https://launchpad.net/ubuntu/+source/cctbx/2021.12+ds1-2/+build/23162310 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-074 5.11.0-1026-generic #28~20.04.1-Ubuntu SMP Fri Jan 7 12:35:22 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_206~519~ubuntu18.04.1 python3-lpbuildd_206~519~ubuntu18.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 Feb 17:16:04 ntpdate[1744548]: adjust time server 10.211.37.1 offset -0.000521 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23162310 --image-type chroot /home/buildd/filecache-default/03bec7884d85d5bd8bcd177f093129b6620b2195 Creating target for build PACKAGEBUILD-23162310 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23162310 Starting target for build PACKAGEBUILD-23162310 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23162310 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-23162310 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23162310 Updating target for build PACKAGEBUILD-23162310 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main riscv64 Packages [1296 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [513 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe riscv64 Packages [12.7 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5607 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 Packages [217 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [94.6 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 Packages [1185 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [546 kB] Fetched 22.7 MB in 60s (380 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libperl5.34 libsemanage2 libsepol2 libssl3 perl-modules-5.34 The following packages will be upgraded: apt base-files bash binutils binutils-common binutils-riscv64-linux-gnu bsdutils bzip2 ca-certificates coreutils cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs fakeroot g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep init init-system-helpers libacl1 libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdebconfclient0 libdpkg-perl libext2fs2 libfakeroot libffi8 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libudev1 libunistring2 libuuid1 libxxhash0 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mawk mount ncurses-base ncurses-bin openssl passwd perl perl-base pkgbinarymangler readline-common sed sensible-utils systemd systemd-sysv systemd-timesyncd sysvinit-utils tzdata usrmerge util-linux 123 upgraded, 5 newly installed, 1 to remove and 0 not upgraded. Need to get 89.0 MB of archives. After this operation, 55.0 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcrypt-dev riscv64 1:4.4.27-1 [249 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libc6-dev riscv64 2.35-0ubuntu1 [3235 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libc-dev-bin riscv64 2.35-0ubuntu1 [18.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 perl-modules-5.34 all 5.34.0-3ubuntu1 [2975 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libperl5.34 riscv64 5.34.0-3ubuntu1 [4206 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 perl riscv64 5.34.0-3ubuntu1 [232 kB] Get:7 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 perl-base riscv64 5.34.0-3ubuntu1 [1639 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main riscv64 bzip2 riscv64 1.0.8-5 [33.9 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main riscv64 libbz2-1.0 riscv64 1.0.8-5 [36.2 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgdbm6 riscv64 1.23-1 [29.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgdbm-compat4 riscv64 1.23-1 [5860 B] Get:12 http://ftpmaster.internal/ubuntu jammy/main riscv64 debconf all 1.5.79 [126 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpam0g riscv64 1.4.0-11ubuntu1 [56.4 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcrypt1 riscv64 1:4.4.27-1 [97.4 kB] Get:15 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 linux-libc-dev riscv64 5.15.0-22.22 [1223 kB] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libc6 riscv64 2.35-0ubuntu1 [2635 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libc-bin riscv64 2.35-0ubuntu1 [561 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcc1-0 riscv64 11.2.0-16ubuntu1 [42.0 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libctf0 riscv64 2.38-1ubuntu1 [97.9 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libctf-nobfd0 riscv64 2.38-1ubuntu1 [99.6 kB] Get:21 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.38-1ubuntu1 [927 kB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libbinutils riscv64 2.38-1ubuntu1 [492 kB] Get:23 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 binutils-common riscv64 2.38-1ubuntu1 [213 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 binutils riscv64 2.38-1ubuntu1 [3092 B] Get:25 http://ftpmaster.internal/ubuntu jammy/main riscv64 gcc-11-base riscv64 11.2.0-16ubuntu1 [20.9 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcc-s1 riscv64 11.2.0-16ubuntu1 [43.6 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgomp1 riscv64 11.2.0-16ubuntu1 [103 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main riscv64 libatomic1 riscv64 11.2.0-16ubuntu1 [7866 B] Get:29 http://ftpmaster.internal/ubuntu jammy/main riscv64 libasan6 riscv64 11.2.0-16ubuntu1 [2107 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main riscv64 g++-11 riscv64 11.2.0-16ubuntu1 [9289 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main riscv64 libstdc++-11-dev riscv64 11.2.0-16ubuntu1 [4748 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcc-11-dev riscv64 11.2.0-16ubuntu1 [2399 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main riscv64 gcc-11 riscv64 11.2.0-16ubuntu1 [15.8 MB] Get:34 http://ftpmaster.internal/ubuntu jammy/main riscv64 cpp-11 riscv64 11.2.0-16ubuntu1 [7984 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main riscv64 libstdc++6 riscv64 11.2.0-16ubuntu1 [647 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgmp10 riscv64 2:6.2.1+dfsg-3ubuntu1 [245 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main riscv64 libisl23 riscv64 0.24-2 [593 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmpc3 riscv64 1.2.1-1 [44.4 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main riscv64 libzstd1 riscv64 1.4.8+dfsg-3 [370 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main riscv64 base-files riscv64 12ubuntu2 [62.9 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main riscv64 debianutils riscv64 5.5-1ubuntu1 [105 kB] Get:42 http://ftpmaster.internal/ubuntu jammy/main riscv64 bash riscv64 5.1-6ubuntu1 [647 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main riscv64 bsdutils riscv64 1:2.37.2-4ubuntu1 [91.2 kB] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 coreutils riscv64 8.32-4.1ubuntu1 [1318 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgpg-error0 riscv64 1.43-3 [63.8 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgcrypt20 riscv64 1.9.4-3ubuntu2 [498 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main riscv64 libssl3 riscv64 3.0.1-0ubuntu1 [1449 kB] Get:48 http://ftpmaster.internal/ubuntu jammy/main riscv64 libblkid1 riscv64 2.37.2-4ubuntu1 [148 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main riscv64 libuuid1 riscv64 2.37.2-4ubuntu1 [27.0 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcryptsetup12 riscv64 2:2.4.3-1ubuntu1 [184 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main riscv64 libunistring2 riscv64 1.0-1 [540 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main riscv64 libidn2-0 riscv64 2.3.2-2 [67.5 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main riscv64 libffi8 riscv64 3.4.2-4 [20.4 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main riscv64 libp11-kit0 riscv64 0.24.0-6 [203 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtasn1-6 riscv64 4.18.0-4 [38.9 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgnutls30 riscv64 3.7.3-4ubuntu1 [870 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main riscv64 systemd-sysv riscv64 249.9-0ubuntu2 [10.5 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main riscv64 systemd-timesyncd riscv64 249.9-0ubuntu2 [28.8 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main riscv64 libacl1 riscv64 2.3.1-1 [15.3 kB] Get:60 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libapparmor1 riscv64 3.0.3-0ubuntu6 [33.6 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main riscv64 libip4tc2 riscv64 1.8.7-1ubuntu4 [18.1 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkmod2 riscv64 29-1ubuntu1 [42.1 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpcre2-8-0 riscv64 10.39-3 [136 kB] Get:64 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libselinux1 riscv64 3.3-1build1 [71.0 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmount1 riscv64 2.37.2-4ubuntu1 [156 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main riscv64 libseccomp2 riscv64 2.5.2-2ubuntu3 [46.2 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main riscv64 login riscv64 1:4.8.1-2ubuntu1 [184 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main riscv64 util-linux riscv64 2.37.2-4ubuntu1 [1122 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main riscv64 mount riscv64 2.37.2-4ubuntu1 [129 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main riscv64 systemd riscv64 249.9-0ubuntu2 [4138 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsystemd0 riscv64 249.9-0ubuntu2 [294 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main riscv64 libudev1 riscv64 249.9-0ubuntu2 [73.1 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxxhash0 riscv64 0.8.1-1 [31.9 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main riscv64 libapt-pkg6.0 riscv64 2.3.15 [917 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main riscv64 dpkg riscv64 1.21.1ubuntu1 [1214 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main riscv64 dash riscv64 0.5.11+git20210903+057cd650a4ed-3 [86.3 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main riscv64 grep riscv64 3.7-1 [151 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main riscv64 libncurses6 riscv64 6.3-2 [93.6 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main riscv64 libncursesw6 riscv64 6.3-2 [128 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtinfo6 riscv64 6.3-2 [96.1 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main riscv64 ncurses-bin riscv64 6.3-2 [176 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main riscv64 sed riscv64 4.8-1ubuntu1 [187 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main riscv64 init-system-helpers all 1.61 [39.3 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main riscv64 ncurses-base all 6.3-2 [20.1 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/main riscv64 sysvinit-utils riscv64 3.01-1ubuntu1 [20.8 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpgv riscv64 2.2.27-3ubuntu1 [195 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main riscv64 apt riscv64 2.3.15 [1348 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsepol2 riscv64 3.3-1 [254 kB] Get:89 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libsemanage-common all 3.3-1build1 [10.0 kB] Get:90 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libsemanage2 riscv64 3.3-1build1 [83.9 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main riscv64 passwd riscv64 1:4.8.1-2ubuntu1 [736 kB] Get:92 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpam-modules-bin riscv64 1.4.0-11ubuntu1 [36.9 kB] Get:93 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpam-modules riscv64 1.4.0-11ubuntu1 [265 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main riscv64 logsave riscv64 1.46.5-2ubuntu1 [10.1 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main riscv64 libext2fs2 riscv64 1.46.5-2ubuntu1 [196 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main riscv64 e2fsprogs riscv64 1.46.5-2ubuntu1 [554 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main riscv64 init riscv64 1.61 [6106 B] Get:98 http://ftpmaster.internal/ubuntu jammy/main riscv64 libattr1 riscv64 1:2.5.1-1 [12.7 kB] Get:99 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libcap-ng0 riscv64 0.7.9-2.2build3 [10.3 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcom-err2 riscv64 1.46.5-2ubuntu1 [8838 B] Get:101 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libdebconfclient0 riscv64 0.261ubuntu1 [6560 B] Get:102 http://ftpmaster.internal/ubuntu jammy/main riscv64 libk5crypto3 riscv64 1.19.2-1 [102 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkrb5support0 riscv64 1.19.2-1 [30.7 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main riscv64 libkrb5-3 riscv64 1.19.2-1 [337 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgssapi-krb5-2 riscv64 1.19.2-1 [127 kB] Get:106 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpam-runtime all 1.4.0-11ubuntu1 [40.2 kB] Get:107 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsmartcols1 riscv64 2.37.2-4ubuntu1 [102 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main riscv64 libss2 riscv64 1.46.5-2ubuntu1 [10.7 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main riscv64 mawk riscv64 1.3.4.20200120-3 [95.0 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/main riscv64 sensible-utils all 0.0.17 [20.1 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/main riscv64 usrmerge all 25ubuntu2 [54.7 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main riscv64 openssl riscv64 3.0.1-0ubuntu1 [1141 kB] Get:113 http://ftpmaster.internal/ubuntu jammy/main riscv64 ca-certificates all 20211016 [148 kB] Get:114 http://ftpmaster.internal/ubuntu jammy/main riscv64 readline-common all 8.1.2-1 [53.5 kB] Get:115 http://ftpmaster.internal/ubuntu jammy/main riscv64 libreadline8 riscv64 8.1.2-1 [130 kB] Get:116 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsqlite3-0 riscv64 3.37.2-2 [559 kB] Get:117 http://ftpmaster.internal/ubuntu jammy/main riscv64 tzdata all 2021e-1ubuntu1 [343 kB] Get:118 http://ftpmaster.internal/ubuntu jammy/main riscv64 dpkg-dev all 1.21.1ubuntu1 [922 kB] Get:119 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdpkg-perl all 1.21.1ubuntu1 [236 kB] Get:120 http://ftpmaster.internal/ubuntu jammy/main riscv64 make riscv64 4.3-4ubuntu2 [164 kB] Get:121 http://ftpmaster.internal/ubuntu jammy/main riscv64 lto-disabled-list all 19 [12.2 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfakeroot riscv64 1.27-1ubuntu1 [28.2 kB] Get:123 http://ftpmaster.internal/ubuntu jammy/main riscv64 fakeroot riscv64 1.27-1ubuntu1 [68.1 kB] Get:124 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpg riscv64 2.2.27-3ubuntu1 [488 kB] Get:125 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpgconf riscv64 2.2.27-3ubuntu1 [115 kB] Get:126 http://ftpmaster.internal/ubuntu jammy/main riscv64 gpg-agent riscv64 2.2.27-3ubuntu1 [231 kB] Get:127 http://ftpmaster.internal/ubuntu jammy/main riscv64 lockfile-progs riscv64 0.1.19 [9330 B] Get:128 http://ftpmaster.internal/ubuntu jammy/main riscv64 pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 89.0 MB in 49s (1810 kB/s) (Reading database ... 13170 files and directories currently installed.) 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Setting up init (1.61) ... Setting up libsqlite3-0:riscv64 (3.37.2-2) ... Setting up binutils-common:riscv64 (2.38-1ubuntu1) ... Setting up linux-libc-dev:riscv64 (5.15.0-22.22) ... Setting up libctf-nobfd0:riscv64 (2.38-1ubuntu1) ... Setting up libgomp1:riscv64 (11.2.0-16ubuntu1) ... Setting up perl-modules-5.34 (5.34.0-3ubuntu1) ... Setting up bzip2 (1.0.8-5) ... Setting up libfakeroot:riscv64 (1.27-1ubuntu1) ... Setting up libasan6:riscv64 (11.2.0-16ubuntu1) ... Setting up tzdata (2021e-1ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Feb 13 17:33:53 UTC 2022. Universal Time is now: Sun Feb 13 17:33:53 UTC 2022. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.27-1ubuntu1) ... Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:riscv64 (6.3-2) ... Setting up libmpc3:riscv64 (1.2.1-1) ... Setting up systemd-timesyncd (249.9-0ubuntu2) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:riscv64 (11.2.0-16ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libss2:riscv64 (1.46.5-2ubuntu1) ... Setting up libncursesw6:riscv64 (6.3-2) ... Setting up logsave (1.46.5-2ubuntu1) ... Setting up libgcc-11-dev:riscv64 (11.2.0-16ubuntu1) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:riscv64 (1:4.4.27-1) ... Setting up mawk (1.3.4.20200120-3) ... Setting up libbinutils:riscv64 (2.38-1ubuntu1) ... Setting up libisl23:riscv64 (0.24-2) ... Setting up libc-dev-bin (2.35-0ubuntu1) ... Setting up openssl (3.0.1-0ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.1.2-1) ... Setting up libcc1-0:riscv64 (11.2.0-16ubuntu1) ... Setting up libgdbm6:riscv64 (1.23-1) ... Setting up libctf0:riscv64 (2.38-1ubuntu1) ... Setting up cpp-11 (11.2.0-16ubuntu1) ... Setting up pkgbinarymangler (149) ... Setting up libreadline8:riscv64 (8.1.2-1) ... Setting up binutils-riscv64-linux-gnu (2.38-1ubuntu1) ... Setting up e2fsprogs (1.46.5-2ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up binutils (2.38-1ubuntu1) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up libgdbm-compat4:riscv64 (1.23-1) ... Setting up gcc-11 (11.2.0-16ubuntu1) ... Setting up gpgconf (2.2.27-3ubuntu1) ... Setting up libc6-dev:riscv64 (2.35-0ubuntu1) ... Setting up gpg (2.2.27-3ubuntu1) ... Setting up libperl5.34:riscv64 (5.34.0-3ubuntu1) ... Setting up gpg-agent (2.2.27-3ubuntu1) ... Setting up perl (5.34.0-3ubuntu1) ... Setting up libdpkg-perl (1.21.1ubuntu1) ... Setting up libstdc++-11-dev:riscv64 (11.2.0-16ubuntu1) ... Setting up g++-11 (11.2.0-16ubuntu1) ... Setting up dpkg-dev (1.21.1ubuntu1) ... Processing triggers for libc-bin (2.35-0ubuntu1) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-23162310 riscv64 jammy-proposed -c chroot:build-PACKAGEBUILD-23162310 --arch=riscv64 --dist=jammy-proposed --nolog cctbx_2021.12+ds1-2.dsc Initiating build PACKAGEBUILD-23162310 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.11.0-1026-generic #28~20.04.1-Ubuntu SMP Fri Jan 7 12:35:22 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-074.buildd +==============================================================================+ | cctbx 2021.12+ds1-2 (riscv64) Sun, 13 Feb 2022 17:36:34 +0000 | +==============================================================================+ Package: cctbx Version: 2021.12+ds1-2 Source Version: 2021.12+ds1-2 Distribution: jammy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-23162310/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/cctbx-mkMOWM/resolver-Ojymm0' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- cctbx_2021.12+ds1-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/cctbx-mkMOWM/cctbx-2021.12+ds1' with '<>' I: NOTICE: Log filtering will replace 'build/cctbx-mkMOWM' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, jq, python3-all-dev:any, scons, liblz4-dev, libexpat1-dev, libfftw3-dev, libcbf-dev, libann-dev, libclipper-dev, libantlr3c-dev, libboost-dev, libboost-python-dev, libboost-thread-dev, libboost-numpy-dev, libtool, libeigen3-dev, python3-numpy, python3-setuptools, python3-matplotlib, python3-biopython, python3-psutil, python3-msgpack, python3-six, python3-future, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, jq, python3-all-dev:any, scons, liblz4-dev, libexpat1-dev, libfftw3-dev, libcbf-dev, libann-dev, libclipper-dev, libantlr3c-dev, libboost-dev, libboost-python-dev, libboost-thread-dev, libboost-numpy-dev, libtool, libeigen3-dev, python3-numpy, python3-setuptools, python3-matplotlib, python3-biopython, python3-psutil, python3-msgpack, python3-six, python3-future, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [521 B] Get:5 copy:/<>/apt_archive ./ Packages [604 B] Fetched 2088 B in 1s (2776 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.32 libssl1.1 perl-modules-5.32 systemd-timesyncd Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fftw-dev fftw2 file fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 gettext gettext-base groff-base hdf5-helpers intltool-debian jq libaec-dev libaec0 libann-dev libann0 libantlr3c-3.4-0 libantlr3c-dev libarchive-zip-perl libblas3 libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-numpy-dev libboost-numpy1.74-dev libboost-numpy1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system1.74-dev libboost-system1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libcbf-dev libcbf1 libccp4-data libccp4-dev libccp4c0 libccp4f0 libclipper-dev libclipper2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl libdeflate0 libdw1 libedit2 libeigen3-dev libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwloc-plugins libhwloc15 libibverbs1 libicu70 libimagequant0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblz4-dev libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev libmpdec3 libnghttp2-14 libnl-3-200 libnl-route-3-200 libonig5 libopenjp2-7 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libsub-override-perl libsz2 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 m4 man-db media-types ocl-icd-libopencl1 pkg-config po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-future python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-msgpack python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-psutil python3-pyparsing python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal scons sfftw-dev sfftw2 tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc blt-demo dh-make flit python3-build python3-tomli python3-installer mpi-defaults-bin fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff libboost-doc libboost1.74-doc gccxml libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-program-options1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libclipper-doc libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev libeigen3-doc libfftw3-doc libhdf5-doc libjs-jquery-ui-docs liblcms2-utils pciutils libssl-doc tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd libmail-box-perl python3-doc python3-venv python-attr-doc bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle phylip phyml prank probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools t-coffee wise w3-dtd-mathml python-cycler-doc python-future-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-pytest python-pil-doc python-psutil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc python-scipy-doc python-setuptools-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.10-venv python3.10-doc binfmt-support python3.9-venv python3.9-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs ibverbs-providers javascript-common libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-bs4 python3-html5lib python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev blt bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-python dh-strip-nondeterminism dwz fftw-dev fftw2 file fontconfig-config fonts-dejavu-core fonts-lyx fonts-urw-base35 gettext gettext-base groff-base hdf5-helpers intltool-debian jq libaec-dev libaec0 libann-dev libann0 libantlr3c-3.4-0 libantlr3c-dev libarchive-zip-perl libblas3 libboost-atomic1.74-dev libboost-atomic1.74.0 libboost-chrono1.74-dev libboost-chrono1.74.0 libboost-date-time1.74-dev libboost-date-time1.74.0 libboost-dev libboost-numpy-dev libboost-numpy1.74-dev libboost-numpy1.74.0 libboost-python-dev libboost-python1.74-dev libboost-python1.74.0 libboost-serialization1.74-dev libboost-serialization1.74.0 libboost-system1.74-dev libboost-system1.74.0 libboost-thread-dev libboost-thread1.74-dev libboost-thread1.74.0 libboost1.74-dev libbrotli1 libbsd0 libcbf-dev libcbf1 libccp4-data libccp4-dev libccp4c0 libccp4f0 libclipper-dev libclipper2 libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdebhelper-perl libdeflate0 libdw1 libedit2 libeigen3-dev libelf1 libevent-core-2.1-7 libevent-pthreads-2.1-7 libexpat1 libexpat1-dev libfabric1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwloc-plugins libhwloc15 libibverbs1 libicu70 libimagequant0 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjq1 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblz4-dev libmagic-mgc libmagic1 libmd0 libmmdb2-0 libmmdb2-dev libmpdec3 libnghttp2-14 libnl-3-200 libnl-route-3-200 libonig5 libopenjp2-7 libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.10 libpython3.10-dev libpython3.10-minimal libpython3.10-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib libqhull-r8.0 libraqm0 librdmacm1 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libssl-dev libsub-override-perl libsz2 libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxnvctrl0 libxrender1 libxslt1.1 libxss1 m4 man-db media-types ocl-icd-libopencl1 pkg-config po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-appdirs python3-attr python3-biopython python3-brotli python3-cycler python3-dateutil python3-decorator python3-dev python3-distutils python3-fonttools python3-fs python3-future python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4 python3-matplotlib python3-minimal python3-mpmath python3-msgpack python3-numpy python3-packaging python3-pil python3-pil.imagetk python3-pkg-resources python3-psutil python3-pyparsing python3-renderpm python3-reportlab python3-reportlab-accel python3-scipy python3-setuptools python3-six python3-sympy python3-tk python3-tz python3-ufolib2 python3.10 python3.10-dev python3.10-minimal python3.9 python3.9-dev python3.9-minimal sbuild-build-depends-main-dummy scons sfftw-dev sfftw2 tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev 0 upgraded, 240 newly installed, 0 to remove and 0 not upgraded. Need to get 172 MB of archives. After this operation, 985 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [826 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpython3.10-minimal riscv64 3.10.2-1 [792 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main riscv64 libexpat1 riscv64 2.4.4-1 [83.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3.10-minimal riscv64 3.10.2-1 [1731 kB] Get:5 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-minimal riscv64 3.10.1-0ubuntu1 [24.7 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main riscv64 media-types all 5.0.0 [25.5 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmd0 riscv64 1.0.4-1 [30.0 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main riscv64 libbsd0 riscv64 0.11.5-1 [40.9 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main riscv64 libedit2 riscv64 3.1-20210910-1 [81.8 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmpdec3 riscv64 2.5.1-2build1 [84.9 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpython3.10-stdlib riscv64 3.10.2-1 [1715 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3.10 riscv64 3.10.2-1 [482 kB] Get:13 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpython3-stdlib riscv64 3.10.1-0ubuntu1 [7316 B] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3 riscv64 3.10.1-0ubuntu1 [22.8 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpython3.9-minimal riscv64 3.9.10-1 [775 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3.9-minimal riscv64 3.9.10-1 [1697 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main riscv64 libelf1 riscv64 0.186-1 [46.6 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfribidi0 riscv64 1.0.8-2ubuntu2 [25.3 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main riscv64 libglib2.0-0 riscv64 2.71.1-1 [1302 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpython3.9-stdlib riscv64 3.9.10-1 [1700 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main riscv64 libicu70 riscv64 70.1-2 [10.5 MB] Get:22 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libxml2 riscv64 2.9.12+dfsg-5build1 [605 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-pkg-resources all 59.6.0-1.2 [132 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3.9 riscv64 3.9.10-1 [440 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main riscv64 ucf all 3.0043 [56.1 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main riscv64 bsdextrautils riscv64 2.37.2-4ubuntu1 [81.4 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmagic-mgc riscv64 1:5.41-2 [257 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main riscv64 libmagic1 riscv64 1:5.41-2 [88.6 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main riscv64 file riscv64 1:5.41-2 [20.5 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main riscv64 gettext-base riscv64 0.21-4ubuntu3 [37.2 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main riscv64 libuchardet0 riscv64 0.0.7-1build1 [78.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main riscv64 groff-base riscv64 1.22.4-8 [922 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpipeline1 riscv64 1.5.5-1 [26.2 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpsl5 riscv64 0.21.0-1.2build1 [56.4 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxau6 riscv64 1:1.0.9-1build4 [6784 B] Get:36 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu4 [10.4 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxcb1 riscv64 1.14-3ubuntu2 [42.6 kB] Get:38 http://ftpmaster.internal/ubuntu jammy/main riscv64 libx11-data all 2:1.7.2-2 [123 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main riscv64 libx11-6 riscv64 2:1.7.2-2 [619 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxext6 riscv64 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Get:51 http://ftpmaster.internal/ubuntu jammy/main riscv64 fonts-dejavu-core all 2.37-2build1 [1041 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main riscv64 fonts-urw-base35 all 20200910-1 [6367 kB] Get:53 http://ftpmaster.internal/ubuntu jammy/main riscv64 fontconfig-config all 2.13.1-4.2ubuntu4 [29.1 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfontconfig1 riscv64 2.13.1-4.2ubuntu4 [116 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxrender1 riscv64 1:0.9.10-1build3 [17.2 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxft2 riscv64 2.3.3-0ubuntu4 [36.7 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main riscv64 x11-common all 1:7.7+23ubuntu1 [23.5 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxss1 riscv64 1:1.2.3-1build1 [7654 B] Get:59 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtk8.6 riscv64 8.6.12-1 [701 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main riscv64 tk8.6-blt2.5 riscv64 2.5.3+dfsg-4.1build1 [549 kB] Get:61 http://ftpmaster.internal/ubuntu jammy/main riscv64 blt riscv64 2.5.3+dfsg-4.1build1 [4846 B] Get:62 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main riscv64 libtool all 2.4.6-15build1 [164 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:67 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfile-stripnondeterminism-perl all 1.13.0-1 [18.1 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-strip-nondeterminism all 1.13.0-1 [5344 B] Get:69 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdw1 riscv64 0.186-1 [228 kB] Get:70 http://ftpmaster.internal/ubuntu jammy/main riscv64 debugedit riscv64 1:5.0-4 [49.8 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main riscv64 dwz riscv64 0.14-1build1 [105 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main riscv64 gettext riscv64 0.21-4ubuntu3 [769 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:75 http://ftpmaster.internal/ubuntu jammy/main riscv64 debhelper all 13.5.2ubuntu1 [926 kB] Get:76 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-lib2to3 all 3.9.10-1 [77.4 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-distutils all 3.9.10-1 [144 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/universe riscv64 dh-python all 5.20220119 [103 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main riscv64 libevent-core-2.1-7 riscv64 2.1.12-stable-1build2 [79.9 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main riscv64 libevent-pthreads-2.1-7 riscv64 2.1.12-stable-1build2 [7102 B] Get:81 http://ftpmaster.internal/ubuntu jammy/main riscv64 libnl-3-200 riscv64 3.5.0-0.1 [50.4 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main riscv64 libnl-route-3-200 riscv64 3.5.0-0.1 [158 kB] Get:83 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libibverbs1 riscv64 39.0-1 [58.7 kB] Get:84 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 librdmacm1 riscv64 39.0-1 [65.2 kB] Get:85 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libfabric1 riscv64 1.11.0-3 [333 kB] Get:86 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhwloc15 riscv64 2.7.0-2 [137 kB] Get:87 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsasl2-modules-db riscv64 2.1.27+dfsg2-3 [19.4 kB] Get:88 http://ftpmaster.internal/ubuntu jammy/main riscv64 libsasl2-2 riscv64 2.1.27+dfsg2-3 [53.3 kB] Get:89 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libldap-2.5-0 riscv64 2.5.11+dfsg-1~exp1ubuntu2 [165 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main riscv64 libnghttp2-14 riscv64 1.43.0-1build2 [73.3 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-2build3 [54.7 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main riscv64 libssh-4 riscv64 0.9.6-2 [162 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcurl3-gnutls riscv64 7.81.0-1 [249 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpciaccess0 riscv64 0.16-3 [16.8 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxnvctrl0 riscv64 470.57.01-0ubuntu4 [11.0 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/universe riscv64 ocl-icd-libopencl1 riscv64 2.2.14-3 [34.3 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhwloc-plugins riscv64 2.7.0-2 [13.8 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libpmix2 riscv64 4.1.1~rc6-1ubuntu1 [562 kB] Get:99 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kB] Get:109 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libann-dev riscv64 1.1.2+doc-7build1 [392 kB] Get:110 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libantlr3c-3.4-0 riscv64 3.4+dfsg-4build1 [34.2 kB] Get:111 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libantlr3c-dev riscv64 3.4+dfsg-4build1 [172 kB] Get:112 http://ftpmaster.internal/ubuntu jammy/main riscv64 libblas3 riscv64 3.10.0-2ubuntu1 [123 kB] Get:113 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost1.74-dev riscv64 1.74.0-14ubuntu2 [9607 kB] Get:114 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-atomic1.74.0 riscv64 1.74.0-14ubuntu2 [224 kB] Get:115 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-atomic1.74-dev riscv64 1.74.0-14ubuntu2 [229 kB] Get:116 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-chrono1.74.0 riscv64 1.74.0-14ubuntu2 [232 kB] Get:117 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-chrono1.74-dev riscv64 1.74.0-14ubuntu2 [300 kB] Get:118 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-date-time1.74.0 riscv64 1.74.0-14ubuntu2 [220 kB] Get:119 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-serialization1.74.0 riscv64 1.74.0-14ubuntu2 [332 kB] Get:120 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-serialization1.74-dev riscv64 1.74.0-14ubuntu2 [854 kB] Get:121 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-date-time1.74-dev riscv64 1.74.0-14ubuntu2 [226 kB] Get:122 http://ftpmaster.internal/ubuntu jammy/main riscv64 libboost-dev riscv64 1.74.0.3ubuntu6 [3456 B] Get:123 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libboost-python1.74.0 riscv64 1.74.0-14ubuntu2 [312 kB] Get:124 http://ftpmaster.internal/ubuntu jammy-proposed/universe riscv64 libboost-numpy1.74.0 riscv64 1.74.0-14ubuntu2 [229 kB] Get:125 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riscv64 libboost-thread1.74-dev riscv64 1.74.0-14ubuntu2 [418 kB] Get:143 http://ftpmaster.internal/ubuntu jammy/main riscv64 libboost-thread-dev riscv64 1.74.0.3ubuntu6 [3226 B] Get:144 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcurl4 riscv64 7.81.0-1 [256 kB] Get:145 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libsz2 riscv64 1.0.6-1 [4734 B] Get:146 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhdf5-103-1 riscv64 1.10.7+repack-4ubuntu2 [1215 kB] Get:147 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libcbf1 riscv64 0.9.6+dfsg1-3 [315 kB] Get:148 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libccp4-data all 6.5.1-5 [61.6 kB] Get:149 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libccp4c0 riscv64 6.5.1-5 [81.4 kB] Get:150 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgfortran5 riscv64 11.2.0-16ubuntu1 [376 kB] Get:151 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libmmdb2-0 riscv64 2.0.20-1 [361 kB] Get:152 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libccp4f0 riscv64 6.5.1-5 [210 kB] Get:153 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libccp4-dev riscv64 6.5.1-5 [41.5 kB] Get:154 http://ftpmaster.internal/ubuntu jammy/universe riscv64 sfftw2 riscv64 2.1.5-6 [180 kB] Get:155 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libclipper2 riscv64 2.1.20201109-1 [1127 kB] Get:156 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libmmdb2-dev riscv64 2.0.20-1 [93.1 kB] Get:157 http://ftpmaster.internal/ubuntu jammy/universe riscv64 sfftw-dev riscv64 2.1.5-6 [256 kB] Get:158 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libclipper-dev riscv64 2.1.20201109-1 [75.4 kB] Get:159 http://ftpmaster.internal/ubuntu jammy/main riscv64 libcurl4-openssl-dev riscv64 7.81.0-1 [856 kB] Get:160 http://ftpmaster.internal/ubuntu jammy/main riscv64 libdeflate0 riscv64 1.8-1ubuntu1 [51.1 kB] Get:161 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfftw3-double3 riscv64 3.3.8-2ubuntu7 [470 kB] Get:162 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfftw3-long3 riscv64 3.3.8-2ubuntu7 [747 kB] Get:163 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfftw3-single3 riscv64 3.3.8-2ubuntu7 [461 kB] Get:164 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfftw3-bin riscv64 3.3.8-2ubuntu7 [26.6 kB] Get:165 http://ftpmaster.internal/ubuntu jammy/main riscv64 libfftw3-dev riscv64 3.3.8-2ubuntu7 [5265 kB] Get:166 http://ftpmaster.internal/ubuntu jammy/main riscv64 libgraphite2-3 riscv64 1.3.14-1build1 [71.5 kB] Get:167 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libharfbuzz0b riscv64 2.7.4-1ubuntu3 [369 kB] Get:168 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhdf5-cpp-103-1 riscv64 1.10.7+repack-4ubuntu2 [124 kB] Get:169 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhdf5-fortran-102 riscv64 1.10.7+repack-4ubuntu2 [77.5 kB] Get:170 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhdf5-hl-100 riscv64 1.10.7+repack-4ubuntu2 [52.7 kB] Get:171 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhdf5-hl-fortran-100 riscv64 1.10.7+repack-4ubuntu2 [28.1 kB] Get:172 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhdf5-hl-cpp-100 riscv64 1.10.7+repack-4ubuntu2 [10.4 kB] Get:173 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg-turbo8 riscv64 2.1.1-0ubuntu1 [113 kB] Get:174 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg-turbo8-dev riscv64 2.1.1-0ubuntu1 [437 kB] Get:175 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg8 riscv64 8c-2ubuntu8 [2224 B] Get:176 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg8-dev riscv64 8c-2ubuntu8 [1692 B] Get:177 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjpeg-dev riscv64 8c-2ubuntu8 [1688 B] Get:178 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libaec-dev riscv64 1.0.6-1 [44.2 kB] Get:179 http://ftpmaster.internal/ubuntu jammy/main riscv64 libssl-dev riscv64 3.0.1-0ubuntu1 [4536 kB] Get:180 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libhdf5-dev riscv64 1.10.7+repack-4ubuntu2 [6311 kB] Get:181 http://ftpmaster.internal/ubuntu jammy/main riscv64 libimagequant0 riscv64 2.17.0-1 [32.1 kB] Get:182 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libjs-jquery-ui all 1.13.0+dfsg-1 [253 kB] Get:183 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblapack3 riscv64 3.10.0-2ubuntu1 [1902 kB] Get:184 http://ftpmaster.internal/ubuntu jammy/universe riscv64 liblbfgsb0 riscv64 3.0+dfsg.3-10 [26.4 kB] Get:185 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblcms2-2 riscv64 2.12~rc1-2build1 [143 kB] Get:186 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpython3.9 riscv64 3.9.10-1 [1721 kB] Get:187 http://ftpmaster.internal/ubuntu jammy/main riscv64 libpython3.9-dev riscv64 3.9.10-1 [12.4 MB] Get:188 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libpython3-all-dev riscv64 3.10.1-0ubuntu1 [924 B] Get:189 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libqhull-r8.0 riscv64 2020.2-4 [182 kB] Get:190 http://ftpmaster.internal/ubuntu jammy/main riscv64 libraqm0 riscv64 0.7.0-4ubuntu1 [10.4 kB] Get:191 http://ftpmaster.internal/ubuntu jammy/main riscv64 libjbig0 riscv64 2.1-3.1build2 [27.4 kB] Get:192 http://ftpmaster.internal/ubuntu jammy/main riscv64 libwebp7 riscv64 1.2.1-6 [162 kB] Get:193 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 libtiff5 riscv64 4.3.0-4 [165 kB] Get:194 http://ftpmaster.internal/ubuntu jammy/main riscv64 libwebpdemux2 riscv64 1.2.1-6 [9046 B] Get:195 http://ftpmaster.internal/ubuntu jammy/main riscv64 libwebpmux3 riscv64 1.2.1-6 [18.2 kB] Get:196 http://ftpmaster.internal/ubuntu jammy/main riscv64 libxslt1.1 riscv64 1.1.34-4build1 [146 kB] Get:197 http://ftpmaster.internal/ubuntu jammy/main riscv64 pkg-config riscv64 0.29.2-1ubuntu2 [46.1 kB] Get:198 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python-matplotlib-data all 3.5.1-2 [2942 kB] Get:199 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-all riscv64 3.10.1-0ubuntu1 [924 B] Get:200 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3.9-dev riscv64 3.9.10-1 [500 kB] Get:201 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-all-dev riscv64 3.10.1-0ubuntu1 [928 B] Get:202 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-appdirs all 1.4.4-2 [11.4 kB] Get:203 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-attr all 21.2.0-1 [44.0 kB] Get:204 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-numpy riscv64 1:1.21.5-1 [3444 kB] Get:205 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-renderpm riscv64 3.6.5-1 [56.5 kB] Get:206 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-reportlab-accel riscv64 3.6.5-1 [18.7 kB] Get:207 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-tk riscv64 3.9.10-1 [107 kB] Get:208 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-pil.imagetk riscv64 9.0.0-1build1 [9022 B] Get:209 http://ftpmaster.internal/ubuntu jammy/main riscv64 libopenjp2-7 riscv64 2.4.0-6 [159 kB] Get:210 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-pil riscv64 9.0.0-1build1 [420 kB] Get:211 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-reportlab all 3.6.5-1 [560 kB] Get:212 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-biopython riscv64 1.79+dfsg-1 [1449 kB] Get:213 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-brotli riscv64 1.0.9-2build4 [332 kB] Get:214 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-cycler all 0.11.0-1 [8156 B] Get:215 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-six all 1.16.0-3 [12.5 kB] Get:216 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-dateutil all 2.8.1-6 [78.4 kB] Get:217 http://ftpmaster.internal/ubuntu jammy/main 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Get:227 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-fonttools riscv64 4.29.1-1 [821 kB] Get:228 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-future all 0.18.2-5 [336 kB] Get:229 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-kiwisolver riscv64 1.3.2-1 [72.5 kB] Get:230 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-pyparsing all 2.4.7-1 [61.4 kB] Get:231 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-packaging all 21.3-1 [30.7 kB] Get:232 http://ftpmaster.internal/ubuntu jammy/universe riscv64 python3-matplotlib riscv64 3.5.1-2 [6369 kB] Get:233 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-msgpack riscv64 1.0.2-2 [81.7 kB] Get:234 http://ftpmaster.internal/ubuntu jammy-proposed/main riscv64 python3-psutil riscv64 5.9.0-1 [156 kB] Get:235 http://ftpmaster.internal/ubuntu jammy/main riscv64 python3-setuptools all 59.6.0-1.2 [339 kB] Get:236 http://ftpmaster.internal/ubuntu jammy/universe riscv64 scons all 4.0.1+dfsg-2 [469 kB] Get:237 http://ftpmaster.internal/ubuntu jammy/main riscv64 dh-exec riscv64 0.23.4build1 [24.3 kB] Get:238 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libcbf-dev riscv64 0.9.6+dfsg1-3 [1331 kB] Get:239 http://ftpmaster.internal/ubuntu jammy/universe riscv64 libeigen3-dev all 3.4.0-2ubuntu2 [1056 kB] Get:240 http://ftpmaster.internal/ubuntu jammy/main riscv64 liblz4-dev riscv64 1.9.3-2build1 [366 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 172 MB in 50s (3446 kB/s) Selecting previously unselected package libpython3.10-minimal:riscv64. (Reading database ... 15281 files and directories currently installed.) Preparing to unpack .../libpython3.10-minimal_3.10.2-1_riscv64.deb ... Unpacking libpython3.10-minimal:riscv64 (3.10.2-1) ... Selecting previously unselected package libexpat1:riscv64. Preparing to unpack .../libexpat1_2.4.4-1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.4.4-1) ... Selecting previously unselected package python3.10-minimal. Preparing to unpack .../python3.10-minimal_3.10.2-1_riscv64.deb ... Unpacking python3.10-minimal (3.10.2-1) ... Setting up libpython3.10-minimal:riscv64 (3.10.2-1) ... Setting up libexpat1:riscv64 (2.4.4-1) ... Setting up python3.10-minimal (3.10.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 15583 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.10.1-0ubuntu1_riscv64.deb ... Unpacking python3-minimal (3.10.1-0ubuntu1) ... Selecting previously unselected package media-types. 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Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../227-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libboost-chrono1.74.0:riscv64 (1.74.0-14ubuntu2) ... Setting up media-types (5.0.0) ... Setting up libpipeline1:riscv64 (1.5.5-1) ... Setting up libboost-system1.74.0:riscv64 (1.74.0-14ubuntu2) ... Setting up libgraphite2-3:riscv64 (1.3.14-1build1) ... Setting up liblcms2-2:riscv64 (2.12~rc1-2build1) ... Setting up libpciaccess0:riscv64 (0.16-3) ... Setting up libxau6:riscv64 (1:1.0.9-1build4) ... Setting up libpsl5:riscv64 (0.21.0-1.2build1) ... Setting up libboost1.74-dev:riscv64 (1.74.0-14ubuntu2) ... Setting up libfftw3-single3:riscv64 (3.3.8-2ubuntu7) ... Setting up libboost-atomic1.74.0:riscv64 (1.74.0-14ubuntu2) ... Setting up libantlr3c-3.4-0:riscv64 (3.4+dfsg-4build1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.7+repack-4ubuntu2) ... Setting up libantlr3c-dev (3.4+dfsg-4build1) ... Setting up libmmdb2-0:riscv64 (2.0.20-1) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:riscv64 (2.71.1-1) ... No schema files found: doing nothing. Setting up libpython3.9-minimal:riscv64 (3.9.10-1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libbrotli1:riscv64 (1.0.9-2build4) ... Setting up libboost-chrono1.74-dev:riscv64 (1.74.0-14ubuntu2) ... Setting up x11-common (1:7.7+23ubuntu1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libnghttp2-14:riscv64 (1.43.0-1build2) ... Setting up libmagic1:riscv64 (1:5.41-2) ... Setting up libdeflate0:riscv64 (1.8-1ubuntu1) ... 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Setting up liblapack3:riscv64 (3.10.0-2ubuntu1) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up libxcb1:riscv64 (1.14-3ubuntu2) ... Setting up libccp4-dev:riscv64 (6.5.1-5) ... Setting up libtool (2.4.6-15build1) ... Setting up libfftw3-bin (3.3.8-2ubuntu7) ... Setting up libjq1:riscv64 (1.6-2.1ubuntu2) ... Setting up fontconfig-config (2.13.1-4.2ubuntu4) ... Setting up libwebpdemux2:riscv64 (1.2.1-6) ... Setting up libedit2:riscv64 (3.1-20210910-1) ... Setting up libaec-dev:riscv64 (1.0.6-1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up libldap-2.5-0:riscv64 (2.5.11+dfsg-1~exp1ubuntu2) ... Setting up libnl-route-3-200:riscv64 (3.5.0-0.1) ... Setting up libann-dev (1.1.2+doc-7build1) ... Setting up libpython3.10-stdlib:riscv64 (3.10.2-1) ... Setting up libpython3.9:riscv64 (3.9.10-1) ... Setting up libjs-jquery-ui (1.13.0+dfsg-1) ... 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Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpython3.10:riscv64 (3.10.2-1) ... Setting up libibverbs1:riscv64 (39.0-1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up python3.10 (3.10.2-1) ... Setting up libxrender1:riscv64 (1:0.9.10-1build3) ... Setting up libjpeg-dev:riscv64 (8c-2ubuntu8) ... Setting up libxext6:riscv64 (2:1.3.4-1) ... Setting up libpython3.9-dev:riscv64 (3.9.10-1) ... Setting up libcurl3-gnutls:riscv64 (7.81.0-1) ... Setting up python3 (3.10.1-0ubuntu1) ... Setting up man-db (2.10.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up python3-psutil (5.9.0-1) ... Setting up python3-tz (2021.3-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxnvctrl0:riscv64 (470.57.01-0ubuntu4) ... 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Setting up libfabric1:riscv64 (1.11.0-3) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1build1) ... Setting up python3-scipy (1.7.1-1ubuntu1) ... Setting up libpmix2:riscv64 (4.1.1~rc6-1ubuntu1) ... Setting up libopenmpi3:riscv64 (4.1.2-1ubuntu1) ... Setting up blt (2.5.3+dfsg-4.1build1) ... Setting up sfftw2 (2.1.5-6) ... Setting up python3-tk:riscv64 (3.9.10-1) ... Setting up libboost-python1.74-dev (1.74.0-14ubuntu2) ... Setting up libboost-python-dev (1.74.0.3ubuntu6) ... Setting up fftw2 (2.1.5-6) ... Setting up libhdf5-dev (1.10.7+repack-4ubuntu2) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/riscv64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up sfftw-dev (2.1.5-6) ... Setting up libclipper2:riscv64 (2.1.20201109-1) ... Setting up fftw-dev (2.1.5-6) ... Setting up libclipper-dev:riscv64 (2.1.20201109-1) ... Setting up libcbf-dev:riscv64 (0.9.6+dfsg1-3) ... Setting up python3-fonttools (4.29.1-1) ... 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Processing triggers for libc-bin (2.35-0ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.11.0-1026-generic #28~20.04.1-Ubuntu SMP Fri Jan 7 12:35:22 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.38-1ubuntu1 dpkg-dev_1.21.1ubuntu1 g++-11_11.2.0-16ubuntu1 gcc-11_11.2.0-16ubuntu1 libc6-dev_2.35-0ubuntu1 libstdc++-11-dev_11.2.0-16ubuntu1 libstdc++6_11.2.0-16ubuntu1 linux-libc-dev_5.15.0-22.22 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.15 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20220109.1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-6ubuntu1 binutils_2.38-1ubuntu1 binutils-common_2.38-1ubuntu1 binutils-riscv64-linux-gnu_2.38-1ubuntu1 blt_2.5.3+dfsg-4.1build1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1ubuntu1 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-16ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.5.2ubuntu1 debianutils_5.5-1ubuntu1 debugedit_1:5.0-4 dh-autoreconf_20 dh-exec_0.23.4build1 dh-python_5.20220119 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.21.1ubuntu1 dpkg-dev_1.21.1ubuntu1 dwz_0.14-1build1 e2fsprogs_1.46.5-2ubuntu1 fakeroot_1.27-1ubuntu1 fftw-dev_2.1.5-6 fftw2_2.1.5-6 file_1:5.41-2 findutils_4.8.0-1ubuntu2 fontconfig-config_2.13.1-4.2ubuntu4 fonts-dejavu-core_2.37-2build1 fonts-lyx_2.3.6-1 fonts-urw-base35_20200910-1 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-16ubuntu1 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-16ubuntu1 gcc-11-base_11.2.0-16ubuntu1 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.27-3ubuntu1 gpg-agent_2.2.27-3ubuntu1 gpgconf_2.2.27-3ubuntu1 gpgv_2.2.27-3ubuntu1 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4ubuntu2 hdf5-helpers_1.10.7+repack-4ubuntu2 hostname_3.23ubuntu1 init_1.61 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 jq_1.6-2.1ubuntu2 libacl1_2.3.1-1 libaec-dev_1.0.6-1 libaec0_1.0.6-1 libann-dev_1.1.2+doc-7build1 libann0_1.1.2+doc-7build1 libantlr3c-3.4-0_3.4+dfsg-4build1 libantlr3c-dev_3.4+dfsg-4build1 libapparmor1_3.0.3-0ubuntu6 libapt-pkg6.0_2.3.15 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-16ubuntu1 libassuan0_2.5.5-1 libatomic1_11.2.0-16ubuntu1 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.38-1ubuntu1 libblas3_3.10.0-2ubuntu1 libblkid1_2.37.2-4ubuntu1 libboost-atomic1.74-dev_1.74.0-14ubuntu2 libboost-atomic1.74.0_1.74.0-14ubuntu2 libboost-chrono1.74-dev_1.74.0-14ubuntu2 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MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: cctbx Binary: libcctbx0, libcctbx-dev, python3-cctbx Architecture: any Version: 2021.12+ds1-2 Maintainer: Debian Science Maintainers Uploaders: Neil Williams , Picca Frédéric-Emmanuel , Radostan Riedel , Homepage: https://github.com/cctbx/cctbx_project Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/science-team/cctbx Vcs-Git: https://salsa.debian.org/science-team/cctbx.git Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, jq, python3-all-dev:any, scons, liblz4-dev, libexpat1-dev, libfftw3-dev, libcbf-dev, libann-dev, libclipper-dev, libantlr3c-dev, libboost-dev, libboost-python-dev, libboost-thread-dev, libboost-numpy-dev, libtool, libeigen3-dev, python3-numpy, python3-setuptools, python3-matplotlib, python3-biopython, python3-psutil, python3-msgpack, python3-six, python3-future Package-List: libcctbx-dev deb devel optional arch=any libcctbx0 deb libs optional arch=any python3-cctbx deb python optional 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adding-setup_py.patch dpkg-source: info: applying system_libs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-23162310 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-23162310 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-23162310 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2021.12+ds1-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean W: pybuild base:266: missing command (plugin=custom, method=clean, interpreter=python3.9, version=3.9) W: pybuild base:266: missing command (plugin=custom, method=clean, interpreter=python3.10, version=3.10) rm -f -r /<>/build find . -name __pycache__ -type d -exec rm -rf {} \; make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild W: pybuild base:266: missing command (plugin=custom, method=configure, interpreter=python3.9, version=3.9) W: pybuild base:266: missing command (plugin=custom, method=configure, interpreter=python3.10, version=3.10) debian/rules override_dh_auto_build make[1]: Entering directory '/<>' python3 setup.py build /<>/setup.py:1: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension No entry for terminal type "unknown"; using dumb terminal settings. running build running build_py file cctbx/stdlib.py (for module stdlib) not found creating build creating build/lib.linux-riscv64-3.10 creating build/lib.linux-riscv64-3.10/boost copying with modification boost_adaptbx/boost/__init__.py -> build/lib.linux-riscv64-3.10/boost/__init__.py copying with modification boost_adaptbx/boost/optional.py -> build/lib.linux-riscv64-3.10/boost/optional.py copying with modification boost_adaptbx/boost/rational.py -> build/lib.linux-riscv64-3.10/boost/rational.py copying with modification boost_adaptbx/boost/std_pair.py -> build/lib.linux-riscv64-3.10/boost/std_pair.py copying with modification boost_adaptbx/boost/tuple.py -> build/lib.linux-riscv64-3.10/boost/tuple.py copying with modification boost_adaptbx/boost/python.py -> build/lib.linux-riscv64-3.10/boost/python.py creating build/lib.linux-riscv64-3.10/clipper copying with modification clipper_adaptbx/clipper/__init__.py -> build/lib.linux-riscv64-3.10/clipper/__init__.py copying with modification clipper_adaptbx/clipper/tst_sigmaa.py -> build/lib.linux-riscv64-3.10/clipper/tst_sigmaa.py copying with modification clipper_adaptbx/clipper/tst_hendrickson_lattman.py -> build/lib.linux-riscv64-3.10/clipper/tst_hendrickson_lattman.py creating build/lib.linux-riscv64-3.10/geometry copying with modification cctbx/geometry/__init__.py -> build/lib.linux-riscv64-3.10/geometry/__init__.py creating build/lib.linux-riscv64-3.10/masks copying with modification cctbx/masks/__init__.py -> build/lib.linux-riscv64-3.10/masks/__init__.py creating build/lib.linux-riscv64-3.10/web copying with modification cctbx/web/multiple_cell.py -> build/lib.linux-riscv64-3.10/web/multiple_cell.py copying cctbx/web/__init__.py -> build/lib.linux-riscv64-3.10/web copying with modification cctbx/web/io_utils.py -> build/lib.linux-riscv64-3.10/web/io_utils.py copying with modification cctbx/web/libtbx_help.py -> build/lib.linux-riscv64-3.10/web/libtbx_help.py copying with modification cctbx/web/emma.py -> build/lib.linux-riscv64-3.10/web/emma.py copying with modification cctbx/web/wyckoff.py -> build/lib.linux-riscv64-3.10/web/wyckoff.py copying with modification cctbx/web/lattice_symmetry.py -> build/lib.linux-riscv64-3.10/web/lattice_symmetry.py copying with modification cctbx/web/change_basis.py -> build/lib.linux-riscv64-3.10/web/change_basis.py copying with modification cctbx/web/browse_settings.py -> build/lib.linux-riscv64-3.10/web/browse_settings.py copying with modification cctbx/web/frac_cart.py -> build/lib.linux-riscv64-3.10/web/frac_cart.py copying with modification cctbx/web/phase_o_phrenia.py -> build/lib.linux-riscv64-3.10/web/phase_o_phrenia.py copying with modification cctbx/web/structure_factors_pdb.py -> build/lib.linux-riscv64-3.10/web/structure_factors_pdb.py copying with modification cctbx/web/dispatcher.py -> build/lib.linux-riscv64-3.10/web/dispatcher.py copying with modification cctbx/web/change_setting.py -> build/lib.linux-riscv64-3.10/web/change_setting.py copying with modification cctbx/web/cgi_utils.py -> build/lib.linux-riscv64-3.10/web/cgi_utils.py copying with modification cctbx/web/replay.py -> build/lib.linux-riscv64-3.10/web/replay.py copying with modification cctbx/web/explore_symmetry.py -> build/lib.linux-riscv64-3.10/web/explore_symmetry.py copying with modification cctbx/web/iotbx_cif_validate.py -> build/lib.linux-riscv64-3.10/web/iotbx_cif_validate.py copying with modification cctbx/web/all_axes.py -> build/lib.linux-riscv64-3.10/web/all_axes.py copying with modification cctbx/web/change_hand.py -> build/lib.linux-riscv64-3.10/web/change_hand.py copying with modification cctbx/web/shelx.py -> build/lib.linux-riscv64-3.10/web/shelx.py copying with modification cctbx/web/structure_factors.py -> build/lib.linux-riscv64-3.10/web/structure_factors.py creating build/lib.linux-riscv64-3.10/uctbx copying with modification cctbx/uctbx/__init__.py -> build/lib.linux-riscv64-3.10/uctbx/__init__.py copying with modification cctbx/uctbx/gruber_1973_table_1.py -> build/lib.linux-riscv64-3.10/uctbx/gruber_1973_table_1.py copying with modification cctbx/uctbx/reduction_base.py -> build/lib.linux-riscv64-3.10/uctbx/reduction_base.py copying with modification cctbx/uctbx/gruber_1973.py -> build/lib.linux-riscv64-3.10/uctbx/gruber_1973.py copying with modification cctbx/uctbx/krivy_gruber_1976.py -> build/lib.linux-riscv64-3.10/uctbx/krivy_gruber_1976.py creating build/lib.linux-riscv64-3.10/maptbx copying with modification cctbx/maptbx/__init__.py -> build/lib.linux-riscv64-3.10/maptbx/__init__.py copying with modification cctbx/maptbx/map_symmetry.py -> build/lib.linux-riscv64-3.10/maptbx/map_symmetry.py copying with modification cctbx/maptbx/tst_ccp.py -> build/lib.linux-riscv64-3.10/maptbx/tst_ccp.py copying with modification cctbx/maptbx/tst_peak_volume_estimate.py -> build/lib.linux-riscv64-3.10/maptbx/tst_peak_volume_estimate.py copying with modification cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/lib.linux-riscv64-3.10/maptbx/tst_map_peak_3d_as_2d.py copying with modification cctbx/maptbx/refine_scales_errors.py -> build/lib.linux-riscv64-3.10/maptbx/refine_scales_errors.py copying with modification cctbx/maptbx/mem.py -> build/lib.linux-riscv64-3.10/maptbx/mem.py copying with modification cctbx/maptbx/segment_and_split_map.py -> build/lib.linux-riscv64-3.10/maptbx/segment_and_split_map.py copying with modification cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/lib.linux-riscv64-3.10/maptbx/tst_resolution_from_map_and_model.py copying with modification cctbx/maptbx/tst_interpolation_2.py -> build/lib.linux-riscv64-3.10/maptbx/tst_interpolation_2.py copying with modification cctbx/maptbx/tst_interpolation.py -> build/lib.linux-riscv64-3.10/maptbx/tst_interpolation.py copying with modification cctbx/maptbx/resolution_from_map_and_model.py -> build/lib.linux-riscv64-3.10/maptbx/resolution_from_map_and_model.py copying with modification cctbx/maptbx/bcr.py -> build/lib.linux-riscv64-3.10/maptbx/bcr.py copying with modification cctbx/maptbx/tst_mask.py -> build/lib.linux-riscv64-3.10/maptbx/tst_mask.py copying with modification cctbx/maptbx/tst_target_and_gradients.py -> build/lib.linux-riscv64-3.10/maptbx/tst_target_and_gradients.py copying with modification cctbx/maptbx/tst_atom_curves.py -> build/lib.linux-riscv64-3.10/maptbx/tst_atom_curves.py copying with modification cctbx/maptbx/mask.py -> build/lib.linux-riscv64-3.10/maptbx/mask.py copying with modification cctbx/maptbx/prepare_map_for_docking.py -> build/lib.linux-riscv64-3.10/maptbx/prepare_map_for_docking.py copying with modification cctbx/maptbx/real_space_refinement_simple.py -> build/lib.linux-riscv64-3.10/maptbx/real_space_refinement_simple.py copying with modification cctbx/maptbx/auto_sharpen.py -> build/lib.linux-riscv64-3.10/maptbx/auto_sharpen.py copying with modification cctbx/maptbx/minimization.py -> build/lib.linux-riscv64-3.10/maptbx/minimization.py copying with modification cctbx/maptbx/refine_sharpening.py -> build/lib.linux-riscv64-3.10/maptbx/refine_sharpening.py copying with modification cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/lib.linux-riscv64-3.10/maptbx/tst_get_percentile_cutoffs.py copying with modification cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/lib.linux-riscv64-3.10/maptbx/tst_atom_radius_as_central_peak_width.py copying with modification cctbx/maptbx/tst_bcr.py -> build/lib.linux-riscv64-3.10/maptbx/tst_bcr.py copying with modification cctbx/maptbx/tst_asymmetric_map.py -> build/lib.linux-riscv64-3.10/maptbx/tst_asymmetric_map.py copying with modification cctbx/maptbx/box.py -> build/lib.linux-riscv64-3.10/maptbx/box.py copying with modification cctbx/maptbx/tst_real_space_refinement_simple.py -> build/lib.linux-riscv64-3.10/maptbx/tst_real_space_refinement_simple.py creating build/lib.linux-riscv64-3.10/array_family copying cctbx/array_family/__init__.py -> build/lib.linux-riscv64-3.10/array_family copying with modification cctbx/array_family/flex.py -> build/lib.linux-riscv64-3.10/array_family/flex.py creating build/lib.linux-riscv64-3.10/source_generators copying cctbx/source_generators/__init__.py -> build/lib.linux-riscv64-3.10/source_generators copying with modification cctbx/source_generators/flex_fwd_h.py -> build/lib.linux-riscv64-3.10/source_generators/flex_fwd_h.py creating build/lib.linux-riscv64-3.10/development copying with modification cctbx/development/make_cns_input.py -> build/lib.linux-riscv64-3.10/development/make_cns_input.py copying cctbx/development/__init__.py -> build/lib.linux-riscv64-3.10/development copying with modification cctbx/development/make_settings.py -> build/lib.linux-riscv64-3.10/development/make_settings.py copying with modification cctbx/development/run_shelx76.py -> build/lib.linux-riscv64-3.10/development/run_shelx76.py copying with modification cctbx/development/github.py -> build/lib.linux-riscv64-3.10/development/github.py copying with modification cctbx/development/tst_cns_epsilon.py -> build/lib.linux-riscv64-3.10/development/tst_cns_epsilon.py copying with modification cctbx/development/space_group_option_parser.py -> build/lib.linux-riscv64-3.10/development/space_group_option_parser.py copying with modification cctbx/development/structure_factor_utils.py -> build/lib.linux-riscv64-3.10/development/structure_factor_utils.py copying with modification cctbx/development/fmt_utils.py -> build/lib.linux-riscv64-3.10/development/fmt_utils.py copying with modification cctbx/development/electron_density_sampling.py -> build/lib.linux-riscv64-3.10/development/electron_density_sampling.py copying with modification cctbx/development/create_models_or_maps.py -> build/lib.linux-riscv64-3.10/development/create_models_or_maps.py copying with modification cctbx/development/direct_or_fft.py -> build/lib.linux-riscv64-3.10/development/direct_or_fft.py copying with modification cctbx/development/debug_utils.py -> build/lib.linux-riscv64-3.10/development/debug_utils.py copying with modification cctbx/development/approx_amplitude_vs_resolution.py -> build/lib.linux-riscv64-3.10/development/approx_amplitude_vs_resolution.py copying with modification cctbx/development/run_shelx.py -> build/lib.linux-riscv64-3.10/development/run_shelx.py copying with modification cctbx/development/tst_cns_hl.py -> build/lib.linux-riscv64-3.10/development/tst_cns_hl.py copying with modification cctbx/development/cns_density_modification.py -> build/lib.linux-riscv64-3.10/development/cns_density_modification.py copying with modification cctbx/development/random_structure.py -> build/lib.linux-riscv64-3.10/development/random_structure.py creating build/lib.linux-riscv64-3.10/regression copying cctbx/regression/__init__.py -> build/lib.linux-riscv64-3.10/regression copying with modification cctbx/regression/tst_fast_nv1995.py -> build/lib.linux-riscv64-3.10/regression/tst_fast_nv1995.py copying with modification cctbx/regression/tst_miller.py -> build/lib.linux-riscv64-3.10/regression/tst_miller.py copying with modification cctbx/regression/tst_adp_constraints.py -> build/lib.linux-riscv64-3.10/regression/tst_adp_constraints.py copying with modification cctbx/regression/tst_connectivity.py -> build/lib.linux-riscv64-3.10/regression/tst_connectivity.py copying with modification cctbx/regression/tst_emma.py -> build/lib.linux-riscv64-3.10/regression/tst_emma.py copying with modification cctbx/regression/tst_fcalc_fft_stability.py -> build/lib.linux-riscv64-3.10/regression/tst_fcalc_fft_stability.py copying with modification cctbx/regression/tst_geometry_restraints.py -> build/lib.linux-riscv64-3.10/regression/tst_geometry_restraints.py copying with modification cctbx/regression/tst_direct_scaling.py -> build/lib.linux-riscv64-3.10/regression/tst_direct_scaling.py copying with modification cctbx/regression/tst_grouped_data.py -> build/lib.linux-riscv64-3.10/regression/tst_grouped_data.py copying with modification cctbx/regression/tst_xray.py -> build/lib.linux-riscv64-3.10/regression/tst_xray.py copying with modification cctbx/regression/tst_krivy_gruber.py -> build/lib.linux-riscv64-3.10/regression/tst_krivy_gruber.py copying with modification cctbx/regression/tst_sgtbx_site_constraints.py -> build/lib.linux-riscv64-3.10/regression/tst_sgtbx_site_constraints.py copying with modification cctbx/regression/tst_xray_minimization.py -> build/lib.linux-riscv64-3.10/regression/tst_xray_minimization.py copying with modification cctbx/regression/tst_connectivity_allsym.py -> build/lib.linux-riscv64-3.10/regression/tst_connectivity_allsym.py copying with modification cctbx/regression/tst_xray_fast_gradients.py -> build/lib.linux-riscv64-3.10/regression/tst_xray_fast_gradients.py copying with modification cctbx/regression/tst_adp_constraints_cartesian.py -> build/lib.linux-riscv64-3.10/regression/tst_adp_constraints_cartesian.py copying with modification cctbx/regression/tst_crystal_close_packing.py -> build/lib.linux-riscv64-3.10/regression/tst_crystal_close_packing.py copying with modification cctbx/regression/tst_crystal.py -> build/lib.linux-riscv64-3.10/regression/tst_crystal.py copying with modification cctbx/regression/tst_sampled_model_density.py -> build/lib.linux-riscv64-3.10/regression/tst_sampled_model_density.py copying with modification cctbx/regression/tst_diffuse.py -> build/lib.linux-riscv64-3.10/regression/tst_diffuse.py copying with modification cctbx/regression/tst_adp_aniso_restraints.py -> build/lib.linux-riscv64-3.10/regression/tst_adp_aniso_restraints.py copying with modification cctbx/regression/tst_miller_data_manipulation.py -> build/lib.linux-riscv64-3.10/regression/tst_miller_data_manipulation.py copying with modification cctbx/regression/tst_reciprocal_space_asu.py -> build/lib.linux-riscv64-3.10/regression/tst_reciprocal_space_asu.py copying with modification cctbx/regression/tst_refine_xray_curvs.py -> build/lib.linux-riscv64-3.10/regression/tst_refine_xray_curvs.py copying with modification cctbx/regression/tst_maptbx_mask.py -> build/lib.linux-riscv64-3.10/regression/tst_maptbx_mask.py copying with modification cctbx/regression/tst_sgtbx.py -> build/lib.linux-riscv64-3.10/regression/tst_sgtbx.py copying with modification cctbx/regression/tst_maptbx_box.py -> build/lib.linux-riscv64-3.10/regression/tst_maptbx_box.py copying with modification cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/lib.linux-riscv64-3.10/regression/tst_sgtbx_lattice_symmetry.py copying with modification cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/lib.linux-riscv64-3.10/regression/tst_geometry_restraints_lbfgs.py copying with modification cctbx/regression/tst_pointgroup_tools.py -> build/lib.linux-riscv64-3.10/regression/tst_pointgroup_tools.py copying with modification cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/lib.linux-riscv64-3.10/regression/tst_map_weights_for_symmetry_summation.py copying with modification cctbx/regression/tst_sf_low_res_accuracy.py -> build/lib.linux-riscv64-3.10/regression/tst_sf_low_res_accuracy.py copying with modification cctbx/regression/tst_statistics_graphs.py -> build/lib.linux-riscv64-3.10/regression/tst_statistics_graphs.py copying with modification cctbx/regression/tst_xray_target_functors.py -> build/lib.linux-riscv64-3.10/regression/tst_xray_target_functors.py copying with modification cctbx/regression/tst_miller_statistics.py -> build/lib.linux-riscv64-3.10/regression/tst_miller_statistics.py copying with modification cctbx/regression/tst_sphericity.py -> build/lib.linux-riscv64-3.10/regression/tst_sphericity.py copying with modification cctbx/regression/tst_grm_modifications.py -> build/lib.linux-riscv64-3.10/regression/tst_grm_modifications.py copying with modification cctbx/regression/tst_expand_to_p1.py -> build/lib.linux-riscv64-3.10/regression/tst_expand_to_p1.py copying with modification cctbx/regression/tst_web_change_basis.py -> build/lib.linux-riscv64-3.10/regression/tst_web_change_basis.py copying with modification cctbx/regression/tst_french_wilson.py -> build/lib.linux-riscv64-3.10/regression/tst_french_wilson.py copying with modification cctbx/regression/tst_r_free_utils.py -> build/lib.linux-riscv64-3.10/regression/tst_r_free_utils.py copying with modification cctbx/regression/tst_find_best_cell.py -> build/lib.linux-riscv64-3.10/regression/tst_find_best_cell.py copying with modification cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/lib.linux-riscv64-3.10/regression/tst_sgtbx_tidy_pickling.py copying with modification cctbx/regression/tst_reflection_statistics.py -> build/lib.linux-riscv64-3.10/regression/tst_reflection_statistics.py copying with modification cctbx/regression/tst_miller_lookup_utils.py -> build/lib.linux-riscv64-3.10/regression/tst_miller_lookup_utils.py copying with modification cctbx/regression/tst_twin_target.py -> build/lib.linux-riscv64-3.10/regression/tst_twin_target.py copying with modification cctbx/regression/tst_maptbx_structure_factors.py -> build/lib.linux-riscv64-3.10/regression/tst_maptbx_structure_factors.py copying with modification cctbx/regression/tst_prepare_map_for_docking.py -> build/lib.linux-riscv64-3.10/regression/tst_prepare_map_for_docking.py copying with modification cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/lib.linux-riscv64-3.10/regression/tst_itvb_2001_table_a1427_hall_symbols.py copying with modification cctbx/regression/tst_crystal_asu_clusters.py -> build/lib.linux-riscv64-3.10/regression/tst_crystal_asu_clusters.py copying with modification cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/lib.linux-riscv64-3.10/regression/tst_space_group_type_tidy_cb_op_t.py copying with modification cctbx/regression/tst_miller_double_step_filtration.py -> build/lib.linux-riscv64-3.10/regression/tst_miller_double_step_filtration.py copying with modification cctbx/regression/tst_xray_derivatives.py -> build/lib.linux-riscv64-3.10/regression/tst_xray_derivatives.py copying with modification cctbx/regression/tst_mem.py -> build/lib.linux-riscv64-3.10/regression/tst_mem.py copying with modification cctbx/regression/tst_wilson_plot.py -> build/lib.linux-riscv64-3.10/regression/tst_wilson_plot.py copying with modification cctbx/regression/tst_triplet_generator.py -> build/lib.linux-riscv64-3.10/regression/tst_triplet_generator.py copying with modification cctbx/regression/tst_sgtbx_denominators.py -> build/lib.linux-riscv64-3.10/regression/tst_sgtbx_denominators.py copying with modification cctbx/regression/tst_mem_2.py -> build/lib.linux-riscv64-3.10/regression/tst_mem_2.py copying with modification cctbx/regression/tst_create_models_or_maps.py -> build/lib.linux-riscv64-3.10/regression/tst_create_models_or_maps.py copying with modification cctbx/regression/tst_miller_merge_equivalents.py -> build/lib.linux-riscv64-3.10/regression/tst_miller_merge_equivalents.py copying with modification cctbx/regression/tst_grm_pickling.py -> build/lib.linux-riscv64-3.10/regression/tst_grm_pickling.py copying with modification cctbx/regression/tst_pair_asu_table.py -> build/lib.linux-riscv64-3.10/regression/tst_pair_asu_table.py copying with modification cctbx/regression/tst_weighting_schemes.py -> build/lib.linux-riscv64-3.10/regression/tst_weighting_schemes.py copying with modification cctbx/regression/tst_miller_fft_map.py -> build/lib.linux-riscv64-3.10/regression/tst_miller_fft_map.py copying with modification cctbx/regression/tst_coordination_sequences.py -> build/lib.linux-riscv64-3.10/regression/tst_coordination_sequences.py copying with modification cctbx/regression/tst_direct_space_asu.py -> build/lib.linux-riscv64-3.10/regression/tst_direct_space_asu.py copying with modification cctbx/regression/tst_map_is_periodic.py -> build/lib.linux-riscv64-3.10/regression/tst_map_is_periodic.py copying with modification cctbx/regression/tst_change_basis.py -> build/lib.linux-riscv64-3.10/regression/tst_change_basis.py copying with modification cctbx/regression/tst_loc_res.py -> build/lib.linux-riscv64-3.10/regression/tst_loc_res.py copying with modification cctbx/regression/tst_show_cosets.py -> build/lib.linux-riscv64-3.10/regression/tst_show_cosets.py copying with modification cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/lib.linux-riscv64-3.10/regression/tst_sgtbx_special_op_simplifier.py copying with modification cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/lib.linux-riscv64-3.10/regression/tst_fourier_transform_real_part_at_x.py copying with modification cctbx/regression/tst_xray_minimization_failure.py -> build/lib.linux-riscv64-3.10/regression/tst_xray_minimization_failure.py copying with modification cctbx/regression/tst_geometry_restraints_2.py -> build/lib.linux-riscv64-3.10/regression/tst_geometry_restraints_2.py copying with modification cctbx/regression/tst_sgtbx_harker.py -> build/lib.linux-riscv64-3.10/regression/tst_sgtbx_harker.py copying with modification cctbx/regression/tst_f_model.py -> build/lib.linux-riscv64-3.10/regression/tst_f_model.py copying with modification cctbx/regression/tst_amplitude_normalisation.py -> build/lib.linux-riscv64-3.10/regression/tst_amplitude_normalisation.py copying with modification cctbx/regression/tst_sgtbx_subgroups.py -> build/lib.linux-riscv64-3.10/regression/tst_sgtbx_subgroups.py copying with modification cctbx/regression/tst_math_module.py -> build/lib.linux-riscv64-3.10/regression/tst_math_module.py creating build/lib.linux-riscv64-3.10/eltbx copying cctbx/eltbx/__init__.py -> build/lib.linux-riscv64-3.10/eltbx copying with modification cctbx/eltbx/read_custom_scattering_dict.py -> build/lib.linux-riscv64-3.10/eltbx/read_custom_scattering_dict.py copying with modification cctbx/eltbx/formula.py -> build/lib.linux-riscv64-3.10/eltbx/formula.py copying with modification cctbx/eltbx/covalent_radii.py -> build/lib.linux-riscv64-3.10/eltbx/covalent_radii.py copying with modification cctbx/eltbx/tiny_pse.py -> build/lib.linux-riscv64-3.10/eltbx/tiny_pse.py copying with modification cctbx/eltbx/gaussian_fit.py -> build/lib.linux-riscv64-3.10/eltbx/gaussian_fit.py copying with modification cctbx/eltbx/neutron.py -> build/lib.linux-riscv64-3.10/eltbx/neutron.py copying with modification cctbx/eltbx/sasaki.py -> build/lib.linux-riscv64-3.10/eltbx/sasaki.py copying with modification cctbx/eltbx/henke.py -> build/lib.linux-riscv64-3.10/eltbx/henke.py copying with modification cctbx/eltbx/distance_based_connectivity.py -> build/lib.linux-riscv64-3.10/eltbx/distance_based_connectivity.py copying with modification cctbx/eltbx/attenuation_coefficient.py -> build/lib.linux-riscv64-3.10/eltbx/attenuation_coefficient.py copying with modification cctbx/eltbx/chemical_elements.py -> build/lib.linux-riscv64-3.10/eltbx/chemical_elements.py copying with modification cctbx/eltbx/fp_fdp.py -> build/lib.linux-riscv64-3.10/eltbx/fp_fdp.py copying with modification cctbx/eltbx/icsd_radii.py -> build/lib.linux-riscv64-3.10/eltbx/icsd_radii.py copying with modification cctbx/eltbx/wavelengths.py -> build/lib.linux-riscv64-3.10/eltbx/wavelengths.py copying with modification cctbx/eltbx/van_der_waals_radii.py -> build/lib.linux-riscv64-3.10/eltbx/van_der_waals_radii.py copying with modification cctbx/eltbx/e_scattering.py -> build/lib.linux-riscv64-3.10/eltbx/e_scattering.py creating build/lib.linux-riscv64-3.10/macro_mol copying cctbx/macro_mol/__init__.py -> build/lib.linux-riscv64-3.10/macro_mol copying with modification cctbx/macro_mol/rotation_parameters.py -> build/lib.linux-riscv64-3.10/macro_mol/rotation_parameters.py creating build/lib.linux-riscv64-3.10/sgtbx copying with modification cctbx/sgtbx/__init__.py -> build/lib.linux-riscv64-3.10/sgtbx/__init__.py copying with modification cctbx/sgtbx/literal_description.py -> build/lib.linux-riscv64-3.10/sgtbx/literal_description.py copying with modification cctbx/sgtbx/bravais_types.py -> build/lib.linux-riscv64-3.10/sgtbx/bravais_types.py copying with modification cctbx/sgtbx/pointgroup_tools.py -> build/lib.linux-riscv64-3.10/sgtbx/pointgroup_tools.py copying with modification cctbx/sgtbx/cosets.py -> build/lib.linux-riscv64-3.10/sgtbx/cosets.py copying with modification cctbx/sgtbx/lattice_symmetry.py -> build/lib.linux-riscv64-3.10/sgtbx/lattice_symmetry.py copying with modification cctbx/sgtbx/sys_abs_equiv.py -> build/lib.linux-riscv64-3.10/sgtbx/sys_abs_equiv.py copying with modification cctbx/sgtbx/symbol_confidence.py -> build/lib.linux-riscv64-3.10/sgtbx/symbol_confidence.py copying with modification cctbx/sgtbx/show_cosets.py -> build/lib.linux-riscv64-3.10/sgtbx/show_cosets.py copying with modification cctbx/sgtbx/rational_matrices_point_groups.py -> build/lib.linux-riscv64-3.10/sgtbx/rational_matrices_point_groups.py copying with modification cctbx/sgtbx/plane_groups.py -> build/lib.linux-riscv64-3.10/sgtbx/plane_groups.py copying with modification cctbx/sgtbx/reticular_pg_tools.py -> build/lib.linux-riscv64-3.10/sgtbx/reticular_pg_tools.py copying with modification cctbx/sgtbx/sub_lattice_tools.py -> build/lib.linux-riscv64-3.10/sgtbx/sub_lattice_tools.py copying with modification cctbx/sgtbx/reticular_twin_laws.py -> build/lib.linux-riscv64-3.10/sgtbx/reticular_twin_laws.py copying with modification cctbx/sgtbx/subgroups.py -> build/lib.linux-riscv64-3.10/sgtbx/subgroups.py copying with modification cctbx/sgtbx/harker.py -> build/lib.linux-riscv64-3.10/sgtbx/harker.py creating build/lib.linux-riscv64-3.10/adp_restraints copying with modification cctbx/adp_restraints/__init__.py -> build/lib.linux-riscv64-3.10/adp_restraints/__init__.py copying with modification cctbx/adp_restraints/flags.py -> build/lib.linux-riscv64-3.10/adp_restraints/flags.py copying with modification cctbx/adp_restraints/energies.py -> build/lib.linux-riscv64-3.10/adp_restraints/energies.py copying with modification cctbx/adp_restraints/tst_ext.py -> build/lib.linux-riscv64-3.10/adp_restraints/tst_ext.py creating build/lib.linux-riscv64-3.10/covariance copying with modification cctbx/covariance/__init__.py -> build/lib.linux-riscv64-3.10/covariance/__init__.py creating build/lib.linux-riscv64-3.10/crystal copying with modification cctbx/crystal/super_cell.py -> build/lib.linux-riscv64-3.10/crystal/super_cell.py copying with modification cctbx/crystal/__init__.py -> build/lib.linux-riscv64-3.10/crystal/__init__.py copying with modification cctbx/crystal/find_best_cell.py -> build/lib.linux-riscv64-3.10/crystal/find_best_cell.py copying with modification cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/lib.linux-riscv64-3.10/crystal/burzlaff_zimmermann_dewolff.py copying with modification cctbx/crystal/tst_distance_based_connectivity.py -> build/lib.linux-riscv64-3.10/crystal/tst_distance_based_connectivity.py copying with modification cctbx/crystal/coordination_sequences.py -> build/lib.linux-riscv64-3.10/crystal/coordination_sequences.py copying with modification cctbx/crystal/distance_based_connectivity.py -> build/lib.linux-riscv64-3.10/crystal/distance_based_connectivity.py copying with modification cctbx/crystal/direct_space_asu.py -> build/lib.linux-riscv64-3.10/crystal/direct_space_asu.py copying with modification cctbx/crystal/close_packing.py -> build/lib.linux-riscv64-3.10/crystal/close_packing.py copying with modification cctbx/crystal/reindex.py -> build/lib.linux-riscv64-3.10/crystal/reindex.py copying with modification cctbx/crystal/tst_ext.py -> build/lib.linux-riscv64-3.10/crystal/tst_ext.py copying with modification cctbx/crystal/tst_super_cell.py -> build/lib.linux-riscv64-3.10/crystal/tst_super_cell.py creating build/lib.linux-riscv64-3.10/examples copying with modification cctbx/examples/find_distances_using_cpp_objects.py -> build/lib.linux-riscv64-3.10/examples/find_distances_using_cpp_objects.py copying with modification cctbx/examples/location_part.py -> build/lib.linux-riscv64-3.10/examples/location_part.py copying with modification cctbx/examples/tst_structure_factor_derivatives_3.py -> build/lib.linux-riscv64-3.10/examples/tst_structure_factor_derivatives_3.py copying cctbx/examples/__init__.py -> build/lib.linux-riscv64-3.10/examples copying with modification cctbx/examples/quartz_structure.py -> build/lib.linux-riscv64-3.10/examples/quartz_structure.py copying with modification cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/lib.linux-riscv64-3.10/examples/le_page_1982_vs_lebedev_2005.py copying with modification cctbx/examples/lebedev_2005_perturbation.py -> build/lib.linux-riscv64-3.10/examples/lebedev_2005_perturbation.py copying with modification cctbx/examples/map_skewness.py -> build/lib.linux-riscv64-3.10/examples/map_skewness.py copying with modification cctbx/examples/change_hand_p31.py -> build/lib.linux-riscv64-3.10/examples/change_hand_p31.py copying with modification cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/lib.linux-riscv64-3.10/examples/tst_exp_i_alpha_derivatives.py copying with modification cctbx/examples/g_exp_i_partial_derivatives.py -> build/lib.linux-riscv64-3.10/examples/g_exp_i_partial_derivatives.py copying with modification cctbx/examples/tst_structure_factor_derivatives_2.py -> build/lib.linux-riscv64-3.10/examples/tst_structure_factor_derivatives_2.py copying with modification cctbx/examples/hirshfeld_test.py -> build/lib.linux-riscv64-3.10/examples/hirshfeld_test.py copying with modification cctbx/examples/exp_i_alpha_derivatives.py -> build/lib.linux-riscv64-3.10/examples/exp_i_alpha_derivatives.py copying with modification cctbx/examples/symops_530.py -> build/lib.linux-riscv64-3.10/examples/symops_530.py copying with modification cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/lib.linux-riscv64-3.10/examples/tst_g_exp_i_alpha_derivatives.py copying with modification cctbx/examples/ccp4_map.py -> build/lib.linux-riscv64-3.10/examples/ccp4_map.py copying with modification cctbx/examples/analyze_adp.py -> build/lib.linux-riscv64-3.10/examples/analyze_adp.py copying with modification cctbx/examples/getting_started.py -> build/lib.linux-riscv64-3.10/examples/getting_started.py copying with modification cctbx/examples/tst_phase_o_phrenia.py -> build/lib.linux-riscv64-3.10/examples/tst_phase_o_phrenia.py copying with modification cctbx/examples/miller_common_sets.py -> build/lib.linux-riscv64-3.10/examples/miller_common_sets.py copying with modification cctbx/examples/adp_symmetry_constraints.py -> build/lib.linux-riscv64-3.10/examples/adp_symmetry_constraints.py copying with modification cctbx/examples/phase_o_phrenia.py -> build/lib.linux-riscv64-3.10/examples/phase_o_phrenia.py copying with modification cctbx/examples/structure_factor_derivatives_3.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_derivatives_3.py copying with modification cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/lib.linux-riscv64-3.10/examples/find_sys_abs_equiv_space_groups.py copying with modification cctbx/examples/random_puckers.py -> build/lib.linux-riscv64-3.10/examples/random_puckers.py copying with modification cctbx/examples/random_f_calc.py -> build/lib.linux-riscv64-3.10/examples/random_f_calc.py copying with modification cctbx/examples/fft_map_electron_density_around_atom.py -> build/lib.linux-riscv64-3.10/examples/fft_map_electron_density_around_atom.py copying with modification cctbx/examples/cr2o3_primitive_cell.py -> build/lib.linux-riscv64-3.10/examples/cr2o3_primitive_cell.py copying with modification cctbx/examples/tst_structure_factor_derivatives.py -> build/lib.linux-riscv64-3.10/examples/tst_structure_factor_derivatives.py copying with modification cctbx/examples/site_symmetry_constraints.py -> build/lib.linux-riscv64-3.10/examples/site_symmetry_constraints.py copying with modification cctbx/examples/miller_transform.py -> build/lib.linux-riscv64-3.10/examples/miller_transform.py copying with modification cctbx/examples/tst_structure_factor_derivatives_4.py -> build/lib.linux-riscv64-3.10/examples/tst_structure_factor_derivatives_4.py copying with modification cctbx/examples/unit_cell_minimizers.py -> build/lib.linux-riscv64-3.10/examples/unit_cell_minimizers.py copying with modification cctbx/examples/sub_group_graph.py -> build/lib.linux-riscv64-3.10/examples/sub_group_graph.py copying with modification cctbx/examples/structure_factor_derivatives.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_derivatives.py copying with modification cctbx/examples/steve_collins.py -> build/lib.linux-riscv64-3.10/examples/steve_collins.py copying with modification cctbx/examples/structure_factor_derivatives_2.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_derivatives_2.py copying with modification cctbx/examples/reduced_cell_two_folds.py -> build/lib.linux-riscv64-3.10/examples/reduced_cell_two_folds.py copying with modification cctbx/examples/unit_cell_refinement.py -> build/lib.linux-riscv64-3.10/examples/unit_cell_refinement.py copying with modification cctbx/examples/space_subgroups.py -> build/lib.linux-riscv64-3.10/examples/space_subgroups.py copying with modification cctbx/examples/neutron_structure_factors.py -> build/lib.linux-riscv64-3.10/examples/neutron_structure_factors.py copying with modification cctbx/examples/maximum_subgroups.py -> build/lib.linux-riscv64-3.10/examples/maximum_subgroups.py copying with modification cctbx/examples/space_group_matrices.py -> build/lib.linux-riscv64-3.10/examples/space_group_matrices.py copying with modification cctbx/examples/convert_ccp4_symop_lib.py -> build/lib.linux-riscv64-3.10/examples/convert_ccp4_symop_lib.py copying with modification cctbx/examples/site_symmetry_table.py -> build/lib.linux-riscv64-3.10/examples/site_symmetry_table.py copying with modification cctbx/examples/tst_space_subgroups.py -> build/lib.linux-riscv64-3.10/examples/tst_space_subgroups.py copying with modification cctbx/examples/g_exp_i_alpha_derivatives.py -> build/lib.linux-riscv64-3.10/examples/g_exp_i_alpha_derivatives.py copying with modification cctbx/examples/view_fft_map.py -> build/lib.linux-riscv64-3.10/examples/view_fft_map.py copying with modification cctbx/examples/list_non_principal_continuous_shifts.py -> build/lib.linux-riscv64-3.10/examples/list_non_principal_continuous_shifts.py copying with modification cctbx/examples/f_model_example.py -> build/lib.linux-riscv64-3.10/examples/f_model_example.py copying with modification cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/lib.linux-riscv64-3.10/examples/trigonal_r_vs_tetragonal_i.py copying with modification cctbx/examples/all_axes.py -> build/lib.linux-riscv64-3.10/examples/all_axes.py copying with modification cctbx/examples/structure_factor_derivatives_4.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_derivatives_4.py copying with modification cctbx/examples/cr2o3_consistency_checks.py -> build/lib.linux-riscv64-3.10/examples/cr2o3_consistency_checks.py creating build/lib.linux-riscv64-3.10/geometry_restraints copying with modification cctbx/geometry_restraints/__init__.py -> build/lib.linux-riscv64-3.10/geometry_restraints/__init__.py copying with modification cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/lib.linux-riscv64-3.10/geometry_restraints/tst_process_nonbonded_proxies.py copying with modification cctbx/geometry_restraints/auto_linking_types.py -> build/lib.linux-riscv64-3.10/geometry_restraints/auto_linking_types.py copying with modification cctbx/geometry_restraints/tst_proxy_registry.py -> build/lib.linux-riscv64-3.10/geometry_restraints/tst_proxy_registry.py copying with modification cctbx/geometry_restraints/tst_motif.py -> build/lib.linux-riscv64-3.10/geometry_restraints/tst_motif.py copying with modification cctbx/geometry_restraints/flags.py -> build/lib.linux-riscv64-3.10/geometry_restraints/flags.py copying with modification cctbx/geometry_restraints/tst_nonbonded_overlaps.py -> build/lib.linux-riscv64-3.10/geometry_restraints/tst_nonbonded_overlaps.py copying with modification cctbx/geometry_restraints/manager.py -> build/lib.linux-riscv64-3.10/geometry_restraints/manager.py copying with modification cctbx/geometry_restraints/base_geometry.py -> build/lib.linux-riscv64-3.10/geometry_restraints/base_geometry.py copying with modification cctbx/geometry_restraints/nonbonded_overlaps.py -> build/lib.linux-riscv64-3.10/geometry_restraints/nonbonded_overlaps.py copying with modification cctbx/geometry_restraints/linking_class.py -> build/lib.linux-riscv64-3.10/geometry_restraints/linking_class.py copying with modification cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/lib.linux-riscv64-3.10/geometry_restraints/process_nonbonded_proxies.py copying with modification cctbx/geometry_restraints/standard_cif_links.py -> build/lib.linux-riscv64-3.10/geometry_restraints/standard_cif_links.py copying with modification cctbx/geometry_restraints/energies.py -> build/lib.linux-riscv64-3.10/geometry_restraints/energies.py copying with modification cctbx/geometry_restraints/lbfgs.py -> build/lib.linux-riscv64-3.10/geometry_restraints/lbfgs.py copying with modification cctbx/geometry_restraints/distance_least_squares.py -> build/lib.linux-riscv64-3.10/geometry_restraints/distance_least_squares.py copying with modification cctbx/geometry_restraints/tst_angle_derivs.py -> build/lib.linux-riscv64-3.10/geometry_restraints/tst_angle_derivs.py copying with modification cctbx/geometry_restraints/tst_ext.py -> build/lib.linux-riscv64-3.10/geometry_restraints/tst_ext.py creating build/lib.linux-riscv64-3.10/omz copying with modification cctbx/omz/__init__.py -> build/lib.linux-riscv64-3.10/omz/__init__.py copying with modification cctbx/omz/tardy_adaptor.py -> build/lib.linux-riscv64-3.10/omz/tardy_adaptor.py copying with modification cctbx/omz/eval_iso_vs_refined.py -> build/lib.linux-riscv64-3.10/omz/eval_iso_vs_refined.py copying with modification cctbx/omz/bfgs.py -> build/lib.linux-riscv64-3.10/omz/bfgs.py copying with modification cctbx/omz/cif_refine.py -> build/lib.linux-riscv64-3.10/omz/cif_refine.py copying with modification cctbx/omz/cod_select_and_pickle.py -> build/lib.linux-riscv64-3.10/omz/cod_select_and_pickle.py copying with modification cctbx/omz/dev.py -> build/lib.linux-riscv64-3.10/omz/dev.py copying with modification cctbx/omz/cod_refine.py -> build/lib.linux-riscv64-3.10/omz/cod_refine.py copying with modification cctbx/omz/tst_dev.py -> build/lib.linux-riscv64-3.10/omz/tst_dev.py copying with modification cctbx/omz/tst_bfgs.py -> build/lib.linux-riscv64-3.10/omz/tst_bfgs.py copying with modification cctbx/omz/pdb_dev.py -> build/lib.linux-riscv64-3.10/omz/pdb_dev.py creating build/lib.linux-riscv64-3.10/command_line copying with modification cctbx/command_line/version.py -> build/lib.linux-riscv64-3.10/command_line/version.py copying cctbx/command_line/__init__.py -> build/lib.linux-riscv64-3.10/command_line copying with modification cctbx/command_line/find_reticular_twin_laws.py -> build/lib.linux-riscv64-3.10/command_line/find_reticular_twin_laws.py copying with modification cctbx/command_line/cctbx_test_nightly.py -> build/lib.linux-riscv64-3.10/command_line/cctbx_test_nightly.py copying with modification cctbx/command_line/euclidean_model_matching.py -> build/lib.linux-riscv64-3.10/command_line/euclidean_model_matching.py copying with modification cctbx/command_line/precession_view.py -> build/lib.linux-riscv64-3.10/command_line/precession_view.py copying with modification cctbx/command_line/brehm_diederichs.py -> build/lib.linux-riscv64-3.10/command_line/brehm_diederichs.py copying with modification cctbx/command_line/diffuse.py -> build/lib.linux-riscv64-3.10/command_line/diffuse.py copying with modification cctbx/command_line/form_factor_query.py -> build/lib.linux-riscv64-3.10/command_line/form_factor_query.py copying with modification cctbx/command_line/segment_and_split_map.py -> build/lib.linux-riscv64-3.10/command_line/segment_and_split_map.py copying with modification cctbx/command_line/space_group_info.py -> build/lib.linux-riscv64-3.10/command_line/space_group_info.py copying with modification cctbx/command_line/cod_select_and_pickle.py -> build/lib.linux-riscv64-3.10/command_line/cod_select_and_pickle.py copying with modification cctbx/command_line/structure_factor_timings.py -> build/lib.linux-riscv64-3.10/command_line/structure_factor_timings.py copying with modification cctbx/command_line/wavelength_units.py -> build/lib.linux-riscv64-3.10/command_line/wavelength_units.py copying with modification cctbx/command_line/eltbx.show_fp_fdp.py -> build/lib.linux-riscv64-3.10/command_line/eltbx.show_fp_fdp.py copying with modification cctbx/command_line/auto_sharpen.py -> build/lib.linux-riscv64-3.10/command_line/auto_sharpen.py copying with modification cctbx/command_line/xray_structure.show.py -> build/lib.linux-riscv64-3.10/command_line/xray_structure.show.py copying with modification cctbx/command_line/samosa_join.py -> build/lib.linux-riscv64-3.10/command_line/samosa_join.py copying with modification cctbx/command_line/samosa_scale.py -> build/lib.linux-riscv64-3.10/command_line/samosa_scale.py copying with modification cctbx/command_line/subgroups.py -> build/lib.linux-riscv64-3.10/command_line/subgroups.py creating build/lib.linux-riscv64-3.10/neutron copying with modification cctbx/neutron/__init__.py -> build/lib.linux-riscv64-3.10/neutron/__init__.py creating build/lib.linux-riscv64-3.10/merging copying with modification cctbx/merging/__init__.py -> build/lib.linux-riscv64-3.10/merging/__init__.py copying with modification cctbx/merging/brehm_diederichs.py -> build/lib.linux-riscv64-3.10/merging/brehm_diederichs.py creating build/lib.linux-riscv64-3.10/miller copying with modification cctbx/miller/__init__.py -> build/lib.linux-riscv64-3.10/miller/__init__.py copying with modification cctbx/miller/display2.py -> build/lib.linux-riscv64-3.10/miller/display2.py copying with modification cctbx/miller/tst_map_to_asu_isym.py -> build/lib.linux-riscv64-3.10/miller/tst_map_to_asu_isym.py copying with modification cctbx/miller/tst_reindexing.py -> build/lib.linux-riscv64-3.10/miller/tst_reindexing.py copying with modification cctbx/miller/display.py -> build/lib.linux-riscv64-3.10/miller/display.py copying with modification cctbx/miller/reindexing.py -> build/lib.linux-riscv64-3.10/miller/reindexing.py creating build/lib.linux-riscv64-3.10/xray copying with modification cctbx/xray/__init__.py -> build/lib.linux-riscv64-3.10/xray/__init__.py copying with modification cctbx/xray/observation_types.py -> build/lib.linux-riscv64-3.10/xray/observation_types.py copying with modification cctbx/xray/ext.py -> build/lib.linux-riscv64-3.10/xray/ext.py copying with modification cctbx/xray/scatterer.py -> build/lib.linux-riscv64-3.10/xray/scatterer.py copying with modification cctbx/xray/structure.py -> build/lib.linux-riscv64-3.10/xray/structure.py copying with modification cctbx/xray/weighting_schemes.py -> build/lib.linux-riscv64-3.10/xray/weighting_schemes.py copying with modification cctbx/xray/minimization.py -> build/lib.linux-riscv64-3.10/xray/minimization.py copying with modification cctbx/xray/target_functors.py -> build/lib.linux-riscv64-3.10/xray/target_functors.py creating build/lib.linux-riscv64-3.10/web/asu_gallery copying with modification cctbx/web/asu_gallery/__init__.py -> build/lib.linux-riscv64-3.10/web/asu_gallery/__init__.py copying with modification cctbx/web/asu_gallery/jvx.py -> build/lib.linux-riscv64-3.10/web/asu_gallery/jvx.py copying with modification cctbx/web/asu_gallery/guide_to_notation.py -> build/lib.linux-riscv64-3.10/web/asu_gallery/guide_to_notation.py copying with modification cctbx/web/asu_gallery/jv_asu.py -> build/lib.linux-riscv64-3.10/web/asu_gallery/jv_asu.py copying with modification cctbx/web/asu_gallery/web_links.py -> build/lib.linux-riscv64-3.10/web/asu_gallery/web_links.py copying with modification cctbx/web/asu_gallery/jv_index.py -> build/lib.linux-riscv64-3.10/web/asu_gallery/jv_index.py creating build/lib.linux-riscv64-3.10/uctbx/determine_unit_cell copying with modification cctbx/uctbx/determine_unit_cell/__init__.py -> build/lib.linux-riscv64-3.10/uctbx/determine_unit_cell/__init__.py creating build/lib.linux-riscv64-3.10/source_generators/eltbx copying cctbx/source_generators/eltbx/__init__.py -> build/lib.linux-riscv64-3.10/source_generators/eltbx copying with modification cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/lib.linux-riscv64-3.10/source_generators/eltbx/generate_henke_cpp.py copying with modification cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/lib.linux-riscv64-3.10/source_generators/eltbx/generate_sasaki_cpp.py creating build/lib.linux-riscv64-3.10/eltbx/xray_scattering copying with modification cctbx/eltbx/xray_scattering/__init__.py -> build/lib.linux-riscv64-3.10/eltbx/xray_scattering/__init__.py creating build/lib.linux-riscv64-3.10/eltbx/development copying cctbx/eltbx/development/__init__.py -> build/lib.linux-riscv64-3.10/eltbx/development copying with modification cctbx/eltbx/development/itvc_kissel.py -> build/lib.linux-riscv64-3.10/eltbx/development/itvc_kissel.py copying with modification cctbx/eltbx/development/itvc_cross_validation.py -> build/lib.linux-riscv64-3.10/eltbx/development/itvc_cross_validation.py copying with modification cctbx/eltbx/development/combine_fits.py -> build/lib.linux-riscv64-3.10/eltbx/development/combine_fits.py copying with modification cctbx/eltbx/development/rez_rez_grant.py -> build/lib.linux-riscv64-3.10/eltbx/development/rez_rez_grant.py copying with modification cctbx/eltbx/development/itvc_section61_io.py -> build/lib.linux-riscv64-3.10/eltbx/development/itvc_section61_io.py copying with modification cctbx/eltbx/development/hydrogen_plots.py -> build/lib.linux-riscv64-3.10/eltbx/development/hydrogen_plots.py copying with modification cctbx/eltbx/development/itvc_fits.py -> build/lib.linux-riscv64-3.10/eltbx/development/itvc_fits.py copying with modification cctbx/eltbx/development/kissel_fits.py -> build/lib.linux-riscv64-3.10/eltbx/development/kissel_fits.py copying with modification cctbx/eltbx/development/e_scattering_plots.py -> build/lib.linux-riscv64-3.10/eltbx/development/e_scattering_plots.py copying with modification cctbx/eltbx/development/itvc_approx.py -> build/lib.linux-riscv64-3.10/eltbx/development/itvc_approx.py copying with modification cctbx/eltbx/development/kissel_io.py -> build/lib.linux-riscv64-3.10/eltbx/development/kissel_io.py copying with modification cctbx/eltbx/development/format_gaussian_fits.py -> build/lib.linux-riscv64-3.10/eltbx/development/format_gaussian_fits.py copying with modification cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/lib.linux-riscv64-3.10/eltbx/development/create_n_gaussian_raw_cpp.py creating build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu copying with modification cctbx/sgtbx/direct_space_asu/reference_table.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/reference_table.py copying with modification cctbx/sgtbx/direct_space_asu/__init__.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/__init__.py copying with modification cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/cut_plane.py copying with modification cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/short_cuts.py copying with modification cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/plane_group_reference_table.py copying with modification cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/check_redundancies.py copying with modification cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/facet_analysis.py creating build/lib.linux-riscv64-3.10/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/__init__.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_calculus copying with modification cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_calculus/u_star_derivatives.py copying with modification cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_calculus/sites_least_squares_derivatives.py copying with modification cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_calculus/sites_derivatives.py copying with modification cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/lib.linux-riscv64-3.10/examples/structure_factor_calculus/site_derivatives.py creating build/lib.linux-riscv64-3.10/examples/merging copying with modification cctbx/examples/merging/__init__.py -> build/lib.linux-riscv64-3.10/examples/merging/__init__.py copying with modification cctbx/examples/merging/data_utilities.py -> build/lib.linux-riscv64-3.10/examples/merging/data_utilities.py copying with modification cctbx/examples/merging/test1.py -> build/lib.linux-riscv64-3.10/examples/merging/test1.py copying with modification cctbx/examples/merging/test_levenberg_sparse.py -> build/lib.linux-riscv64-3.10/examples/merging/test_levenberg_sparse.py copying with modification cctbx/examples/merging/test_cc_half.py -> build/lib.linux-riscv64-3.10/examples/merging/test_cc_half.py copying with modification cctbx/examples/merging/data_subset.py -> build/lib.linux-riscv64-3.10/examples/merging/data_subset.py copying with modification cctbx/examples/merging/show_results.py -> build/lib.linux-riscv64-3.10/examples/merging/show_results.py copying with modification cctbx/examples/merging/sigma_correction.py -> build/lib.linux-riscv64-3.10/examples/merging/sigma_correction.py copying with modification cctbx/examples/merging/task4.py -> build/lib.linux-riscv64-3.10/examples/merging/task4.py copying with modification cctbx/examples/merging/tst_permutations.py -> build/lib.linux-riscv64-3.10/examples/merging/tst_permutations.py creating build/lib.linux-riscv64-3.10/xray/targets copying with modification cctbx/xray/targets/__init__.py -> build/lib.linux-riscv64-3.10/xray/targets/__init__.py copying with modification cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/lib.linux-riscv64-3.10/xray/targets/tst_shelxl_wght_ls.py copying with modification cctbx/xray/targets/tst_r1.py -> build/lib.linux-riscv64-3.10/xray/targets/tst_r1.py copying with modification cctbx/xray/targets/r1.py -> build/lib.linux-riscv64-3.10/xray/targets/r1.py creating build/lib.linux-riscv64-3.10/xray/observations copying with modification cctbx/xray/observations/__init__.py -> build/lib.linux-riscv64-3.10/xray/observations/__init__.py copying with modification cctbx/xray/observations/tst_observations.py -> build/lib.linux-riscv64-3.10/xray/observations/tst_observations.py creating build/lib.linux-riscv64-3.10/xray/structure_factors copying with modification cctbx/xray/structure_factors/from_scatterers_fft.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/from_scatterers_fft.py copying with modification cctbx/xray/structure_factors/__init__.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/__init__.py copying with modification cctbx/xray/structure_factors/misc.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/misc.py copying with modification cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/from_scatterers_direct_parallel.py copying with modification cctbx/xray/structure_factors/from_scatterers_direct.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/from_scatterers_direct.py copying with modification cctbx/xray/structure_factors/gradients.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/gradients.py copying with modification cctbx/xray/structure_factors/gradient_flags.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/gradient_flags.py copying with modification cctbx/xray/structure_factors/manager.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/manager.py copying with modification cctbx/xray/structure_factors/gradients_direct.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/gradients_direct.py copying with modification cctbx/xray/structure_factors/gradients_base.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/gradients_base.py copying with modification cctbx/xray/structure_factors/from_scatterers.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/from_scatterers.py copying with modification cctbx/xray/structure_factors/global_counters.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/global_counters.py copying with modification cctbx/xray/structure_factors/gradients_fft.py -> build/lib.linux-riscv64-3.10/xray/structure_factors/gradients_fft.py creating build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/proto copying with modification cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/proto/__init__.py copying with modification cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py copying with modification cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/lib.linux-riscv64-3.10/sgtbx/direct_space_asu/proto/tst_asu.py creating build/lib.linux-riscv64-3.10/examples/merging/samosa copying cctbx/examples/merging/samosa/__init__.py -> build/lib.linux-riscv64-3.10/examples/merging/samosa copying with modification cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/lib.linux-riscv64-3.10/examples/merging/samosa/per_lattice_postrefinement.py copying with modification cctbx/examples/merging/samosa/join.py -> build/lib.linux-riscv64-3.10/examples/merging/samosa/join.py copying with modification cctbx/examples/merging/samosa/scale.py -> build/lib.linux-riscv64-3.10/examples/merging/samosa/scale.py file cctbx/stdlib.py (for module stdlib) not found running build_ext /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( Python: 3.10.2 "/usr/bin/python3" Compiler: default Build mode: release Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Use conda: False Use opt_resources if available: False Use environment flags: False Enable C++11: False command_version_suffix: None Relocatable paths anchored at: /<>/build/temp.linux-riscv64-3.10/cctbx-build Top-down list of all modules involved: Creating files in build directory: "/<>/build/temp.linux-riscv64-3.10/cctbx-build" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile Regenerating module files in /<>/build/temp.linux-riscv64-3.10/base Base directory '/<>/build/temp.linux-riscv64-3.10/base' does not exist. Assuming base-less installation, skipping module file regeneration /usr/bin/python3 /usr/bin/scons No entry for terminal type "unknown"; using dumb terminal settings. scons: Reading SConscript files ... scons: done reading SConscript files. scons: Building targets ... scons: `.' is up to date. scons: done building targets. cd /<>/build && python3 ../libtbx/configure.py --build=debug --use_environment_flags cctbx cbflib scitbx crys3d libtbx iotbx wxtbx smtbx Python: 3.10.2 "/usr/bin/python3" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security CFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-Bsymbolic-functions -Wl,-z,relro command_version_suffix: None Relocatable paths anchored at: /<>/build Top-down list of all modules involved: wxtbx "/<>/wxtbx" iotbx "/<>/iotbx" smtbx "/<>/smtbx" ucif "/<>/ucif" crys3d "/<>/crys3d" cctbx "/<>/cctbx" scitbx "/<>/scitbx" fable "/<>/fable" omptbx "/<>/omptbx" boost+adaptbx "/<>/boost" "/<>/boost_adaptbx" tbxx "/<>/tbxx" chiltbx "/<>/chiltbx" libtbx "/<>/libtbx" Creating files in build directory: "/<>/build" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/<>/libtbx/command_line" Processing: "/<>/boost_adaptbx/command_line" Processing: "/<>/fable/command_line" Processing: "/<>/scitbx/command_line" Processing: "/<>/cctbx/command_line" Processing: "/<>/crys3d/command_line" Processing: "/<>/smtbx/command_line" Processing: "/<>/iotbx/command_line" Processing: "/<>/wxtbx/command_line" Processing: "/<>/libtbx/libtbx_refresh.py" Processing: "/<>/boost_adaptbx/libtbx_refresh.py" Processing: "/<>/scitbx/libtbx_refresh.py" Generating C++ header files in: "/<>/build/include/scitbx/array_family" Generating C++ files in: "/<>/build/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( Processing: "/<>/cctbx/libtbx_refresh.py" Generating C++ files in: "/<>/build/cctbx/eltbx" Generating C++ files in: "/<>/build/include/cctbx/boost_python" Processing: "/<>/crys3d/libtbx_refresh.py" Processing: "/<>/smtbx/libtbx_refresh.py" Generating C++ files in: "/<>/build/include/smtbx/boost_python" Processing: "/<>/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Regenerating module files in /<>/base Base directory '/<>/base' does not exist. Assuming base-less installation, skipping module file regeneration Done. cd /<>/build && ./bin/libtbx.scons -j "8" No entry for terminal type "unknown"; using dumb terminal settings. scons: Reading SConscript files ... libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security CFLAGS = -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-Bsymbolic-functions -Wl,-z,relro libtbx.scons: OpenMP is disabled. BOOST_VERSION: 107400 Ignored: [Errno 2] No such file or directory: '/<>/build/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/<>/build/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/<>/build/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/<>/build/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/<>/build/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/<>/build/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/breadth_first_search_ext.cpp g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/clustering_algorithm_ext.cpp g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/connected_component_algorithm_ext.cpp g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/graph_ext.cpp g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/graph_structure_comparison_ext.cpp g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/maximum_clique_ext.cpp g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/metric_ext.cpp g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/min_cut_max_flow_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/graph/utility_ext.cpp g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/hybrid_times_ext.cpp g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/meta_ext.cpp g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/optional_ext.cpp g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/rational_ext.cpp g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/std_pair_ext.cpp g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/usr/include/python3.10 -I/<> /<>/boost_adaptbx/tests/boost_thread_test.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /<>/boost_adaptbx/graph/graph_type.hpp:4, from /<>/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/tests/python_streambuf_test_ext.cpp g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> /<>/boost_adaptbx/tests/tst_optional_copy.cpp g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread boost_adaptbx/tests/tst_optional_copy.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/boost_adaptbx/tuple_ext.cpp g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adp_restraints/adp_restraints_bpl.cpp g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adp_restraints/adp_restraints_ext.cpp g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adp_restraints/adp_similarity_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/boost_adaptbx/tests/python_streambuf_test_ext.cpp:2: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adp_restraints/aniso_restraints_bpl.cpp g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adp_restraints/isotropic_adp_bpl.cpp g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adp_restraints/rigid_bond_bpl.cpp g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adp_restraints/rigu_bpl.cpp g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adptbx/boost_python/adptbx_ext.cpp g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adptbx/boost_python/anharmonic_ext.cpp g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/adptbx/boost_python/hirshfeld.cpp g++ -o cctbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/array_family/boost_python/flex_ext.cpp g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/array_family/boost_python/flex_miller_index.cpp g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/array_family/boost_python/flex_xray_scatterer.cpp g++ -o cctbx/boost_python/emma_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/boost_python/emma_ext.cpp g++ -o cctbx/boost_python/french_wilson_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/boost_python/french_wilson_ext.cpp g++ -o cctbx/boost_python/orientation_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/boost_python/orientation_ext.cpp g++ -o cctbx/boost_python/statistics_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/boost_python/statistics_ext.cpp g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/covariance/boost_python/covariance_ext.cpp g++ -o cctbx/crystal/asu_clusters_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/asu_clusters_bpl.cpp g++ -o cctbx/crystal/close_packing_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/close_packing_bpl.cpp g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/coordination_sequences_bpl.cpp g++ -o cctbx/crystal/crystal_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/crystal_ext.cpp g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/direct_space_asu_bpl.cpp g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/incremental_pairs_bpl.cpp g++ -o cctbx/crystal/neighbors_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/neighbors_bpl.cpp g++ -o cctbx/crystal/pair_tables_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/pair_tables_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/crystal/incremental_pairs_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/site_cluster_analysis_bpl.cpp g++ -o cctbx/crystal/symmetry_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/crystal/symmetry_bpl.cpp g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/dmtbx/boost_python/dmtbx_ext.cpp g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/dmtbx/boost_python/triplet_generator.cpp g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/crystal/site_cluster_analysis_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/crystal/symmetry_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/eltbx/attenuation_coefficient.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/attenuation_coefficient.cpp g++ -o cctbx/eltbx/basic.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/basic.cpp g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/chemical_elements_ext.cpp g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/covalent_radii_ext.cpp g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/fp_fdp_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp:11: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/henke_ext.cpp g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/icsd_radii_ext.cpp g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/neutron_ext.cpp g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/sasaki_ext.cpp g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/tiny_pse_ext.cpp g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/wavelengths_ext.cpp g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/eltbx/boost_python/xray_scattering_ext.cpp g++ -o cctbx/eltbx/covalent_radii.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/covalent_radii.cpp g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/electron_scattering/peng1996.cpp g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/fp_fdp.cpp g++ -o cctbx/eltbx/henke.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke.cpp g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke_tables_01_12.cpp g++ -o cctbx/eltbx/henke_tables_13_24.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke_tables_13_24.cpp g++ -o cctbx/eltbx/henke_tables_25_36.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke_tables_25_36.cpp g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke_tables_37_48.cpp g++ -o cctbx/eltbx/henke_tables_49_60.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke_tables_49_60.cpp g++ -o cctbx/eltbx/henke_tables_61_72.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke_tables_61_72.cpp g++ -o cctbx/eltbx/henke_tables_73_84.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke_tables_73_84.cpp g++ -o cctbx/eltbx/henke_tables_85_92.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/henke_tables_85_92.cpp g++ -o cctbx/eltbx/icsd_radii.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/icsd_radii.cpp g++ -o cctbx/eltbx/neutron.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/neutron.cpp g++ -o cctbx/eltbx/sasaki.o -c -g -O2 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-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/sasaki_tables_13_24.cpp g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/sasaki_tables_25_36.cpp g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/sasaki_tables_37_48.cpp g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/sasaki_tables_49_60.cpp g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/sasaki_tables_61_72.cpp g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> cctbx/eltbx/sasaki_tables_73_82.cpp g++ -o cctbx/eltbx/tiny_pse.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/tiny_pse.cpp g++ -o cctbx/eltbx/wavelengths.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/wavelengths.cpp g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/xray_scattering/it1992.cpp g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/xray_scattering/n_gaussian.cpp g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/eltbx/xray_scattering/wk1995.cpp g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/convert_ccp4_symop_lib.cpp g++ -o cctbx/examples/find_distances.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/find_distances.cpp g++ -o cctbx/examples/getting_started.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/getting_started.cpp g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/lattice_symmetry.cpp g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/sym_equiv_sites.cpp g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Icctbx/examples -I/<>/cctbx/examples /<>/cctbx/examples/sys_abs_equiv_space_groups.cpp g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry/boost_python/geometry_ext.cpp g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/angle_bpl.cpp g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/bond_bpl.cpp g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/bond_similarity_bpl.cpp g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/bond_sorted_bpl.cpp g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/chirality_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /<>/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /<>/cctbx/geometry_restraints/bond_bpl.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/dihedral_bpl.cpp g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/geometry_restraints_ext.cpp g++ -o cctbx/geometry_restraints/motif_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/motif_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/geometry_restraints/bond_sorted_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/nonbonded_bpl.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/geometry_restraints/motif_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/parallelity_bpl.cpp g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/geometry_restraints/planarity_bpl.cpp g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/maptbx/asymmetric_map.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/build/include -I/<> /<>/cctbx/maptbx/asymmetric_map_ext.cpp g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/coordinate_transformers.cpp g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/grid_tags.cpp g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/gridding.cpp g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/maptbx_ext.cpp g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/misc.cpp g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/peak_search.cpp g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/pymol_interface.cpp g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/statistics.cpp g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/maptbx/boost_python/structure_factors.cpp g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/masks/boost_python/masks_ext.cpp g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/math/boost_python/math_ext.cpp g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/math/time_trigonometry.cpp g++ -o cctbx/miller/asu.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/miller/asu.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/smart_ptr/shared_array.hpp:24, from /usr/include/boost/shared_array.hpp:17, from /<>/cctbx/math/cos_sin_table.h:6, from /<>/cctbx/math/time_trigonometry.cpp:1: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/miller/bins.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/miller/bins.cpp g++ -o cctbx/miller/index_generator.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/miller/index_generator.cpp g++ -o cctbx/miller/index_span.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/miller/index_span.cpp g++ -o cctbx/miller/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/miller/match_bijvoet_mates.cpp g++ -o cctbx/miller/match_indices.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/miller/match_indices.cpp g++ -o cctbx/miller/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/miller/match_multi_indices.cpp g++ -o cctbx/miller/sym_equiv.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/miller/sym_equiv.cpp g++ -o cctbx/sgtbx/bricks.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/<>/build/include -I/<> /<>/cctbx/sgtbx/find_affine.cpp g++ -o cctbx/sgtbx/group_codes.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/group_codes.cpp g++ -o cctbx/sgtbx/hall_in.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/hall_in.cpp g++ -o cctbx/sgtbx/lattice_tr.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/tensor_rank_2.cpp g++ -o cctbx/sgtbx/tr_group.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/tr_group.cpp g++ -o cctbx/sgtbx/tr_vec.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/tr_vec.cpp g++ -o cctbx/sgtbx/utils.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/utils.cpp g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/wyckoff.cpp g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/cctbx/sgtbx/reference_settings/normalizer.cpp g++ -o 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/<>/cctbx/merging/ext.cpp g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/amplitude_normalisation.cpp g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/asu.cpp g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/bins.cpp g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/change_basis.cpp g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/expand_to_p1.cpp g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -Llib -L/<>/lib -Llib -L/<>/lib -lm Create symlinks for: 'lib/libcctbx.so.0.0.1': 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1', 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread cctbx/math/time_trigonometry.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lm g++ -o cctbx/miller/boost_python/f_calc_map.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/f_calc_map.cpp g++ -o cctbx/miller/boost_python/index_generator.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/index_generator.cpp g++ -o cctbx/miller/boost_python/index_span.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/index_span.cpp g++ -o cctbx/miller/boost_python/lookup_utils.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/lookup_utils.cpp g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/match_bijvoet_mates.cpp g++ -o cctbx/miller/boost_python/match_indices.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/match_indices.cpp g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/match_multi_indices.cpp g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/merge_equivalents.cpp g++ -o cctbx/miller/boost_python/miller_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/miller_ext.cpp g++ -o cctbx/miller/boost_python/phase_integrator.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/phase_integrator.cpp g++ -o cctbx/miller/boost_python/phase_transfer.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/phase_transfer.cpp g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp g++ -o cctbx/miller/boost_python/slices.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/slices.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/constants/constants.hpp:11, from /usr/include/boost/math/special_functions/gamma.hpp:24, from /usr/include/boost/math/special_functions/detail/bessel_jy.hpp:14, from /usr/include/boost/math/special_functions/bessel.hpp:20, from /<>/scitbx/math/bessel.h:9, from /<>/cctbx/hendrickson_lattman.h:6, from /<>/cctbx/miller/sym_equiv.h:4, from /<>/cctbx/miller/boost_python/miller_ext.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/miller/boost_python/sym_equiv.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/miller/boost_python/sym_equiv.cpp g++ -o cctbx/multipolar/aspherical_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/multipolar/aspherical_ext.cpp g++ -o cctbx/sgtbx/boost_python/brick.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/brick.cpp g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/change_of_basis.cpp g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/find_affine.cpp g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/lattice_symmetry.cpp g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/phase_info.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/multipolar/aspherical.h:12, from /<>/cctbx/multipolar/aspherical_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/rot_mx.cpp g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/rt_mx.cpp g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/search_symmetry.cpp g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/select_generators.cpp g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/sgtbx/boost_python/seminvariant.cpp g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -g -O2 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-I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/gradient_flags.cpp g++ -o cctbx/xray/boost_python/gradients_direct.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/gradients_direct.cpp g++ -o cctbx/xray/boost_python/grouped_data.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/grouped_data.cpp g++ -o cctbx/xray/boost_python/minimization.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/minimization.cpp g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/parameter_map.cpp g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/sampled_model_density.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/cctbx/xray/boost_python/parameter_map.cpp:3: /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sampling_base.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/sampling_base.cpp g++ -o cctbx/xray/boost_python/scatterer.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/scatterer.cpp g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/scatterer_flags.cpp g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/scattering_type_registry.cpp g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/sigmaa.cpp g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/structure_factors_direct.cpp /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:49:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const unique_counts_t&)’: /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4, from /<>/cctbx/xray/scattering_type_registry.h:4, from /<>/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/structure_factors_simple.cpp g++ -o cctbx/xray/boost_python/targets.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/targets.cpp g++ -o cctbx/xray/boost_python/twin_components.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/twin_components.cpp g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lm g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/twin_targets.cpp g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/boost_python/xray_ext.cpp Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1': 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1', 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/xray/observations/boost_python/observations.cpp g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/cctbx/xray/observations/boost_python/observations_ext.cpp g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp g++ -o chiltbx/handle_test.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> /<>/chiltbx/handle_test.cpp g++ -o chiltbx/handle_test -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro chiltbx/handle_test.o -Llib -L/<>/lib -Llib -L/<>/lib g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread cctbx/examples/convert_ccp4_symop_lib.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread cctbx/examples/find_distances.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread cctbx/examples/getting_started.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread cctbx/examples/lattice_symmetry.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread cctbx/examples/sym_equiv_sites.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread cctbx/examples/sys_abs_equiv_space_groups.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lboost_system -lm g++ -o fable/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<>/fable -I/<> -I/usr/include/python3.10 /<>/fable/ext.cpp g++ -o iotbx/detectors/bruker.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/detectors/bruker.cpp g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/detectors/bruker_ext.cpp g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/detectors/detectors_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp:22: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/detectors/image_divider.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/detectors/image_divider.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/fable/ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/dsn6/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/dsn6/ext.cpp g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/misc/boost_python/dtrek_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/iotbx/detectors/bruker_ext.cpp:18: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /<>/iotbx/detectors/scanbox.h:5, from /<>/iotbx/detectors/image_divider.h:2, from /<>/iotbx/detectors/detectors_ext.cpp:11: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/misc/boost_python/scalepack_ext.cpp g++ -o iotbx/pdb/atom_selection.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/atom_selection.cpp g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/common_residue_names_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/atom_selection.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/construct_hierarchy.cpp g++ -o iotbx/pdb/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/ext.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/construct_hierarchy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/hierarchy.cpp g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/hierarchy_atom_bpl.cpp g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/hierarchy_atoms.cpp g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/hierarchy_ext.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /<>/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp:242:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 242 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /<>/iotbx/pdb/hierarchy_atoms.cpp:248:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 248 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /<>/iotbx/pdb/hierarchy_atoms.cpp:257:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 257 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /<>/iotbx/pdb/hierarchy_atoms.cpp:261:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 261 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_atoms.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/hierarchy_select.cpp g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/hierarchy_write.cpp g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/hybrid_36_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_select.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_write.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:13: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4, from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:13: /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4, from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/cctbx/xray/scatterer_flags.h:5, from /<>/cctbx/xray/scatterer.h:4, from /<>/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_write.cpp:1: /<>/iotbx/pdb/hierarchy_atoms.h: At global scope: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_write.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_write.cpp:1: /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /<>/scitbx/array_family/detail/misc.h:5, from /<>/scitbx/array_family/tiny_plain.h:5, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/hierarchy_atoms.h:4, from /<>/iotbx/pdb/hierarchy_write.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/hybrid_36_c.c In file included from /<>/iotbx/pdb/hierarchy_ext.cpp:11: /<>/iotbx/pdb/hierarchy_atoms.h:157:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 157 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /<>/iotbx/pdb/hierarchy_ext.cpp:11: /<>/iotbx/pdb/hierarchy_atoms.h:163:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 163 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/hybrid_36_cpp.cpp g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/fable iotbx/pdb/hybrid_36_fem.cpp g++ -o iotbx/pdb/input.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/input.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/input.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/input_bpl.cpp g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread iotbx/pdb/hybrid_36_fem.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o iotbx/pdb/input_write.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/input_write.cpp g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/overall_counts.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/input.h:4, from /<>/iotbx/pdb/input_write.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/hierarchy.h:8, from /<>/iotbx/pdb/overall_counts.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/rna_dna_atom_names_bpl.cpp g++ -o iotbx/pdb/utils.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/utils.cpp g++ -o iotbx/pdb/write_utils.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/pdb/write_utils.cpp g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/pdb/xray_structure_bpl.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/shared.h:4, from /<>/iotbx/pdb/namespace.h:4, from /<>/iotbx/pdb/write_utils.h:5, from /<>/iotbx/pdb/write_utils.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /<>/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/iotbx/shelx/shelx_ext.cpp g++ -o iotbx/wildcard_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/usr/include/python3.10 /<>/iotbx/wildcard_ext.cpp g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/iotbx/xplor/boost_python/xplor_ext.cpp g++ -o iotbx/xplor/map_reader.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/xplor/map_reader.cpp g++ -o iotbx/xplor/map_writer.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/iotbx/xplor/map_writer.cpp g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1': 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1', 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1': 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1', 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1': 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1', 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1': 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1', 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1': 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1', 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1': 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1', 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1': 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1', 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1': 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1', 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1': 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1', 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1': 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1', 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1': 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1', 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_optional_ext.so.0.0.1': 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1', 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1': 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1', 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' /usr/bin/ld: g++ -o scitbx/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/boost_python/utils.cpp Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1': 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1', 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/boost_python/slice.cpp boost_adaptbx/meta_ext.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': ./build/./boost_adaptbx/floating_point_exceptions.h:50: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ./build/./boost_adaptbx/floating_point_exceptions.h:51: warning: feenableexcept is not implemented and will always fail /usr/bin/ld: boost_adaptbx/meta_ext.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': ./build/./boost_adaptbx/floating_point_exceptions.h:65: warning: fegetexcept is not implemented and will always fail Create symlinks for: 'lib/boost_rational_ext.so.0.0.1': 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1', 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/utils.cpp Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1': 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1', 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -Llib -L/<>/lib -Llib -L/<>/lib -lm Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1': 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1', 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o omptbx/stubs.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> /<>/omptbx/stubs.cpp g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=fable_ext.so.0 fable/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system Create symlinks for: 'lib/libomptbx.so.0.0.1': 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1', 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' Create symlinks for: 'lib/fable_ext.so.0.0.1': 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1', 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1': 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1', 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/libasymmetric_map.so.0.0.1': 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1', 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1': 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1', 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1': 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1', 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1': 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1', 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/boost_python/utils.h:5, from /<>/scitbx/array_family/boost_python/utils.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1': 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1', 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1': 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1', 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1': 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1', 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o scitbx/minpack/raw.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/scitbx/minpack/raw.cpp gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> /<>/scitbx/slatec/lib_c.c /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1': 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1', 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/affine.cpp g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1': 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1', 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/geometrical_hydrogens.cpp g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/occupancy.cpp Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1': 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1', 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/reparametrisation.cpp g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/rigid.cpp g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -rdynamic -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1': 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1', 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lm Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1': 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1', 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1': 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1', 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1': 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1', 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1': 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1', 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1': 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1', 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1': 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1', 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1': 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1', 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -Llib -L/<>/lib -Llib -L/<>/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1': 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1', 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1': 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1', 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1': 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1', 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1': 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1', 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1': 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1', 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1': 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1', 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1': 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1', 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1': 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1', 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1': 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1', 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1': 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1', 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1': 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1', 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1': 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1', 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1': 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1', 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1': 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1', 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1': 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1', 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1': 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1', 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1': 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1', 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1': 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1', 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1': 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1', 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1': 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1', 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1': 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1', 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1': 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1', 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1': 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1', 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1': 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1', 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1': 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1', 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1': 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1', 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1': 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1', 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1': 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1', 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1': 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1', 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/same_group.cpp g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/shared.cpp Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1': 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1', 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/special_position.cpp Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1': 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1', 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/symmetry_equivalent.cpp Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1': 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1', 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1': 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1', 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1': 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1', 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' g++ -o omptbx/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<>/build/include -I/<> -I/<>/build/include -I/usr/include/python3.10 -I/<> /<>/omptbx/ext.cpp g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_ext.cpp Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1': 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1', 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_grid.cpp g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_bool.cpp g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_size_t.cpp g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_int.cpp g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread -shared -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_float.cpp Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1': 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1', 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_double.cpp g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lomptbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1': 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1', 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_double_matrix.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/scitbx/array_family/boost_python/flex_size_t.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/scitbx/array_family/boost_python/flex_bool.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/scitbx/array_family/boost_python/flex_int.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/scitbx/array_family/boost_python/flex_double.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/scitbx/array_family/boost_python/flex_float.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_complex_double.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/to_python_value.hpp:20, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /<>/scitbx/array_family/boost_python/flex_wrapper.h:6, from /<>/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_std_string.cpp g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_random.cpp g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_sort.cpp g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_histogram.cpp g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_weighted_histogram.cpp g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_mean_and_variance.cpp g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_median.cpp g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_linear_interpolation.cpp g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_vec3_double.cpp g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_vec2_double.cpp g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_vec3_int.cpp g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_mat3_double.cpp g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/loops.cpp g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/show_sizes.cpp g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/usr/lib/python3/dist-packages/numpy/core/include /<>/scitbx/array_family/boost_python/numpy_bridge.cpp g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/shared_ext.cpp g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/cubicle_neighbors_ext.cpp g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/fftpack/boost_python/fftpack_ext.cpp g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/glmtbx/boost_python/ext.cc g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/graphics_utils/ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /usr/include/boost/python/numpy/dtype.hpp:15, from /usr/include/boost/python/numpy.hpp:10, from /<>/scitbx/array_family/boost_python/numpy_bridge.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/iso_surface/iso_surface_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/scitbx/cubicle_neighbors_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 -I/<>/fable /<>/scitbx/lbfgs/ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/scitbx/glmtbx/boost_python/ext.cc:11: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1': 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1', 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/fable scitbx/lbfgs/lbfgs_fem.cpp g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm /usr/bin/ld: scitbx/array_family/boost_python/numpy_bridge.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': ./build/./boost_adaptbx/floating_point_exceptions.h:50: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ./build/./boost_adaptbx/floating_point_exceptions.h:51: warning: feenableexcept is not implemented and will always fail /usr/bin/ld: scitbx/array_family/boost_python/numpy_bridge.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': ./build/./boost_adaptbx/floating_point_exceptions.h:65: warning: fegetexcept is not implemented and will always fail g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1': 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1', 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/linalg/boost_python/linalg_ext.cpp g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/linalg/boost_python/matrix.cpp Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1': 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1', 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/linalg/boost_python/cholesky.cpp g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1': 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1', 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/linalg/boost_python/householder.cpp g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm In file included from /usr/include/boost/config/header_deprecated.hpp:18, from /usr/include/boost/timer.hpp:20, from /<>/scitbx/lbfgsb/raw.h:9, from /<>/scitbx/lbfgsb.h:8, from /<>/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1': 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1', 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/linalg/boost_python/svd.cpp g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/linalg/boost_python/eigensystem.cpp g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1': 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1', 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1': 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1', 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/lstbx/boost_python/lstbx_ext.cpp g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/lstbx/boost_python/normal_equations.cpp Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1': 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1', 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/math_ext.cpp g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/basic_statistics.cpp g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/gaussian.cpp g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/golay.cpp g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/minimum_covering_sphere.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:3: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1': 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1', 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/principal_axes_of_inertia.cpp g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/row_echelon.cpp g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm /usr/bin/ld: scitbx/linalg/boost_python/cholesky.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': ./build/./boost_adaptbx/floating_point_exceptions.h:50: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ./build/./boost_adaptbx/floating_point_exceptions.h:51: warning: feenableexcept is not implemented and will always fail /usr/bin/ld: scitbx/linalg/boost_python/cholesky.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': ./build/./boost_adaptbx/floating_point_exceptions.h:65: warning: fegetexcept is not implemented and will always fail Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1': 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1', 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/tensor_rank_2.cpp g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/chebyshev.cpp g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/icosahedron.cpp g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/slatec.cpp g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/line_search.cpp g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/r3_rotation.cpp g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/resample.cpp /usr/bin/ld: scitbx/lstbx/boost_python/normal_equations.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': ./build/./boost_adaptbx/floating_point_exceptions.h:50: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ./build/./boost_adaptbx/floating_point_exceptions.h:51: warning: feenableexcept is not implemented and will always fail /usr/bin/ld: scitbx/lstbx/boost_python/normal_equations.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': ./build/./boost_adaptbx/floating_point_exceptions.h:65: warning: fegetexcept is not implemented and will always fail Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1': 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1', 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/quadrature.cpp g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/unimodular_generator.cpp g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/halton.cpp g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/least_squares_plane.cpp g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/continued_fraction.cpp g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/numeric_limits.cpp g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/distributions.cpp g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/exp_functions.cpp g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/zernike.cpp g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/zernike_moments.cpp g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/2d_zernike_moments.cpp g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/weighted_covariance.cpp g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/rotation.cpp g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/interpolation.cpp g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/tetrahedron.cpp g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/math/boost_python/angle_derivative.cpp g++ -o scitbx/minpack/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/minpack/ext.cpp g++ -o scitbx/r3_utils_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/r3_utils_ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/scitbx/math/boost_python/angle_derivative.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/random/boost_python/random_ext.cpp g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/random/boost_python/basic_distributions.cpp g++ -o scitbx/rigid_body/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/rigid_body/ext.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /<>/scitbx/r3_utils_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/sparse/boost_python/vector.cpp g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/sparse/boost_python/matrix.cpp g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1': 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1', 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/sparse/boost_python/approx_equal.cpp g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1': 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1', 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/sparse/boost_python/random.cpp g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/sparse/boost_python/lu_factorization.cpp g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/sparse/boost_python/sparse_ext.cpp g++ -o scitbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/stl/map_ext.cpp Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1': 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1', 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' In file included from /<>/scitbx/array_family/shared_plain.h:307, from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/versa_matrix.h:4, from /<>/scitbx/rigid_body/spatial_lib.h:5, from /<>/scitbx/rigid_body/featherstone.h:4, from /<>/scitbx/rigid_body/tardy.h:6, from /<>/scitbx/rigid_body/ext.cpp:14: /<>/scitbx/array_family/detail/push_back_etc.h: In member function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::af::tiny]’: /<>/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /<>/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/stl/set_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/stl/set_ext.cpp g++ -o scitbx/stl/vector_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/stl/vector_ext.cpp g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1': 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1', 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/suffixtree/boost_python/object_extensions.cpp In file included from /<>/scitbx/stl/set_ext.cpp:1: /<>/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const string&)’: /<>/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/11/memory:76, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/scitbx/stl/set_wrapper.h:4, from /<>/scitbx/stl/set_ext.cpp:1: /usr/include/c++/11/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1': 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1', 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o scitbx/wigner/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/wigner/ext.cpp g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1': 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1', 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/ab_initio/ab_initio_ext.cpp g++ -o smtbx/array_family/af_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/array_family/af_ext.cpp g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1': 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1', 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/affine.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /<>/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp:2: /usr/include/boost/detail/iterator.hpp:13:1: note: ‘#pragma message: This header is deprecated. Use instead.’ 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1': 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1', 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/constraints_ext.cpp g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1': 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1', 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/direction.cpp g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1': 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1', 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1': 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1', 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/occupancy.cpp g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/reparametrisation.cpp Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1': 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1', 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/rigid.cpp g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1': 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1', 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/same_group.cpp g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1': 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1', 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/shared.cpp g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/special_position.cpp g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/boost_python/least_squares_ext.cpp g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/boost_python/weighting_schemes.cpp g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/boost_python/least_squares.cpp g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/restraints/boost_python/origin_fixing.cpp g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/refinement/restraints/boost_python/restraints_ext.cpp g++ -o smtbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/stl/map_ext.cpp g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/structure_factors/direct/boost_python/ext.cpp g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/smtbx/structure_factors/direct/boost_python/standard_xray.cpp g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/std_pair_ext.so.0.0.1': 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1', 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/usr/include/python3.10 /<>/scitbx/array_family/boost_python/regression_test_ext.cpp g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_accessors.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/flex_types.h:6, from /<>/scitbx/array_family/tst_accessors.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -Llib -L/<>/lib -Llib -L/<>/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1': 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1', 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_1.cpp g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_accessors.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_2.cpp g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_3.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/build/include/scitbx/array_family/tiny_plain_apply.h:15, from /<>/scitbx/array_family/tst_af_1.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /<>/scitbx/array_family/tst_af_1.cpp:15: /usr/include/boost/bind.hpp: At global scope: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1': 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1', 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_4.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/small_plain.h:4, from /<>/scitbx/array_family/small.h:4, from /<>/scitbx/array_family/accessors/flex_grid.h:5, from /<>/scitbx/array_family/tst_af_2.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_3.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lscitbx_boost_python -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1': 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1', 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_af_5.cpp g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_af_2.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_mat3.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_5.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/simple_io.h:5, from /<>/scitbx/array_family/tst_af_4.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_af_3.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_optional_copy.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/array_family/tst_mat3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_af_5.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_rectangular_full_packed.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/shared_plain.h:31, from /<>/scitbx/array_family/versa_plain.h:5, from /<>/scitbx/array_family/versa.h:4, from /<>/scitbx/array_family/tst_optional_copy.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_af_1.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_ref_matrix_facet.cpp g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_mat3.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/array_family/tst_sym_mat3.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_sym_mat3.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/accessors/rectangular_full_packed.h:3, from /<>/scitbx/array_family/tst_rectangular_full_packed.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm /usr/bin/ld: g++ -o scitbx/array_family/tst_optional_copy -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_optional_copy.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system smtbx/refinement/restraints/boost_python/origin_fixing.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': ./build/./boost_adaptbx/floating_point_exceptions.h:50: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ./build/./boost_adaptbx/floating_point_exceptions.h:51: warning: feenableexcept is not implemented and will always fail /usr/bin/ld: smtbx/refinement/restraints/boost_python/origin_fixing.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': ./build/./boost_adaptbx/floating_point_exceptions.h:65: warning: fegetexcept is not implemented and will always fail g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_unsigned_float_arithmetic.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tst_ref_matrix_facet.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_rectangular_full_packed -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_rectangular_full_packed.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_vec3.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<> -I/<>/build/include -Iscitbx/array_family -I/<>/scitbx/array_family /<>/scitbx/array_family/tst_vec3.cpp /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1': 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1', 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o scitbx/error/tst_error.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Iscitbx/error -I/<>/scitbx/error /<>/scitbx/error/tst_error.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/mat3.h:6, from /<>/scitbx/sym_mat3.h:4, from /<>/scitbx/array_family/tst_sym_mat3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_ref_matrix_facet -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_ref_matrix_facet.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/scitbx/fftpack/timing/fftpack_timer.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/build/include/scitbx/array_family/tiny_algebra.h:14, from /<>/scitbx/array_family/tst_unsigned_float_arithmetic.cpp:3: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/error/tst_error -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/error/tst_error.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/scitbx/fftpack/timing/test0.cpp g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/vec3.h:4, from /<>/scitbx/array_family/tst_vec3.cpp:2: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -I/<>/fable scitbx/lbfgs/sdrive_fem.cpp g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_sym_mat3.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/scitbx/lbfgs/tst_lbfgs.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/tiny_types.h:4, from /<>/scitbx/fftpack/factorization.h:4, from /<>/scitbx/fftpack/complex_to_complex.h:4, from /<>/scitbx/fftpack/timing/fftpack_timer.cpp:6: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_vec3.o -Llib -L/<>/lib -Llib -L/<>/lib -lm In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/array_family/tiny_plain.h:4, from /<>/scitbx/array_family/tiny.h:4, from /<>/scitbx/array_family/tiny_types.h:4, from /<>/scitbx/fftpack/factorization.h:4, from /<>/scitbx/fftpack/complex_to_complex.h:4, from /<>/scitbx/fftpack/complex_to_complex_3d.h:4, from /<>/scitbx/fftpack/timing/test0.cpp:3: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/scitbx/lbfgsb/dev/driver1.cpp /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/versa_plain.h: In member function ‘const ElementType& scitbx::af::versa_plain::at(scitbx::af::versa_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/versa_plain.h:161:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 161 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(versa_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/scitbx/lbfgsb/dev/driver2.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver1.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/config/header_deprecated.hpp:18, from /usr/include/boost/timer.hpp:20, from /<>/scitbx/lbfgsb/raw.h:9, from /<>/scitbx/lbfgsb/dev/driver1.cpp:1: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver1.cpp:1: /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/lbfgs/tst_lbfgs.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/fftpack/timing/fftpack_timer.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lomptbx -lm g++ -o scitbx/lbfgsb/dev/driver3.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> /<>/scitbx/lbfgsb/dev/driver3.cpp g++ -o scitbx/math/tests/tst.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Iscitbx/math/tests -I/<>/scitbx/math/tests /<>/scitbx/math/tests/tst.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver2.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/fftpack/timing/test0.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system -lomptbx -lm /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/config/header_deprecated.hpp:18, from /usr/include/boost/timer.hpp:20, from /<>/scitbx/lbfgsb/raw.h:9, from /<>/scitbx/lbfgsb/dev/driver2.cpp:1: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_cholesky.cpp In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver2.cpp:1: /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver3.cpp:1: /<>/scitbx/array_family/tiny_plain.h: In member function ‘ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/tiny_plain.h: In member function ‘const ElementType& scitbx::af::tiny_plain::at(scitbx::af::tiny_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/tiny_plain.h:48:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 48 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(tiny_plain, elems, N) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/small_plain.h: In member function ‘const ElementType& scitbx::af::small_plain::at(scitbx::af::small_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/small_plain.h:107:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 107 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(small_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/config/header_deprecated.hpp:18, from /usr/include/boost/timer.hpp:20, from /<>/scitbx/lbfgsb/raw.h:9, from /<>/scitbx/lbfgsb/dev/driver3.cpp:1: /usr/include/boost/timer.hpp: At global scope: /usr/include/boost/timer.hpp:21:1: note: ‘#pragma message: This header is deprecated. Use the facilities in instead.’ 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/scitbx/array_family/ref.h:8, from /<>/scitbx/lbfgsb/raw.h:6, from /<>/scitbx/lbfgsb/dev/driver3.cpp:1: /<>/scitbx/array_family/shared_plain.h: In member function ‘ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type)’: /<>/scitbx/array_family/detail/ref_helpers.h:62:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:62:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 62 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/shared_plain.h: In member function ‘const ElementType& scitbx::af::shared_plain::at(scitbx::af::shared_plain::size_type) const’: /<>/scitbx/array_family/detail/ref_helpers.h:65:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/scitbx/array_family/detail/ref_helpers.h:65:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 65 | if (i >= sz) throw_range_error(); return beg[i]; \ | ^~~~~~ /<>/scitbx/array_family/shared_plain.h:277:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_BEGIN_END_ETC’ 277 | SCITBX_ARRAY_FAMILY_BEGIN_END_ETC(shared_plain, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/lbfgsb/dev/driver1.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_givens.cpp g++ -o scitbx/math/tests/tst -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/math/tests/tst.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_householder.cpp g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/lbfgsb/dev/driver2.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Iscitbx/matrix/tests -I/<>/scitbx/matrix/tests /<>/scitbx/matrix/tests/tst_svd.cpp g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/lbfgsb/dev/driver3.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Iscitbx/serialization -I/<>/scitbx/serialization /<>/scitbx/serialization/tst_base_256.cpp g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/matrix/tests/tst_givens.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Iscitbx/sparse/tests -I/<>/scitbx/sparse/tests /<>/scitbx/sparse/tests/tst_sparse.cpp g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/serialization/tst_base_256.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/matrix/tests/tst_cholesky.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system /usr/bin/ld: g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp scitbx/matrix/tests/tst_cholesky.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': ./build/./boost_adaptbx/floating_point_exceptions.h:50: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ./build/./boost_adaptbx/floating_point_exceptions.h:51: warning: feenableexcept is not implemented and will always fail /usr/bin/ld: scitbx/matrix/tests/tst_cholesky.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': ./build/./boost_adaptbx/floating_point_exceptions.h:65: warning: fegetexcept is not implemented and will always fail g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/array_family/tst_af_4.o -Llib -L/<>/lib -Llib -L/<>/lib -lm g++ -o lib/smtbx_refinement_least_squares_ext.so.0.0.1 -shared -rdynamic -Wl,-soname=smtbx_refinement_least_squares_ext.so.0 smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -Llib -L/<>/lib -Llib -L/<>/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_system -lboost_python39 -lboost_numpy39 -lm Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1': 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1', 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/<> -I/<>/build/include -I/<> -Ismtbx/refinement/constraints -I/<>/smtbx/refinement/constraints /<>/smtbx/refinement/constraints/tests/tst_special_position.cpp /usr/bin/ld: smtbx/refinement/boost_python/least_squares.o: in function `boost_adaptbx::floating_point::trap_exceptions(bool, bool, bool)': ./build/./boost_adaptbx/floating_point_exceptions.h:50: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ./build/./boost_adaptbx/floating_point_exceptions.h:51: warning: feenableexcept is not implemented and will always fail /usr/bin/ld: smtbx/refinement/boost_python/least_squares.o: in function `boost_adaptbx::floating_point::is_division_by_zero_trapped()': ./build/./boost_adaptbx/floating_point_exceptions.h:65: warning: fegetexcept is not implemented and will always fail Create symlinks for: 'lib/smtbx_refinement_least_squares_ext.so.0.0.1': 'lib/smtbx_refinement_least_squares_ext.so.0'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1', 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/matrix/tests/tst_householder.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/matrix/tests/tst_svd.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread scitbx/sparse/tests/tst_sparse.o -Llib -L/<>/lib -Llib -L/<>/lib -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread smtbx/refinement/constraints/tests/tst_special_position.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-Bsymbolic-functions -Wl,-z,relro -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -Llib -L/<>/lib -Llib -L/<>/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread -lboost_system scons: done building targets. usr+sys time: 167.68 seconds wall clock time: 107 minutes 37.62 seconds (6457.62 seconds total) iconv -f ISO-8859-1 -t UTF-8 cctbx/eltbx/covalent_radii.h > covalent_radii.h mv covalent_radii.h cctbx/eltbx/covalent_radii.h make[1]: Leaving directory '/<>' dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild W: pybuild base:266: missing command (plugin=custom, method=install, interpreter=python3.9, version=3.9) W: pybuild base:266: missing command (plugin=custom, method=install, interpreter=python3.10, version=3.10) dh_install -a -O--buildsystem=pybuild dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 93ace3c0bee92397157acbb9d7b87661add12e49 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 04e20de5aa19376f908c4170aa9442ee515719af debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 c3f13742aa9c7d3dcbf63b53ca5f1835b5bcfc5a debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 20b466b86d1a0aa55023dd920ef94eec307afdc2 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 99459e5dbba951790cb0d2de8d8ee1fb381011df debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 9da57202a617ff0b2470af823d0cab03f390e6e6 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8d492674031772567c99959f2acc5941d57b292a debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 0c700503cc0b1ec191da76ae4a50218dc85f4c37 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 2182f71ea08c9782bd9794d9a58f7c9c34812c27 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 b15dfa8acffeca44332319fbab46dbb3abb38996 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 50e55ee3b562e812e28dfb152bc233765703ad0a debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_shelx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 6b1c60658b2fa6d2916c9d2c4dff6520dc2c3e77 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 16992215020a8623fd500b4ae76872c4bcb47942 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 7327d38547dcedc9f5a5a1f68ed54e0272370069 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_wildcard_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 e6d2d4359e21554017746039a97586978920e428 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 083f0758c5f04d3c2e6656ee13ff411446d46c9d debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_multipolar_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 3dcbe3901f706d799fd039b086931262a95bd3e9 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 891f5622edd848f3433c03a934e6a1de5563b9b7 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 81fa921c82473bff57d542f86532bf515fec9436 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 d66a72baf6ae2b976a89429fea3eeae0e178431d debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 7c908b7063a0ecae6aeb25e1e44335560ffa2897 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 df7c098975e5dd93f23d81416d501af7096744da debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 961821cf7de7c3c395967f636dfd9870bc06b76d debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 a14812942e900e3af9a1a573b695cc696403160f debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 c282056c2f2a9f2f9ec123278e9a99d6e4d66910 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 251a9847a3d5df3d09b93136a150aecc37dbd784 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 7e97aad273b02b27d24dc966650a8c7381569ea5 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 808512ae7b89502066cd9f130d758a55037d1954 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 faf6505260e7e35c41cb0191f4ac71e1b73ef39e debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 358517137939e936205c239ee2893e4f9190468a debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8441aef4a1bb80f5c46c4b33163b7ea3cae1aa6b debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 b2059e7a9b42942dad1829cccafa861dd11634a7 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 49c7de9b827a32185c879a42109fbe8cc455c610 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 a3610b5af42515e766d127a66cb2b8ee79a537e6 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 7c99d369150ea3326f422253e25d58eec818110e debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 a80819f215107fb118ffc9fbc38dd7f967cf3098 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 241ca3b462e81e694b64f9918a2797a20e1b323c debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_dsn6_map_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 a9722a34826e70d609e15a86c4a166d14ec28622 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 3b3f2a2ff46415a0baf4848650ce7f96644092b7 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 7829abae8ce90f4d8f1cb7fe3c29a850887bb28b debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 7099e12c2c35ac18f2113016d0569fb4a844a392 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_statistics_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 c3c235e9b715b5678068cf92306ad4e53e702712 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 e3e517f8c8e808121d6a8dd82700b695fca3b61f debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 21e5ea237a4b87a36bf7ccf3e10074b0eee8e152 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_orientation_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 0b6ed0c55bc5a1e4e30907c079eb8a6f638b1c5b debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 0f8c440176c68d09fcf247aed42ccde03aab9fb8 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 0ce3da9a1546e6c892bf8c983614767b5002d49c debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 d94fa50c4602f70fbcdbe8393b55c947f9bfa66d debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_covariance_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 49771491acfbdebb36f5d36c502c8de64d0592a5 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 006a31f09ef744f0d857b719aa27af9c3ee3189b debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 ff249dbff9d6d58ccc1d71de5ddae8dfc0b8f70e debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 a3838bba13d7bead231002557b7a08e8d59525e2 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 11aee6c93af89e045f0f140019da4a4048dfb8f8 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 bcefbc406ddbbf6e08698fe63c182dbe73526f6c debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 2bd64cbfde12782227c7a538a6081b5bbab53ab3 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 020cb1fd8e015a02bd3e8272915047a45e91d352 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 97fd191c5a528c1ff4f8ffbca07f49e1aa9df517 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 f72025afe567418bce23646f82aaf3e752fe04d2 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 eb5601d082694103f30625d9d241e19faa075be6 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 197033722740bf06b23fa8108558924f553953c2 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_wigner_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 3a71b0d4595ca72acd739b9d7ea5b77bf1252d86 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_array_family_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 1ce3dbb62e0bd3ac1a6975e7ad26328d063d38fa debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 e94f38f8b74738d16c7906662240950f59cedb25 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 0978d0e2517c3dbaff0e7cba81320128f9f09421 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 e972dcc1aef00560485f177b22c7faf4a55a9253 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 b7856cdaff5714731ec7e10afe36b444688d3e2c debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 ddf7bf8fc649878974c4a40270db7c156d7122cc debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 0df0f9ce7d26b1836e95167267b37c886f79d078 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/std_pair_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 b321a4145028b97d4b669021ab75b551d4c49a82 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 1e0cde4e26917eb786338075e05f2da1f516dfc6 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 0840a051589015f2b05ba3323ba329fc6a74d5f2 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 6fce9d9e9a52b9eb058a7351e0d184505e6f22dd debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 d61c4959205cf64baff4b9107b4fed4588b56250 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 d35b71ec8ceee74e5fa905c895e9012183227346 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 9051cf0153127d5db7310b8a87f0154a36ecdbd2 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 7191bced3b82302c1be2cf13397c58c5aa30e22c debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_asymmetric_map_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 3898637a41b081b21b52f873d7917a2c0b2a5833 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 b8a1b66ad3c3fa271831fd1ebc55911feeeffff0 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 9a6b312e1cff124b1753eac6621f5bca52c0b701 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 f3f03b738b71495408ee17182cb106c7d70c82c5 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 9652cd4d1b786a4ce4e2c0b36ef6640d32279683 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 64ab5804ff09fd2d2a9cf11a993b86723e3185b2 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 60da82738eaecf888a46c3ef5c1aa4f1366661b4 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 385e59b9632ca2b9f8237af334a25a582d5fb114 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 c4266d812c5fd8b1f13efa23f8efdec57cde0a9b debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 2ad69e06209b9ee1dfa03d31e814be18baadfc9c debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_ab_initio_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 928893acdc9cd3c6509567e5594ecc2ba90be38b debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 3638b60c0aa698d0cdf9f5501969fe3b8e2f5336 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 fafdc53b0a82634fb8aa7ba28a86f617887a4855 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 898f221a9f4d2eb35cc82cb23dd65465c394e260 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 592fd52067f3e5bff62e7bda7381a14b45f29412 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_tuple_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 ccfd4644e613cea15b68ae63741677fc1295e85c debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 5bceecdb2351620d5e35752d6b3b88548e535710 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 8d5dc3cdff42b03cc729fecfa00de82c5a1993e9 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 251c05bd4e4627bf8ed9fd44a9bbead8fabc4e7a debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 7a2da00f8c813baf8619207245320959c38e8416 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_scalepack_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 7da553a21c473ccec47450def7d4b7b624167111 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 3128be5efb6ac67d9cd3ec70716ed55f40a312f2 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 171cfcb958e59410d9467cec47e38a22d5a63fa7 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 44a8916b2915b662b63cd9f6cf3b9f0c130370be debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/determine_unit_cell_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 cde5c1d4a2376baed319b863663ac8347a12a505 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f20 e00bbd4e08084bdb5f20dcec2134f836472deb64 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 915e9b5304da72c394c2702ac3a410708326a7f6 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 ffee6cf6933ddf2d61a4b5558a003e0f51eb1363 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 59591868506f3ca50e9cde17921a94f8f41f4e71 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 631b50fae351d4522f79ce20c20eb087bfecad85 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_merging_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 cd17c1519e4a5809622fd9f2363657a89b321688 debugedit: debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_dtrek_ext.so.0.0.1: Unknown DWARF DW_FORM_0x1f21 5d81432006cbe6c1273d58742c9175158983fa9e dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyCapsule_GetPointer used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyCapsule_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetNone used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_array_family_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_array_family_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_array_family_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBytes_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_TypeError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Clear used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_tuple_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBytes_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_utility_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/std_pair_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_statistics_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_statistics_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Clear used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Next used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PySlice_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_ab_initio_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_ab_initio_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PySlice_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyImport_ImportModule used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_ZeroDivisionError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_rational_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_covariance_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_covariance_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_covariance_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_covariance_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_dtrek_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_dtrek_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: symbol PyExc_ImportError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBytes_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_AttributeError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_AsDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 41 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_scalepack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_scalepack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_asymmetric_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_asymmetric_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_cubicle_neighbors_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_metric_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_wigner_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_wigner_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_wigner_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_wigner_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_shelx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_shelx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_orientation_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_orientation_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_orientation_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_orientation_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_ValueError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Hash used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_KeyError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromWideChar used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_optional_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_suffixtree_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_random_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_dsn6_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_dsn6_map_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/determine_unit_cell_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/determine_unit_cell_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/determine_unit_cell_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/determine_unit_cell_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_hybrid_times_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_r3_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PySlice_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetIter used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_HasAttrString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Occurred used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_Clear used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_merging_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_merging_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyComplex_FromDoubles used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyDict_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/scitbx_iso_surface_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_multipolar_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_multipolar_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_StopIteration used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_ValueError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_GetItem used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBytes_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsInstance used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _PyBytes_Resize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyExc_ValueError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_Size used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyIter_Check used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBytes_FromStringAndSize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_OverflowError used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_GetAttrString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _PyBytes_Resize used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyUnicode_AsEncodedString used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyList_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyEval_CallFunction used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyTuple_New used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromUnsignedLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyBool_FromLong used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyLong_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_FromDouble used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyFloat_Type used by debian/libcctbx0/usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so.0.0.1 found in none of the libraries dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cctbx: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libcctbx0 (in debian/libcctbx0); do_strip: , oemstrip: INFO: pkgstriptranslations version 149 pkgstriptranslations: processing libcctbx0-dbgsym (in debian/.debhelper/libcctbx0/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python3-cctbx (in debian/python3-cctbx); do_strip: , oemstrip: pkgstriptranslations: processing libcctbx-dev (in debian/libcctbx-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libcctbx0/DEBIAN/control, package libcctbx0, directory debian/libcctbx0 pkgstripfiles: Running PNG optimization (using 8 cpus) for package libcctbx0 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcctbx0' in '../libcctbx0_2021.12+ds1-2_riscv64.deb'. pkgstripfiles: processing control file: debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control, package libcctbx0-dbgsym, directory debian/.debhelper/libcctbx0/dbgsym-root dpkg-deb: building package 'libcctbx0-dbgsym' in 'debian/.debhelper/scratch-space/build-libcctbx0/libcctbx0-dbgsym_2021.12+ds1-2_riscv64.deb'. pkgstripfiles: processing control file: debian/python3-cctbx/DEBIAN/control, package python3-cctbx, directory debian/python3-cctbx INFO: pkgstripfiles: waiting for lock (python3-cctbx) ... pkgstripfiles: processing control file: debian/libcctbx-dev/DEBIAN/control, package libcctbx-dev, directory debian/libcctbx-dev Searching for duplicated docs in dependency libcctbx0... INFO: pkgstripfiles: waiting for lock (python3-cctbx) ... symlinking changelog.Debian.gz in libcctbx-dev to file in libcctbx0 pkgstripfiles: Running PNG optimization (using 8 cpus) for package libcctbx-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libcctbx-dev' in '../libcctbx-dev_2021.12+ds1-2_riscv64.deb'. Searching for duplicated docs in dependency libcctbx0... symlinking changelog.Debian.gz in python3-cctbx to file in libcctbx0 pkgstripfiles: Running PNG optimization (using 8 cpus) for package python3-cctbx ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-cctbx' in '../python3-cctbx_2021.12+ds1-2_riscv64.deb'. Renaming libcctbx0-dbgsym_2021.12+ds1-2_riscv64.deb to libcctbx0-dbgsym_2021.12+ds1-2_riscv64.ddeb dpkg-genbuildinfo --build=any -O../cctbx_2021.12+ds1-2_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../cctbx_2021.12+ds1-2_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-02-13T20:59:50Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ cctbx_2021.12+ds1-2_riscv64.changes: ------------------------------------ Format: 1.8 Date: Sun, 13 Feb 2022 08:27:32 +0000 Source: cctbx Binary: libcctbx-dev libcctbx0 python3-cctbx Built-For-Profiles: noudeb Architecture: riscv64 Version: 2021.12+ds1-2 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Neil Williams Description: libcctbx-dev - Computational Crystallography Toolbox (headers) libcctbx0 - Computational Crystallography Toolbox python3-cctbx - Python Toolbox for crystallography Changes: cctbx (2021.12+ds1-2) unstable; urgency=medium . * Source only upload Checksums-Sha1: f7356d7af09d2b8cfbbd96f92699e5f7738e2f70 13508 cctbx_2021.12+ds1-2_riscv64.buildinfo 3f1f50e385ef34353881a5afa1384359ea3ddf2b 102882 libcctbx-dev_2021.12+ds1-2_riscv64.deb e84bb37291c49d0f0e5af875909f6141f0746920 99237084 libcctbx0-dbgsym_2021.12+ds1-2_riscv64.ddeb 0405916a26a12c1837d87acdf48f7516808a0976 22255970 libcctbx0_2021.12+ds1-2_riscv64.deb 8e954fee76441f3a240df850c4a0e60bf67999f1 775342 python3-cctbx_2021.12+ds1-2_riscv64.deb Checksums-Sha256: 224a66560cef81fedd939cb4a88f2eb7a6d290e338deecbd63bfc93d6febb16e 13508 cctbx_2021.12+ds1-2_riscv64.buildinfo ba7cce5a00fbbb696aae996bf046d01c88c4d2c00a497b1d69ab5df0205b7a2c 102882 libcctbx-dev_2021.12+ds1-2_riscv64.deb cb2471891863e2467f347f36bd6181bf116d59d7aee38f58a166b3800422694e 99237084 libcctbx0-dbgsym_2021.12+ds1-2_riscv64.ddeb c6342f24f653f0c82619cb03d622a9f9c24aa91911c881d54ddf288379e9c39d 22255970 libcctbx0_2021.12+ds1-2_riscv64.deb cc9e354322aa8f4f9d5efc81c1172c5c7f3fda53b906a69a84782bf982d46b92 775342 python3-cctbx_2021.12+ds1-2_riscv64.deb Files: 51c9b56c5bb12608a46c7e01146ee5d6 13508 science optional cctbx_2021.12+ds1-2_riscv64.buildinfo fbb16d022a8cf3657784a25fff93397c 102882 devel optional libcctbx-dev_2021.12+ds1-2_riscv64.deb d4a734b6a6152bb625c3edc823cda33f 99237084 debug optional libcctbx0-dbgsym_2021.12+ds1-2_riscv64.ddeb 66a4b72314f66201e6eff03b176be6e6 22255970 libs optional libcctbx0_2021.12+ds1-2_riscv64.deb d929cd4785a88a4ca94b4ffc9fa55599 775342 python optional python3-cctbx_2021.12+ds1-2_riscv64.deb /<>/cctbx_2021.12+ds1-2_riscv64.changes.new could not be renamed to /<>/cctbx_2021.12+ds1-2_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: cctbx Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx Architecture: riscv64 Version: 2021.12+ds1-2 Checksums-Md5: fbb16d022a8cf3657784a25fff93397c 102882 libcctbx-dev_2021.12+ds1-2_riscv64.deb d4a734b6a6152bb625c3edc823cda33f 99237084 libcctbx0-dbgsym_2021.12+ds1-2_riscv64.ddeb 66a4b72314f66201e6eff03b176be6e6 22255970 libcctbx0_2021.12+ds1-2_riscv64.deb d929cd4785a88a4ca94b4ffc9fa55599 775342 python3-cctbx_2021.12+ds1-2_riscv64.deb Checksums-Sha1: 3f1f50e385ef34353881a5afa1384359ea3ddf2b 102882 libcctbx-dev_2021.12+ds1-2_riscv64.deb e84bb37291c49d0f0e5af875909f6141f0746920 99237084 libcctbx0-dbgsym_2021.12+ds1-2_riscv64.ddeb 0405916a26a12c1837d87acdf48f7516808a0976 22255970 libcctbx0_2021.12+ds1-2_riscv64.deb 8e954fee76441f3a240df850c4a0e60bf67999f1 775342 python3-cctbx_2021.12+ds1-2_riscv64.deb Checksums-Sha256: ba7cce5a00fbbb696aae996bf046d01c88c4d2c00a497b1d69ab5df0205b7a2c 102882 libcctbx-dev_2021.12+ds1-2_riscv64.deb cb2471891863e2467f347f36bd6181bf116d59d7aee38f58a166b3800422694e 99237084 libcctbx0-dbgsym_2021.12+ds1-2_riscv64.ddeb c6342f24f653f0c82619cb03d622a9f9c24aa91911c881d54ddf288379e9c39d 22255970 libcctbx0_2021.12+ds1-2_riscv64.deb cc9e354322aa8f4f9d5efc81c1172c5c7f3fda53b906a69a84782bf982d46b92 775342 python3-cctbx_2021.12+ds1-2_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Sun, 13 Feb 2022 20:59:26 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: adduser (= 3.118ubuntu5), autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20220109.1), base-files (= 12ubuntu2), base-passwd (= 3.5.52), bash (= 5.1-6ubuntu1), binutils (= 2.38-1ubuntu1), binutils-common (= 2.38-1ubuntu1), binutils-riscv64-linux-gnu (= 2.38-1ubuntu1), blt (= 2.5.3+dfsg-4.1build1), bsdextrautils (= 2.37.2-4ubuntu1), bsdutils (= 1:2.37.2-4ubuntu1), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1ubuntu1), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-16ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.5.2ubuntu1), debianutils (= 5.5-1ubuntu1), debugedit (= 1:5.0-4), dh-autoreconf (= 20), dh-exec (= 0.23.4build1), dh-python (= 5.20220119), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.21.1ubuntu1), dpkg-dev (= 1.21.1ubuntu1), dwz (= 0.14-1build1), fftw-dev (= 2.1.5-6), fftw2 (= 2.1.5-6), file (= 1:5.41-2), findutils (= 4.8.0-1ubuntu2), fontconfig-config (= 2.13.1-4.2ubuntu4), fonts-dejavu-core (= 2.37-2build1), fonts-lyx (= 2.3.6-1), fonts-urw-base35 (= 20200910-1), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-16ubuntu1), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-16ubuntu1), gcc-11-base (= 11.2.0-16ubuntu1), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4ubuntu2), hdf5-helpers (= 1.10.7+repack-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), jq (= 1.6-2.1ubuntu2), libacl1 (= 2.3.1-1), libaec-dev (= 1.0.6-1), libaec0 (= 1.0.6-1), libann-dev (= 1.1.2+doc-7build1), libann0 (= 1.1.2+doc-7build1), libantlr3c-3.4-0 (= 3.4+dfsg-4build1), libantlr3c-dev (= 3.4+dfsg-4build1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-16ubuntu1), libatomic1 (= 11.2.0-16ubuntu1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.38-1ubuntu1), libblas3 (= 3.10.0-2ubuntu1), libblkid1 (= 2.37.2-4ubuntu1), libboost-atomic1.74-dev (= 1.74.0-14ubuntu2), libboost-atomic1.74.0 (= 1.74.0-14ubuntu2), libboost-chrono1.74-dev (= 1.74.0-14ubuntu2), libboost-chrono1.74.0 (= 1.74.0-14ubuntu2), libboost-date-time1.74-dev (= 1.74.0-14ubuntu2), libboost-date-time1.74.0 (= 1.74.0-14ubuntu2), libboost-dev (= 1.74.0.3ubuntu6), libboost-numpy-dev (= 1.74.0.3ubuntu6), libboost-numpy1.74-dev (= 1.74.0-14ubuntu2), libboost-numpy1.74.0 (= 1.74.0-14ubuntu2), libboost-python-dev (= 1.74.0.3ubuntu6), libboost-python1.74-dev (= 1.74.0-14ubuntu2), libboost-python1.74.0 (= 1.74.0-14ubuntu2), libboost-serialization1.74-dev (= 1.74.0-14ubuntu2), libboost-serialization1.74.0 (= 1.74.0-14ubuntu2), libboost-system1.74-dev (= 1.74.0-14ubuntu2), libboost-system1.74.0 (= 1.74.0-14ubuntu2), libboost-thread-dev (= 1.74.0.3ubuntu6), libboost-thread1.74-dev (= 1.74.0-14ubuntu2), libboost-thread1.74.0 (= 1.74.0-14ubuntu2), libboost1.74-dev (= 1.74.0-14ubuntu2), libbrotli1 (= 1.0.9-2build4), libbsd0 (= 0.11.5-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.35-0ubuntu1), libc-dev-bin (= 2.35-0ubuntu1), libc6 (= 2.35-0ubuntu1), libc6-dev (= 2.35-0ubuntu1), libcap-ng0 (= 0.7.9-2.2build3), libcap2 (= 1:2.44-1build2), libcbf-dev (= 0.9.6+dfsg1-3), libcbf1 (= 0.9.6+dfsg1-3), libcc1-0 (= 11.2.0-16ubuntu1), libccp4-data (= 6.5.1-5), libccp4-dev (= 6.5.1-5), libccp4c0 (= 6.5.1-5), libccp4f0 (= 6.5.1-5), libclipper-dev (= 2.1.20201109-1), libclipper2 (= 2.1.20201109-1), libcom-err2 (= 1.46.5-2ubuntu1), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.38-1ubuntu1), libctf0 (= 2.38-1ubuntu1), libcurl3-gnutls (= 7.81.0-1), libcurl4 (= 7.81.0-1), libcurl4-openssl-dev (= 7.81.0-1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.261ubuntu1), libdebhelper-perl (= 13.5.2ubuntu1), libdeflate0 (= 1.8-1ubuntu1), libdpkg-perl (= 1.21.1ubuntu1), libdw1 (= 0.186-1), libedit2 (= 3.1-20210910-1), libeigen3-dev (= 3.4.0-2ubuntu2), libelf1 (= 0.186-1), libevent-core-2.1-7 (= 2.1.12-stable-1build2), libevent-pthreads-2.1-7 (= 2.1.12-stable-1build2), libexpat1 (= 2.4.4-1), libexpat1-dev (= 2.4.4-1), libfabric1 (= 1.11.0-3), libffi8 (= 3.4.2-4), libfftw3-bin (= 3.3.8-2ubuntu7), libfftw3-dev (= 3.3.8-2ubuntu7), libfftw3-double3 (= 3.3.8-2ubuntu7), libfftw3-long3 (= 3.3.8-2ubuntu7), libfftw3-single3 (= 3.3.8-2ubuntu7), libfile-stripnondeterminism-perl (= 1.13.0-1), libfontconfig1 (= 2.13.1-4.2ubuntu4), libfreetype6 (= 2.11.1+dfsg-1), libfribidi0 (= 1.0.8-2ubuntu2), libgcc-11-dev (= 11.2.0-16ubuntu1), libgcc-s1 (= 11.2.0-16ubuntu1), libgcrypt20 (= 1.9.4-3ubuntu2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgfortran5 (= 11.2.0-16ubuntu1), libglib2.0-0 (= 2.71.1-1), libgmp10 (= 2:6.2.1+dfsg-3ubuntu1), libgnutls30 (= 3.7.3-4ubuntu1), libgomp1 (= 11.2.0-16ubuntu1), libgpg-error0 (= 1.43-3), libgraphite2-3 (= 1.3.14-1build1), libgssapi-krb5-2 (= 1.19.2-1), libharfbuzz0b (= 2.7.4-1ubuntu3), libhdf5-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-cpp-103-1 (= 1.10.7+repack-4ubuntu2), libhdf5-dev (= 1.10.7+repack-4ubuntu2), libhdf5-fortran-102 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-cpp-100 (= 1.10.7+repack-4ubuntu2), libhdf5-hl-fortran-100 (= 1.10.7+repack-4ubuntu2), libhogweed6 (= 3.7.3-1build1), libhwloc-plugins (= 2.7.0-2), libhwloc15 (= 2.7.0-2), libibverbs1 (= 39.0-1), libicu70 (= 70.1-2), libidn2-0 (= 2.3.2-2), libimagequant0 (= 2.17.0-1), libisl23 (= 0.24-2), libjbig0 (= 2.1-3.1build2), libjpeg-dev (= 8c-2ubuntu8), libjpeg-turbo8 (= 2.1.1-0ubuntu1), libjpeg-turbo8-dev (= 2.1.1-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjpeg8-dev (= 8c-2ubuntu8), libjq1 (= 1.6-2.1ubuntu2), libjs-jquery (= 3.5.1+dfsg+~3.5.5-8), libjs-jquery-ui (= 1.13.0+dfsg-1), libjs-sphinxdoc (= 4.3.2-1), libjs-underscore (= 1.13.2~dfsg-2), libk5crypto3 (= 1.19.2-1), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.19.2-1), libkrb5support0 (= 1.19.2-1), liblapack3 (= 3.10.0-2ubuntu1), liblbfgsb0 (= 3.0+dfsg.3-10), liblcms2-2 (= 2.12~rc1-2build1), libldap-2.5-0 (= 2.5.11+dfsg-1~exp1ubuntu2), liblz4-1 (= 1.9.3-2build1), liblz4-dev (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmd0 (= 1.0.4-1), libmmdb2-0 (= 2.0.20-1), libmmdb2-dev (= 2.0.20-1), libmount1 (= 2.37.2-4ubuntu1), libmpc3 (= 1.2.1-1), libmpdec3 (= 2.5.1-2build1), libmpfr6 (= 4.1.0-3build2), libncursesw6 (= 6.3-2), libnettle8 (= 3.7.3-1build1), libnghttp2-14 (= 1.43.0-1build2), libnl-3-200 (= 3.5.0-0.1), libnl-route-3-200 (= 3.5.0-0.1), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libonig5 (= 6.9.7.1-2), libopenjp2-7 (= 2.4.0-6), libopenmpi3 (= 4.1.2-1ubuntu1), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11ubuntu1), libpam-modules-bin (= 1.4.0-11ubuntu1), libpam-runtime (= 1.4.0-11ubuntu1), libpam0g (= 1.4.0-11ubuntu1), libpciaccess0 (= 0.16-3), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13build4), libperl5.34 (= 5.34.0-3ubuntu1), libpipeline1 (= 1.5.5-1), libpmix2 (= 4.1.1~rc6-1ubuntu1), libpng16-16 (= 1.6.37-3build4), libpsl5 (= 0.21.0-1.2build1), libpython3-all-dev (= 3.10.1-0ubuntu1), libpython3-dev (= 3.10.1-0ubuntu1), libpython3-stdlib (= 3.10.1-0ubuntu1), libpython3.10 (= 3.10.2-1), libpython3.10-dev (= 3.10.2-1), libpython3.10-minimal (= 3.10.2-1), libpython3.10-stdlib (= 3.10.2-1), libpython3.9 (= 3.9.10-1), libpython3.9-dev (= 3.9.10-1), libpython3.9-minimal (= 3.9.10-1), libpython3.9-stdlib (= 3.9.10-1), libqhull-r8.0 (= 2020.2-4), libraqm0 (= 0.7.0-4ubuntu1), librdmacm1 (= 39.0-1), libreadline8 (= 8.1.2-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build3), libsasl2-2 (= 2.1.27+dfsg2-3), libsasl2-modules-db (= 2.1.27+dfsg2-3), libselinux1 (= 3.3-1build1), libsemanage-common (= 3.3-1build1), libsemanage2 (= 3.3-1build1), libsepol2 (= 3.3-1), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.37.2-4ubuntu1), libsqlite3-0 (= 3.37.2-2), libssh-4 (= 0.9.6-2), libssl-dev (= 3.0.1-0ubuntu1), libssl3 (= 3.0.1-0ubuntu1), libstdc++-11-dev (= 11.2.0-16ubuntu1), libstdc++6 (= 11.2.0-16ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 249.9-0ubuntu2), libsz2 (= 1.0.6-1), libtasn1-6 (= 4.18.0-4), libtcl8.6 (= 8.6.12+dfsg-1), libtiff5 (= 4.3.0-4), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtk8.6 (= 8.6.12-1), libtool (= 2.4.6-15build1), libuchardet0 (= 0.0.7-1build1), libudev1 (= 249.9-0ubuntu2), libunistring2 (= 1.0-1), libuuid1 (= 2.37.2-4ubuntu1), libwebp7 (= 1.2.1-6), libwebpdemux2 (= 1.2.1-6), libwebpmux3 (= 1.2.1-6), libx11-6 (= 2:1.7.2-2), libx11-data (= 2:1.7.2-2), libxau6 (= 1:1.0.9-1build4), libxcb1 (= 1.14-3ubuntu2), libxdmcp6 (= 1:1.1.3-0ubuntu4), libxext6 (= 2:1.3.4-1), libxft2 (= 2.3.3-0ubuntu4), libxml2 (= 2.9.12+dfsg-5build1), libxnvctrl0 (= 470.57.01-0ubuntu4), libxrender1 (= 1:0.9.10-1build3), libxslt1.1 (= 1.1.34-4build1), libxss1 (= 1:1.2.3-1build1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.0-22.22), login (= 1:4.8.1-2ubuntu1), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 19), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.10.1-1), mawk (= 1.3.4.20200120-3), media-types (= 5.0.0), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), ocl-icd-libopencl1 (= 2.2.14-3), passwd (= 1:4.8.1-2ubuntu1), patch (= 2.7.6-7build1), perl (= 5.34.0-3ubuntu1), perl-base (= 5.34.0-3ubuntu1), perl-modules-5.34 (= 5.34.0-3ubuntu1), pkg-config (= 0.29.2-1ubuntu2), po-debconf (= 1.0.21+nmu1), python-matplotlib-data (= 3.5.1-2), python3 (= 3.10.1-0ubuntu1), python3-all (= 3.10.1-0ubuntu1), python3-all-dev (= 3.10.1-0ubuntu1), python3-appdirs (= 1.4.4-2), python3-attr (= 21.2.0-1), python3-biopython (= 1.79+dfsg-1), python3-brotli (= 1.0.9-2build4), python3-cycler (= 0.11.0-1), python3-dateutil (= 2.8.1-6), python3-decorator (= 4.4.2-0ubuntu1), python3-dev (= 3.10.1-0ubuntu1), python3-distutils (= 3.9.10-1), python3-fonttools (= 4.29.1-1), python3-fs (= 2.4.12-1), python3-future (= 0.18.2-5), python3-kiwisolver (= 1.3.2-1), python3-lib2to3 (= 3.9.10-1), python3-lxml (= 4.7.1-1), python3-lz4 (= 3.1.3+dfsg-1build2), python3-matplotlib (= 3.5.1-2), python3-minimal (= 3.10.1-0ubuntu1), python3-mpmath (= 1.2.1-2), python3-msgpack (= 1.0.2-2), python3-numpy (= 1:1.21.5-1), python3-packaging (= 21.3-1), python3-pil (= 9.0.0-1build1), python3-pil.imagetk (= 9.0.0-1build1), python3-pkg-resources (= 59.6.0-1.2), python3-psutil (= 5.9.0-1), python3-pyparsing (= 2.4.7-1), python3-renderpm (= 3.6.5-1), python3-reportlab (= 3.6.5-1), python3-reportlab-accel (= 3.6.5-1), python3-scipy (= 1.7.1-1ubuntu1), python3-setuptools (= 59.6.0-1.2), python3-six (= 1.16.0-3), python3-sympy (= 1.9-1), python3-tk (= 3.9.10-1), python3-tz (= 2021.3-1), python3-ufolib2 (= 0.13.1+dfsg1-1), python3.10 (= 3.10.2-1), python3.10-dev (= 3.10.2-1), python3.10-minimal (= 3.10.2-1), python3.9 (= 3.9.10-1), python3.9-dev (= 3.9.10-1), python3.9-minimal (= 3.9.10-1), readline-common (= 8.1.2-1), rpcsvc-proto (= 1.4.2-0ubuntu5), scons (= 4.0.1+dfsg-2), sed (= 4.8-1ubuntu1), sensible-utils (= 0.0.17), sfftw-dev (= 2.1.5-6), sfftw2 (= 2.1.5-6), sysvinit-utils (= 3.01-1ubuntu1), tar (= 1.34+dfsg-1build2), tk8.6-blt2.5 (= 2.5.3+dfsg-4.1build1), tzdata (= 2021e-1ubuntu1), ucf (= 3.0043), unicode-data (= 14.0.0-1.1), util-linux (= 2.37.2-4ubuntu1), x11-common (= 1:7.7+23ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7), zlib1g-dev (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="nocheck parallel=8" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1644740852" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libcctbx-dev_2021.12+ds1-2_riscv64.deb -------------------------------------- new Debian package, version 2.0. size 102882 bytes: control archive=3546 bytes. 597 bytes, 15 lines control 8495 bytes, 109 lines md5sums Package: libcctbx-dev Source: cctbx Version: 2021.12+ds1-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 815 Depends: libcctbx0 (= 2021.12+ds1-2) Section: devel Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox (headers) Header files for packages using cctbx shared libraries supporting the cctbx, cbflib, scitbx, crys3d, libtbx, iotbx, wxtbx and smtbx modules. drwxr-xr-x root/root 0 2022-02-13 08:27 ./ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/ -rw-r--r-- root/root 5808 2022-01-01 18:15 ./usr/include/cctbx/coordinates.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/eltbx/ -rw-r--r-- root/root 1863 2022-01-01 18:15 ./usr/include/cctbx/eltbx/basic.h -rw-r--r-- root/root 2127 2022-02-13 08:27 ./usr/include/cctbx/eltbx/covalent_radii.h -rw-r--r-- root/root 2828 2022-01-01 18:15 ./usr/include/cctbx/eltbx/fp_fdp.h -rw-r--r-- root/root 3979 2022-01-01 18:15 ./usr/include/cctbx/eltbx/henke.h -rw-r--r-- root/root 3107 2022-01-01 18:15 ./usr/include/cctbx/eltbx/icsd_radii.h -rw-r--r-- root/root 3514 2022-01-01 18:15 ./usr/include/cctbx/eltbx/neutron.h -rw-r--r-- root/root 2165 2022-01-01 18:15 ./usr/include/cctbx/eltbx/tiny_pse.h -rw-r--r-- root/root 2151 2022-01-01 18:15 ./usr/include/cctbx/eltbx/wavelengths.h -rw-r--r-- root/root 11495 2022-01-01 18:15 ./usr/include/cctbx/eltbx/xray_scattering.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/eltbx/xray_scattering/ -rw-r--r-- root/root 2284 2022-01-01 18:15 ./usr/include/cctbx/eltbx/xray_scattering/form_factor.h -rw-r--r-- root/root 1664 2022-01-01 18:15 ./usr/include/cctbx/eltbx/xray_scattering/gaussian.h -rw-r--r-- root/root 2301 2022-01-01 18:15 ./usr/include/cctbx/error.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/gltbx/ -rw-r--r-- root/root 1239 2022-01-01 18:15 ./usr/include/cctbx/gltbx/error.h -rw-r--r-- root/root 6351 2022-01-01 18:15 ./usr/include/cctbx/hendrickson_lattman.h -rw-r--r-- root/root 190 2022-01-01 18:15 ./usr/include/cctbx/import_scitbx_af.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/iotbx/ -rw-r--r-- root/root 2301 2022-01-01 18:15 ./usr/include/cctbx/iotbx/error.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/math/ -rw-r--r-- root/root 1439 2022-01-01 18:15 ./usr/include/cctbx/math/loop_n_from_m.h -rw-r--r-- root/root 3831 2022-01-01 18:15 ./usr/include/cctbx/miller.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/miller/ -rw-r--r-- root/root 3823 2022-01-01 18:15 ./usr/include/cctbx/miller/index_generator.h -rw-r--r-- root/root 11625 2022-01-01 18:15 ./usr/include/cctbx/miller/sym_equiv.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/mmtbx/ -rw-r--r-- root/root 2174 2022-01-01 18:15 ./usr/include/cctbx/mmtbx/error.h -rw-r--r-- root/root 190 2022-01-01 18:15 ./usr/include/cctbx/mmtbx/import_scitbx_af.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/accessors/ -rw-r--r-- root/root 6459 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/c_grid.h -rw-r--r-- root/root 788 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/c_index_1d_calculator.h -rw-r--r-- root/root 11576 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/flex_grid.h -rw-r--r-- root/root 290 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/mat_grid.h -rw-r--r-- root/root 608 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/accessors/trivial.h -rw-r--r-- root/root 761 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/array_adaptor.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/detail/ -rw-r--r-- root/root 515 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/auto_allocator.h -rw-r--r-- root/root 9246 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/generic_array_functors.h -rw-r--r-- root/root 10267 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/generic_array_operators.h -rw-r--r-- root/root 3120 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/misc.h -rw-r--r-- root/root 6386 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/detail/operator_functors.h -rw-r--r-- root/root 6033 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/push_back_etc.h -rw-r--r-- root/root 1932 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/reducing_boolean_mem_fun.h -rw-r--r-- root/root 3470 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/ref_helpers.h -rw-r--r-- root/root 8115 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/detail/std_imports.h -rw-r--r-- root/root 3840 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/detail/tiny_helpers.h -rw-r--r-- root/root 363 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/error.h -rw-r--r-- root/root 2612 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/loops.h -rw-r--r-- root/root 2774 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/memory.h -rw-r--r-- root/root 3825 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/misc_functions.h -rw-r--r-- root/root 7239 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/operator_traits_builtin.h -rw-r--r-- root/root 14978 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/ref.h -rw-r--r-- root/root 14796 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/ref_reductions.h -rw-r--r-- root/root 3152 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/shared.h -rw-r--r-- root/root 11091 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/shared_plain.h -rw-r--r-- root/root 1599 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/small.h -rw-r--r-- root/root 58690 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/small_algebra.h -rw-r--r-- root/root 4156 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/small_plain.h -rw-r--r-- root/root 3714 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/small_reductions.h -rw-r--r-- root/root 1013 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/tiny.h -rw-r--r-- root/root 640 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/tiny_mat_ref.h -rw-r--r-- root/root 1732 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/tiny_plain.h -rw-r--r-- root/root 3654 2022-02-13 08:27 ./usr/include/cctbx/scitbx/array_family/tiny_reductions.h -rw-r--r-- root/root 2623 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/tiny_types.h -rw-r--r-- root/root 1431 2022-01-01 18:15 ./usr/include/cctbx/scitbx/array_family/type_traits.h -rw-r--r-- root/root 1879 2022-01-01 18:15 ./usr/include/cctbx/scitbx/constants.h -rw-r--r-- root/root 2350 2022-01-01 18:15 ./usr/include/cctbx/scitbx/error.h -rw-r--r-- root/root 4754 2022-01-01 18:15 ./usr/include/cctbx/scitbx/error_utils.h -rw-r--r-- root/root 25139 2022-01-01 18:15 ./usr/include/cctbx/scitbx/mat3.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/math/ -rw-r--r-- root/root 2548 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/approx_equal.h -rw-r--r-- root/root 442 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/atanh.h -rw-r--r-- root/root 10433 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/bessel.h -rw-r--r-- root/root 562 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/compile_time.h -rw-r--r-- root/root 1326 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/erf.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/math/erf/ -rw-r--r-- root/root 2494 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/erf/constants.h -rw-r--r-- root/root 6740 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/erf/engine.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/math/gaussian/ -rw-r--r-- root/root 6375 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/gaussian/sum.h -rw-r--r-- root/root 2657 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/gaussian/term.h -rw-r--r-- root/root 4361 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/gcd.h -rw-r--r-- root/root 771 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/modulo.h -rw-r--r-- root/root 292 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/traits.h -rw-r--r-- root/root 3883 2022-01-01 18:15 ./usr/include/cctbx/scitbx/math/utils.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/scitbx/matrix/ -rw-r--r-- root/root 2132 2022-01-01 18:15 ./usr/include/cctbx/scitbx/matrix/as_xyz.h -rw-r--r-- root/root 1872 2022-01-01 18:15 ./usr/include/cctbx/scitbx/numerical.h -rw-r--r-- root/root 1732 2022-01-01 18:15 ./usr/include/cctbx/scitbx/rational.h -rw-r--r-- root/root 22179 2022-01-01 18:15 ./usr/include/cctbx/scitbx/sym_mat3.h -rw-r--r-- root/root 197 2022-01-01 18:15 ./usr/include/cctbx/scitbx/type_holder.h -rw-r--r-- root/root 16941 2022-01-01 18:15 ./usr/include/cctbx/scitbx/vec3.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/sgtbx/ -rw-r--r-- root/root 1655 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/basic.h -rw-r--r-- root/root 4194 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/brick.h -rw-r--r-- root/root 10494 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/change_of_basis_op.h -rw-r--r-- root/root 4708 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/group_codes.h -rw-r--r-- root/root 556 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/lattice_tr.h -rw-r--r-- root/root 688 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/miller_ops.h -rw-r--r-- root/root 2961 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/parse_string.h -rw-r--r-- root/root 5057 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/phase_info.h -rw-r--r-- root/root 3992 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/reciprocal_space_asu.h -rw-r--r-- root/root 3959 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/reciprocal_space_reference_asu.h -rw-r--r-- root/root 2553 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/reference_settings.h -rw-r--r-- root/root 11934 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/rot_mx.h -rw-r--r-- root/root 1423 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/rot_mx_info.h -rw-r--r-- root/root 1180 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/rotation_matrices.h -rw-r--r-- root/root 684 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/row_echelon_solve.h -rw-r--r-- root/root 20589 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/rt_mx.h -rw-r--r-- root/root 859 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/select_generators.h -rw-r--r-- root/root 802 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/smith_normal_form.h -rw-r--r-- root/root 27947 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/space_group.h -rw-r--r-- root/root 10467 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/space_group_type.h -rw-r--r-- root/root 13091 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/symbols.h -rw-r--r-- root/root 1629 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/tr_group.h -rw-r--r-- root/root 6560 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/tr_vec.h -rw-r--r-- root/root 458 2022-01-01 18:15 ./usr/include/cctbx/sgtbx/utils.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/include/cctbx/smtbx/ -rw-r--r-- root/root 2301 2022-01-01 18:15 ./usr/include/cctbx/smtbx/error.h -rw-r--r-- root/root 152 2022-01-01 18:15 ./usr/include/cctbx/smtbx/import_scitbx_af.h -rw-r--r-- root/root 43427 2022-01-01 18:15 ./usr/include/cctbx/uctbx.h drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/ lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so -> boost_adaptbx_boost_thread_test_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so -> boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so -> boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_connected_component_algorithm_ext.so -> boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_ext.so -> boost_adaptbx_graph_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_graph_structure_comparison_ext.so -> boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_maximum_clique_ext.so -> boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_metric_ext.so -> boost_adaptbx_graph_metric_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_min_cut_max_flow_ext.so -> boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_utility_ext.so -> boost_adaptbx_graph_utility_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_python_streambuf_test_ext.so -> boost_adaptbx_python_streambuf_test_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_optional_ext.so -> boost_optional_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_python_hybrid_times_ext.so -> boost_python_hybrid_times_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_python_meta_ext.so -> boost_python_meta_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_rational_ext.so -> boost_rational_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_tuple_ext.so -> boost_tuple_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_adp_restraints_ext.so -> cctbx_adp_restraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so -> cctbx_adptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_anharmonic_ext.so -> cctbx_anharmonic_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so -> cctbx_array_family_flex_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_asymmetric_map_ext.so -> cctbx_asymmetric_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_covariance_ext.so -> cctbx_covariance_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so -> cctbx_crystal_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so -> cctbx_dmtbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so -> cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so -> cctbx_eltbx_chemical_elements_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so -> cctbx_eltbx_covalent_radii_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so -> cctbx_eltbx_fp_fdp_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so -> cctbx_eltbx_henke_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so -> cctbx_eltbx_icsd_radii_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so -> cctbx_eltbx_neutron_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so -> cctbx_eltbx_sasaki_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so -> cctbx_eltbx_tiny_pse_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so -> cctbx_eltbx_wavelengths_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so -> cctbx_eltbx_xray_scattering_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so -> cctbx_emma_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so -> cctbx_french_wilson_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_geometry_ext.so -> cctbx_geometry_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so -> cctbx_geometry_restraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so -> cctbx_maptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so -> cctbx_masks_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_math_ext.so -> cctbx_math_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_merging_ext.so -> cctbx_merging_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so -> cctbx_miller_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_multipolar_ext.so -> cctbx_multipolar_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_orientation_ext.so -> cctbx_orientation_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so -> cctbx_sgtbx_asu_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so -> cctbx_sgtbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_statistics_ext.so -> cctbx_statistics_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so -> cctbx_symmetry_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so -> cctbx_translation_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so -> cctbx_uctbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so -> cctbx_xray_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so -> cctbx_xray_observations_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/determine_unit_cell_ext.so -> determine_unit_cell_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/fable_ext.so -> fable_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so -> iotbx_detectors_bruker_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so -> iotbx_detectors_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_dsn6_map_ext.so -> iotbx_dsn6_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_dtrek_ext.so -> iotbx_dtrek_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so -> iotbx_pdb_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so -> iotbx_pdb_hierarchy_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_scalepack_ext.so -> iotbx_scalepack_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_shelx_ext.so -> iotbx_shelx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_wildcard_ext.so -> iotbx_wildcard_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so -> iotbx_xplor_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libasymmetric_map.so -> libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libcctbx.so -> libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libomptbx.so -> libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/omptbx_ext.so -> omptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so -> scitbx_array_family_flex_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_array_family_shared_ext.so -> scitbx_array_family_shared_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_cubicle_neighbors_ext.so -> scitbx_cubicle_neighbors_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_fftpack_ext.so -> scitbx_fftpack_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_glmtbx_ext.so -> scitbx_glmtbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_graphics_utils_ext.so -> scitbx_graphics_utils_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_iso_surface_ext.so -> scitbx_iso_surface_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_lbfgs_ext.so -> scitbx_lbfgs_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_lbfgsb_ext.so -> scitbx_lbfgsb_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_linalg_ext.so -> scitbx_linalg_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_lstbx_normal_equations_ext.so -> scitbx_lstbx_normal_equations_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_math_ext.so -> scitbx_math_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_minpack_ext.so -> scitbx_minpack_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_r3_utils_ext.so -> scitbx_r3_utils_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_random_ext.so -> scitbx_random_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_rigid_body_ext.so -> scitbx_rigid_body_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_sparse_ext.so -> scitbx_sparse_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_stl_map_ext.so -> scitbx_stl_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_stl_set_ext.so -> scitbx_stl_set_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_stl_vector_ext.so -> scitbx_stl_vector_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_suffixtree_shared_ext.so -> scitbx_suffixtree_shared_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_suffixtree_single_ext.so -> scitbx_suffixtree_single_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_wigner_ext.so -> scitbx_wigner_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/smtbx_ab_initio_ext.so -> smtbx_ab_initio_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/smtbx_array_family_ext.so -> smtbx_array_family_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/smtbx_refinement_constraints_ext.so -> smtbx_refinement_constraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/smtbx_refinement_least_squares_ext.so -> smtbx_refinement_least_squares_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/smtbx_refinement_restraints_ext.so -> smtbx_refinement_restraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/smtbx_stl_map_ext.so -> smtbx_stl_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/smtbx_structure_factors_direct_ext.so -> smtbx_structure_factors_direct_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/std_pair_ext.so -> std_pair_ext.so.0.0.1 drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/doc/libcctbx-dev/ lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/share/doc/libcctbx-dev/changelog.Debian.gz -> ../libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 38507 2022-02-13 08:17 ./usr/share/doc/libcctbx-dev/copyright libcctbx0_2021.12+ds1-2_riscv64.deb ----------------------------------- new Debian package, version 2.0. size 22255970 bytes: control archive=4695 bytes. 1492 bytes, 28 lines control 10137 bytes, 110 lines md5sums 5671 bytes, 108 lines shlibs 74 bytes, 2 lines triggers Package: libcctbx0 Source: cctbx Version: 2021.12+ds1-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 147315 Depends: libboost-numpy1.74.0 (>= 1.74.0), libboost-numpy1.74.0-py39, libboost-python1.74.0 (>= 1.74.0), libboost-python1.74.0-py39, libboost-thread1.74.0 (>= 1.74.0), libc6 (>= 2.34), libgcc-s1 (>= 4.5), libstdc++6 (>= 11) Section: libs Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox Computational Crystallography Toolbox contains following modules: boost_adaptbx: wrappers for Boost functionality in CCTBX cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. crys3d: Modules for the display of molecules, electron density, and reciprocal space data. fable: Fortran EMulation library for porting Fortran77 to C++. iotbx: Working with common crystallographic file formats. omptbx: OpenMP interface. scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. smtbx: Small-Molecule crystallography. wxtbx: wxPython controls used in the Phenix GUI and various utilities drwxr-xr-x root/root 0 2022-02-13 08:27 ./ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/ lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0 -> boost_adaptbx_boost_thread_test_ext.so.0.0.1 -rw-r--r-- root/root 161824 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_boost_thread_test_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0 -> boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -rw-r--r-- root/root 572840 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/boost_adaptbx_graph_clustering_algorithm_ext.so.0 -> 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cctbx_adptbx_ext.so.0.0.1 -rw-r--r-- root/root 1114112 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_adptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_anharmonic_ext.so.0 -> cctbx_anharmonic_ext.so.0.0.1 -rw-r--r-- root/root 220792 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_anharmonic_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0 -> cctbx_array_family_flex_ext.so.0.0.1 -rw-r--r-- root/root 3788440 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_array_family_flex_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_asymmetric_map_ext.so.0 -> cctbx_asymmetric_map_ext.so.0.0.1 -rw-r--r-- root/root 287504 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_asymmetric_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_covariance_ext.so.0 -> cctbx_covariance_ext.so.0.0.1 -rw-r--r-- root/root 257648 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_covariance_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0 -> cctbx_crystal_ext.so.0.0.1 -rw-r--r-- root/root 5250008 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_crystal_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0 -> cctbx_dmtbx_ext.so.0.0.1 -rw-r--r-- root/root 514232 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_dmtbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0 -> cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -rw-r--r-- root/root 195720 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0 -> cctbx_eltbx_chemical_elements_ext.so.0.0.1 -rw-r--r-- root/root 100400 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_chemical_elements_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0 -> cctbx_eltbx_covalent_radii_ext.so.0.0.1 -rw-r--r-- root/root 199536 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_covalent_radii_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0 -> cctbx_eltbx_fp_fdp_ext.so.0.0.1 -rw-r--r-- root/root 145248 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_fp_fdp_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0 -> cctbx_eltbx_henke_ext.so.0.0.1 -rw-r--r-- root/root 212256 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_henke_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0 -> cctbx_eltbx_icsd_radii_ext.so.0.0.1 -rw-r--r-- root/root 199520 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_icsd_radii_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0 -> cctbx_eltbx_neutron_ext.so.0.0.1 -rw-r--r-- root/root 216248 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_neutron_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0 -> cctbx_eltbx_sasaki_ext.so.0.0.1 -rw-r--r-- root/root 212256 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_sasaki_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0 -> cctbx_eltbx_tiny_pse_ext.so.0.0.1 -rw-r--r-- root/root 224816 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_tiny_pse_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0 -> cctbx_eltbx_wavelengths_ext.so.0.0.1 -rw-r--r-- root/root 186976 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_wavelengths_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0 -> cctbx_eltbx_xray_scattering_ext.so.0.0.1 -rw-r--r-- root/root 800968 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_eltbx_xray_scattering_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0 -> cctbx_emma_ext.so.0.0.1 -rw-r--r-- root/root 329704 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_emma_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0 -> cctbx_french_wilson_ext.so.0.0.1 -rw-r--r-- root/root 149536 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_french_wilson_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_geometry_ext.so.0 -> cctbx_geometry_ext.so.0.0.1 -rw-r--r-- root/root 518096 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_geometry_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0 -> cctbx_geometry_restraints_ext.so.0.0.1 -rw-r--r-- root/root 12848040 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_geometry_restraints_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0 -> cctbx_maptbx_ext.so.0.0.1 -rw-r--r-- root/root 4966192 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_maptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0 -> cctbx_masks_ext.so.0.0.1 -rw-r--r-- root/root 505896 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_masks_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0 -> cctbx_math_ext.so.0.0.1 -rw-r--r-- root/root 136784 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_math_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_merging_ext.so.0 -> cctbx_merging_ext.so.0.0.1 -rw-r--r-- root/root 111768 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_merging_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0 -> cctbx_miller_ext.so.0.0.1 -rw-r--r-- root/root 4533040 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_miller_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_multipolar_ext.so.0 -> cctbx_multipolar_ext.so.0.0.1 -rw-r--r-- root/root 73792 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_multipolar_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_orientation_ext.so.0 -> cctbx_orientation_ext.so.0.0.1 -rw-r--r-- root/root 258520 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_orientation_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0 -> cctbx_sgtbx_asu_ext.so.0.0.1 -rw-r--r-- root/root 1176992 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_sgtbx_asu_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0 -> cctbx_sgtbx_ext.so.0.0.1 -rw-r--r-- root/root 6950120 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_sgtbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_statistics_ext.so.0 -> cctbx_statistics_ext.so.0.0.1 -rw-r--r-- root/root 174480 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_statistics_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so.0 -> cctbx_symmetry_search_ext.so.0.0.1 -rw-r--r-- root/root 354376 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_symmetry_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0 -> cctbx_translation_search_ext.so.0.0.1 -rw-r--r-- root/root 462848 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_translation_search_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0 -> cctbx_uctbx_ext.so.0.0.1 -rw-r--r-- root/root 1123352 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_uctbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0 -> cctbx_xray_ext.so.0.0.1 -rw-r--r-- root/root 7038736 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_xray_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0 -> cctbx_xray_observations_ext.so.0.0.1 -rw-r--r-- root/root 740000 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/cctbx_xray_observations_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/determine_unit_cell_ext.so.0 -> determine_unit_cell_ext.so.0.0.1 -rw-r--r-- root/root 106776 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/determine_unit_cell_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/fable_ext.so.0 -> fable_ext.so.0.0.1 -rw-r--r-- root/root 334296 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/fable_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0 -> iotbx_detectors_bruker_ext.so.0.0.1 -rw-r--r-- root/root 208368 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_detectors_bruker_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0 -> iotbx_detectors_ext.so.0.0.1 -rw-r--r-- root/root 1230808 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_detectors_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_dsn6_map_ext.so.0 -> iotbx_dsn6_map_ext.so.0.0.1 -rw-r--r-- root/root 94616 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_dsn6_map_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_dtrek_ext.so.0 -> iotbx_dtrek_ext.so.0.0.1 -rw-r--r-- root/root 182680 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_dtrek_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0 -> iotbx_pdb_ext.so.0.0.1 -rw-r--r-- root/root 1073688 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_pdb_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0 -> iotbx_pdb_hierarchy_ext.so.0.0.1 -rw-r--r-- root/root 3909720 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_pdb_hierarchy_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_scalepack_ext.so.0 -> iotbx_scalepack_ext.so.0.0.1 -rw-r--r-- root/root 195424 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_scalepack_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_shelx_ext.so.0 -> iotbx_shelx_ext.so.0.0.1 -rw-r--r-- root/root 233232 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_shelx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_wildcard_ext.so.0 -> iotbx_wildcard_ext.so.0.0.1 -rw-r--r-- root/root 65288 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_wildcard_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0 -> iotbx_xplor_ext.so.0.0.1 -rw-r--r-- root/root 245496 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/iotbx_xplor_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 -rw-r--r-- root/root 253864 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libcctbx.so.0 -> libcctbx.so.0.0.1 -rw-r--r-- root/root 2767976 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 -rw-r--r-- root/root 3612784 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 -rw-r--r-- root/root 1595152 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 -rw-r--r-- root/root 90552 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libomptbx.so.0 -> libomptbx.so.0.0.1 -rw-r--r-- root/root 10376 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 -rw-r--r-- root/root 31704 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 -rw-r--r-- root/root 27224 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 -rw-r--r-- root/root 14336 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 -rw-r--r-- root/root 624896 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/omptbx_ext.so.0 -> omptbx_ext.so.0.0.1 -rw-r--r-- root/root 69688 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/omptbx_ext.so.0.0.1 lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/lib/riscv64-linux-gnu/scitbx_array_family_flex_ext.so.0 -> 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Version: 2021.12+ds1-2 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Science Maintainers Installed-Size: 4630 Depends: libcctbx0 (= 2021.12+ds1-2), ca-certificates, python3:any Section: python Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Python Toolbox for crystallography Python Modules for crystallographic applications, useful for both small-molecule and macro-molecular crystallography and modules for general scientific calculations. drwxr-xr-x root/root 0 2022-02-13 08:27 ./ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/python3/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/python3/dist-packages/cctbx/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/lib/python3/dist-packages/cctbx/adp_restraints/ -rw-r--r-- root/root 17059 2022-02-13 08:27 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08:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/doc/python3-cctbx/ lrwxrwxrwx root/root 0 2022-02-13 08:27 ./usr/share/doc/python3-cctbx/changelog.Debian.gz -> ../libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 38507 2022-02-13 08:17 ./usr/share/doc/python3-cctbx/copyright drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-02-13 08:27 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 1 2022-02-13 08:17 ./usr/share/lintian/overrides/python3-cctbx +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 3690148 Build-Time: 10250 Distribution: jammy-proposed Host Architecture: riscv64 Install-Time: 1881 Job: cctbx_2021.12+ds1-2.dsc Machine Architecture: riscv64 Package: cctbx Package-Time: 12196 Source-Version: 2021.12+ds1-2 Space: 3690148 Status: successful Version: 2021.12+ds1-2 -------------------------------------------------------------------------------- Finished at 2022-02-13T20:59:50Z Build needed 03:23:16, 3690148k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23162310 Scanning for processes to kill in build PACKAGEBUILD-23162310 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23162310 Stopping target for build PACKAGEBUILD-23162310 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=jammy --arch=riscv64 PACKAGEBUILD-23162310 Removing build PACKAGEBUILD-23162310