lib.linux-aarch64-3.10/geometry_restraints/linking_class.py copying with modification cctbx/geometry_restraints/base_geometry.py -> build/lib.linux-aarch64-3.10/geometry_restraints/base_geometry.py copying with modification cctbx/geometry_restraints/tst_nonbonded_overlaps.py -> build/lib.linux-aarch64-3.10/geometry_restraints/tst_nonbonded_overlaps.py copying with modification cctbx/geometry_restraints/auto_linking_types.py -> build/lib.linux-aarch64-3.10/geometry_restraints/auto_linking_types.py copying with modification cctbx/geometry_restraints/tst_proxy_registry.py -> build/lib.linux-aarch64-3.10/geometry_restraints/tst_proxy_registry.py copying with modification cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/lib.linux-aarch64-3.10/geometry_restraints/tst_process_nonbonded_proxies.py copying with modification cctbx/geometry_restraints/standard_cif_links.py -> build/lib.linux-aarch64-3.10/geometry_restraints/standard_cif_links.py creating build/lib.linux-aarch64-3.10/array_family copying cctbx/array_family/__init__.py -> build/lib.linux-aarch64-3.10/array_family copying with modification cctbx/array_family/flex.py -> build/lib.linux-aarch64-3.10/array_family/flex.py creating build/lib.linux-aarch64-3.10/command_line copying with modification cctbx/command_line/cctbx_test_nightly.py -> build/lib.linux-aarch64-3.10/command_line/cctbx_test_nightly.py copying with modification cctbx/command_line/space_group_info.py -> build/lib.linux-aarch64-3.10/command_line/space_group_info.py copying cctbx/command_line/__init__.py -> build/lib.linux-aarch64-3.10/command_line copying with modification cctbx/command_line/euclidean_model_matching.py -> build/lib.linux-aarch64-3.10/command_line/euclidean_model_matching.py copying with modification cctbx/command_line/form_factor_query.py -> build/lib.linux-aarch64-3.10/command_line/form_factor_query.py copying with modification cctbx/command_line/auto_sharpen.py -> build/lib.linux-aarch64-3.10/command_line/auto_sharpen.py copying with modification cctbx/command_line/xray_structure.show.py -> build/lib.linux-aarch64-3.10/command_line/xray_structure.show.py copying with modification cctbx/command_line/cod_select_and_pickle.py -> build/lib.linux-aarch64-3.10/command_line/cod_select_and_pickle.py copying with modification cctbx/command_line/find_reticular_twin_laws.py -> build/lib.linux-aarch64-3.10/command_line/find_reticular_twin_laws.py copying with modification cctbx/command_line/samosa_join.py -> build/lib.linux-aarch64-3.10/command_line/samosa_join.py copying with modification cctbx/command_line/structure_factor_timings.py -> build/lib.linux-aarch64-3.10/command_line/structure_factor_timings.py copying with modification cctbx/command_line/brehm_diederichs.py -> build/lib.linux-aarch64-3.10/command_line/brehm_diederichs.py copying with modification cctbx/command_line/eltbx.show_fp_fdp.py -> build/lib.linux-aarch64-3.10/command_line/eltbx.show_fp_fdp.py copying with modification cctbx/command_line/subgroups.py -> build/lib.linux-aarch64-3.10/command_line/subgroups.py copying with modification cctbx/command_line/segment_and_split_map.py -> build/lib.linux-aarch64-3.10/command_line/segment_and_split_map.py copying with modification cctbx/command_line/precession_view.py -> build/lib.linux-aarch64-3.10/command_line/precession_view.py copying with modification cctbx/command_line/version.py -> build/lib.linux-aarch64-3.10/command_line/version.py copying with modification cctbx/command_line/diffuse.py -> build/lib.linux-aarch64-3.10/command_line/diffuse.py copying with modification cctbx/command_line/samosa_scale.py -> build/lib.linux-aarch64-3.10/command_line/samosa_scale.py copying with modification cctbx/command_line/wavelength_units.py -> build/lib.linux-aarch64-3.10/command_line/wavelength_units.py creating build/lib.linux-aarch64-3.10/sgtbx copying with modification cctbx/sgtbx/symbol_confidence.py -> build/lib.linux-aarch64-3.10/sgtbx/symbol_confidence.py copying with modification cctbx/sgtbx/literal_description.py -> build/lib.linux-aarch64-3.10/sgtbx/literal_description.py copying with modification cctbx/sgtbx/__init__.py -> build/lib.linux-aarch64-3.10/sgtbx/__init__.py copying with modification cctbx/sgtbx/sub_lattice_tools.py -> build/lib.linux-aarch64-3.10/sgtbx/sub_lattice_tools.py copying with modification cctbx/sgtbx/bravais_types.py -> build/lib.linux-aarch64-3.10/sgtbx/bravais_types.py copying with modification cctbx/sgtbx/harker.py -> build/lib.linux-aarch64-3.10/sgtbx/harker.py copying with modification cctbx/sgtbx/lattice_symmetry.py -> build/lib.linux-aarch64-3.10/sgtbx/lattice_symmetry.py copying with modification cctbx/sgtbx/sys_abs_equiv.py -> build/lib.linux-aarch64-3.10/sgtbx/sys_abs_equiv.py copying with modification cctbx/sgtbx/cosets.py -> build/lib.linux-aarch64-3.10/sgtbx/cosets.py copying with modification cctbx/sgtbx/pointgroup_tools.py -> build/lib.linux-aarch64-3.10/sgtbx/pointgroup_tools.py copying with modification cctbx/sgtbx/show_cosets.py -> build/lib.linux-aarch64-3.10/sgtbx/show_cosets.py copying with modification cctbx/sgtbx/plane_groups.py -> build/lib.linux-aarch64-3.10/sgtbx/plane_groups.py copying with modification cctbx/sgtbx/rational_matrices_point_groups.py -> build/lib.linux-aarch64-3.10/sgtbx/rational_matrices_point_groups.py copying with modification cctbx/sgtbx/subgroups.py -> build/lib.linux-aarch64-3.10/sgtbx/subgroups.py copying with modification cctbx/sgtbx/reticular_twin_laws.py -> build/lib.linux-aarch64-3.10/sgtbx/reticular_twin_laws.py copying with modification cctbx/sgtbx/reticular_pg_tools.py -> build/lib.linux-aarch64-3.10/sgtbx/reticular_pg_tools.py creating build/lib.linux-aarch64-3.10/crystal copying with modification cctbx/crystal/tst_ext.py -> build/lib.linux-aarch64-3.10/crystal/tst_ext.py copying with modification cctbx/crystal/distance_based_connectivity.py -> build/lib.linux-aarch64-3.10/crystal/distance_based_connectivity.py copying with modification cctbx/crystal/find_best_cell.py -> build/lib.linux-aarch64-3.10/crystal/find_best_cell.py copying with modification cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/lib.linux-aarch64-3.10/crystal/burzlaff_zimmermann_dewolff.py copying with modification cctbx/crystal/__init__.py -> build/lib.linux-aarch64-3.10/crystal/__init__.py copying with modification cctbx/crystal/coordination_sequences.py -> build/lib.linux-aarch64-3.10/crystal/coordination_sequences.py copying with modification cctbx/crystal/direct_space_asu.py -> build/lib.linux-aarch64-3.10/crystal/direct_space_asu.py copying with modification cctbx/crystal/reindex.py -> build/lib.linux-aarch64-3.10/crystal/reindex.py copying with modification cctbx/crystal/close_packing.py -> build/lib.linux-aarch64-3.10/crystal/close_packing.py copying with modification cctbx/crystal/tst_super_cell.py -> build/lib.linux-aarch64-3.10/crystal/tst_super_cell.py copying with modification cctbx/crystal/super_cell.py -> build/lib.linux-aarch64-3.10/crystal/super_cell.py copying with modification cctbx/crystal/tst_distance_based_connectivity.py -> build/lib.linux-aarch64-3.10/crystal/tst_distance_based_connectivity.py creating build/lib.linux-aarch64-3.10/uctbx copying with modification cctbx/uctbx/gruber_1973.py -> build/lib.linux-aarch64-3.10/uctbx/gruber_1973.py copying with modification cctbx/uctbx/__init__.py -> build/lib.linux-aarch64-3.10/uctbx/__init__.py copying with modification cctbx/uctbx/reduction_base.py -> build/lib.linux-aarch64-3.10/uctbx/reduction_base.py copying with modification cctbx/uctbx/krivy_gruber_1976.py -> build/lib.linux-aarch64-3.10/uctbx/krivy_gruber_1976.py copying with modification cctbx/uctbx/gruber_1973_table_1.py -> build/lib.linux-aarch64-3.10/uctbx/gruber_1973_table_1.py creating build/lib.linux-aarch64-3.10/source_generators copying cctbx/source_generators/__init__.py -> build/lib.linux-aarch64-3.10/source_generators copying with modification cctbx/source_generators/flex_fwd_h.py -> build/lib.linux-aarch64-3.10/source_generators/flex_fwd_h.py creating build/lib.linux-aarch64-3.10/macro_mol copying cctbx/macro_mol/__init__.py -> build/lib.linux-aarch64-3.10/macro_mol copying with modification cctbx/macro_mol/rotation_parameters.py -> build/lib.linux-aarch64-3.10/macro_mol/rotation_parameters.py creating build/lib.linux-aarch64-3.10/miller copying with modification cctbx/miller/__init__.py -> build/lib.linux-aarch64-3.10/miller/__init__.py copying with modification cctbx/miller/display.py -> build/lib.linux-aarch64-3.10/miller/display.py copying with modification cctbx/miller/tst_reindexing.py -> build/lib.linux-aarch64-3.10/miller/tst_reindexing.py copying with modification cctbx/miller/display2.py -> build/lib.linux-aarch64-3.10/miller/display2.py copying with modification cctbx/miller/reindexing.py -> build/lib.linux-aarch64-3.10/miller/reindexing.py copying with modification cctbx/miller/tst_map_to_asu_isym.py -> build/lib.linux-aarch64-3.10/miller/tst_map_to_asu_isym.py creating build/lib.linux-aarch64-3.10/adp_restraints copying with modification cctbx/adp_restraints/tst_ext.py -> build/lib.linux-aarch64-3.10/adp_restraints/tst_ext.py copying with modification cctbx/adp_restraints/__init__.py -> build/lib.linux-aarch64-3.10/adp_restraints/__init__.py copying with modification cctbx/adp_restraints/flags.py -> build/lib.linux-aarch64-3.10/adp_restraints/flags.py copying with modification cctbx/adp_restraints/energies.py -> build/lib.linux-aarch64-3.10/adp_restraints/energies.py creating build/lib.linux-aarch64-3.10/eltbx/development copying with modification cctbx/eltbx/development/kissel_fits.py -> build/lib.linux-aarch64-3.10/eltbx/development/kissel_fits.py copying with modification cctbx/eltbx/development/kissel_io.py -> build/lib.linux-aarch64-3.10/eltbx/development/kissel_io.py copying cctbx/eltbx/development/__init__.py -> build/lib.linux-aarch64-3.10/eltbx/development copying with modification cctbx/eltbx/development/itvc_fits.py -> build/lib.linux-aarch64-3.10/eltbx/development/itvc_fits.py copying with modification cctbx/eltbx/development/itvc_section61_io.py -> build/lib.linux-aarch64-3.10/eltbx/development/itvc_section61_io.py copying with modification cctbx/eltbx/development/rez_rez_grant.py -> build/lib.linux-aarch64-3.10/eltbx/development/rez_rez_grant.py copying with modification cctbx/eltbx/development/itvc_cross_validation.py -> build/lib.linux-aarch64-3.10/eltbx/development/itvc_cross_validation.py copying with modification cctbx/eltbx/development/itvc_approx.py -> build/lib.linux-aarch64-3.10/eltbx/development/itvc_approx.py copying with modification cctbx/eltbx/development/hydrogen_plots.py -> build/lib.linux-aarch64-3.10/eltbx/development/hydrogen_plots.py copying with modification cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/lib.linux-aarch64-3.10/eltbx/development/create_n_gaussian_raw_cpp.py copying with modification cctbx/eltbx/development/itvc_kissel.py -> build/lib.linux-aarch64-3.10/eltbx/development/itvc_kissel.py copying with modification cctbx/eltbx/development/format_gaussian_fits.py -> build/lib.linux-aarch64-3.10/eltbx/development/format_gaussian_fits.py copying with modification cctbx/eltbx/development/e_scattering_plots.py -> build/lib.linux-aarch64-3.10/eltbx/development/e_scattering_plots.py copying with modification cctbx/eltbx/development/combine_fits.py -> build/lib.linux-aarch64-3.10/eltbx/development/combine_fits.py creating build/lib.linux-aarch64-3.10/eltbx/xray_scattering copying with modification cctbx/eltbx/xray_scattering/__init__.py -> build/lib.linux-aarch64-3.10/eltbx/xray_scattering/__init__.py creating build/lib.linux-aarch64-3.10/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/__init__.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_calculus copying with modification cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_calculus/sites_derivatives.py copying with modification cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_calculus/site_derivatives.py copying with modification cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_calculus/sites_least_squares_derivatives.py copying with modification cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/lib.linux-aarch64-3.10/examples/structure_factor_calculus/u_star_derivatives.py creating build/lib.linux-aarch64-3.10/examples/merging copying with modification cctbx/examples/merging/sigma_correction.py -> build/lib.linux-aarch64-3.10/examples/merging/sigma_correction.py copying with modification cctbx/examples/merging/__init__.py -> build/lib.linux-aarch64-3.10/examples/merging/__init__.py copying with modification cctbx/examples/merging/tst_permutations.py -> build/lib.linux-aarch64-3.10/examples/merging/tst_permutations.py copying with modification cctbx/examples/merging/data_utilities.py -> build/lib.linux-aarch64-3.10/examples/merging/data_utilities.py copying with modification cctbx/examples/merging/show_results.py -> build/lib.linux-aarch64-3.10/examples/merging/show_results.py copying with modification cctbx/examples/merging/test_levenberg_sparse.py -> build/lib.linux-aarch64-3.10/examples/merging/test_levenberg_sparse.py copying with modification cctbx/examples/merging/data_subset.py -> build/lib.linux-aarch64-3.10/examples/merging/data_subset.py copying with modification cctbx/examples/merging/test1.py -> build/lib.linux-aarch64-3.10/examples/merging/test1.py copying with modification cctbx/examples/merging/task4.py -> build/lib.linux-aarch64-3.10/examples/merging/task4.py copying with modification cctbx/examples/merging/test_cc_half.py -> build/lib.linux-aarch64-3.10/examples/merging/test_cc_half.py creating build/lib.linux-aarch64-3.10/web/asu_gallery copying with modification cctbx/web/asu_gallery/guide_to_notation.py -> build/lib.linux-aarch64-3.10/web/asu_gallery/guide_to_notation.py copying with modification cctbx/web/asu_gallery/web_links.py -> build/lib.linux-aarch64-3.10/web/asu_gallery/web_links.py copying with modification cctbx/web/asu_gallery/jvx.py -> build/lib.linux-aarch64-3.10/web/asu_gallery/jvx.py copying with modification cctbx/web/asu_gallery/__init__.py -> build/lib.linux-aarch64-3.10/web/asu_gallery/__init__.py copying with modification cctbx/web/asu_gallery/jv_asu.py -> build/lib.linux-aarch64-3.10/web/asu_gallery/jv_asu.py copying with modification cctbx/web/asu_gallery/jv_index.py -> build/lib.linux-aarch64-3.10/web/asu_gallery/jv_index.py creating build/lib.linux-aarch64-3.10/xray/observations copying with modification cctbx/xray/observations/__init__.py -> build/lib.linux-aarch64-3.10/xray/observations/__init__.py copying with modification cctbx/xray/observations/tst_observations.py -> build/lib.linux-aarch64-3.10/xray/observations/tst_observations.py creating build/lib.linux-aarch64-3.10/xray/targets copying with modification cctbx/xray/targets/__init__.py -> build/lib.linux-aarch64-3.10/xray/targets/__init__.py copying with modification cctbx/xray/targets/r1.py -> build/lib.linux-aarch64-3.10/xray/targets/r1.py copying with modification cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/lib.linux-aarch64-3.10/xray/targets/tst_shelxl_wght_ls.py copying with modification cctbx/xray/targets/tst_r1.py -> build/lib.linux-aarch64-3.10/xray/targets/tst_r1.py creating build/lib.linux-aarch64-3.10/xray/structure_factors copying with modification cctbx/xray/structure_factors/from_scatterers_direct.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/from_scatterers_direct.py copying with modification cctbx/xray/structure_factors/gradient_flags.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/gradient_flags.py copying with modification cctbx/xray/structure_factors/__init__.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/__init__.py copying with modification cctbx/xray/structure_factors/gradients_direct.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/gradients_direct.py copying with modification cctbx/xray/structure_factors/misc.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/misc.py copying with modification cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/from_scatterers_direct_parallel.py copying with modification cctbx/xray/structure_factors/manager.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/manager.py copying with modification cctbx/xray/structure_factors/from_scatterers.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/from_scatterers.py copying with modification cctbx/xray/structure_factors/global_counters.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/global_counters.py copying with modification cctbx/xray/structure_factors/gradients_fft.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/gradients_fft.py copying with modification cctbx/xray/structure_factors/from_scatterers_fft.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/from_scatterers_fft.py copying with modification cctbx/xray/structure_factors/gradients_base.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/gradients_base.py copying with modification cctbx/xray/structure_factors/gradients.py -> build/lib.linux-aarch64-3.10/xray/structure_factors/gradients.py creating build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu copying with modification cctbx/sgtbx/direct_space_asu/__init__.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/__init__.py copying with modification cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/short_cuts.py copying with modification cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/facet_analysis.py copying with modification cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/plane_group_reference_table.py copying with modification cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/cut_plane.py copying with modification cctbx/sgtbx/direct_space_asu/reference_table.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/reference_table.py copying with modification cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/check_redundancies.py creating build/lib.linux-aarch64-3.10/uctbx/determine_unit_cell copying with modification cctbx/uctbx/determine_unit_cell/__init__.py -> build/lib.linux-aarch64-3.10/uctbx/determine_unit_cell/__init__.py creating build/lib.linux-aarch64-3.10/source_generators/eltbx copying cctbx/source_generators/eltbx/__init__.py -> build/lib.linux-aarch64-3.10/source_generators/eltbx copying with modification cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/lib.linux-aarch64-3.10/source_generators/eltbx/generate_sasaki_cpp.py copying with modification cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/lib.linux-aarch64-3.10/source_generators/eltbx/generate_henke_cpp.py creating build/lib.linux-aarch64-3.10/examples/merging/samosa copying cctbx/examples/merging/samosa/__init__.py -> build/lib.linux-aarch64-3.10/examples/merging/samosa copying with modification cctbx/examples/merging/samosa/scale.py -> build/lib.linux-aarch64-3.10/examples/merging/samosa/scale.py copying with modification cctbx/examples/merging/samosa/join.py -> build/lib.linux-aarch64-3.10/examples/merging/samosa/join.py copying with modification cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/lib.linux-aarch64-3.10/examples/merging/samosa/per_lattice_postrefinement.py creating build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/proto copying with modification cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/proto/__init__.py copying with modification cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/proto/tst_asu.py copying with modification cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/lib.linux-aarch64-3.10/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py file cctbx/stdlib.py (for module stdlib) not found running build_ext /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( Python: 3.10.2 "/usr/bin/python3" Compiler: default Build mode: release Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Use conda: False Use opt_resources if available: False Use environment flags: False Enable C++11: False command_version_suffix: None Relocatable paths anchored at: /<>/cctbx-2021.12+ds1/build/temp.linux-aarch64-3.10/cctbx-build Top-down list of all modules involved: Creating files in build directory: "/<>/cctbx-2021.12+ds1/build/temp.linux-aarch64-3.10/cctbx-build" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile Regenerating module files in /<>/cctbx-2021.12+ds1/build/temp.linux-aarch64-3.10/base Base directory '/<>/cctbx-2021.12+ds1/build/temp.linux-aarch64-3.10/base' does not exist. Assuming base-less installation, skipping module file regeneration /usr/bin/python3 /usr/bin/scons No entry for terminal type "unknown"; using dumb terminal settings. scons: Reading SConscript files ... scons: done reading SConscript files. scons: Building targets ... scons: `.' is up to date. scons: done building targets. cd /<>/cctbx-2021.12+ds1/build && python3 ../libtbx/configure.py --build=debug --use_environment_flags cctbx cbflib scitbx crys3d libtbx iotbx wxtbx smtbx Python: 3.10.2 "/usr/bin/python3" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security CFLAGS = -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro command_version_suffix: None Relocatable paths anchored at: /<>/cctbx-2021.12+ds1/build Top-down list of all modules involved: wxtbx "/<>/cctbx-2021.12+ds1/wxtbx" iotbx "/<>/cctbx-2021.12+ds1/iotbx" smtbx "/<>/cctbx-2021.12+ds1/smtbx" ucif "/<>/cctbx-2021.12+ds1/ucif" crys3d "/<>/cctbx-2021.12+ds1/crys3d" cctbx "/<>/cctbx-2021.12+ds1/cctbx" scitbx "/<>/cctbx-2021.12+ds1/scitbx" fable "/<>/cctbx-2021.12+ds1/fable" omptbx "/<>/cctbx-2021.12+ds1/omptbx" boost+adaptbx "/<>/cctbx-2021.12+ds1/boost" "/<>/cctbx-2021.12+ds1/boost_adaptbx" tbxx "/<>/cctbx-2021.12+ds1/tbxx" chiltbx "/<>/cctbx-2021.12+ds1/chiltbx" libtbx "/<>/cctbx-2021.12+ds1/libtbx" Creating files in build directory: "/<>/cctbx-2021.12+ds1/build" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/<>/cctbx-2021.12+ds1/libtbx/command_line" Processing: "/<>/cctbx-2021.12+ds1/boost_adaptbx/command_line" Processing: "/<>/cctbx-2021.12+ds1/fable/command_line" Processing: "/<>/cctbx-2021.12+ds1/scitbx/command_line" Processing: "/<>/cctbx-2021.12+ds1/cctbx/command_line" Processing: "/<>/cctbx-2021.12+ds1/crys3d/command_line" Processing: "/<>/cctbx-2021.12+ds1/smtbx/command_line" Processing: "/<>/cctbx-2021.12+ds1/iotbx/command_line" Processing: "/<>/cctbx-2021.12+ds1/wxtbx/command_line" Processing: "/<>/cctbx-2021.12+ds1/libtbx/libtbx_refresh.py" Processing: "/<>/cctbx-2021.12+ds1/boost_adaptbx/libtbx_refresh.py" Processing: "/<>/cctbx-2021.12+ds1/scitbx/libtbx_refresh.py" Generating C++ header files in: "/<>/cctbx-2021.12+ds1/build/include/scitbx/array_family" Generating C++ files in: "/<>/cctbx-2021.12+ds1/build/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( Processing: "/<>/cctbx-2021.12+ds1/cctbx/libtbx_refresh.py" Generating C++ files in: "/<>/cctbx-2021.12+ds1/build/cctbx/eltbx" Generating C++ files in: "/<>/cctbx-2021.12+ds1/build/include/cctbx/boost_python" Processing: "/<>/cctbx-2021.12+ds1/crys3d/libtbx_refresh.py" Processing: "/<>/cctbx-2021.12+ds1/smtbx/libtbx_refresh.py" Generating C++ files in: "/<>/cctbx-2021.12+ds1/build/include/smtbx/boost_python" Processing: "/<>/cctbx-2021.12+ds1/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Regenerating module files in /<>/cctbx-2021.12+ds1/base Base directory '/<>/cctbx-2021.12+ds1/base' does not exist. Assuming base-less installation, skipping module file regeneration Done. cd /<>/cctbx-2021.12+ds1/build && ./bin/libtbx.scons -j "4" No entry for terminal type "unknown"; using dumb terminal settings. scons: Reading SConscript files ... libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security CFLAGS = -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro libtbx.scons: OpenMP is disabled. BOOST_VERSION: 107400 Ignored: [Errno 2] No such file or directory: '/<>/cctbx-2021.12+ds1/build/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/<>/cctbx-2021.12+ds1/build/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/<>/cctbx-2021.12+ds1/build/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/<>/cctbx-2021.12+ds1/build/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/<>/cctbx-2021.12+ds1/build/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/<>/cctbx-2021.12+ds1/build/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/metric_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/utility_ext.cpp g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/hybrid_times_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /<>/cctbx-2021.12+ds1/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/meta_ext.cpp g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/optional_ext.cpp g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/rational_ext.cpp g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/std_pair_ext.cpp g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/boost_adaptbx/tests/boost_thread_test.cpp g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/tests/python_streambuf_test_ext.cpp g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/boost_adaptbx/tests/tst_optional_copy.cpp g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread boost_adaptbx/tests/tst_optional_copy.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/boost_adaptbx/tuple_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/cctbx-2021.12+ds1/boost_adaptbx/tests/python_streambuf_test_ext.cpp:2: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adp_restraints/adp_restraints_bpl.cpp g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adp_restraints/adp_restraints_ext.cpp g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adp_restraints/adp_similarity_bpl.cpp g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adp_restraints/aniso_restraints_bpl.cpp g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adp_restraints/isotropic_adp_bpl.cpp g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adp_restraints/rigid_bond_bpl.cpp g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adp_restraints/rigu_bpl.cpp g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adptbx/boost_python/adptbx_ext.cpp g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adptbx/boost_python/anharmonic_ext.cpp g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/adptbx/boost_python/hirshfeld.cpp g++ -o cctbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/array_family/boost_python/flex_ext.cpp g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/array_family/boost_python/flex_miller_index.cpp g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/array_family/boost_python/flex_xray_scatterer.cpp g++ -o cctbx/boost_python/emma_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/boost_python/emma_ext.cpp g++ -o cctbx/boost_python/french_wilson_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/boost_python/french_wilson_ext.cpp g++ -o cctbx/boost_python/orientation_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/boost_python/orientation_ext.cpp g++ -o cctbx/boost_python/statistics_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/boost_python/statistics_ext.cpp g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/covariance/boost_python/covariance_ext.cpp g++ -o cctbx/crystal/asu_clusters_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/asu_clusters_bpl.cpp g++ -o cctbx/crystal/close_packing_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/close_packing_bpl.cpp g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/coordination_sequences_bpl.cpp g++ -o cctbx/crystal/crystal_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/crystal_ext.cpp g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/direct_space_asu_bpl.cpp g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/incremental_pairs_bpl.cpp g++ -o cctbx/crystal/neighbors_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/neighbors_bpl.cpp g++ -o cctbx/crystal/pair_tables_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/pair_tables_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/crystal/incremental_pairs_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/site_cluster_analysis_bpl.cpp g++ -o cctbx/crystal/symmetry_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/crystal/symmetry_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/crystal/site_cluster_analysis_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/dmtbx/boost_python/dmtbx_ext.cpp g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/dmtbx/boost_python/triplet_generator.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/crystal/symmetry_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp g++ -o cctbx/eltbx/attenuation_coefficient.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/attenuation_coefficient.cpp g++ -o cctbx/eltbx/basic.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/basic.cpp g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/chemical_elements_ext.cpp g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/covalent_radii_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp:11: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/fp_fdp_ext.cpp g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/henke_ext.cpp g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/icsd_radii_ext.cpp g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/neutron_ext.cpp g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/sasaki_ext.cpp g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/tiny_pse_ext.cpp g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/wavelengths_ext.cpp g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/eltbx/boost_python/xray_scattering_ext.cpp g++ -o cctbx/eltbx/covalent_radii.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/covalent_radii.cpp g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/electron_scattering/peng1996.cpp g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/fp_fdp.cpp g++ -o cctbx/eltbx/henke.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke.cpp g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke_tables_01_12.cpp g++ -o cctbx/eltbx/henke_tables_13_24.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke_tables_13_24.cpp g++ -o cctbx/eltbx/henke_tables_25_36.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke_tables_25_36.cpp g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke_tables_37_48.cpp g++ -o cctbx/eltbx/henke_tables_49_60.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke_tables_49_60.cpp g++ -o cctbx/eltbx/henke_tables_61_72.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke_tables_61_72.cpp g++ -o cctbx/eltbx/henke_tables_73_84.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke_tables_73_84.cpp g++ -o cctbx/eltbx/henke_tables_85_92.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/henke_tables_85_92.cpp g++ -o cctbx/eltbx/icsd_radii.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/icsd_radii.cpp g++ -o cctbx/eltbx/neutron.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/neutron.cpp g++ -o cctbx/eltbx/sasaki.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/sasaki.cpp g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/sasaki_tables_01_12.cpp g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/sasaki_tables_13_24.cpp g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/sasaki_tables_25_36.cpp g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/sasaki_tables_37_48.cpp g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/sasaki_tables_49_60.cpp g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/sasaki_tables_61_72.cpp g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 cctbx/eltbx/sasaki_tables_73_82.cpp g++ -o cctbx/eltbx/tiny_pse.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/tiny_pse.cpp g++ -o cctbx/eltbx/wavelengths.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/wavelengths.cpp g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/xray_scattering/it1992.cpp g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/xray_scattering/n_gaussian.cpp g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/eltbx/xray_scattering/wk1995.cpp g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Icctbx/examples -I/<>/cctbx-2021.12+ds1/cctbx/examples /<>/cctbx-2021.12+ds1/cctbx/examples/convert_ccp4_symop_lib.cpp g++ -o cctbx/examples/find_distances.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Icctbx/examples -I/<>/cctbx-2021.12+ds1/cctbx/examples /<>/cctbx-2021.12+ds1/cctbx/examples/find_distances.cpp g++ -o cctbx/examples/getting_started.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Icctbx/examples -I/<>/cctbx-2021.12+ds1/cctbx/examples /<>/cctbx-2021.12+ds1/cctbx/examples/getting_started.cpp g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Icctbx/examples -I/<>/cctbx-2021.12+ds1/cctbx/examples /<>/cctbx-2021.12+ds1/cctbx/examples/lattice_symmetry.cpp g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Icctbx/examples -I/<>/cctbx-2021.12+ds1/cctbx/examples /<>/cctbx-2021.12+ds1/cctbx/examples/sym_equiv_sites.cpp g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Icctbx/examples -I/<>/cctbx-2021.12+ds1/cctbx/examples /<>/cctbx-2021.12+ds1/cctbx/examples/sys_abs_equiv_space_groups.cpp g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry/boost_python/geometry_ext.cpp g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/angle_bpl.cpp g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/bond_bpl.cpp g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/bond_bpl.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/chirality_bpl.cpp g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/geometry_restraints_ext.cpp g++ -o cctbx/geometry_restraints/motif_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/motif_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/motif_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/geometry_restraints/planarity_bpl.cpp g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/maptbx/asymmetric_map.cpp g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/maptbx/asymmetric_map_ext.cpp g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/coordinate_transformers.cpp g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/grid_tags.cpp g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/gridding.cpp g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/maptbx_ext.cpp g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/misc.cpp g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/peak_search.cpp g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/pymol_interface.cpp g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/statistics.cpp g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/maptbx/boost_python/structure_factors.cpp g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/masks/boost_python/masks_ext.cpp g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/math/boost_python/math_ext.cpp g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/math/time_trigonometry.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/smart_ptr/shared_array.hpp:24, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx-2021.12+ds1/cctbx/math/cos_sin_table.h:6, from /<>/cctbx-2021.12+ds1/cctbx/math/time_trigonometry.cpp:1: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/miller/asu.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/miller/asu.cpp g++ -o cctbx/miller/bins.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/miller/bins.cpp g++ -o cctbx/miller/index_generator.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/miller/index_generator.cpp g++ -o cctbx/miller/index_span.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/miller/index_span.cpp g++ -o cctbx/miller/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/miller/match_bijvoet_mates.cpp g++ -o cctbx/miller/match_indices.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/miller/match_indices.cpp g++ -o cctbx/miller/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/miller/match_multi_indices.cpp g++ -o cctbx/miller/sym_equiv.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/miller/sym_equiv.cpp g++ -o cctbx/sgtbx/bricks.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/bricks.cpp g++ -o cctbx/sgtbx/change_of_basis_op.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/change_of_basis_op.cpp g++ -o cctbx/sgtbx/find_affine.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/find_affine.cpp g++ -o cctbx/sgtbx/group_codes.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/group_codes.cpp g++ -o cctbx/sgtbx/hall_in.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/hall_in.cpp g++ -o cctbx/sgtbx/lattice_tr.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/lattice_tr.cpp g++ -o cctbx/sgtbx/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/lattice_symmetry.cpp g++ -o cctbx/sgtbx/miller.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/miller.cpp g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/reciprocal_space_asu.cpp g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/reciprocal_space_ref_asu.cpp g++ -o cctbx/sgtbx/rot_mx.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/rot_mx.cpp g++ -o cctbx/sgtbx/rot_mx_info.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/rot_mx_info.cpp g++ -o cctbx/sgtbx/row_echelon_solve.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/row_echelon_solve.cpp g++ -o cctbx/sgtbx/rt_mx.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/rt_mx.cpp g++ -o cctbx/sgtbx/select_generators.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/select_generators.cpp g++ -o cctbx/sgtbx/seminvariant.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/seminvariant.cpp g++ -o cctbx/sgtbx/site_symmetry.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/site_symmetry.cpp g++ -o cctbx/sgtbx/space_group.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/space_group.cpp g++ -o cctbx/sgtbx/space_group_type.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/space_group_type.cpp g++ -o cctbx/sgtbx/symbols.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/symbols.cpp g++ -o cctbx/sgtbx/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/tensor_rank_2.cpp g++ -o cctbx/sgtbx/tr_group.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/tr_group.cpp g++ -o cctbx/sgtbx/tr_vec.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/tr_vec.cpp g++ -o cctbx/sgtbx/utils.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/utils.cpp g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/wyckoff.cpp g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/reference_settings/normalizer.cpp g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/reference_settings/wyckoff.cpp g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/uctbx/uctbx.cpp g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/uctbx/spoil_optimization.cpp g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/uctbx/crystal_orientation.cpp g++ -o cctbx/merging/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/merging/ext.cpp g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/amplitude_normalisation.cpp g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/asu.cpp g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/bins.cpp Create symlinks for: 'lib/libcctbx.so.0.0.1': 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1', 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread cctbx/math/time_trigonometry.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lm g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/change_basis.cpp g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/expand_to_p1.cpp g++ -o cctbx/miller/boost_python/f_calc_map.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/f_calc_map.cpp g++ -o cctbx/miller/boost_python/index_generator.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/index_generator.cpp g++ -o cctbx/miller/boost_python/index_span.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/index_span.cpp g++ -o cctbx/miller/boost_python/lookup_utils.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/lookup_utils.cpp g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/match_bijvoet_mates.cpp g++ -o cctbx/miller/boost_python/match_indices.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/match_indices.cpp g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/match_multi_indices.cpp g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/merge_equivalents.cpp g++ -o cctbx/miller/boost_python/miller_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/miller_ext.cpp g++ -o cctbx/miller/boost_python/phase_integrator.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/phase_integrator.cpp g++ -o cctbx/miller/boost_python/phase_transfer.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/phase_transfer.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/constants/constants.hpp:11, from /usr/include/boost/math/special_functions/gamma.hpp:24, from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /<>/cctbx-2021.12+ds1/scitbx/math/bessel.h:9, from /<>/cctbx-2021.12+ds1/cctbx/hendrickson_lattman.h:6, from /<>/cctbx-2021.12+ds1/cctbx/miller/sym_equiv.h:4, from /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/miller_ext.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp g++ -o cctbx/miller/boost_python/slices.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/slices.cpp g++ -o cctbx/miller/boost_python/sym_equiv.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/miller/boost_python/sym_equiv.cpp g++ -o cctbx/multipolar/aspherical_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/multipolar/aspherical_ext.cpp g++ -o cctbx/sgtbx/boost_python/brick.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/brick.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/multipolar/aspherical.h:12, from /<>/cctbx-2021.12+ds1/cctbx/multipolar/aspherical_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/change_of_basis.cpp g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/find_affine.cpp g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/lattice_symmetry.cpp g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/phase_info.cpp g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/rot_mx.cpp g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/rt_mx.cpp g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/search_symmetry.cpp g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/select_generators.cpp g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/seminvariant.cpp g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/sgtbx_ext.cpp g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/site_symmetry.cpp g++ -o cctbx/sgtbx/boost_python/space_group.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/space_group.cpp g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/space_group_type.cpp g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp g++ -o cctbx/sgtbx/boost_python/symbols.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/symbols.cpp g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/tensor_rank_2.cpp g++ -o cctbx/sgtbx/boost_python/tensors.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/tensors.cpp g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/tr_vec.cpp g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/boost_python/wyckoff.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/direct_space_asu/proto/cut.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/translation_search/boost_python/fast_nv1995.cpp In file included from /<>/cctbx-2021.12+ds1/cctbx/symmetry_search/translation_refinement.h:8, from /<>/cctbx-2021.12+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/math/imaginary.h: In instantiation of ‘scitbx::math::imaginary scitbx::math::operator*(scitbx::math::imaginary_unit_t, T) [with T = double]’: /<>/cctbx-2021.12+ds1/cctbx/symmetry_search/translation_refinement.h:72:23: required from ‘cctbx::symmetry_search::symmetrised_shifted_structure_factors::symmetrised_shifted_structure_factors(const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, cctbx::miller::f_calc_map&, const vector_type&, bool) [with FloatType = double; cctbx::symmetry_search::symmetrised_shifted_structure_factors::vector_type = scitbx::vec3]’ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value&>; A4 = bool; Value = cctbx::symmetry_search::symmetrised_shifted_structure_factors; PyObject = _object]’ /usr/include/boost/python/object/make_holder.hpp:94:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, boost::python::objects::make_holder<5>::apply::t0, boost::python::objects::make_holder<5>::apply::t1, boost::python::objects::make_holder<5>::apply::t2, boost::python::objects::make_holder<5>::apply::t3, boost::python::objects::make_holder<5>::apply::t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, cctbx::miller::f_calc_map&, const scitbx::vec3&, bool>; PyObject = _object; boost::python::objects::make_holder<5>::apply::t0 = const cctbx::sgtbx::space_group&; boost::python::objects::make_holder<5>::apply::t1 = const scitbx::af::const_ref >&; boost::python::objects::make_holder<5>::apply::t2 = cctbx::miller::f_calc_map&; boost::python::objects::make_holder<5>::apply::t3 = const scitbx::vec3&; boost::python::objects::make_holder<5>::apply::t4 = bool]’ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:65:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, cctbx::miller::f_calc_map&, const scitbx::vec3&, bool>; Arity = boost::mpl::size >&, cctbx::miller::f_calc_map&, const scitbx::vec3&, bool> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; boost::python::detail::keyword_range = std::pair]’ /usr/include/boost/python/init.hpp:311:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/init.hpp:150:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init >&, cctbx::miller::f_calc_map&, const scitbx::vec3&, bool, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, cctbx::miller::f_calc_map&, const scitbx::vec3&, bool, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init >&, cctbx::miller::f_calc_map&, const scitbx::vec3&, bool, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, cctbx::miller::f_calc_map&, const scitbx::vec3&, bool, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::symmetry_search::symmetrised_shifted_structure_factors; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; boost::python::class_::self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/cctbx-2021.12+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp:33:13: required from ‘static void cctbx::symmetry_search::boost_python::symmetrised_shifted_structure_factors_wrapper::wrap(const char*) [with FloatType = double]’ /<>/cctbx-2021.12+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp:75:60: required from here /<>/cctbx-2021.12+ds1/scitbx/math/imaginary.h:99:16: note: parameter passing for argument of type ‘scitbx::math::imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 99 | imaginary operator*(imaginary_unit_t, T b) { | ^~~~~~~~ g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/translation_search/boost_python/fast_terms.cpp g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/translation_search/boost_python/symmetry_flags.cpp g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/translation_search/boost_python/translation_search_ext.cpp g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/uctbx/boost_python/uctbx_ext.cpp g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_SINGLEFILE_NCDIST -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/uctbx/determine_unit_cell/ext.cpp g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/conversions.cpp g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/curvatures_simple.cpp g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/extinction.cpp g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/f_model_bpl.cpp g++ -o cctbx/xray/boost_python/fast_gradients.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/fast_gradients.cpp g++ -o cctbx/xray/boost_python/gradient_flags.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/gradient_flags.cpp g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread -shared -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lm g++ -o cctbx/xray/boost_python/gradients_direct.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/gradients_direct.cpp g++ -o cctbx/xray/boost_python/grouped_data.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/grouped_data.cpp Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1': 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1', 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/xray/boost_python/minimization.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/minimization.cpp g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/parameter_map.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/parameter_map.cpp:3: /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/sampled_model_density.cpp g++ -o cctbx/xray/boost_python/sampling_base.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/sampling_base.cpp g++ -o cctbx/xray/boost_python/scatterer.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/scatterer.cpp g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/scatterer_flags.cpp g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/sigmaa.cpp /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:49:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/vec3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/mat3.h:6, from /<>/cctbx-2021.12+ds1/scitbx/sym_mat3.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const unique_counts_t&)’: /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/vec3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/mat3.h:6, from /<>/cctbx-2021.12+ds1/scitbx/sym_mat3.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp g++ -o cctbx/xray/boost_python/targets.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/targets.cpp g++ -o cctbx/xray/boost_python/twin_components.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/twin_components.cpp g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/twin_targets.cpp g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/boost_python/xray_ext.cpp g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/xray/observations/boost_python/observations.cpp g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/cctbx/xray/observations/boost_python/observations_ext.cpp g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o chiltbx/handle_test.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/chiltbx/handle_test.cpp g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread cctbx/examples/convert_ccp4_symop_lib.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o chiltbx/handle_test -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro chiltbx/handle_test.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread cctbx/examples/find_distances.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread cctbx/examples/getting_started.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread cctbx/examples/lattice_symmetry.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread cctbx/examples/sym_equiv_sites.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread cctbx/examples/sys_abs_equiv_space_groups.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o fable/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1/fable -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/fable/ext.cpp g++ -o iotbx/detectors/bruker.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/detectors/bruker.cpp g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/detectors/bruker_ext.cpp g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/detectors/detectors_ext.cpp g++ -o iotbx/detectors/image_divider.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/detectors/image_divider.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/fable/ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/iotbx/detectors/bruker_ext.cpp:18: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/cctbx-2021.12+ds1/iotbx/detectors/scanbox.h:5, from /<>/cctbx-2021.12+ds1/iotbx/detectors/image_divider.h:2, from /<>/cctbx-2021.12+ds1/iotbx/detectors/detectors_ext.cpp:11: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/dsn6/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/dsn6/ext.cpp g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/misc/boost_python/dtrek_ext.cpp g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/misc/boost_python/scalepack_ext.cpp g++ -o iotbx/pdb/atom_selection.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/atom_selection.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/atom_selection.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/common_residue_names_bpl.cpp g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/construct_hierarchy.cpp g++ -o iotbx/pdb/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/ext.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/input.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/construct_hierarchy.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.cpp g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atom_bpl.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:242:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 242 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:248:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 248 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:257:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 257 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:261:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 261 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_ext.cpp In file included from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:13: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/vec3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/mat3.h:6, from /<>/cctbx-2021.12+ds1/scitbx/sym_mat3.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:13: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/vec3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/mat3.h:6, from /<>/cctbx-2021.12+ds1/scitbx/sym_mat3.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/vec3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/mat3.h:6, from /<>/cctbx-2021.12+ds1/scitbx/sym_mat3.h:4, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx-2021.12+ds1/cctbx/xray/scatterer.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_ext.cpp:11: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_ext.cpp:11: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_select.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_select.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_write.cpp g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/hybrid_36_bpl.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_write.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_write.cpp:1: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_write.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_write.cpp:1: /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/misc.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_atoms.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy_write.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/hybrid_36_c.c g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/hybrid_36_cpp.cpp g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/fable iotbx/pdb/hybrid_36_fem.cpp g++ -o iotbx/pdb/input.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/input.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/input.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/input.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread iotbx/pdb/hybrid_36_fem.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/input_bpl.cpp g++ -o iotbx/pdb/input_write.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/input_write.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/input.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/input_write.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/overall_counts.cpp g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/rna_dna_atom_names_bpl.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/hierarchy.h:8, from /<>/cctbx-2021.12+ds1/iotbx/pdb/overall_counts.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/utils.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/utils.cpp g++ -o iotbx/pdb/write_utils.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/pdb/write_utils.cpp g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/pdb/xray_structure_bpl.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/namespace.h:4, from /<>/cctbx-2021.12+ds1/iotbx/pdb/write_utils.h:5, from /<>/cctbx-2021.12+ds1/iotbx/pdb/write_utils.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/iotbx/shelx/shelx_ext.cpp /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /<>/cctbx-2021.12+ds1/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/wildcard_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/wildcard_ext.cpp g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/iotbx/xplor/boost_python/xplor_ext.cpp g++ -o iotbx/xplor/map_reader.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/xplor/map_reader.cpp g++ -o iotbx/xplor/map_writer.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/iotbx/xplor/map_writer.cpp g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1': 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1', 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1': 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1', 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1': 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1', 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1': 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1', 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1': 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1', 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1': 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1', 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1': 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1', 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1': 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1', 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1': 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1', 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1': 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1', 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1': 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1', 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_optional_ext.so.0.0.1': 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1', 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1': 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1', 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' g++ -o scitbx/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/boost_python/utils.cpp Create symlinks for: 'lib/boost_rational_ext.so.0.0.1': 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1', 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/boost_python/slice.cpp Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1': 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1', 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/utils.cpp g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1': 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1', 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' g++ -o omptbx/stubs.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/omptbx/stubs.cpp g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/small.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/utils.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/utils.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/libomptbx.so.0.0.1': 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1', 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1': 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1', 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=fable_ext.so.0 fable/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -shared -rdynamic -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1': 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1', 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1': 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1', 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/libasymmetric_map.so.0.0.1': 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1', 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1': 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1', 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1': 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1', 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1': 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1', 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1': 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1', 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1': 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1', 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1': 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1', 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1': 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1', 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1': 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1', 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1': 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1', 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1': 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1', 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1': 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1', 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1': 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1', 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1': 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1', 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1': 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1', 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1': 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1', 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1': 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1', 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1': 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1', 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In function ‘operator*’: lto1: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 ./scitbx/math/imaginary.h: In function ‘operator*.isra’: ./scitbx/math/imaginary.h:158:19: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1': 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1', 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1': 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1', 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1': 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1', 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1': 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1', 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1': 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1', 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1': 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1', 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1': 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1', 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1': 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1', 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1': 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1', 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1': 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1', 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1': 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1', 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1': 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1', 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1': 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1', 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1': 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1', 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1': 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1', 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1': 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1', 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1': 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1', 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1': 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1', 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1': 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1', 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1': 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1', 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1': 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1', 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1': 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1', 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1': 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1', 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1': 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1', 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1': 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1', 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1': 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1', 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1': 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1', 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1': 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1', 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1': 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1', 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1': 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1', 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' g++ -o scitbx/minpack/raw.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/scitbx/minpack/raw.cpp g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lm Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1': 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1', 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/scitbx/slatec/lib_c.c g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1': 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1', 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/affine.cpp Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1': 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1', 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/geometrical_hydrogens.cpp g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/occupancy.cpp g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/reparametrisation.cpp g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/rigid.cpp Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1': 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1', 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/same_group.cpp g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/shared.cpp g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/special_position.cpp g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/symmetry_equivalent.cpp g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp g++ -o omptbx/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/omptbx/ext.cpp g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_ext.cpp Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1': 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1', 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_grid.cpp g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread -shared -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1': 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1', 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_bool.cpp g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lomptbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1': 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1', 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_size_t.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_bool.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_int.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_int.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_float.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_float.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_double.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_double.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_std_string.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_random.cpp g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_sort.cpp g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_histogram.cpp g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_weighted_histogram.cpp g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_mean_and_variance.cpp g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_median.cpp g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_linear_interpolation.cpp g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/loops.cpp g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/show_sizes.cpp g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/shared_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /usr/include/boost/python/numpy/dtype.hpp:15, from /usr/include/boost/python/numpy.hpp:10, from /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/cubicle_neighbors_ext.cpp g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/cubicle_neighbors_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1': 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1', 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/glmtbx/boost_python/ext.cc In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/glmtbx/boost_python/ext.cc:11: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/distributions/poisson.hpp:40, from /<>/cctbx-2021.12+ds1/scitbx/glmtbx/family.h:14, from /<>/cctbx-2021.12+ds1/scitbx/glmtbx/glm.h:19, from /<>/cctbx-2021.12+ds1/scitbx/glmtbx/boost_python/ext.cc:14: /usr/include/boost/math/special_functions/gamma.hpp: In instantiation of ‘boost::math::detail::upper_incomplete_gamma_fract::result_type boost::math::detail::upper_incomplete_gamma_fract::operator()() [with T = long double; boost::math::detail::upper_incomplete_gamma_fract::result_type = std::pair]’: /usr/include/boost/math/tools/fraction.hpp:216:20: required from ‘typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double; typename boost::math::tools::detail::fraction_traits::result_type = long double; uintmax_t = long unsigned int]’ /usr/include/boost/math/tools/fraction.hpp:251:31: required from ‘typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double; typename boost::math::tools::detail::fraction_traits::result_type = long double]’ /usr/include/boost/math/special_functions/gamma.hpp:317:68: required from ‘T boost::math::detail::upper_gamma_fraction(T, T, T) [with T = long double]’ /usr/include/boost/math/special_functions/gamma.hpp:1157:44: required from ‘T boost::math::detail::gamma_incomplete_imp(T, T, bool, bool, const Policy&, T*) [with T = long double; Policy = boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /usr/include/boost/math/special_functions/gamma.hpp:2054:35: required from ‘typename boost::math::tools::promote_args::type boost::math::gamma_q(RT1, RT2, const Policy&) [with RT1 = double; RT2 = double; Policy = boost::math::policies::policy; typename boost::math::tools::promote_args::type = double]’ /usr/include/boost/math/special_functions/gamma.hpp:2062:18: required from ‘typename boost::math::tools::promote_args::type boost::math::gamma_q(RT1, RT2) [with RT1 = double; RT2 = double; typename boost::math::tools::promote_args::type = double]’ /<>/cctbx-2021.12+ds1/scitbx/glmtbx/family.h:122:34: required from here /usr/include/boost/math/special_functions/gamma.hpp:302:16: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 302 | result_type operator()() | ^~~~~~~~ g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In member function ‘operator()’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1': 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1', 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/graphics_utils/ext.cpp /usr/include/boost/math/tools/fraction.hpp: In function ‘continued_fraction_a.constprop.isra’: /usr/include/boost/math/tools/fraction.hpp:200:59: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 200 | inline typename detail::fraction_traits::result_type continued_fraction_a(Gen& g, const U& factor, boost::uintmax_t& max_terms) | ^ Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1': 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1', 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/iso_surface/iso_surface_ext.cpp Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1': 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1', 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/lbfgs/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 -I/<>/cctbx-2021.12+ds1/fable /<>/cctbx-2021.12+ds1/scitbx/lbfgs/ext.cpp g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1': 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1', 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/fable scitbx/lbfgs/lbfgs_fem.cpp Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1': 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1', 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/linalg/boost_python/linalg_ext.cpp g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/linalg/boost_python/matrix.cpp In file included from /usr/include/boost/config/header_deprecated.hpp:18, from /usr/include/boost/timer.hpp:20, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:9, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb.h:8, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/linalg/boost_python/cholesky.cpp g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1': 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1', 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/linalg/boost_python/householder.cpp g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/linalg/boost_python/svd.cpp Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1': 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1', 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/linalg/boost_python/eigensystem.cpp g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/lstbx/boost_python/lstbx_ext.cpp g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/lstbx/boost_python/normal_equations.cpp g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/math_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In file included from /usr/include/boost/math/special_functions/detail/igamma_inverse.hpp:16, from /usr/include/boost/math/special_functions/gamma.hpp:2171, from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /<>/cctbx-2021.12+ds1/scitbx/math/parabolic_cylinder_d.h:2, from /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/math_ext.cpp:3: /usr/include/boost/math/tools/roots.hpp: In instantiation of ‘std::pair<_ForwardIterator, _ForwardIterator> boost::math::tools::bisect(F, T, T, Tol, uintmax_t&) [with F = boost::math::detail::bessel_zero::cyl_bessel_j_zero_detail::function_object_jv, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy> >; T = long double; Tol = bool (*)(const long double&, const long double&); uintmax_t = long unsigned int]’: /usr/include/boost/math/special_functions/detail/bessel_jy_zero.hpp:326:42: required from ‘T boost::math::detail::bessel_zero::cyl_bessel_j_zero_detail::initial_guess(const T&, int, const Policy&) [with T = long double; Policy = boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /usr/include/boost/math/special_functions/bessel.hpp:399:109: required from ‘T boost::math::detail::cyl_bessel_j_zero_imp(T, int, const Policy&) [with T = long double; Policy = boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /usr/include/boost/math/special_functions/bessel.hpp:653:106: required from ‘typename boost::math::detail::bessel_traits::result_type boost::math::cyl_bessel_j_zero(T, int, const Policy&) [with T = double; Policy = boost::math::policies::policy; typename boost::math::detail::bessel_traits::result_type = double]’ /usr/include/boost/math/special_functions/bessel.hpp:664:52: required from ‘typename boost::math::detail::bessel_traits >::result_type boost::math::cyl_bessel_j_zero(T, int) [with T = double; typename boost::math::detail::bessel_traits >::result_type = double]’ /<>/cctbx-2021.12+ds1/scitbx/math/bessel.h:334:42: required from ‘scitbx::af::shared scitbx::math::bessel::bessel_J_zeroes(const FloatType&, const int&) [with FloatType = double]’ /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/math_ext.cpp:394:17: required from here /usr/include/boost/math/tools/roots.hpp:222:24: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 222 | inline std::pair bisect(F f, T min, T max, Tol tol, boost::uintmax_t& max_iter) BOOST_NOEXCEPT_IF(policies::is_noexcept_error_policy >::value&& BOOST_MATH_IS_FLOAT(T) && noexcept(std::declval()(std::declval()))) | ^~~~~~ g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1': 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1', 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/basic_statistics.cpp g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/gaussian.cpp g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/golay.cpp Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1': 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1', 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/minimum_covering_sphere.cpp g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/principal_axes_of_inertia.cpp g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/row_echelon.cpp g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/tensor_rank_2.cpp g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/chebyshev.cpp g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/icosahedron.cpp g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/slatec.cpp g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/line_search.cpp g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/r3_rotation.cpp g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/resample.cpp g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/quadrature.cpp g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/unimodular_generator.cpp g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/halton.cpp g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/least_squares_plane.cpp g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/continued_fraction.cpp g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/numeric_limits.cpp g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/exp_functions.cpp g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/zernike.cpp g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/zernike_moments.cpp In file included from /usr/include/boost/math/special_functions/detail/bernoulli_details.hpp:14, from /usr/include/boost/math/special_functions/bernoulli.hpp:16, from /usr/include/boost/math/special_functions/gamma.hpp:35, from /usr/include/boost/math/special_functions/beta.hpp:15, from /usr/include/boost/math/distributions/beta.hpp:28, from /usr/include/boost/math/distributions.hpp:17, from /<>/cctbx-2021.12+ds1/scitbx/math/distributions.h:5, from /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:7: /usr/include/boost/math/tools/toms748_solve.hpp: In instantiation of ‘std::pair<_ForwardIterator, _ForwardIterator> boost::math::tools::bracket_and_solve_root(F, const T&, T, bool, Tol, uintmax_t&, const Policy&) [with F = boost::math::detail::sample_size_func >; T = double; Tol = boost::math::tools::eps_tolerance; Policy = boost::math::policies::policy; uintmax_t = long unsigned int]’: /usr/include/boost/math/distributions/students_t.hpp:329:67: required from ‘static RealType boost::math::students_t_distribution::find_degrees_of_freedom(RealType, RealType, RealType, RealType, RealType) [with RealType = double; Policy = boost::math::policies::policy]’ /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:49:41: required from ‘static FloatType scitbx::math::{anonymous}::students_t_distribution_wrappers::find_degrees_of_freedom_wrapper(scitbx::math::{anonymous}::students_t_distribution_wrappers::ft, scitbx::math::{anonymous}::students_t_distribution_wrappers::ft, scitbx::math::{anonymous}::students_t_distribution_wrappers::ft, scitbx::math::{anonymous}::students_t_distribution_wrappers::ft, scitbx::math::{anonymous}::students_t_distribution_wrappers::ft) [with FloatType = double; scitbx::math::{anonymous}::students_t_distribution_wrappers::ft = double]’ /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:61:13: required from ‘static void scitbx::math::{anonymous}::students_t_distribution_wrappers::wrap() [with FloatType = double]’ /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:136:47: required from here /usr/include/boost/math/tools/toms748_solve.hpp:501:17: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 501 | std::pair bracket_and_solve_root(F f, const T& guess, T factor, bool rising, Tol tol, boost::uintmax_t& max_iter, const Policy& pol) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/math/distributions/beta.hpp:28, from /usr/include/boost/math/distributions.hpp:17, from /<>/cctbx-2021.12+ds1/scitbx/math/distributions.h:5, from /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:7: /usr/include/boost/math/special_functions/beta.hpp: In instantiation of ‘boost::math::detail::ibeta_fraction2_t::result_type boost::math::detail::ibeta_fraction2_t::operator()() [with T = long double; boost::math::detail::ibeta_fraction2_t::result_type = std::pair]’: /usr/include/boost/math/tools/fraction.hpp:121:20: required from ‘typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = long double; typename boost::math::tools::detail::fraction_traits::result_type = long double; uintmax_t = long unsigned int]’ /usr/include/boost/math/tools/fraction.hpp:155:31: required from ‘typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_b(Gen&, const U&) [with Gen = boost::math::detail::ibeta_fraction2_t; U = long double; typename boost::math::tools::detail::fraction_traits::result_type = long double]’ /usr/include/boost/math/special_functions/beta.hpp:720:54: required from ‘T boost::math::detail::ibeta_fraction2(T, T, T, T, const Policy&, bool, T*) [with T = long double; Policy = boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /usr/include/boost/math/special_functions/beta.hpp:1358:36: required from ‘T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool, T*) [with T = long double; Policy = boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /usr/include/boost/math/special_functions/beta.hpp:1395:20: required from ‘T boost::math::detail::ibeta_imp(T, T, T, const Policy&, bool, bool) [with T = long double; Policy = boost::math::policies::policy, boost::math::policies::promote_double, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy, boost::math::policies::default_policy>]’ /usr/include/boost/math/special_functions/beta.hpp:1557:93: required from ‘typename boost::math::tools::promote_args::type boost::math::ibetac(RT1, RT2, RT3, const Policy&) [with RT1 = double; RT2 = double; RT3 = double; Policy = boost::math::policies::policy; typename boost::math::tools::promote_args::type = double]’ /usr/include/boost/math/distributions/students_t.hpp:195:29: required from ‘RealType boost::math::cdf(const boost::math::students_t_distribution&, const RealType&) [with RealType = double; Policy = boost::math::policies::policy]’ /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:99:5: required from ‘static FloatType scitbx::math::{anonymous}::non_member_function_wrappers::cdf(const wt&, FloatType) [with FloatType = double; Distribution = boost::math::students_t_distribution; scitbx::math::{anonymous}::non_member_function_wrappers::wt = boost::math::students_t_distribution]’ /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:120:10: required from ‘static void scitbx::math::{anonymous}::non_member_function_wrappers::wrap() [with FloatType = double; Distribution = boost::math::students_t_distribution]’ /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:138:63: required from here /usr/include/boost/math/special_functions/beta.hpp:683:16: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 683 | result_type operator()() | ^~~~~~~~ In file included from /usr/include/boost/math/distributions/non_central_t.hpp:16, from /usr/include/boost/math/distributions.hpp:39, from /<>/cctbx-2021.12+ds1/scitbx/math/distributions.h:5, from /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:7: /usr/include/boost/math/distributions/students_t.hpp: In static member function ‘static RealType boost::math::students_t_distribution::find_degrees_of_freedom(RealType, RealType, RealType, RealType, RealType) [with RealType = double; Policy = boost::math::policies::policy]’: /usr/include/boost/math/distributions/students_t.hpp:329:34: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 329 | std::pair r = tools::bracket_and_solve_root(f, hint, RealType(2), false, tol, max_iter, Policy()); | ^ In file included from /usr/include/boost/math/special_functions/gamma.hpp:20, from /usr/include/boost/math/special_functions/beta.hpp:15, from /usr/include/boost/math/distributions/beta.hpp:28, from /usr/include/boost/math/distributions.hpp:17, from /<>/cctbx-2021.12+ds1/scitbx/math/distributions.h:5, from /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:7: /usr/include/boost/math/tools/fraction.hpp: In function ‘typename boost::math::tools::detail::fraction_traits::result_type boost::math::tools::continued_fraction_a(Gen&, const U&, uintmax_t&) [with Gen = boost::math::detail::upper_incomplete_gamma_fract; U = long double]’: /usr/include/boost/math/tools/fraction.hpp:216:15: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 216 | value_type v = g(); | ^ In file included from /usr/include/boost/math/special_functions/detail/bernoulli_details.hpp:14, from /usr/include/boost/math/special_functions/bernoulli.hpp:16, from /usr/include/boost/math/special_functions/gamma.hpp:35, from /usr/include/boost/math/special_functions/beta.hpp:15, from /usr/include/boost/math/distributions/beta.hpp:28, from /usr/include/boost/math/distributions.hpp:17, from /<>/cctbx-2021.12+ds1/scitbx/math/distributions.h:5, from /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:7: /usr/include/boost/math/tools/toms748_solve.hpp: In function ‘std::pair<_ForwardIterator, _ForwardIterator> boost::math::tools::toms748_solve(F, const T&, const T&, const T&, const T&, Tol, uintmax_t&, const Policy&) [with F = boost::math::detail::sample_size_func >; T = double; Tol = boost::math::tools::eps_tolerance; Policy = boost::math::policies::policy]’: /usr/include/boost/math/tools/toms748_solve.hpp:295:17: note: parameter passing for argument of type ‘std::pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 295 | std::pair toms748_solve(F f, const T& ax, const T& bx, const T& fax, const T& fbx, Tol tol, boost::uintmax_t& max_iter, const Policy& pol) | ^~~~~~~~~~~~~ In file included from /usr/include/c++/11/bits/stl_algobase.h:64, from /usr/include/c++/11/bits/specfun.h:45, from /usr/include/c++/11/cmath:1935, from /usr/include/c++/11/math.h:36, from /usr/include/python3.10/pyport.h:210, from /usr/include/python3.10/Python.h:50, from /usr/include/boost/python/detail/wrap_python.hpp:178, from /usr/include/boost/python/detail/prefix.hpp:13, from /<>/cctbx-2021.12+ds1/build/include/scitbx/array_family/boost_python/flex_fwd.h:12, from /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/distributions.cpp:1: /usr/include/c++/11/bits/stl_pair.h: In function ‘std::make_pair(long double&, long double&)std::pair::type>::__type, std::__strip_reference_wrapper::type>::__type>’: /usr/include/c++/11/bits/stl_pair.h:567:5: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 567 | make_pair(_T1&& __x, _T2&& __y) | ^~~~~~~~~ In function ‘boost::math::tools::toms748_solve >, double, boost::math::tools::eps_tolerance, boost::math::policies::policy >(boost::math::detail::sample_size_func >, double const&, double const&, double const&, double const&, boost::math::tools::eps_tolerance, unsigned long&, boost::math::policies::policy const&)std::pair [clone .isra.0]’: cc1plus: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/2d_zernike_moments.cpp g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/weighted_covariance.cpp g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/rotation.cpp g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/interpolation.cpp g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/tetrahedron.cpp g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/angle_derivative.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/math/boost_python/angle_derivative.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/minpack/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/minpack/ext.cpp g++ -o scitbx/r3_utils_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/r3_utils_ext.cpp g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In function ‘make_pair’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx-2021.12+ds1/scitbx/r3_utils_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1': 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1', 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/random/boost_python/random_ext.cpp /usr/include/boost/math/special_functions/detail/bessel_jy_zero.hpp: In function ‘initial_guess’: /usr/include/boost/math/special_functions/detail/bessel_jy_zero.hpp:246:11: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 246 | T initial_guess(const T& v, const int m, const Policy& pol) | ^ Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1': 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1', 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/random/boost_python/basic_distributions.cpp g++ -o scitbx/rigid_body/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/rigid_body/ext.cpp /usr/include/boost/math/distributions/students_t.hpp: In function ‘find_degrees_of_freedom’: /usr/include/boost/math/distributions/students_t.hpp:306:10: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 306 | RealType students_t_distribution::find_degrees_of_freedom( | ^ In member function ‘operator()’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 In function ‘make_pair’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1': 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1', 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/sparse/boost_python/vector.cpp In member function ‘operator()’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:307, from /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/versa.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_matrix.h:4, from /<>/cctbx-2021.12+ds1/scitbx/rigid_body/spatial_lib.h:5, from /<>/cctbx-2021.12+ds1/scitbx/rigid_body/featherstone.h:4, from /<>/cctbx-2021.12+ds1/scitbx/rigid_body/tardy.h:6, from /<>/cctbx-2021.12+ds1/scitbx/rigid_body/ext.cpp:14: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/push_back_etc.h: In member function ‘scitbx::af::shared_plain >::resize(unsigned long const&)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const struct tiny &’ to ‘scitbx::af::shared_plain >::resize(unsigned long const&, scitbx::af::tiny const&) [clone .isra.0]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1': 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1', 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/sparse/boost_python/matrix.cpp g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/sparse/boost_python/approx_equal.cpp Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1': 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1', 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/sparse/boost_python/random.cpp g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/sparse/boost_python/lu_factorization.cpp In function ‘bisect’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/sparse/boost_python/sparse_ext.cpp In function ‘bisect’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -o scitbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/stl/map_ext.cpp In function ‘bracket_and_solve_root’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 /usr/include/boost/math/tools/fraction.hpp: In function ‘continued_fraction_b.constprop.isra’: /usr/include/boost/math/tools/fraction.hpp:105:59: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 105 | inline typename detail::fraction_traits::result_type continued_fraction_b(Gen& g, const U& factor, boost::uintmax_t& max_terms) | ^ g++ -o scitbx/stl/set_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/stl/set_ext.cpp In function ‘toms748_solve’: lto1: note: parameter passing for argument of type ‘struct pair’ when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /<>/cctbx-2021.12+ds1/scitbx/stl/set_ext.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const string&)’: /<>/cctbx-2021.12+ds1/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/cctbx-2021.12+ds1/scitbx/stl/set_wrapper.h:4, from /<>/cctbx-2021.12+ds1/scitbx/stl/set_ext.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1': 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1', 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' g++ -o scitbx/stl/vector_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/stl/vector_ext.cpp g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1': 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1', 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1': 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1', 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1': 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1', 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/suffixtree/boost_python/object_extensions.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/cctbx-2021.12+ds1/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp:2: /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o scitbx/wigner/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/wigner/ext.cpp Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1': 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1', 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/ab_initio/ab_initio_ext.cpp Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1': 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1', 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/array_family/af_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/array_family/af_ext.cpp g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1': 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1', 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/affine.cpp g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1': 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1', 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/constraints_ext.cpp Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1': 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1', 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/direction.cpp g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1': 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1', 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/occupancy.cpp g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/reparametrisation.cpp g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/rigid.cpp g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/same_group.cpp g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/shared.cpp g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/special_position.cpp g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/boost_python/least_squares_ext.cpp g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/boost_python/weighting_schemes.cpp g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/boost_python/least_squares.cpp g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/restraints/boost_python/origin_fixing.cpp g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/refinement/restraints/boost_python/restraints_ext.cpp In file included from /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:5, from /<>/cctbx-2021.12+ds1/smtbx/refinement/least_squares.h:15, from /<>/cctbx-2021.12+ds1/smtbx/refinement/boost_python/least_squares.cpp:6: /<>/cctbx-2021.12+ds1/scitbx/math/imaginary.h: In instantiation of ‘scitbx::math::imaginary scitbx::math::operator*(scitbx::math::imaginary_unit_t, T) [with T = double]’: /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:226:47: required from ‘void smtbx::structure_factors::direct::one_scatterer_one_h::in_generic_space_group::compute_anisotropic_part(const scatterer_type&, bool) [with FloatType = double; ExpI2PiFunctor = cctbx::math::cos_sin_exact; smtbx::structure_factors::direct::one_scatterer_one_h::in_generic_space_group::scatterer_type = cctbx::xray::scatterer<>]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:105:38: required from ‘void smtbx::structure_factors::direct::one_scatterer_one_h::base::compute(const scatterer_type&, smtbx::structure_factors::direct::one_scatterer_one_h::base::complex_type, bool) [with FloatType = double; ExpI2PiFunctor = cctbx::math::cos_sin_exact; Heir = smtbx::structure_factors::direct::one_scatterer_one_h::in_generic_space_group >; smtbx::structure_factors::direct::one_scatterer_one_h::base::scatterer_type = cctbx::xray::scatterer<>; smtbx::structure_factors::direct::one_scatterer_one_h::base::complex_type = std::complex]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:1143:22: required from ‘void smtbx::structure_factors::direct::one_h::base::compute(const cctbx::miller::index<>&, const scatterer_contribution_type&, LinearisationForMillerIndex&, const boost::optional >&, bool) [with LinearisationForMillerIndex = smtbx::structure_factors::direct::one_scatterer_one_h::in_generic_space_group >; FloatType = double; ObservableType = smtbx::structure_factors::direct::one_h::modulus_squared; ExpI2PiFunctor = cctbx::math::cos_sin_exact; Heir = smtbx::structure_factors::direct::one_h::std_trigonometry; smtbx::structure_factors::direct::one_h::base::scatterer_contribution_type = smtbx::structure_factors::direct::one_scatterer_one_h::scatterer_contribution]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:1115:18: required from ‘void smtbx::structure_factors::direct::one_h::base::compute(const cctbx::miller::index<>&, const boost::optional >&, bool) [with FloatType = double; ObservableType = smtbx::structure_factors::direct::one_h::modulus_squared; ExpI2PiFunctor = cctbx::math::cos_sin_exact; Heir = smtbx::structure_factors::direct::one_h::std_trigonometry]’ /<>/cctbx-2021.12+ds1/smtbx/refinement/least_squares.h:219:38: required from ‘void smtbx::refinement::least_squares::build_design_matrix_and_normal_equations::accumulate_reflection_chunk::operator()() [with NormalEquations = scitbx::lstbx::normal_equations::non_linear_ls_with_separable_scale_factor; WeightingScheme = smtbx::refinement::least_squares::mainstream_shelx_weighting; OneMillerIndexFcalc = smtbx::structure_factors::direct::one_h::std_trigonometry; FloatType = double; bool build_design_matrix = false]’ /<>/cctbx-2021.12+ds1/smtbx/refinement/least_squares.h:125:12: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init&, const cctbx::xray::observations&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const smtbx::refinement::least_squares::mainstream_shelx_weighting&, boost::optional, smtbx::structure_factors::direct::one_h::std_trigonometry&, const scitbx::sparse::matrix&, const cctbx::xray::extinction_correction&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init&, const cctbx::xray::observations&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const smtbx::refinement::least_squares::mainstream_shelx_weighting&, boost::optional, smtbx::structure_factors::direct::one_h::std_trigonometry&, const scitbx::sparse::matrix&, const cctbx::xray::extinction_correction&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = smtbx::refinement::least_squares::build_normal_equations; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; boost::python::class_::self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ /<>/cctbx-2021.12+ds1/smtbx/refinement/boost_python/least_squares.cpp:21:16: required from ‘static void smtbx::refinement::least_squares::boost_python::wrapper::def_init_(boost::python::class_&) [with ObjectType = smtbx::refinement::least_squares::build_normal_equations; NormalEquations = scitbx::lstbx::normal_equations::non_linear_ls_with_separable_scale_factor; WeightingSchemeType = smtbx::refinement::least_squares::mainstream_shelx_weighting; FloatType = double; OneMillerIndexLinearisation = smtbx::structure_factors::direct::one_h::std_trigonometry]’ /<>/cctbx-2021.12+ds1/smtbx/refinement/boost_python/least_squares.cpp:49:79: required from ‘static void smtbx::refinement::least_squares::boost_python::wrapper::wrap_init(const char*, boost::python::class_&) [with ObjectType = smtbx::refinement::least_squares::build_normal_equations; FloatType = double; OneMillerIndexLinearisation = smtbx::structure_factors::direct::one_h::std_trigonometry]’ /<>/cctbx-2021.12+ds1/smtbx/refinement/boost_python/least_squares.cpp:69:22: required from ‘static void smtbx::refinement::least_squares::boost_python::wrapper::normal_equation_building::wrap(const char*) [with FloatType = double; OneMillerIndexLinearisation = smtbx::structure_factors::direct::one_h::std_trigonometry]’ /<>/cctbx-2021.12+ds1/smtbx/refinement/boost_python/least_squares.cpp:108:42: required from here /<>/cctbx-2021.12+ds1/scitbx/math/imaginary.h:99:16: note: parameter passing for argument of type ‘scitbx::math::imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 99 | imaginary operator*(imaginary_unit_t, T b) { | ^~~~~~~~ g++ -o smtbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/stl/map_ext.cpp g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1': 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1', 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/boost_python/ext.cpp g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1': 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1', 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/std_pair_ext.so.0.0.1': 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1', 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/usr/include/python3.10 /<>/cctbx-2021.12+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp g++ -o lib/smtbx_refinement_least_squares_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_refinement_least_squares_ext.so.0 smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In file included from /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:5, from /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp:3: /<>/cctbx-2021.12+ds1/scitbx/math/imaginary.h: In instantiation of ‘scitbx::math::imaginary scitbx::math::operator*(scitbx::math::imaginary_unit_t, T) [with T = double]’: /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:226:47: required from ‘void smtbx::structure_factors::direct::one_scatterer_one_h::in_generic_space_group::compute_anisotropic_part(const scatterer_type&, bool) [with FloatType = double; ExpI2PiFunctor = cctbx::math::cos_sin_table; smtbx::structure_factors::direct::one_scatterer_one_h::in_generic_space_group::scatterer_type = cctbx::xray::scatterer<>]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:105:38: required from ‘void smtbx::structure_factors::direct::one_scatterer_one_h::base::compute(const scatterer_type&, smtbx::structure_factors::direct::one_scatterer_one_h::base::complex_type, bool) [with FloatType = double; ExpI2PiFunctor = cctbx::math::cos_sin_table; Heir = smtbx::structure_factors::direct::one_scatterer_one_h::in_generic_space_group >; smtbx::structure_factors::direct::one_scatterer_one_h::base::scatterer_type = cctbx::xray::scatterer<>; smtbx::structure_factors::direct::one_scatterer_one_h::base::complex_type = std::complex]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:1143:22: required from ‘void smtbx::structure_factors::direct::one_h::base::compute(const cctbx::miller::index<>&, const scatterer_contribution_type&, LinearisationForMillerIndex&, const boost::optional >&, bool) [with LinearisationForMillerIndex = smtbx::structure_factors::direct::one_scatterer_one_h::in_generic_space_group >; FloatType = double; ObservableType = smtbx::structure_factors::direct::one_h::modulus_squared; ExpI2PiFunctor = cctbx::math::cos_sin_table; Heir = smtbx::structure_factors::direct::one_h::custom_trigonometry; smtbx::structure_factors::direct::one_h::base::scatterer_contribution_type = smtbx::structure_factors::direct::one_scatterer_one_h::scatterer_contribution]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:1115:18: required from ‘void smtbx::structure_factors::direct::one_h::base::compute(const cctbx::miller::index<>&, const boost::optional >&, bool) [with FloatType = double; ObservableType = smtbx::structure_factors::direct::one_h::modulus_squared; ExpI2PiFunctor = cctbx::math::cos_sin_table; Heir = smtbx::structure_factors::direct::one_h::custom_trigonometry]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/standard_xray.h:1079:16: required from ‘void smtbx::structure_factors::direct::one_h::base::evaluate(const cctbx::miller::index<>&, const boost::optional >&) [with FloatType = double; ObservableType = smtbx::structure_factors::direct::one_h::modulus_squared; ExpI2PiFunctor = cctbx::math::cos_sin_table; Heir = smtbx::structure_factors::direct::one_h::custom_trigonometry]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp:21:22: required from ‘static void smtbx::structure_factors::direct::boost_python::fc_for_one_h_class::evaluate(wt&, const cctbx::miller::index<>&) [with wt = smtbx::structure_factors::direct::one_h::custom_trigonometry]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp:53:15: required from ‘smtbx::structure_factors::direct::boost_python::fc_for_one_h_class::fc_for_one_h_class(const string&) [with wt = smtbx::structure_factors::direct::one_h::custom_trigonometry; std::string = std::__cxx11::basic_string]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp:96:9: required from ‘static void smtbx::structure_factors::direct::boost_python::fc_for_one_h_wrapper::wrap_custom_trigo(const char*) [with FloatType = double; ObservableType = smtbx::structure_factors::direct::one_h::modulus_squared; ExpI2PiFunctor = cctbx::math::cos_sin_table]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp:145:26: required from ‘static void smtbx::structure_factors::direct::boost_python::fc_for_one_h_wrapper::wrap() [with FloatType = double; ObservableType = smtbx::structure_factors::direct::one_h::modulus_squared; ExpI2PiFunctor = cctbx::math::cos_sin_table]’ /<>/cctbx-2021.12+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp:224:57: required from here /<>/cctbx-2021.12+ds1/scitbx/math/imaginary.h:99:16: note: parameter passing for argument of type ‘scitbx::math::imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 99 | imaginary operator*(imaginary_unit_t, T b) { | ^~~~~~~~ g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm ./smtbx/structure_factors/direct/standard_xray.h: In member function ‘compute_anisotropic_part’: ./smtbx/structure_factors/direct/standard_xray.h:186:12: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1': 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1', 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_accessors.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/small.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/flex_types.h:6, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_accessors.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘operator*’: lto1: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1': 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1', 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_1.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/build/include/scitbx/array_family/tiny_plain_apply.h:15, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_1.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_1.cpp:15: /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ ./scitbx/math/imaginary.h: In function ‘operator*.isra’: ./scitbx/math/imaginary.h:158:19: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_accessors.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system Create symlinks for: 'lib/smtbx_refinement_least_squares_ext.so.0.0.1': 'lib/smtbx_refinement_least_squares_ext.so.0'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1', 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_2.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/small.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_2.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_3.cpp g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_af_2.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/simple_io.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_3.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_af_1.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_4.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/simple_io.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_4.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_af_3.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_5.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/simple_io.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_af_5.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_mat3.cpp /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/vec3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/mat3.h:6, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_mat3.cpp:2: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./smtbx/structure_factors/direct/standard_xray.h: In member function ‘compute_anisotropic_part’: ./smtbx/structure_factors/direct/standard_xray.h:186:12: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_af_5.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_optional_copy.cpp g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_mat3.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm ./smtbx/structure_factors/direct/standard_xray.h: In member function ‘compute_anisotropic_part_full’: ./smtbx/structure_factors/direct/standard_xray.h:274:12: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:31, from /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:5, from /<>/cctbx-2021.12+ds1/scitbx/array_family/versa.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_optional_copy.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/accessors/rectangular_full_packed.h:3, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_optional_copy -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_optional_copy.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_rectangular_full_packed -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_rectangular_full_packed.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system In function ‘operator*’: lto1: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_ref_matrix_facet.cpp g++ -o scitbx/array_family/tst_sym_mat3.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_sym_mat3.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_ref_matrix_facet.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/vec3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/mat3.h:6, from /<>/cctbx-2021.12+ds1/scitbx/sym_mat3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_sym_mat3.cpp:2: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./scitbx/math/imaginary.h: In function ‘operator*.isra’: ./scitbx/math/imaginary.h:158:19: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1': 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1', 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_unsigned_float_arithmetic.cpp g++ -o scitbx/array_family/tst_ref_matrix_facet -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_ref_matrix_facet.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_vec3.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -Iscitbx/array_family -I/<>/cctbx-2021.12+ds1/scitbx/array_family /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_vec3.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/build/include/scitbx/array_family/tiny_algebra.h:14, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_unsigned_float_arithmetic.cpp:3: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_sym_mat3.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o scitbx/error/tst_error.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Iscitbx/error -I/<>/cctbx-2021.12+ds1/scitbx/error /<>/cctbx-2021.12+ds1/scitbx/error/tst_error.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/vec3.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tst_vec3.cpp:2: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/scitbx/fftpack/timing/fftpack_timer.cpp g++ -o scitbx/error/tst_error -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/error/tst_error.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/scitbx/fftpack/timing/test0.cpp g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_vec3.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_types.h:4, from /<>/cctbx-2021.12+ds1/scitbx/fftpack/factorization.h:4, from /<>/cctbx-2021.12+ds1/scitbx/fftpack/complex_to_complex.h:4, from /<>/cctbx-2021.12+ds1/scitbx/fftpack/timing/fftpack_timer.cpp:6: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/fable scitbx/lbfgs/sdrive_fem.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny.h:4, from /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_types.h:4, from /<>/cctbx-2021.12+ds1/scitbx/fftpack/factorization.h:4, from /<>/cctbx-2021.12+ds1/scitbx/fftpack/complex_to_complex.h:4, from /<>/cctbx-2021.12+ds1/scitbx/fftpack/complex_to_complex_3d.h:4, from /<>/cctbx-2021.12+ds1/scitbx/fftpack/timing/test0.cpp:3: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/array_family/tst_af_4.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/fftpack/timing/fftpack_timer.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lomptbx -lm g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/fftpack/timing/test0.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system -lomptbx -lm g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/scitbx/lbfgs/tst_lbfgs.cpp g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver1.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:6, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/config/header_deprecated.hpp:18, from /usr/include/boost/timer.hpp:20, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:9, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:6, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver2.cpp g++ -o scitbx/lbfgsb/dev/driver3.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver3.cpp g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/lbfgs/tst_lbfgs.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/math/tests/tst.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Iscitbx/math/tests -I/<>/cctbx-2021.12+ds1/scitbx/math/tests /<>/cctbx-2021.12+ds1/scitbx/math/tests/tst.cpp In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:6, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver2.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:6, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/config/header_deprecated.hpp:18, from /usr/include/boost/timer.hpp:20, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:9, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver2.cpp:1: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:6, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver2.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/config/header_deprecated.hpp:18, from /usr/include/boost/timer.hpp:20, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:9, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/scitbx/array_family/ref.h:8, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/raw.h:6, from /<>/cctbx-2021.12+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/cctbx-2021.12+ds1/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/cctbx-2021.12+ds1/scitbx/math/tests/tst.cpp:2: /<>/cctbx-2021.12+ds1/scitbx/math/imaginary.h: In instantiation of ‘scitbx::math::imaginary scitbx::math::operator*(T, scitbx::math::imaginary_unit_t) [with T = double]’: /<>/cctbx-2021.12+ds1/scitbx/math/tests/tst.cpp:48:5: required from here /<>/cctbx-2021.12+ds1/scitbx/math/imaginary.h:104:16: note: parameter passing for argument of type ‘scitbx::math::imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 104 | imaginary operator*(T b, imaginary_unit_t) { | ^~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/lbfgsb/dev/driver1.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/math/tests/tst -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/math/tests/tst.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system In member function ‘operator*=’: lto1: note: parameter passing for argument of type ‘struct imaginary’ when C++17 is enabled changed to match C++14 in GCC 10.1 g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Iscitbx/matrix/tests -I/<>/cctbx-2021.12+ds1/scitbx/matrix/tests /<>/cctbx-2021.12+ds1/scitbx/matrix/tests/tst_cholesky.cpp g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/lbfgsb/dev/driver2.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/lbfgsb/dev/driver3.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Iscitbx/matrix/tests -I/<>/cctbx-2021.12+ds1/scitbx/matrix/tests /<>/cctbx-2021.12+ds1/scitbx/matrix/tests/tst_givens.cpp g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Iscitbx/matrix/tests -I/<>/cctbx-2021.12+ds1/scitbx/matrix/tests /<>/cctbx-2021.12+ds1/scitbx/matrix/tests/tst_householder.cpp g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Iscitbx/matrix/tests -I/<>/cctbx-2021.12+ds1/scitbx/matrix/tests /<>/cctbx-2021.12+ds1/scitbx/matrix/tests/tst_svd.cpp g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/matrix/tests/tst_givens.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Iscitbx/serialization -I/<>/cctbx-2021.12+ds1/scitbx/serialization /<>/cctbx-2021.12+ds1/scitbx/serialization/tst_base_256.cpp g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/matrix/tests/tst_cholesky.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/serialization/tst_base_256.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lm g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Iscitbx/sparse/tests -I/<>/cctbx-2021.12+ds1/scitbx/sparse/tests /<>/cctbx-2021.12+ds1/scitbx/sparse/tests/tst_sparse.cpp g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/matrix/tests/tst_svd.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/matrix/tests/tst_householder.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>/cctbx-2021.12+ds1=. -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/cctbx-2021.12+ds1 -I/<>/cctbx-2021.12+ds1/build/include -I/<>/cctbx-2021.12+ds1 -Ismtbx/refinement/constraints -I/<>/cctbx-2021.12+ds1/smtbx/refinement/constraints /<>/cctbx-2021.12+ds1/smtbx/refinement/constraints/tests/tst_special_position.cpp g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread scitbx/sparse/tests/tst_sparse.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -pthread smtbx/refinement/constraints/tests/tst_special_position.o -Llib -L/<>/cctbx-2021.12+ds1/lib -Llib -L/<>/cctbx-2021.12+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system scons: done building targets. usr+sys time: 22.75 seconds wall clock time: 33 minutes 15.67 seconds (1995.67 seconds total) iconv -f ISO-8859-1 -t UTF-8 cctbx/eltbx/covalent_radii.h > covalent_radii.h mv covalent_radii.h cctbx/eltbx/covalent_radii.h make[1]: Leaving directory '/<>/cctbx-2021.12+ds1' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/cctbx-2021.12+ds1' python3 setup.py test /<>/cctbx-2021.12+ds1/setup.py:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension No entry for terminal type "unknown"; using dumb terminal settings. running test make[1]: Leaving directory '/<>/cctbx-2021.12+ds1' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild W: pybuild base:266: missing command (plugin=custom, method=install, interpreter=python3.9, version=3.9) W: pybuild base:266: missing command (plugin=custom, method=install, interpreter=python3.10, version=3.10) dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 8c8ae8c646ead2d958728ee6bf7b3a48575f03a6 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 f820a3cf7aef7559614415db3a4c3a50f646fc5a debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 f8414370586c3aa5f4ae19ffce2806808f05512b debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 732cb3c97b276630581759c9bbb4f927688641d6 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 2a2885a693343b4f85af7bccb3e724f25ee27f1f debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 26ed31a3a67ed6bd9acc5cd002bc1edd9a2544f9 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 3e598ec4d4c3918c8e5bfb74518b2290fdb5fb5e debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8f1071f83dd24207f0cf147a9f0cbf264d628f2c debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 e4c135094a743a54f7c6370bc5fffc63ab6bfce6 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 2d0e748de5e49606c8c059bf9376d8e8fbe80b46 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_scalepack_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 5a98454939aa3ed2cea6a72c9533ec25efd2845f debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 95b7c5a7cdae1dcf65d231954afc1b84649bcc44 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 2455034cac75f54fa7adc8bad25120c9084a2a28 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_dtrek_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 486042f6b837622b2c35570ef9f0126b18743154 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_multipolar_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 108e930531897ac37004994453300cbde3affa3b debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 c8bd204d2d502cc25adff4a8c39cdb27d5af3341 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 ee95994785e592dd427a7db675eeb0e44023c9aa debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 0e467055421368b0651eb47f5af7d29e91d70eaf debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 ecca28b3ad70427e7d711665d302e7360943af70 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 0b78f1bbe9a59b86ac8153fc435d24303814dca3 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_xplor.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 8b732fee346060e84a9449209ac0ade6f9f918d8 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 8de4bb574742b88ebac0149feec93f74f078b9aa debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 15ea7821935f31c53e9743121f305f72f175a1a0 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 a683d9c661e2a8dea4c545e9043b185a2442bb31 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 f3c769d6b061a3fc4102cce5a383301a3dbd108d debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 09122b1d38acf4a88d32186f7a3f574c54929efa debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_statistics_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 f4689fb6f3c6e1d108521f47830a4ef95116d7bb debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 757f9651004c808dbcd078e7b500583501ed2e2a debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_translation_search_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 d955d358de057f7ea13dd601ac1924a7d85ac68a debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 240b8cee80888e522891da69c2ef1f5d2f5b9898 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 f54f609d74a6a91d919d44dd73d8fb54075c4b0b debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8006bef5d23056b485ab23b480381f4f0b7d2dba debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 bd7a7152e64e02615cdc8701d4686ed97551bb8c debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 9353820a24a05ee36bfac09f7f21f9377aa3d232 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 524c99c19f022583553f23c1097261a84dacc023 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_ab_initio_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 49d80af3ccb29791da4a4904b1e300e5138a6ad0 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 271af664ca935b54b5d3be684dd0dee3ba1287db debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 4e6fc9b64ac29b2b97e7bad8d5366899e505211f debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 c41ab22c3acde10b50e665191ca9aae49d57ff78 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 42f0721c7cb88bccc947cf2279d2e869182956a8 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 492b50e44835b408c9a161dfb2efe432f740b744 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 5af0383177b5808e53b8e9eaf8a4865872661194 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 2364190b297890880f1c009aeb0a23a2ae90f8bc debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 1b5028325c6c7635ad1d02bc46e0956b349761b3 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 04997192fdf7181ebce5f6e12a3526b0060ac880 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 cec8a9175f4113889d4386f93a3c656b661bde12 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 60bc5f2bb33d87cf0c324871afe1aaf3ffcaca3a debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 6010e4742eec1b662b3666e88d8e1a08eba2a5f0 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 464dff6275f0746db8bb6b296656cca4d7659fdb debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_xplor_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 05a4a0470e060b8bca8bbb0c9d2c1d89b855fccc debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_merging_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 327a59a6040d747786f84b282973c2823c77e105 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 287f83bb6270f77c17b705d97f268dd869be942f debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 11f4b3a859570ad7b14adad59d21685a38e8bd0c debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 bd4748a1f3a6fc9b5166ea20d50d35d830c0e215 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 7afdc66a3c2faada2076a4eca12890a8c7a3eddf debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 e7ac8d95fcd2dd88e34316e5bde6f45029b31b01 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 9db10b3d5cf188f0d7d19f068c7ded772cce8a6f debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 38f66df86f1546f8c9efbff2cd40e0ad2d864714 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 fb178c617ffcbbe9db82a9912a7d41d2c5ca44d1 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libasymmetric_map.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 42b98a8164997d8af782082955c24806a86af009 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_wigner_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 a38d268550d014024eb252dfa72c1f8208931612 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 43be81f9952933aec7d97e60d79f838c7fb2b503 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_orientation_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 9f344d1f5b6eac07f6776c820d4d5fafe4366ff5 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 79d059cd48395e5fc2e0cb713dab94ef6d8b67b3 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_dsn6_map_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 439f88b04ad79650287ce0db7378a27d928d06d6 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_math_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 de4e2752b7a96133e37780c6d753d395f53bd6e6 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_minpack.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 e8947f50c26cbe5a297e9f034a90b4272a34d8d3 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 55092fca96d92aae018a299b6ddc39fae7f41232 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 f75592a9efac4fca633378ab04f01f6808b6050c debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_array_family_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 e69040511ce546efd5121490f146b799f5ce39e9 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/determine_unit_cell_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 50422b6ac60d6e27b8256036553600309fa9af00 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_slatec.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 ff23385de76008ca45021e5fc222628021d0adba debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 79004e250f7747bdbdb76f1a33ea18a92de7896f debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 f2e0c6d4b14b212f7a19d916ff2928b112096c1f debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 e0217b67080d9a15bea86457e91e60679d1e9e83 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 4d38c3c3d4f55cae2dfead2774b69558dbd8cb11 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 52217d0d61e9400ac1a6a8f746f93f6d9479f801 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 9c69120f1322a195cdc21e73fa1afce49f12c551 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/std_pair_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 27ecdacdd1839b164b973cad393d9918cb571e1e debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 2ccf4e11028f9ff802d80716d7c5f7409154c9be debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 c095d7209d591e4e3b835a68d45b9c4c83402536 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 554c7111e8f029111b12fadaf4ac0af98c499d05 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 275def8c0163bed38ec8db63d0b542566c157661 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 378826d723d9757d8e0bac91a7971d6b3dfee43a debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_tuple_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 10131c4986dc6322d61ce6a42cf06793364b8826 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_covariance_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 ade40812ce66fe59b5407a934a18e764fe6ebde3 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 b33ac0db5955ac6fb1e86e1daca4638f3b126e80 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 fd94aeff626f3723d5463e9967ed8dde701712f0 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 3d35c798ecbf3259028faccb322d50d6718879d7 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 5075d30f03af80f44bbc4f3c5463db0bcee99206 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_asymmetric_map_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8c5123dfd2a5b957188bdedece549a45e6c34936 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 bdc3df64be05813b861487201deb50524c21ce26 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8e1fe49e5b6bf702b2d7d144e371b0ace29299ba debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 ffc1bb935d7b246233025696752dd3ecec4b96ad debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libomptbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 24c30bf0eee1c64e0f042e6dd30cc34c0b079bf2 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/omptbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 ade64aae1996ee5ae7bd9700f1be329605cf4449 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8c5cdf6f0629f35afe75d6d29200255c6f9e9b8b debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libcctbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 caa5ed383905edda0dc31505dd3e32ceb66532b7 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 7d314695f24c35fe33d74776ca61a02ef45fb842 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_wildcard_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 3732be2aecb812f19fd29c91d9d97e725863f1c9 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_shelx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 a266586d49dff1963c1910f7c881165c7d346efd debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 f8aaad319fd3ee5601f7bb61ddd1b7c24bb3ee40 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 efb392a261810c7caa8464171ff3fda2851a295a debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 72a2fba698fe62af8981deec18c1ccc851810aee debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 5a88ffd7753e759cbe58b49748484e751c4ff77a debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/libiotbx_pdb.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 665d184ba7bd8a3da0fd34ad3c4bf3010a01c116 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 9b348d6ca916cb8311a9f01884bbcf4fc7969748 debugedit: debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 73d68afe08442702f309a1a0bd6c7575de7e3349 dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_dtrek_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_dtrek_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBytes_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_orientation_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_orientation_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_orientation_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_orientation_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_ValueError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PySlice_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_KeyError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_asymmetric_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_asymmetric_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Clear used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBytes_AsString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _PyBytes_Resize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_TypeError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Clear used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Next used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromWideChar used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_shelx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_shelx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_wigner_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_wigner_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_wigner_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_wigner_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_ab_initio_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_ab_initio_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_AttributeError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyCapsule_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PySlice_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_TypeError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 41 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_merging_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_merging_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PySlice_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_KeyError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBytes_AsStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_CheckSignals used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_AsUnicode used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyImport_ImportModule used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_TypeError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromEncodedObject used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _PyBytes_Resize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_ZeroDivisionError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_multipolar_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_multipolar_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_array_family_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_array_family_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_array_family_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Next used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Clear used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_KeyError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_AsLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_scalepack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_scalepack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_geometry_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Next used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_covariance_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_covariance_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_covariance_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_covariance_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PySlice_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_statistics_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_statistics_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_dsn6_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/iotbx_dsn6_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/determine_unit_cell_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/determine_unit_cell_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/determine_unit_cell_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/determine_unit_cell_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyCapsule_New used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyCapsule_GetPointer used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PySlice_Type used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Clear used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Next used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cctbx: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libcctbx-dev (in debian/libcctbx-dev); do_strip: , oemstrip: pkgstriptranslations: processing libcctbx0 (in debian/libcctbx0); do_strip: , oemstrip: pkgstriptranslations: processing python3-cctbx (in debian/python3-cctbx); do_strip: , oemstrip: pkgstriptranslations: processing libcctbx0-dbgsym (in debian/.debhelper/libcctbx0/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libcctbx-dev/DEBIAN/control, package libcctbx-dev, directory debian/libcctbx-dev INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... pkgstripfiles: processing control file: debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control, package libcctbx0-dbgsym, directory debian/.debhelper/libcctbx0/dbgsym-root dpkg-deb: building package 'libcctbx0-dbgsym' in 'debian/.debhelper/scratch-space/build-libcctbx0/libcctbx0-dbgsym_2021.12+ds1-2_arm64.deb'. INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libcctbx0/DEBIAN/control, package libcctbx0, directory debian/libcctbx0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcctbx0 ... pkgstripfiles: No PNG files. INFO: pkgstripfiles: waiting for lock (libcctbx-dev) ... dpkg-deb: building package 'libcctbx0' in '../libcctbx0_2021.12+ds1-2_arm64.deb'. Searching for duplicated docs in dependency libcctbx0... symlinking changelog.Debian.gz in libcctbx-dev to file in libcctbx0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libcctbx-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcctbx-dev' in '../libcctbx-dev_2021.12+ds1-2_arm64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-cctbx/DEBIAN/control, package python3-cctbx, directory debian/python3-cctbx Searching for duplicated docs in dependency libcctbx0... symlinking changelog.Debian.gz in python3-cctbx to file in libcctbx0 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-cctbx ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-cctbx' in '../python3-cctbx_2021.12+ds1-2_arm64.deb'. Renaming libcctbx0-dbgsym_2021.12+ds1-2_arm64.deb to libcctbx0-dbgsym_2021.12+ds1-2_arm64.ddeb dpkg-genbuildinfo --build=any -O../cctbx_2021.12+ds1-2_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../cctbx_2021.12+ds1-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-02-13T18:02:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cctbx_2021.12+ds1-2_arm64.changes: ---------------------------------- Format: 1.8 Date: Sun, 13 Feb 2022 08:27:32 +0000 Source: cctbx Binary: libcctbx-dev libcctbx0 python3-cctbx Built-For-Profiles: noudeb Architecture: arm64 Version: 2021.12+ds1-2 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Neil Williams Description: libcctbx-dev - Computational Crystallography Toolbox (headers) libcctbx0 - Computational Crystallography Toolbox python3-cctbx - Python Toolbox for crystallography Changes: cctbx (2021.12+ds1-2) unstable; urgency=medium . * Source only upload Checksums-Sha1: 9f3deba34dd1ef752c20b1870eb5a306bbc11002 13756 cctbx_2021.12+ds1-2_arm64.buildinfo a1453202d10f1a7cf37f38ce662fd07b25cf6655 102870 libcctbx-dev_2021.12+ds1-2_arm64.deb c69236a731a2b45b22f0bb36fc0c41de69e80b04 81897176 libcctbx0-dbgsym_2021.12+ds1-2_arm64.ddeb c0ed650e15705cf8d7b37b9c16b1eb4b182b3517 10934916 libcctbx0_2021.12+ds1-2_arm64.deb ae5ebb511b670d3be29ca8ef17b3cc59c5b636d3 775338 python3-cctbx_2021.12+ds1-2_arm64.deb Checksums-Sha256: b78a8a62616afadd031300c54e2f3ed86f2619837c54409d3ec119123a7352d1 13756 cctbx_2021.12+ds1-2_arm64.buildinfo 380ae151317c7096bf319f7ec03aecf5a5f711fddb7b0f3336755798180a89d1 102870 libcctbx-dev_2021.12+ds1-2_arm64.deb 116f0cc40d336e6b5c1e78c5ec71685c789635848d391da04e5affe1933a7e9e 81897176 libcctbx0-dbgsym_2021.12+ds1-2_arm64.ddeb 1a4a03b95ec5ca282d55abaa9663f91c827d909af48156b2c1182e3db8f67483 10934916 libcctbx0_2021.12+ds1-2_arm64.deb a53bc7380a5a5ac3cd9605edb741aac36b52143ac21c8e2043b2763361014002 775338 python3-cctbx_2021.12+ds1-2_arm64.deb Files: a97d56f5580ea300a25e4a3683e81d45 13756 science optional cctbx_2021.12+ds1-2_arm64.buildinfo 378583e84eddcc8f6d5c9fb33c9b98b6 102870 devel optional libcctbx-dev_2021.12+ds1-2_arm64.deb 6ab558c62a2038c660f168dc5a368406 81897176 debug optional libcctbx0-dbgsym_2021.12+ds1-2_arm64.ddeb a32904f1404d975f05bf4a53b48defcd 10934916 libs optional libcctbx0_2021.12+ds1-2_arm64.deb 618ca5024681430f45f196e9ac6cf762 775338 python optional python3-cctbx_2021.12+ds1-2_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: cctbx Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx Architecture: arm64 Version: 2021.12+ds1-2 Checksums-Md5: 378583e84eddcc8f6d5c9fb33c9b98b6 102870 libcctbx-dev_2021.12+ds1-2_arm64.deb 6ab558c62a2038c660f168dc5a368406 81897176 libcctbx0-dbgsym_2021.12+ds1-2_arm64.ddeb a32904f1404d975f05bf4a53b48defcd 10934916 libcctbx0_2021.12+ds1-2_arm64.deb 618ca5024681430f45f196e9ac6cf762 775338 python3-cctbx_2021.12+ds1-2_arm64.deb Checksums-Sha1: a1453202d10f1a7cf37f38ce662fd07b25cf6655 102870 libcctbx-dev_2021.12+ds1-2_arm64.deb c69236a731a2b45b22f0bb36fc0c41de69e80b04 81897176 libcctbx0-dbgsym_2021.12+ds1-2_arm64.ddeb c0ed650e15705cf8d7b37b9c16b1eb4b182b3517 10934916 libcctbx0_2021.12+ds1-2_arm64.deb ae5ebb511b670d3be29ca8ef17b3cc59c5b636d3 775338 python3-cctbx_2021.12+ds1-2_arm64.deb Checksums-Sha256: 380ae151317c7096bf319f7ec03aecf5a5f711fddb7b0f3336755798180a89d1 102870 libcctbx-dev_2021.12+ds1-2_arm64.deb 116f0cc40d336e6b5c1e78c5ec71685c789635848d391da04e5affe1933a7e9e 81897176 libcctbx0-dbgsym_2021.12+ds1-2_arm64.ddeb 1a4a03b95ec5ca282d55abaa9663f91c827d909af48156b2c1182e3db8f67483 10934916 libcctbx0_2021.12+ds1-2_arm64.deb a53bc7380a5a5ac3cd9605edb741aac36b52143ac21c8e2043b2763361014002 775338 python3-cctbx_2021.12+ds1-2_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Sun, 13 Feb 2022 18:02:14 +0000 Build-Path: /<>/cctbx-2021.12+ds1 Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu5), autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20220109.1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-6ubuntu1), binutils (= 2.38-1ubuntu1), binutils-aarch64-linux-gnu (= 2.38-1ubuntu1), binutils-common (= 2.38-1ubuntu1), blt (= 2.5.3+dfsg-4.1build1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-16ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1ubuntu1), debugedit (= 1:5.0-4), dh-autoreconf (= 20), dh-exec (= 0.23.4build1), dh-python (= 5.20220119), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.21.1ubuntu1), dpkg-dev (= 1.21.1ubuntu1), dwz (= 0.14-1build1), fftw-dev (= 2.1.5-6), fftw2 (= 2.1.5-6), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), fonts-lyx (= 2.3.6-1), fonts-urw-base35 (= 20200910-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-16ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-16ubuntu1), gcc-11-base (= 11.2.0-16ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4ubuntu2), hdf5-helpers (= 1.10.7+repack-4ubuntu2), hostname (= 3.23ubuntu1), ibverbs-providers (= 39.0-1), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), jq (= 1.6-2.1ubuntu2), libacl1 (= 2.3.1-1), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libann-dev (= 1.1.2+doc-7build1), libann0 (= 1.1.2+doc-7build1), libantlr3c-3.4-0 (= 3.4+dfsg-4build1), libantlr3c-dev (= 3.4+dfsg-4build1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-16ubuntu1), libatomic1 (= 11.2.0-16ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.38-1ubuntu1), libblas3 (= 3.10.0-2ubuntu1), libblkid1 (= 2.37.2-4ubuntu1), libboost-atomic1.74-dev (= 1.74.0-14ubuntu2), libboost-atomic1.74.0 (= 1.74.0-14ubuntu2), libboost-chrono1.74-dev (= 1.74.0-14ubuntu2), libboost-chrono1.74.0 (= 1.74.0-14ubuntu2), libboost-date-time1.74-dev (= 1.74.0-14ubuntu2), libboost-date-time1.74.0 (= 1.74.0-14ubuntu2), libboost-dev (= 1.74.0.3ubuntu6), libboost-numpy-dev (= 1.74.0.3ubuntu6), libboost-numpy1.74-dev (= 1.74.0-14ubuntu2), libboost-numpy1.74.0 (= 1.74.0-14ubuntu2), libboost-python-dev (= 1.74.0.3ubuntu6), libboost-python1.74-dev (= 1.74.0-14ubuntu2), libboost-python1.74.0 (= 1.74.0-14ubuntu2), libboost-serialization1.74-dev (= 1.74.0-14ubuntu2), libboost-serialization1.74.0 (= 1.74.0-14ubuntu2), libboost-system1.74-dev (= 1.74.0-14ubuntu2), libboost-system1.74.0 (= 1.74.0-14ubuntu2), libboost-thread-dev (= 1.74.0.3ubuntu6), libboost-thread1.74-dev (= 1.74.0-14ubuntu2), libboost-thread1.74.0 (= 1.74.0-14ubuntu2), libboost1.74-dev (= 1.74.0-14ubuntu2), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.5-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.35-0ubuntu1), libc-dev-bin (= 2.35-0ubuntu1), libc6 (= 2.35-0ubuntu1), libc6-dev (= 2.35-0ubuntu1), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build2), libcbf-dev (= 0.9.6+dfsg1-3), libcbf1 (= 0.9.6+dfsg1-3), libcc1-0 (= 11.2.0-16ubuntu1), libccp4-data (= 6.5.1-5), libccp4-dev (= 6.5.1-5), libccp4c0 (= 6.5.1-5), libccp4f0 (= 6.5.1-5), libclipper-dev (= 2.1.20201109-1), libclipper2 (= 2.1.20201109-1), libcom-err2 (= 1.46.5-2ubuntu1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38-1ubuntu1), libctf0 (= 2.38-1ubuntu1), libcurl3-gnutls (= 7.81.0-1), libcurl4 (= 7.81.0-1), libcurl4-openssl-dev (= 7.81.0-1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdpkg-perl (= 1.21.1ubuntu1), libdw1 (= 0.186-1), libedit2 (= 3.1-20210910-1), libeigen3-dev (= 3.4.0-2ubuntu2), libelf1 (= 0.186-1), libevent-core-2.1-7 (= 2.1.12-stable-1build2), libevent-pthreads-2.1-7 (= 2.1.12-stable-1build2), libexpat1 (= 2.4.4-1), libexpat1-dev (= 2.4.4-1), libfabric1 (= 1.11.0-3), libffi8 (= 3.4.2-4), libfftw3-bin (= 3.3.8-2ubuntu7), libfftw3-dev (= 3.3.8-2ubuntu7), libfftw3-double3 (= 3.3.8-2ubuntu7), libfftw3-long3 (= 3.3.8-2ubuntu7), libfftw3-single3 (= 3.3.8-2ubuntu7), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.1+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-16ubuntu1), libgcc-s1 (= 11.2.0-16ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 11.2.0-16ubuntu1), libglib2.0-0 (= 2.71.1-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.3-4ubuntu1), libgomp1 (= 11.2.0-16ubuntu1), libgpg-error0 (= 1.43-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.19.2-1), libharfbuzz0b (= 2.7.4-1ubuntu3), libhdf5-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-cpp-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-dev (= 1.10.7+repack-4ubuntu2), libhdf5-fortran-102 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-cpp-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-fortran-100 (= 1.10.7+repack-4ubuntu2), libhogweed6 (= 3.7.3-1build1), libhwasan0 (= 11.2.0-16ubuntu1), libhwloc-plugins (= 2.7.0-2), libhwloc15 (= 2.7.0-2), libibverbs1 (= 39.0-1), libicu70 (= 70.1-2), libidn2-0 (= 2.3.2-2), libimagequant0 (= 2.17.0-1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-16ubuntu1), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjq1 (= 1.6-2.1ubuntu2), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libjs-jquery-ui (= 1.13.0+dfsg-1), libjs-sphinxdoc (= 4.3.2-1), libjs-underscore (= 1.13.2~dfsg-2), libk5crypto3 (= 1.19.2-1), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.19.2-1), libkrb5support0 (= 1.19.2-1), liblapack3 (= 3.10.0-2ubuntu1), liblbfgsb0 (= 3.0+dfsg.3-10), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.11+dfsg-1~exp1ubuntu2), liblsan0 (= 11.2.0-16ubuntu1), liblz4-1 (= 1.9.3-2build1), liblz4-dev (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmmdb2-0 (= 2.0.20-1), libmmdb2-dev (= 2.0.20-1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libncursesw6 (= 6.3-2), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build2), libnl-3-200 (= 3.5.0-0.1), libnl-route-3-200 (= 3.5.0-0.1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libnuma1 (= 2.0.14-3ubuntu1), libonig5 (= 6.9.7.1-2), libopenjp2-7 (= 2.4.0-6), libopenmpi3 (= 4.1.2-1ubuntu1), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11ubuntu1), libpam-modules-bin (= 1.4.0-11ubuntu1), libpam-runtime (= 1.4.0-11ubuntu1), libpam0g (= 1.4.0-11ubuntu1), libpciaccess0 (= 0.16-3), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.5-1), libpmix2 (= 4.1.1~rc6-1ubuntu1), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libpython3-all-dev (= 3.10.1-0ubuntu1), libpython3-dev (= 3.10.1-0ubuntu1), libpython3-stdlib (= 3.10.1-0ubuntu1), libpython3.10 (= 3.10.2-1), libpython3.10-dev (= 3.10.2-1), libpython3.10-minimal (= 3.10.2-1), libpython3.10-stdlib (= 3.10.2-1), libpython3.9 (= 3.9.10-1), libpython3.9-dev (= 3.9.10-1), libpython3.9-minimal (= 3.9.10-1), libpython3.9-stdlib (= 3.9.10-1), libqhull-r8.0 (= 2020.2-4), libraqm0 (= 0.7.0-4ubuntu1), librdmacm1 (= 39.0-1), libreadline8 (= 8.1.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-3), libsasl2-modules-db (= 2.1.27+dfsg2-3), libseccomp2 (= 2.5.2-2ubuntu3), libselinux1 (= 3.3-1build1), libsemanage-common (= 3.3-1build1), libsemanage2 (= 3.3-1build1), libsepol2 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.37.2-4ubuntu1), libsqlite3-0 (= 3.37.2-2), libssh-4 (= 0.9.6-2), libssl-dev (= 3.0.1-0ubuntu1), libssl3 (= 3.0.1-0ubuntu1), libstdc++-11-dev (= 11.2.0-16ubuntu1), libstdc++6 (= 11.2.0-16ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.9-0ubuntu2), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libtiff5 (= 4.3.0-4), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-16ubuntu1), libubsan1 (= 11.2.0-16ubuntu1), libuchardet0 (= 0.0.7-1build1), libucx0 (= 1.12.1~rc1-1), libudev1 (= 249.9-0ubuntu2), libunistring2 (= 1.0-1), libuuid1 (= 2.37.2-4ubuntu1), libwebp7 (= 1.2.1-6), libwebpdemux2 (= 1.2.1-6), libwebpmux3 (= 1.2.1-6), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-1), libxft2 (= 2.3.3-0ubuntu4), libxml2 (= 2.9.12+dfsg-5build1), libxnvctrl0 (= 470.57.01-0ubuntu4), libxrender1 (= 1:0.9.10-1build3), libxslt1.1 (= 1.1.34-4build1), libxss1 (= 1:1.2.3-1build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-22.22), login (= 1:4.8.1-2ubuntu1), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 19), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.10.1-1), mawk (= 1.3.4.20200120-3), media-types (= 5.0.0), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), ocl-icd-libopencl1 (= 2.2.14-3), passwd (= 1:4.8.1-2ubuntu1), patch (= 2.7.6-7build1), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), python-matplotlib-data (= 3.5.1-2), python3 (= 3.10.1-0ubuntu1), python3-all (= 3.10.1-0ubuntu1), python3-all-dev (= 3.10.1-0ubuntu1), python3-appdirs (= 1.4.4-2), python3-attr (= 21.2.0-1), python3-biopython (= 1.79+dfsg-1), python3-brotli (= 1.0.9-2build4), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.10.1-0ubuntu1), python3-distutils (= 3.9.10-1), python3-fonttools (= 4.29.1-1), python3-fs (= 2.4.12-1), python3-future (= 0.18.2-5), python3-kiwisolver (= 1.3.2-1), python3-lib2to3 (= 3.9.10-1), python3-lxml (= 4.7.1-1), python3-lz4 (= 3.1.3+dfsg-1build2), python3-matplotlib (= 3.5.1-2), python3-minimal (= 3.10.1-0ubuntu1), python3-mpmath (= 1.2.1-2), python3-msgpack (= 1.0.2-2), python3-numpy (= 1:1.21.5-1), python3-packaging (= 21.3-1), python3-pil (= 9.0.0-1build1), python3-pil.imagetk (= 9.0.0-1build1), python3-pkg-resources (= 59.6.0-1.2), python3-psutil (= 5.9.0-1), python3-pyparsing (= 2.4.7-1), python3-renderpm (= 3.6.5-1), python3-reportlab (= 3.6.5-1), python3-reportlab-accel (= 3.6.5-1), python3-scipy (= 1.7.1-1ubuntu1), python3-setuptools (= 59.6.0-1.2), python3-six (= 1.16.0-3), python3-sympy (= 1.9-1), python3-tk (= 3.9.10-1), python3-tz (= 2021.3-1), python3-ufolib2 (= 0.13.1+dfsg1-1), python3.10 (= 3.10.2-1), python3.10-dev (= 3.10.2-1), python3.10-minimal (= 3.10.2-1), python3.9 (= 3.9.10-1), python3.9-dev (= 3.9.10-1), python3.9-minimal (= 3.9.10-1), readline-common (= 8.1.2-1), rpcsvc-proto (= 1.4.2-0ubuntu5), scons (= 4.0.1+dfsg-2), sed (= 4.8-1ubuntu1), sensible-utils (= 0.0.17), sfftw-dev (= 2.1.5-6), sfftw2 (= 2.1.5-6), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build2), tk8.6-blt2.5 (= 2.5.3+dfsg-4.1build1), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unicode-data (= 14.0.0-1.1), util-linux (= 2.37.2-4ubuntu1), x11-common (= 1:7.7+23ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1644740852" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libcctbx-dev_2021.12+ds1-2_arm64.deb ------------------------------------ new Debian package, version 2.0. size 102870 bytes: control archive=3538 bytes. 595 bytes, 15 lines control 8495 bytes, 109 lines md5sums Package: libcctbx-dev Source: cctbx Version: 2021.12+ds1-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 815 Depends: libcctbx0 (= 2021.12+ds1-2) Section: devel Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox (headers) Header files for packages using cctbx shared libraries supporting the cctbx, cbflib, scitbx, crys3d, libtbx, iotbx, wxtbx and smtbx modules. drwxr-xr-x root/root 0 2022-02-13 08:27 ./ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/ -rw-r--r-- root/root 5808 2022-01-01 18:15 ./usr/include/cctbx/coordinates.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/eltbx/ -rw-r--r-- root/root 1863 2022-01-01 18:15 ./usr/include/cctbx/eltbx/basic.h -rw-r--r-- root/root 2127 2022-02-13 08:27 ./usr/include/cctbx/eltbx/covalent_radii.h -rw-r--r-- root/root 2828 2022-01-01 18:15 ./usr/include/cctbx/eltbx/fp_fdp.h -rw-r--r-- root/root 3979 2022-01-01 18:15 ./usr/include/cctbx/eltbx/henke.h -rw-r--r-- root/root 3107 2022-01-01 18:15 ./usr/include/cctbx/eltbx/icsd_radii.h -rw-r--r-- root/root 3514 2022-01-01 18:15 ./usr/include/cctbx/eltbx/neutron.h -rw-r--r-- root/root 2165 2022-01-01 18:15 ./usr/include/cctbx/eltbx/tiny_pse.h -rw-r--r-- root/root 2151 2022-01-01 18:15 ./usr/include/cctbx/eltbx/wavelengths.h -rw-r--r-- root/root 11495 2022-01-01 18:15 ./usr/include/cctbx/eltbx/xray_scattering.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/eltbx/xray_scattering/ -rw-r--r-- root/root 2284 2022-01-01 18:15 ./usr/include/cctbx/eltbx/xray_scattering/form_factor.h -rw-r--r-- root/root 1664 2022-01-01 18:15 ./usr/include/cctbx/eltbx/xray_scattering/gaussian.h -rw-r--r-- root/root 2301 2022-01-01 18:15 ./usr/include/cctbx/error.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/gltbx/ -rw-r--r-- root/root 1239 2022-01-01 18:15 ./usr/include/cctbx/gltbx/error.h -rw-r--r-- root/root 6351 2022-01-01 18:15 ./usr/include/cctbx/hendrickson_lattman.h -rw-r--r-- root/root 190 2022-01-01 18:15 ./usr/include/cctbx/import_scitbx_af.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/iotbx/ -rw-r--r-- root/root 2301 2022-01-01 18:15 ./usr/include/cctbx/iotbx/error.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/math/ -rw-r--r-- root/root 1439 2022-01-01 18:15 ./usr/include/cctbx/math/loop_n_from_m.h -rw-r--r-- root/root 3831 2022-01-01 18:15 ./usr/include/cctbx/miller.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/miller/ -rw-r--r-- root/root 3823 2022-01-01 18:15 ./usr/include/cctbx/miller/index_generator.h -rw-r--r-- root/root 11625 2022-01-01 18:15 ./usr/include/cctbx/miller/sym_equiv.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/mmtbx/ -rw-r--r-- root/root 2174 2022-01-01 18:15 ./usr/include/cctbx/mmtbx/error.h -rw-r--r-- root/root 190 2022-01-01 18:15 ./usr/include/cctbx/mmtbx/import_scitbx_af.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/accessors/ -rw-r--r-- root/root 6459 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/c_grid.h -rw-r--r-- root/root 788 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/c_index_1d_calculator.h -rw-r--r-- root/root 11576 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/flex_grid.h -rw-r--r-- root/root 290 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/mat_grid.h -rw-r--r-- root/root 608 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/trivial.h -rw-r--r-- root/root 761 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/array_adaptor.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/detail/ -rw-r--r-- root/root 515 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/auto_allocator.h -rw-r--r-- root/root 9246 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/generic_array_functors.h -rw-r--r-- root/root 10267 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/generic_array_operators.h -rw-r--r-- root/root 3120 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/misc.h -rw-r--r-- root/root 6386 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/detail/operator_functors.h -rw-r--r-- root/root 6033 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/push_back_etc.h -rw-r--r-- root/root 1932 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/reducing_boolean_mem_fun.h -rw-r--r-- root/root 3470 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/ref_helpers.h -rw-r--r-- root/root 8115 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/detail/std_imports.h -rw-r--r-- root/root 3840 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/tiny_helpers.h -rw-r--r-- root/root 363 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/error.h -rw-r--r-- root/root 2612 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/loops.h -rw-r--r-- root/root 2774 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/memory.h -rw-r--r-- root/root 3825 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/misc_functions.h -rw-r--r-- root/root 7239 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/operator_traits_builtin.h -rw-r--r-- root/root 14978 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/ref.h -rw-r--r-- root/root 14796 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/ref_reductions.h -rw-r--r-- root/root 3152 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/shared.h -rw-r--r-- root/root 11091 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/shared_plain.h -rw-r--r-- root/root 1599 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/small.h -rw-r--r-- root/root 58690 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/small_algebra.h -rw-r--r-- root/root 4156 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/small_plain.h -rw-r--r-- root/root 3714 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/small_reductions.h -rw-r--r-- root/root 1013 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/tiny.h -rw-r--r-- root/root 640 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/tiny_mat_ref.h -rw-r--r-- root/root 1732 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/tiny_plain.h -rw-r--r-- root/root 3654 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/tiny_reductions.h -rw-r--r-- root/root 2623 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/tiny_types.h -rw-r--r-- root/root 1431 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/type_traits.h -rw-r--r-- root/root 1879 2022-01-01 18:15 ./usr/include/cctbx/scitbx/constants.h -rw-r--r-- root/root 2350 2022-01-01 18:15 ./usr/include/cctbx/scitbx/error.h -rw-r--r-- root/root 4754 2022-01-01 18:15 ./usr/include/cctbx/scitbx/error_utils.h -rw-r--r-- root/root 25139 2022-01-01 18:15 ./usr/include/cctbx/scitbx/mat3.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/math/ -rw-r--r-- root/root 2548 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/approx_equal.h -rw-r--r-- root/root 442 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/atanh.h -rw-r--r-- root/root 10433 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/bessel.h -rw-r--r-- root/root 562 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/compile_time.h -rw-r--r-- root/root 1326 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/erf.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/math/erf/ -rw-r--r-- root/root 2494 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/erf/constants.h -rw-r--r-- root/root 6740 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/erf/engine.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/math/gaussian/ -rw-r--r-- root/root 6375 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/gaussian/sum.h -rw-r--r-- root/root 2657 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/gaussian/term.h -rw-r--r-- root/root 4361 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/gcd.h -rw-r--r-- root/root 771 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/modulo.h -rw-r--r-- root/root 292 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/traits.h -rw-r--r-- root/root 3883 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/utils.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/matrix/ -rw-r--r-- root/root 2132 2022-01-01 18:15 ./usr/include/cctbx/scitbx/matrix/as_xyz.h -rw-r--r-- root/root 1872 2022-01-01 18:15 ./usr/include/cctbx/scitbx/numerical.h -rw-r--r-- root/root 1732 2022-01-01 18:15 ./usr/include/cctbx/scitbx/rational.h -rw-r--r-- root/root 22179 2022-01-01 18:15 ./usr/include/cctbx/scitbx/sym_mat3.h -rw-r--r-- root/root 197 2022-01-01 18:15 ./usr/include/cctbx/scitbx/type_holder.h -rw-r--r-- root/root 16941 2022-01-01 18:15 ./usr/include/cctbx/scitbx/vec3.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/sgtbx/ -rw-r--r-- root/root 1655 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/basic.h -rw-r--r-- root/root 4194 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/brick.h -rw-r--r-- root/root 10494 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/change_of_basis_op.h -rw-r--r-- root/root 4708 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/group_codes.h -rw-r--r-- root/root 556 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/lattice_tr.h -rw-r--r-- root/root 688 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/miller_ops.h -rw-r--r-- root/root 2961 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/parse_string.h -rw-r--r-- root/root 5057 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/phase_info.h -rw-r--r-- root/root 3992 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/reciprocal_space_asu.h -rw-r--r-- root/root 3959 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/reciprocal_space_reference_asu.h -rw-r--r-- root/root 2553 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/reference_settings.h -rw-r--r-- root/root 11934 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/rot_mx.h -rw-r--r-- root/root 1423 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/rot_mx_info.h -rw-r--r-- root/root 1180 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/rotation_matrices.h -rw-r--r-- root/root 684 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/row_echelon_solve.h -rw-r--r-- root/root 20589 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/rt_mx.h -rw-r--r-- root/root 859 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/select_generators.h -rw-r--r-- root/root 802 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/smith_normal_form.h -rw-r--r-- root/root 27947 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/space_group.h -rw-r--r-- root/root 10467 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/space_group_type.h -rw-r--r-- root/root 13091 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/symbols.h -rw-r--r-- root/root 1629 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/tr_group.h -rw-r--r-- root/root 6560 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/tr_vec.h -rw-r--r-- root/root 458 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/utils.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/smtbx/ -rw-r--r-- root/root 2301 2022-01-01 18:15 ./usr/include/cctbx/smtbx/error.h -rw-r--r-- root/root 152 2022-01-01 18:15 ./usr/include/cctbx/smtbx/import_scitbx_af.h -rw-r--r-- root/root 43427 2022-01-01 18:15 ./usr/include/cctbx/uctbx.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so -> boost_adaptbx_boost_thread_test_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so -> boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so -> boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so -> boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so -> boost_adaptbx_graph_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so -> boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so -> boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_metric_ext.so -> boost_adaptbx_graph_metric_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so -> boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_utility_ext.so -> boost_adaptbx_graph_utility_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so -> boost_adaptbx_python_streambuf_test_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_optional_ext.so -> boost_optional_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_python_hybrid_times_ext.so -> boost_python_hybrid_times_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_python_meta_ext.so -> boost_python_meta_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_rational_ext.so -> boost_rational_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_tuple_ext.so -> boost_tuple_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_adp_restraints_ext.so -> cctbx_adp_restraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_adptbx_ext.so -> cctbx_adptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_anharmonic_ext.so -> cctbx_anharmonic_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_array_family_flex_ext.so -> cctbx_array_family_flex_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_asymmetric_map_ext.so -> cctbx_asymmetric_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_covariance_ext.so -> cctbx_covariance_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_crystal_ext.so -> cctbx_crystal_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_dmtbx_ext.so -> cctbx_dmtbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so -> cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so -> cctbx_eltbx_chemical_elements_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so -> cctbx_eltbx_covalent_radii_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so -> cctbx_eltbx_fp_fdp_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_henke_ext.so -> cctbx_eltbx_henke_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so -> cctbx_eltbx_icsd_radii_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_neutron_ext.so -> cctbx_eltbx_neutron_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_sasaki_ext.so -> cctbx_eltbx_sasaki_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so -> cctbx_eltbx_tiny_pse_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_wavelengths_ext.so -> cctbx_eltbx_wavelengths_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so -> cctbx_eltbx_xray_scattering_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_emma_ext.so -> cctbx_emma_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_french_wilson_ext.so -> cctbx_french_wilson_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_geometry_ext.so -> cctbx_geometry_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_geometry_restraints_ext.so -> cctbx_geometry_restraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_maptbx_ext.so -> cctbx_maptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_masks_ext.so -> cctbx_masks_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_math_ext.so -> cctbx_math_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_merging_ext.so -> cctbx_merging_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_miller_ext.so -> cctbx_miller_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_multipolar_ext.so -> cctbx_multipolar_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_orientation_ext.so -> cctbx_orientation_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_sgtbx_asu_ext.so -> cctbx_sgtbx_asu_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_sgtbx_ext.so -> cctbx_sgtbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_statistics_ext.so -> cctbx_statistics_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_symmetry_search_ext.so -> cctbx_symmetry_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_translation_search_ext.so -> cctbx_translation_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_uctbx_ext.so -> cctbx_uctbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_xray_ext.so -> cctbx_xray_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/cctbx_xray_observations_ext.so -> cctbx_xray_observations_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/determine_unit_cell_ext.so -> determine_unit_cell_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/fable_ext.so -> fable_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_detectors_bruker_ext.so -> iotbx_detectors_bruker_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_detectors_ext.so -> iotbx_detectors_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_dsn6_map_ext.so -> iotbx_dsn6_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_dtrek_ext.so -> iotbx_dtrek_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_pdb_ext.so -> iotbx_pdb_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_pdb_hierarchy_ext.so -> iotbx_pdb_hierarchy_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_scalepack_ext.so -> iotbx_scalepack_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_shelx_ext.so -> iotbx_shelx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_wildcard_ext.so -> iotbx_wildcard_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/iotbx_xplor_ext.so -> iotbx_xplor_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libasymmetric_map.so -> libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libcctbx.so -> libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libomptbx.so -> libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/omptbx_ext.so -> omptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_array_family_flex_ext.so -> scitbx_array_family_flex_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_array_family_shared_ext.so -> scitbx_array_family_shared_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_cubicle_neighbors_ext.so -> scitbx_cubicle_neighbors_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_fftpack_ext.so -> scitbx_fftpack_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_glmtbx_ext.so -> scitbx_glmtbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_graphics_utils_ext.so -> scitbx_graphics_utils_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_iso_surface_ext.so -> scitbx_iso_surface_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_lbfgs_ext.so -> scitbx_lbfgs_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_lbfgsb_ext.so -> scitbx_lbfgsb_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_linalg_ext.so -> scitbx_linalg_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_lstbx_normal_equations_ext.so -> scitbx_lstbx_normal_equations_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_math_ext.so -> scitbx_math_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_minpack_ext.so -> scitbx_minpack_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_r3_utils_ext.so -> scitbx_r3_utils_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_random_ext.so -> scitbx_random_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_rigid_body_ext.so -> scitbx_rigid_body_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_sparse_ext.so -> scitbx_sparse_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_stl_map_ext.so -> scitbx_stl_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_stl_set_ext.so -> scitbx_stl_set_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_stl_vector_ext.so -> scitbx_stl_vector_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_suffixtree_shared_ext.so -> scitbx_suffixtree_shared_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_suffixtree_single_ext.so -> scitbx_suffixtree_single_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/scitbx_wigner_ext.so -> scitbx_wigner_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/smtbx_ab_initio_ext.so -> smtbx_ab_initio_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/smtbx_array_family_ext.so -> smtbx_array_family_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/smtbx_refinement_constraints_ext.so -> smtbx_refinement_constraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/smtbx_refinement_least_squares_ext.so -> smtbx_refinement_least_squares_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/smtbx_refinement_restraints_ext.so -> smtbx_refinement_restraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/smtbx_stl_map_ext.so -> smtbx_stl_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/smtbx_structure_factors_direct_ext.so -> smtbx_structure_factors_direct_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/std_pair_ext.so -> std_pair_ext.so.0.0.1 drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/doc/libcctbx-dev/ lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/share/doc/libcctbx-dev/changelog.Debian.gz -> ../libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 38507 2022-02-13 08:17 ./usr/share/doc/libcctbx-dev/copyright libcctbx0_2021.12+ds1-2_arm64.deb --------------------------------- new Debian package, version 2.0. size 10934916 bytes: control archive=4692 bytes. 1489 bytes, 28 lines control 10137 bytes, 110 lines md5sums 5671 bytes, 108 lines shlibs 74 bytes, 2 lines triggers Package: libcctbx0 Source: cctbx Version: 2021.12+ds1-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 60575 Depends: libboost-numpy1.74.0 (>= 1.74.0), libboost-numpy1.74.0-py39, libboost-python1.74.0 (>= 1.74.0), libboost-python1.74.0-py39, libboost-thread1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 4.5), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox Computational Crystallography Toolbox contains following modules: boost_adaptbx: wrappers for Boost functionality in CCTBX cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. crys3d: Modules for the display of molecules, electron density, and reciprocal space data. fable: Fortran EMulation library for porting Fortran77 to C++. iotbx: Working with common crystallographic file formats. omptbx: OpenMP interface. scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. smtbx: Small-Molecule crystallography. wxtbx: wxPython controls used in the Phenix GUI and various utilities drwxr-xr-x root/root 0 2022-02-13 08:27 ./ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0 -> boost_adaptbx_boost_thread_test_ext.so.0.0.1 -rw-r--r-- root/root 80952 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0 -> boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -rw-r--r-- root/root 179464 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0 -> boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -rw-r--r-- root/root 208080 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0 -> boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -rw-r--r-- root/root 130048 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0 -> boost_adaptbx_graph_ext.so.0.0.1 -rw-r--r-- root/root 1242232 2022-02-13 08:27 ./usr/lib/aarch64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 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------------------------------------- new Debian package, version 2.0. size 775338 bytes: control archive=12199 bytes. 640 bytes, 15 lines control 42077 bytes, 416 lines md5sums 263 bytes, 12 lines * postinst #!/bin/sh 412 bytes, 12 lines * prerm #!/bin/sh Package: python3-cctbx Source: cctbx Version: 2021.12+ds1-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 4630 Depends: libcctbx0 (= 2021.12+ds1-2), ca-certificates, python3:any Section: python Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Python Toolbox for crystallography Python Modules for crystallographic applications, useful for both small-molecule and macro-molecular crystallography and modules for general scientific calculations. drwxr-xr-x root/root 0 2022-02-13 08:27 ./ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/python3/ 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+------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: n/a Build-Time: 2287 Distribution: jammy-proposed Host Architecture: arm64 Install-Time: 132 Job: cctbx_2021.12+ds1-2.dsc Machine Architecture: arm64 Package: cctbx Package-Time: 2423 Source-Version: 2021.12+ds1-2 Space: n/a Status: successful Version: 2021.12+ds1-2 -------------------------------------------------------------------------------- Finished at 2022-02-13T18:02:16Z Build needed 00:40:23, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=arm64 PACKAGEBUILD-23162307 Scanning for processes to kill in build PACKAGEBUILD-23162307